HEADER MEMBRANE PROTEIN 30-NOV-22 8FBY TITLE CRYSTAL STRUCTURE OF PLVAP CC1 DETERMINED BY SULFUR SAD COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLASMALEMMA VESICLE-ASSOCIATED PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: MECA-32 ANTIGEN,PLASMALEMMA VESICLE PROTEIN 1,PV-1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: PLVAP, PV1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ENDOTHELIAL CELL-SPECIFIC MEMBRANE PROTEIN, ENDOTHELIAL FENESTRAE, KEYWDS 2 MICROVASCULAR PERMEABILITY, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.H.CHANG,F.L.HSIEH,S.B.GABELLI,J.NATHANS REVDAT 2 12-APR-23 8FBY 1 JRNL REVDAT 1 22-MAR-23 8FBY 0 JRNL AUTH T.H.CHANG,F.L.HSIEH,X.GU,P.M.SMALLWOOD,J.M.KAVRAN, JRNL AUTH 2 S.B.GABELLI,J.NATHANS JRNL TITL STRUCTURAL INSIGHTS INTO PLASMALEMMA VESICLE-ASSOCIATED JRNL TITL 2 PROTEIN (PLVAP): IMPLICATIONS FOR VASCULAR ENDOTHELIAL JRNL TITL 3 DIAPHRAGMS AND FENESTRAE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 120 03120 2023 JRNL REFN ESSN 1091-6490 JRNL PMID 36996108 JRNL DOI 10.1073/PNAS.2221103120 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 90.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 22700 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 1122 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 11 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.52 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.15 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2859 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2497 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2730 REMARK 3 BIN R VALUE (WORKING SET) : 0.2472 REMARK 3 BIN FREE R VALUE : 0.2995 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.51 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 129 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2827 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 181 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -18.36930 REMARK 3 B22 (A**2) : -6.30060 REMARK 3 B33 (A**2) : 24.66990 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.340 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.311 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.235 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.285 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.228 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.894 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.865 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2858 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3805 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1169 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 493 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2858 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 368 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3271 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.17 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.61 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 20.15 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 19.1513 48.8992 79.8780 REMARK 3 T TENSOR REMARK 3 T11: -0.0031 T22: 0.0087 REMARK 3 T33: -0.0278 T12: -0.0411 REMARK 3 T13: -0.0081 T23: -0.0454 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 1.0015 REMARK 3 L33: 9.9651 L12: -0.3537 REMARK 3 L13: -0.9301 L23: 3.4396 REMARK 3 S TENSOR REMARK 3 S11: 0.0836 S12: 0.0854 S13: -0.0717 REMARK 3 S21: -0.0314 S22: -0.2166 S23: 0.0346 REMARK 3 S31: 0.0541 S32: -0.8521 S33: 0.1330 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 22.0987 45.8434 80.9363 REMARK 3 T TENSOR REMARK 3 T11: 0.0308 T22: -0.0517 REMARK 3 T33: -0.0601 T12: -0.0287 REMARK 3 T13: 0.0020 T23: -0.0309 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.7095 REMARK 3 L33: 11.8129 L12: -0.3939 REMARK 3 L13: -1.6231 L23: 2.9825 REMARK 3 S TENSOR REMARK 3 S11: -0.0248 S12: 0.0378 S13: -0.0851 REMARK 3 S21: 0.0430 S22: -0.0251 S23: 0.0464 REMARK 3 S31: 0.3784 S32: -0.2906 S33: 0.0499 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): 30.1535 45.7337 98.1030 REMARK 3 T TENSOR REMARK 3 T11: 0.0129 T22: -0.0992 REMARK 3 T33: -0.0447 T12: 0.0327 REMARK 3 T13: 0.0168 T23: 0.0312 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.9630 REMARK 3 L33: 12.9874 L12: 0.3957 REMARK 3 L13: -1.2022 L23: -3.9561 REMARK 3 S TENSOR REMARK 3 S11: 0.0425 S12: -0.0370 S13: -0.0787 REMARK 3 S21: -0.0469 S22: 0.0073 S23: 0.0760 REMARK 3 S31: 0.3239 S32: 0.2227 S33: -0.0498 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { D|* } REMARK 3 ORIGIN FOR THE GROUP (A): 33.0261 46.9224 102.8660 REMARK 3 T TENSOR REMARK 3 T11: 0.0163 T22: -0.0038 REMARK 3 T33: 0.0002 T12: 0.0527 REMARK 3 T13: 0.0191 T23: 0.0711 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 2.1233 REMARK 3 L33: 11.1808 L12: 0.0850 REMARK 3 L13: -0.3254 L23: -5.1879 REMARK 3 S TENSOR REMARK 3 S11: -0.0706 S12: -0.0941 S13: -0.0893 REMARK 3 S21: 0.0279 S22: -0.2305 S23: -0.0997 REMARK 3 S31: 0.0125 S32: 0.5271 S33: 0.3011 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8FBY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-DEC-22. REMARK 100 THE DEPOSITION ID IS D_1000270393. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.7712 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22760 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 90.830 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 60.40 REMARK 200 R MERGE (I) : 0.12200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 37.80 REMARK 200 R MERGE FOR SHELL (I) : 0.34500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM MALONATE, PH 5.0 AND 20% REMARK 280 PEG3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 17.79350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 90.82350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.11600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 90.82350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 17.79350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.11600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 LEU A 89 REMARK 465 ASP A 90 REMARK 465 GLN A 91 REMARK 465 GLY B -3 REMARK 465 PRO B -2 REMARK 465 GLY B -1 REMARK 465 THR B 0 REMARK 465 LEU B 89 REMARK 465 ASP B 90 REMARK 465 GLN B 91 REMARK 465 GLY C -3 REMARK 465 GLN C 91 REMARK 465 GLY D -3 REMARK 465 PRO D -2 REMARK 465 GLY D -1 REMARK 465 THR D 0 REMARK 465 SER D 1 REMARK 465 ARG D 2 REMARK 465 GLN D 3 REMARK 465 ASP D 90 REMARK 465 GLN D 91 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 32 O HOH B 101 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO B 88 N PRO B 88 CA 0.232 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 88 C - N - CA ANGL. DEV. = 19.0 DEGREES REMARK 500 PRO B 88 CA - N - CD ANGL. DEV. = -11.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 87 80.09 57.83 REMARK 500 ARG B 2 -81.21 -90.72 REMARK 500 THR C 0 13.22 -158.20 REMARK 500 SER C 1 -153.34 -127.83 REMARK 500 CYS C 4 21.34 -73.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 148 DISTANCE = 7.23 ANGSTROMS REMARK 525 HOH B 146 DISTANCE = 6.55 ANGSTROMS DBREF 8FBY A 3 91 UNP Q91VC4 PLVAP_MOUSE 141 229 DBREF 8FBY B 3 91 UNP Q91VC4 PLVAP_MOUSE 141 229 DBREF 8FBY C 3 91 UNP Q91VC4 PLVAP_MOUSE 141 229 DBREF 8FBY D 3 91 UNP Q91VC4 PLVAP_MOUSE 141 229 SEQADV 8FBY GLY A -3 UNP Q91VC4 EXPRESSION TAG SEQADV 8FBY PRO A -2 UNP Q91VC4 EXPRESSION TAG SEQADV 8FBY GLY A -1 UNP Q91VC4 EXPRESSION TAG SEQADV 8FBY THR A 0 UNP Q91VC4 EXPRESSION TAG SEQADV 8FBY SER A 1 UNP Q91VC4 EXPRESSION TAG SEQADV 8FBY ARG A 2 UNP Q91VC4 EXPRESSION TAG SEQADV 8FBY GLY B -3 UNP Q91VC4 EXPRESSION TAG SEQADV 8FBY PRO B -2 UNP Q91VC4 EXPRESSION TAG SEQADV 8FBY GLY B -1 UNP Q91VC4 EXPRESSION TAG SEQADV 8FBY THR B 0 UNP Q91VC4 EXPRESSION TAG SEQADV 8FBY SER B 1 UNP Q91VC4 EXPRESSION TAG SEQADV 8FBY ARG B 2 UNP Q91VC4 EXPRESSION TAG SEQADV 8FBY GLY C -3 UNP Q91VC4 EXPRESSION TAG SEQADV 8FBY PRO C -2 UNP Q91VC4 EXPRESSION TAG SEQADV 8FBY GLY C -1 UNP Q91VC4 EXPRESSION TAG SEQADV 8FBY THR C 0 UNP Q91VC4 EXPRESSION TAG SEQADV 8FBY SER C 1 UNP Q91VC4 EXPRESSION TAG SEQADV 8FBY ARG C 2 UNP Q91VC4 EXPRESSION TAG SEQADV 8FBY GLY D -3 UNP Q91VC4 EXPRESSION TAG SEQADV 8FBY PRO D -2 UNP Q91VC4 EXPRESSION TAG SEQADV 8FBY GLY D -1 UNP Q91VC4 EXPRESSION TAG SEQADV 8FBY THR D 0 UNP Q91VC4 EXPRESSION TAG SEQADV 8FBY SER D 1 UNP Q91VC4 EXPRESSION TAG SEQADV 8FBY ARG D 2 UNP Q91VC4 EXPRESSION TAG SEQRES 1 A 95 GLY PRO GLY THR SER ARG GLN CYS GLN GLU GLN LEU LYS SEQRES 2 A 95 GLU VAL ASN LYS THR CYS GLU ALA LEU LEU PHE LYS LEU SEQRES 3 A 95 GLY GLU LYS VAL LYS THR LEU GLU MET GLU VAL ALA LYS SEQRES 4 A 95 GLU LYS ALA VAL CYS SER LYS ASP LYS GLU SER LEU LEU SEQRES 5 A 95 ALA GLY LYS ARG GLN THR GLU GLU GLN LEU GLU ALA CYS SEQRES 6 A 95 GLY LYS ALA ARG GLU ARG GLN GLN GLN GLU GLN GLN VAL SEQRES 7 A 95 THR GLU GLU ASN LEU ARG LYS VAL GLN SER LEU CYS ILE SEQRES 8 A 95 PRO LEU ASP GLN SEQRES 1 B 95 GLY PRO GLY THR SER ARG GLN CYS GLN GLU GLN LEU LYS SEQRES 2 B 95 GLU VAL ASN LYS THR CYS GLU ALA LEU LEU PHE LYS LEU SEQRES 3 B 95 GLY GLU LYS VAL LYS THR LEU GLU MET GLU VAL ALA LYS SEQRES 4 B 95 GLU LYS ALA VAL CYS SER LYS ASP LYS GLU SER LEU LEU SEQRES 5 B 95 ALA GLY LYS ARG GLN THR GLU GLU GLN LEU GLU ALA CYS SEQRES 6 B 95 GLY LYS ALA ARG GLU ARG GLN GLN GLN GLU GLN GLN VAL SEQRES 7 B 95 THR GLU GLU ASN LEU ARG LYS VAL GLN SER LEU CYS ILE SEQRES 8 B 95 PRO LEU ASP GLN SEQRES 1 C 95 GLY PRO GLY THR SER ARG GLN CYS GLN GLU GLN LEU LYS SEQRES 2 C 95 GLU VAL ASN LYS THR CYS GLU ALA LEU LEU PHE LYS LEU SEQRES 3 C 95 GLY GLU LYS VAL LYS THR LEU GLU MET GLU VAL ALA LYS SEQRES 4 C 95 GLU LYS ALA VAL CYS SER LYS ASP LYS GLU SER LEU LEU SEQRES 5 C 95 ALA GLY LYS ARG GLN THR GLU GLU GLN LEU GLU ALA CYS SEQRES 6 C 95 GLY LYS ALA ARG GLU ARG GLN GLN GLN GLU GLN GLN VAL SEQRES 7 C 95 THR GLU GLU ASN LEU ARG LYS VAL GLN SER LEU CYS ILE SEQRES 8 C 95 PRO LEU ASP GLN SEQRES 1 D 95 GLY PRO GLY THR SER ARG GLN CYS GLN GLU GLN LEU LYS SEQRES 2 D 95 GLU VAL ASN LYS THR CYS GLU ALA LEU LEU PHE LYS LEU SEQRES 3 D 95 GLY GLU LYS VAL LYS THR LEU GLU MET GLU VAL ALA LYS SEQRES 4 D 95 GLU LYS ALA VAL CYS SER LYS ASP LYS GLU SER LEU LEU SEQRES 5 D 95 ALA GLY LYS ARG GLN THR GLU GLU GLN LEU GLU ALA CYS SEQRES 6 D 95 GLY LYS ALA ARG GLU ARG GLN GLN GLN GLU GLN GLN VAL SEQRES 7 D 95 THR GLU GLU ASN LEU ARG LYS VAL GLN SER LEU CYS ILE SEQRES 8 D 95 PRO LEU ASP GLN FORMUL 5 HOH *181(H2 O) HELIX 1 AA1 SER A 1 VAL A 11 1 11 HELIX 2 AA2 ASN A 12 CYS A 86 1 75 HELIX 3 AA3 GLN B 3 SER B 84 1 82 HELIX 4 AA4 ARG C 2 SER C 84 1 83 HELIX 5 AA5 GLU D 6 CYS D 86 1 81 SSBOND 1 CYS A 4 CYS B 4 1555 1555 2.04 SSBOND 2 CYS A 15 CYS B 15 1555 1555 2.06 SSBOND 3 CYS A 40 CYS B 40 1555 1555 2.07 SSBOND 4 CYS A 61 CYS B 61 1555 1555 2.05 SSBOND 5 CYS A 86 CYS B 86 1555 1555 1.98 SSBOND 6 CYS C 4 CYS D 4 1555 1555 2.03 SSBOND 7 CYS C 15 CYS D 15 1555 1555 2.06 SSBOND 8 CYS C 40 CYS D 40 1555 1555 2.06 SSBOND 9 CYS C 61 CYS D 61 1555 1555 2.07 SSBOND 10 CYS C 86 CYS D 86 1555 1555 2.03 CRYST1 35.587 86.232 181.647 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028100 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011597 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005505 0.00000