HEADER TRANSFERASE 30-NOV-22 8FBX TITLE SELENOSUGAR SYNTHASE SENB FROM VARIOVORAX PARADOXUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SELENOSUGAR SYNTHASE SENB; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VARIOVORAX PARADOXUS; SOURCE 3 ORGANISM_TAXID: 34073; SOURCE 4 STRAIN: DSM 30034; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS SE-C, BIOSYNTHESIS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.A.IRELAND,K.M.DAVIS REVDAT 3 20-DEC-23 8FBX 1 JRNL REVDAT 2 29-NOV-23 8FBX 1 JRNL REVDAT 1 22-NOV-23 8FBX 0 JRNL AUTH K.A.IRELAND,C.M.KAYROUZ,J.HUANG,M.R.SEYEDSAYAMDOST,K.M.DAVIS JRNL TITL STRUCTURAL CHARACTERIZATION AND LIGAND-INDUCED JRNL TITL 2 CONFORMATIONAL CHANGES OF SENB, A SE-GLYCOSYLTRANSFERASE JRNL TITL 3 INVOLVED IN SELENONEINE BIOSYNTHESIS. JRNL REF BIOCHEMISTRY V. 62 3337 2023 JRNL REFN ISSN 0006-2960 JRNL PMID 37966244 JRNL DOI 10.1021/ACS.BIOCHEM.3C00452 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.010 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 3 NUMBER OF REFLECTIONS : 46208 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.740 REMARK 3 FREE R VALUE TEST SET COUNT : 1730 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.9500 - 5.1500 0.96 3950 151 0.2168 0.2051 REMARK 3 2 5.1500 - 4.0900 0.96 3865 149 0.1752 0.2157 REMARK 3 3 4.0900 - 3.5700 0.97 3843 147 0.1786 0.2091 REMARK 3 4 3.5700 - 3.2400 0.97 3874 143 0.1939 0.2334 REMARK 3 5 3.2400 - 3.0100 0.97 3822 148 0.2046 0.2623 REMARK 3 6 3.0100 - 2.8300 0.93 3693 155 0.2110 0.2881 REMARK 3 7 2.8300 - 2.6900 0.94 3716 150 0.2119 0.2013 REMARK 3 8 2.6900 - 2.5800 0.93 3674 148 0.2112 0.3092 REMARK 3 9 2.5800 - 2.4800 0.92 3650 143 0.2199 0.2748 REMARK 3 10 2.4800 - 2.3900 0.90 3552 135 0.2332 0.2928 REMARK 3 11 2.3900 - 2.3200 0.88 3477 132 0.2238 0.2501 REMARK 3 12 2.3200 - 2.2500 0.85 3362 129 0.2517 0.2938 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.265 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.998 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.57 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 6784 REMARK 3 ANGLE : 1.450 9244 REMARK 3 CHIRALITY : 0.084 1068 REMARK 3 PLANARITY : 0.011 1217 REMARK 3 DIHEDRAL : 14.264 2408 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8FBX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-DEC-22. REMARK 100 THE DEPOSITION ID IS D_1000270288. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUL-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9785 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS XDS-APPLE_M1 REMARK 200 DATA SCALING SOFTWARE : XDS XDS-APPLE_M1 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48509 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 47.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.12050 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.3100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.60420 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.520 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 1.20.1_4487 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: SPHERICAL CRYSTALS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BTP PH 7, 2.7 M SODIUM FORMATE, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 568 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 624 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 634 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 617 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 GLY A 15 REMARK 465 ALA A 16 REMARK 465 ASN A 17 REMARK 465 ASN A 18 REMARK 465 GLN A 89 REMARK 465 ARG A 155 REMARK 465 GLN A 156 REMARK 465 VAL A 157 REMARK 465 LYS A 158 REMARK 465 GLY A 185 REMARK 465 ASP A 186 REMARK 465 ALA A 187 REMARK 465 GLY A 188 REMARK 465 LEU A 189 REMARK 465 LEU A 230 REMARK 465 GLU A 231 REMARK 465 GLY A 232 REMARK 465 GLY A 233 REMARK 465 SER A 288 REMARK 465 LYS A 289 REMARK 465 ASP A 290 REMARK 465 ARG A 291 REMARK 465 ALA A 292 REMARK 465 ALA A 293 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 PRO B 14 REMARK 465 GLY B 15 REMARK 465 ALA B 16 REMARK 465 ASN B 17 REMARK 465 HIS B 153 REMARK 465 LEU B 154 REMARK 465 ARG B 155 REMARK 465 GLN B 156 REMARK 465 VAL B 157 REMARK 465 LYS B 158 REMARK 465 GLY B 185 REMARK 465 ASP B 186 REMARK 465 ALA B 187 REMARK 465 GLY B 188 REMARK 465 ALA B 229 REMARK 465 LEU B 230 REMARK 465 GLU B 231 REMARK 465 GLY B 232 REMARK 465 GLY B 233 REMARK 465 GLY B 287 REMARK 465 SER B 288 REMARK 465 LYS B 289 REMARK 465 ASP B 290 REMARK 465 ARG B 291 REMARK 465 ALA B 292 REMARK 465 ALA B 293 REMARK 465 MET C -19 REMARK 465 GLY C -18 REMARK 465 SER C -17 REMARK 465 SER C -16 REMARK 465 HIS C -15 REMARK 465 HIS C -14 REMARK 465 HIS C -13 REMARK 465 HIS C -12 REMARK 465 HIS C -11 REMARK 465 HIS C -10 REMARK 465 SER C -9 REMARK 465 SER C -8 REMARK 465 GLY C -7 REMARK 465 LEU C -6 REMARK 465 VAL C -5 REMARK 465 PRO C -4 REMARK 465 ARG C -3 REMARK 465 GLY C -2 REMARK 465 SER C -1 REMARK 465 HIS C 0 REMARK 465 MET C 1 REMARK 465 LEU C 13 REMARK 465 PRO C 14 REMARK 465 GLY C 15 REMARK 465 ALA C 16 REMARK 465 ASN C 17 REMARK 465 GLY C 152 REMARK 465 HIS C 153 REMARK 465 LEU C 154 REMARK 465 ARG C 155 REMARK 465 GLN C 156 REMARK 465 VAL C 157 REMARK 465 LYS C 158 REMARK 465 SER C 159 REMARK 465 GLY C 185 REMARK 465 ASP C 186 REMARK 465 ALA C 187 REMARK 465 GLY C 188 REMARK 465 ALA C 229 REMARK 465 LEU C 230 REMARK 465 GLU C 231 REMARK 465 GLY C 232 REMARK 465 GLY C 287 REMARK 465 SER C 288 REMARK 465 LYS C 289 REMARK 465 ASP C 290 REMARK 465 ARG C 291 REMARK 465 ALA C 292 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 2 N CB OG REMARK 470 ASN A 3 CG OD1 ND2 REMARK 470 LEU A 13 CG CD1 CD2 REMARK 470 ARG A 22 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 31 CD2 REMARK 470 GLN A 42 CD OE1 NE2 REMARK 470 LEU A 57 CD2 REMARK 470 GLU A 64 CG CD OE1 OE2 REMARK 470 SER A 93 OG REMARK 470 GLN A 102 CG CD OE1 NE2 REMARK 470 ARG A 144 CD NE CZ NH1 NH2 REMARK 470 HIS A 153 CG ND1 CD2 CE1 NE2 REMARK 470 GLN A 161 CG CD OE1 NE2 REMARK 470 ARG A 168 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 174 CG CD OE1 OE2 REMARK 470 ARG A 177 NE CZ NH1 NH2 REMARK 470 GLU A 191 CG CD OE1 OE2 REMARK 470 LEU A 192 CG CD1 CD2 REMARK 470 ARG A 194 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 235 CG ND1 CD2 CE1 NE2 REMARK 470 ASP A 297 OD1 OD2 REMARK 470 ASN B 3 CG OD1 ND2 REMARK 470 LEU B 13 CG CD1 CD2 REMARK 470 ARG B 60 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 61 CZ NH1 NH2 REMARK 470 GLN B 89 CG CD OE1 NE2 REMARK 470 ARG B 99 CD NE CZ NH1 NH2 REMARK 470 SER B 159 N CB OG REMARK 470 LEU B 163 CG CD1 CD2 REMARK 470 ARG B 168 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 183 CG OD1 OD2 REMARK 470 LEU B 189 CG CD1 CD2 REMARK 470 GLU B 191 CG CD OE1 OE2 REMARK 470 LEU B 192 CG CD1 CD2 REMARK 470 ARG B 194 CG CD NE CZ NH1 NH2 REMARK 470 SER B 198 OG REMARK 470 HIS B 211 CG ND1 CD2 CE1 NE2 REMARK 470 GLN B 213 CG CD OE1 NE2 REMARK 470 ARG B 215 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 219 CG CD OE1 NE2 REMARK 470 ARG B 220 NE CZ NH1 NH2 REMARK 470 SER B 228 OG REMARK 470 VAL B 236 CG1 CG2 REMARK 470 ASP B 297 CG OD1 OD2 REMARK 470 SER C 2 OG REMARK 470 ASN C 3 ND2 REMARK 470 ASN C 18 CG OD1 ND2 REMARK 470 GLN C 41 CD OE1 NE2 REMARK 470 LEU C 57 CD1 REMARK 470 ARG C 60 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 61 CZ NH1 NH2 REMARK 470 GLU C 64 CG CD OE1 OE2 REMARK 470 LEU C 82 CD2 REMARK 470 GLN C 89 CG CD OE1 NE2 REMARK 470 ILE C 91 CG2 REMARK 470 SER C 93 OG REMARK 470 ARG C 136 NE CZ NH1 NH2 REMARK 470 ARG C 168 CD NE CZ NH1 NH2 REMARK 470 ASP C 183 CG OD1 OD2 REMARK 470 LEU C 189 CG CD1 CD2 REMARK 470 GLU C 191 CG CD OE1 OE2 REMARK 470 LEU C 192 CG CD1 CD2 REMARK 470 GLN C 213 CG CD OE1 NE2 REMARK 470 ARG C 215 NE CZ NH1 NH2 REMARK 470 ARG C 220 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 45 -161.93 -129.99 REMARK 500 HIS A 58 111.68 82.05 REMARK 500 HIS B 58 108.42 77.99 REMARK 500 GLN B 89 -33.33 -153.86 REMARK 500 SER B 93 -28.92 -147.19 REMARK 500 THR B 227 38.23 -98.06 REMARK 500 HIS C 58 105.88 73.88 REMARK 500 GLN C 89 -37.20 -148.11 REMARK 500 PRO C 330 128.97 -39.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 32 O REMARK 620 2 CYS A 35 O 75.4 REMARK 620 3 HOH A 600 O 113.6 84.9 REMARK 620 4 HOH A 622 O 151.9 95.4 91.4 REMARK 620 5 HOH A 625 O 98.8 150.2 70.5 101.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA C 402 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA C 197 O REMARK 620 2 CYS C 200 O 71.4 REMARK 620 3 PRO C 201 O 151.4 84.5 REMARK 620 4 TYR C 203 O 98.9 83.7 93.3 REMARK 620 5 HOH C 523 O 63.2 93.4 104.4 161.7 REMARK 620 N 1 2 3 4 DBREF 8FBX A -19 331 PDB 8FBX 8FBX -19 331 DBREF 8FBX B -19 331 PDB 8FBX 8FBX -19 331 DBREF 8FBX C -19 331 PDB 8FBX 8FBX -19 331 SEQRES 1 A 351 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 351 LEU VAL PRO ARG GLY SER HIS MET SER ASN PRO SER LEU SEQRES 3 A 351 VAL ILE VAL SER PRO ALA LEU PRO GLY ALA ASN ASN GLY SEQRES 4 A 351 ASN TRP ARG THR ALA GLN ARG TRP LYS ALA LEU LEU SER SEQRES 5 A 351 PRO VAL CYS SER ALA ARG VAL VAL GLN GLN TRP PRO ASP SEQRES 6 A 351 ALA ASP ALA SER ALA ASP THR VAL MET LEU ALA LEU HIS SEQRES 7 A 351 ALA ARG ARG SER ALA GLU SER ILE ALA HIS TRP ALA HIS SEQRES 8 A 351 ALA HIS PRO GLY ARG GLY LEU GLY VAL VAL LEU THR GLY SEQRES 9 A 351 THR ASP LEU TYR GLN ASP ILE GLY SER ASP PRO GLN ALA SEQRES 10 A 351 GLN ARG SER LEU GLN LEU ALA GLN ARG LEU VAL VAL LEU SEQRES 11 A 351 GLN ALA LEU GLY ALA GLU ALA LEU PRO PRO GLU CYS ARG SEQRES 12 A 351 ALA LYS ALA ARG VAL VAL TYR GLN SER THR SER ALA ARG SEQRES 13 A 351 ALA GLU LEU PRO LYS SER ALA ARG GLN LEU ARG ALA VAL SEQRES 14 A 351 MET VAL GLY HIS LEU ARG GLN VAL LYS SER PRO GLN THR SEQRES 15 A 351 LEU PHE ASP ALA ALA ARG LEU LEU CYS GLY ARG GLU ASP SEQRES 16 A 351 ILE ARG ILE ASP HIS ILE GLY ASP ALA GLY ASP ALA GLY SEQRES 17 A 351 LEU GLY GLU LEU ALA ARG ALA LEU ALA SER ASP CYS PRO SEQRES 18 A 351 GLY TYR ARG TRP LEU GLY ALA LEU PRO HIS ALA GLN THR SEQRES 19 A 351 ARG GLN ARG ILE GLN ARG ALA HIS VAL LEU VAL HIS THR SEQRES 20 A 351 SER ALA LEU GLU GLY GLY ALA HIS VAL ILE MET GLU ALA SEQRES 21 A 351 VAL ARG SER GLY THR PRO VAL LEU ALA SER ARG VAL PRO SEQRES 22 A 351 GLY ASN VAL GLY MET LEU GLY ASN ASP TYR ALA GLY TYR SEQRES 23 A 351 PHE PRO HIS GLY ASP ALA ALA ALA LEU ALA ALA LEU LEU SEQRES 24 A 351 GLU ALA CYS ARG ALA GLY GLN GLY SER LYS ASP ARG ALA SEQRES 25 A 351 ALA GLY LEU LEU ASP SER LEU ARG THR GLN CYS ALA LEU SEQRES 26 A 351 ARG ALA PRO LEU PHE ASP PRO ARG ALA GLU GLN ALA ALA SEQRES 27 A 351 LEU PHE GLN LEU LEU ASN GLU LEU GLN PRO PRO PRO PRO SEQRES 1 B 351 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 351 LEU VAL PRO ARG GLY SER HIS MET SER ASN PRO SER LEU SEQRES 3 B 351 VAL ILE VAL SER PRO ALA LEU PRO GLY ALA ASN ASN GLY SEQRES 4 B 351 ASN TRP ARG THR ALA GLN ARG TRP LYS ALA LEU LEU SER SEQRES 5 B 351 PRO VAL CYS SER ALA ARG VAL VAL GLN GLN TRP PRO ASP SEQRES 6 B 351 ALA ASP ALA SER ALA ASP THR VAL MET LEU ALA LEU HIS SEQRES 7 B 351 ALA ARG ARG SER ALA GLU SER ILE ALA HIS TRP ALA HIS SEQRES 8 B 351 ALA HIS PRO GLY ARG GLY LEU GLY VAL VAL LEU THR GLY SEQRES 9 B 351 THR ASP LEU TYR GLN ASP ILE GLY SER ASP PRO GLN ALA SEQRES 10 B 351 GLN ARG SER LEU GLN LEU ALA GLN ARG LEU VAL VAL LEU SEQRES 11 B 351 GLN ALA LEU GLY ALA GLU ALA LEU PRO PRO GLU CYS ARG SEQRES 12 B 351 ALA LYS ALA ARG VAL VAL TYR GLN SER THR SER ALA ARG SEQRES 13 B 351 ALA GLU LEU PRO LYS SER ALA ARG GLN LEU ARG ALA VAL SEQRES 14 B 351 MET VAL GLY HIS LEU ARG GLN VAL LYS SER PRO GLN THR SEQRES 15 B 351 LEU PHE ASP ALA ALA ARG LEU LEU CYS GLY ARG GLU ASP SEQRES 16 B 351 ILE ARG ILE ASP HIS ILE GLY ASP ALA GLY ASP ALA GLY SEQRES 17 B 351 LEU GLY GLU LEU ALA ARG ALA LEU ALA SER ASP CYS PRO SEQRES 18 B 351 GLY TYR ARG TRP LEU GLY ALA LEU PRO HIS ALA GLN THR SEQRES 19 B 351 ARG GLN ARG ILE GLN ARG ALA HIS VAL LEU VAL HIS THR SEQRES 20 B 351 SER ALA LEU GLU GLY GLY ALA HIS VAL ILE MET GLU ALA SEQRES 21 B 351 VAL ARG SER GLY THR PRO VAL LEU ALA SER ARG VAL PRO SEQRES 22 B 351 GLY ASN VAL GLY MET LEU GLY ASN ASP TYR ALA GLY TYR SEQRES 23 B 351 PHE PRO HIS GLY ASP ALA ALA ALA LEU ALA ALA LEU LEU SEQRES 24 B 351 GLU ALA CYS ARG ALA GLY GLN GLY SER LYS ASP ARG ALA SEQRES 25 B 351 ALA GLY LEU LEU ASP SER LEU ARG THR GLN CYS ALA LEU SEQRES 26 B 351 ARG ALA PRO LEU PHE ASP PRO ARG ALA GLU GLN ALA ALA SEQRES 27 B 351 LEU PHE GLN LEU LEU ASN GLU LEU GLN PRO PRO PRO PRO SEQRES 1 C 351 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 C 351 LEU VAL PRO ARG GLY SER HIS MET SER ASN PRO SER LEU SEQRES 3 C 351 VAL ILE VAL SER PRO ALA LEU PRO GLY ALA ASN ASN GLY SEQRES 4 C 351 ASN TRP ARG THR ALA GLN ARG TRP LYS ALA LEU LEU SER SEQRES 5 C 351 PRO VAL CYS SER ALA ARG VAL VAL GLN GLN TRP PRO ASP SEQRES 6 C 351 ALA ASP ALA SER ALA ASP THR VAL MET LEU ALA LEU HIS SEQRES 7 C 351 ALA ARG ARG SER ALA GLU SER ILE ALA HIS TRP ALA HIS SEQRES 8 C 351 ALA HIS PRO GLY ARG GLY LEU GLY VAL VAL LEU THR GLY SEQRES 9 C 351 THR ASP LEU TYR GLN ASP ILE GLY SER ASP PRO GLN ALA SEQRES 10 C 351 GLN ARG SER LEU GLN LEU ALA GLN ARG LEU VAL VAL LEU SEQRES 11 C 351 GLN ALA LEU GLY ALA GLU ALA LEU PRO PRO GLU CYS ARG SEQRES 12 C 351 ALA LYS ALA ARG VAL VAL TYR GLN SER THR SER ALA ARG SEQRES 13 C 351 ALA GLU LEU PRO LYS SER ALA ARG GLN LEU ARG ALA VAL SEQRES 14 C 351 MET VAL GLY HIS LEU ARG GLN VAL LYS SER PRO GLN THR SEQRES 15 C 351 LEU PHE ASP ALA ALA ARG LEU LEU CYS GLY ARG GLU ASP SEQRES 16 C 351 ILE ARG ILE ASP HIS ILE GLY ASP ALA GLY ASP ALA GLY SEQRES 17 C 351 LEU GLY GLU LEU ALA ARG ALA LEU ALA SER ASP CYS PRO SEQRES 18 C 351 GLY TYR ARG TRP LEU GLY ALA LEU PRO HIS ALA GLN THR SEQRES 19 C 351 ARG GLN ARG ILE GLN ARG ALA HIS VAL LEU VAL HIS THR SEQRES 20 C 351 SER ALA LEU GLU GLY GLY ALA HIS VAL ILE MET GLU ALA SEQRES 21 C 351 VAL ARG SER GLY THR PRO VAL LEU ALA SER ARG VAL PRO SEQRES 22 C 351 GLY ASN VAL GLY MET LEU GLY ASN ASP TYR ALA GLY TYR SEQRES 23 C 351 PHE PRO HIS GLY ASP ALA ALA ALA LEU ALA ALA LEU LEU SEQRES 24 C 351 GLU ALA CYS ARG ALA GLY GLN GLY SER LYS ASP ARG ALA SEQRES 25 C 351 ALA GLY LEU LEU ASP SER LEU ARG THR GLN CYS ALA LEU SEQRES 26 C 351 ARG ALA PRO LEU PHE ASP PRO ARG ALA GLU GLN ALA ALA SEQRES 27 C 351 LEU PHE GLN LEU LEU ASN GLU LEU GLN PRO PRO PRO PRO HET NA A 401 1 HET CL B 401 1 HET CL C 401 1 HET NA C 402 1 HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION FORMUL 4 NA 2(NA 1+) FORMUL 5 CL 2(CL 1-) FORMUL 8 HOH *418(H2 O) HELIX 1 AA1 ASN A 20 SER A 32 1 13 HELIX 2 AA2 ASP A 47 ASP A 51 5 5 HELIX 3 AA3 SER A 62 HIS A 73 1 12 HELIX 4 AA4 ASP A 94 ALA A 104 1 11 HELIX 5 AA5 LEU A 113 LEU A 118 1 6 HELIX 6 AA6 PRO A 119 ARG A 123 5 5 HELIX 7 AA7 PRO A 160 LEU A 170 1 11 HELIX 8 AA8 GLU A 191 CYS A 200 1 10 HELIX 9 AA9 PRO A 210 ALA A 221 1 12 HELIX 10 AB1 HIS A 235 ARG A 242 1 8 HELIX 11 AB2 VAL A 252 GLY A 260 1 9 HELIX 12 AB3 ASP A 271 GLY A 285 1 15 HELIX 13 AB4 LEU A 295 ALA A 307 1 13 HELIX 14 AB5 PRO A 308 PHE A 310 5 3 HELIX 15 AB6 ASP A 311 GLN A 327 1 17 HELIX 16 AB7 GLY B 19 SER B 32 1 14 HELIX 17 AB8 ASP B 47 ASP B 51 5 5 HELIX 18 AB9 SER B 62 HIS B 73 1 12 HELIX 19 AC1 GLY B 84 ASP B 90 1 7 HELIX 20 AC2 ASP B 94 ALA B 104 1 11 HELIX 21 AC3 LEU B 113 LEU B 118 5 6 HELIX 22 AC4 PRO B 119 ARG B 123 5 5 HELIX 23 AC5 PRO B 160 LEU B 170 1 11 HELIX 24 AC6 GLY B 190 CYS B 200 1 11 HELIX 25 AC7 PRO B 210 ALA B 221 1 12 HELIX 26 AC8 HIS B 235 ARG B 242 1 8 HELIX 27 AC9 VAL B 252 GLY B 260 1 9 HELIX 28 AD1 ASP B 271 GLY B 285 1 15 HELIX 29 AD2 LEU B 295 ALA B 307 1 13 HELIX 30 AD3 PRO B 308 PHE B 310 5 3 HELIX 31 AD4 ASP B 311 GLN B 327 1 17 HELIX 32 AD5 GLY C 19 SER C 32 1 14 HELIX 33 AD6 PRO C 33 CYS C 35 5 3 HELIX 34 AD7 SER C 62 HIS C 73 1 12 HELIX 35 AD8 GLY C 84 GLN C 89 1 6 HELIX 36 AD9 ASP C 94 ALA C 104 1 11 HELIX 37 AE1 LEU C 113 LEU C 118 5 6 HELIX 38 AE2 PRO C 119 ARG C 123 5 5 HELIX 39 AE3 GLN C 161 LEU C 170 1 10 HELIX 40 AE4 GLY C 190 CYS C 200 1 11 HELIX 41 AE5 PRO C 210 ALA C 221 1 12 HELIX 42 AE6 HIS C 235 SER C 243 1 9 HELIX 43 AE7 VAL C 252 GLY C 260 1 9 HELIX 44 AE8 ASP C 271 GLN C 286 1 16 HELIX 45 AE9 GLY C 294 ALA C 307 1 14 HELIX 46 AF1 PRO C 308 PHE C 310 5 3 HELIX 47 AF2 ASP C 311 GLN C 327 1 17 SHEET 1 AA1 6 SER A 36 VAL A 40 0 SHEET 2 AA1 6 SER A 5 VAL A 9 1 N ILE A 8 O ARG A 38 SHEET 3 AA1 6 VAL A 53 LEU A 57 1 O LEU A 55 N VAL A 7 SHEET 4 AA1 6 LEU A 78 VAL A 81 1 O VAL A 81 N ALA A 56 SHEET 5 AA1 6 ARG A 106 VAL A 109 1 O ARG A 106 N VAL A 80 SHEET 6 AA1 6 ALA A 126 VAL A 128 1 O ARG A 127 N VAL A 109 SHEET 1 AA2 6 TYR A 203 GLY A 207 0 SHEET 2 AA2 6 ILE A 176 ILE A 181 1 N HIS A 180 O ARG A 204 SHEET 3 AA2 6 LEU A 146 VAL A 151 1 N ALA A 148 O ARG A 177 SHEET 4 AA2 6 VAL A 223 HIS A 226 1 O VAL A 225 N VAL A 149 SHEET 5 AA2 6 VAL A 247 SER A 250 1 O LEU A 248 N LEU A 224 SHEET 6 AA2 6 TYR A 266 PHE A 267 1 O PHE A 267 N ALA A 249 SHEET 1 AA3 6 SER B 36 VAL B 40 0 SHEET 2 AA3 6 SER B 5 VAL B 9 1 N ILE B 8 O VAL B 40 SHEET 3 AA3 6 VAL B 53 LEU B 57 1 O LEU B 57 N VAL B 9 SHEET 4 AA3 6 LEU B 78 VAL B 81 1 O VAL B 81 N ALA B 56 SHEET 5 AA3 6 ARG B 106 VAL B 109 1 O ARG B 106 N VAL B 80 SHEET 6 AA3 6 ALA B 126 VAL B 128 1 O ARG B 127 N LEU B 107 SHEET 1 AA4 6 TYR B 203 GLY B 207 0 SHEET 2 AA4 6 ILE B 176 ILE B 181 1 N HIS B 180 O ARG B 204 SHEET 3 AA4 6 LEU B 146 VAL B 151 1 N ALA B 148 O ARG B 177 SHEET 4 AA4 6 VAL B 223 HIS B 226 1 O VAL B 225 N VAL B 149 SHEET 5 AA4 6 VAL B 247 SER B 250 1 O LEU B 248 N LEU B 224 SHEET 6 AA4 6 TYR B 266 PHE B 267 1 O PHE B 267 N ALA B 249 SHEET 1 AA5 6 SER C 36 VAL C 40 0 SHEET 2 AA5 6 SER C 5 VAL C 9 1 N ILE C 8 O VAL C 40 SHEET 3 AA5 6 VAL C 53 LEU C 57 1 O LEU C 57 N VAL C 9 SHEET 4 AA5 6 LEU C 78 VAL C 81 1 O GLY C 79 N MET C 54 SHEET 5 AA5 6 ARG C 106 VAL C 109 1 O VAL C 108 N VAL C 80 SHEET 6 AA5 6 ALA C 126 VAL C 128 1 O ARG C 127 N LEU C 107 SHEET 1 AA6 6 TYR C 203 GLY C 207 0 SHEET 2 AA6 6 ILE C 176 ILE C 181 1 N HIS C 180 O ARG C 204 SHEET 3 AA6 6 LEU C 146 MET C 150 1 N MET C 150 O ILE C 181 SHEET 4 AA6 6 VAL C 223 HIS C 226 1 O VAL C 225 N VAL C 149 SHEET 5 AA6 6 VAL C 247 SER C 250 1 O LEU C 248 N LEU C 224 SHEET 6 AA6 6 TYR C 266 PHE C 267 1 O PHE C 267 N ALA C 249 SSBOND 1 CYS B 171 CYS B 200 1555 1555 2.02 LINK O SER A 32 NA NA A 401 1555 1555 2.59 LINK O CYS A 35 NA NA A 401 1555 1555 2.46 LINK NA NA A 401 O HOH A 600 1555 1555 2.98 LINK NA NA A 401 O HOH A 622 1555 1555 2.68 LINK NA NA A 401 O HOH A 625 1555 1555 2.46 LINK O ALA C 197 NA NA C 402 1555 1555 2.69 LINK O CYS C 200 NA NA C 402 1555 1555 2.46 LINK O PRO C 201 NA NA C 402 1555 1555 2.77 LINK O TYR C 203 NA NA C 402 1555 1555 2.53 LINK NA NA C 402 O HOH C 523 1555 1555 2.40 CISPEP 1 TRP A 43 PRO A 44 0 6.41 CISPEP 2 TRP B 43 PRO B 44 0 6.83 CISPEP 3 TRP C 43 PRO C 44 0 28.37 CRYST1 93.000 68.560 93.570 90.00 118.13 90.00 P 1 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010753 0.000000 0.005749 0.00000 SCALE2 0.000000 0.014586 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012119 0.00000