HEADER ISOMERASE 02-DEC-22 8FDB TITLE CRYSTAL STRUCTURE OF NAGB-II PHOSPHOSUGAR ISOMERASE FROM SHEWANELLA TITLE 2 DENITRIFICANS OS217 IN COMPLEX WITH GLUCITOLAMINE-6-PHOSPHATE AT 3.06 TITLE 3 A RESOLUTION. COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMINE-FRUCTOSE-6-PHOSPHATE TRANSAMINASE (ISOMERIZING); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: GLUTAMINE-FRUCTOSE-6-PHOSPHATE TRANSAMINASE (ISOMERIZING); COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA DENITRIFICANS OS217; SOURCE 3 ORGANISM_TAXID: 318161; SOURCE 4 STRAIN: OS217 / ATCC BAA-1090 / DSM 15013; SOURCE 5 GENE: SDEN_2705; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET24B; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: SHEWANELLA DENITRIFICANS OS217; SOURCE 12 ORGANISM_TAXID: 318161; SOURCE 13 GENE: SDEN_2705; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 17 EXPRESSION_SYSTEM_PLASMID: PET24B KEYWDS DEAMINASE ISOMERIZATION-DEAMINATION AMINO-SUGAR METABOLISM POSITIVE KEYWDS 2 COOPERATIVITY AND ALLOSTERIC ACTIVATION SUGAR-ISOMERASE DOMAIN, KEYWDS 3 ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.RODRIGUEZ-ROMERO,A.RODRIGUEZ-HERNANDEZ,J.MARCOS-VIQUEZ,I.BUSTOS- AUTHOR 2 JAIMES REVDAT 2 07-JUN-23 8FDB 1 JRNL REVDAT 1 17-MAY-23 8FDB 0 JRNL AUTH J.MARCOS-VIQUEZ,A.RODRIGUEZ-HERNANDEZ,L.I.ALVAREZ-ANORVE, JRNL AUTH 2 A.MEDINA-GARCIA,J.PLUMBRIDGE,M.L.CALCAGNO, JRNL AUTH 3 A.RODRIGUEZ-ROMERO,I.BUSTOS-JAIMES JRNL TITL SUBSTRATE BINDING IN THE ALLOSTERIC SITE MIMICS HOMOTROPIC JRNL TITL 2 COOPERATIVITY IN THE SIS-FOLD GLUCOSAMINE-6-PHOSPHATE JRNL TITL 3 DEAMINASES. JRNL REF PROTEIN SCI. V. 32 E4651 2023 JRNL REFN ESSN 1469-896X JRNL PMID 37145875 JRNL DOI 10.1002/PRO.4651 REMARK 2 REMARK 2 RESOLUTION. 3.06 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.06 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 13389 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.160 REMARK 3 FREE R VALUE TEST SET COUNT : 1093 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.9500 - 6.1100 0.99 1620 146 0.1676 0.1755 REMARK 3 2 6.1100 - 4.8500 1.00 1579 141 0.2024 0.2423 REMARK 3 3 4.8500 - 4.2400 0.98 1508 134 0.1792 0.2090 REMARK 3 4 4.2400 - 3.8500 0.99 1536 144 0.1992 0.2149 REMARK 3 5 3.8500 - 3.5800 0.98 1492 132 0.2341 0.3137 REMARK 3 6 3.5800 - 3.3700 1.00 1533 132 0.2218 0.2609 REMARK 3 7 3.3700 - 3.2000 1.00 1508 142 0.2352 0.2769 REMARK 3 8 3.2000 - 3.0600 0.99 1520 122 0.2730 0.3593 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.49 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 5062 REMARK 3 ANGLE : 1.184 6888 REMARK 3 CHIRALITY : 0.070 853 REMARK 3 PLANARITY : 0.010 873 REMARK 3 DIHEDRAL : 5.390 738 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8FDB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-DEC-22. REMARK 100 THE DEPOSITION ID IS D_1000268363. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-SEP-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5419 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 200K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14320 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 49.480 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.16500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.06 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.38900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: BALBES REMARK 200 REMARK 200 REMARK: BYPYRAMIDAL PLATES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM TRIS-HCL, PH 8.5, WITH 1MM 2 REMARK 280 -DEOXI-2-AMINO GLUCITOL 6-PHOSPHATE (GLCNOL6P), VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.50400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 85.50400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.94250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 56.57100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.94250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 56.57100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 85.50400 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.94250 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 56.57100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 85.50400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.94250 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 56.57100 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 2 OG1 CG2 REMARK 470 ILE A 6 CG1 CG2 CD1 REMARK 470 GLN A 9 CG CD OE1 NE2 REMARK 470 GLU A 38 CG CD OE1 OE2 REMARK 470 GLU A 172 CG CD OE1 OE2 REMARK 470 GLU A 176 CG CD OE1 OE2 REMARK 470 LYS A 251 CG CD CE NZ REMARK 470 LYS A 252 CG CD CE NZ REMARK 470 LYS A 276 CG CD CE NZ REMARK 470 ASN A 281 CG OD1 ND2 REMARK 470 ASP A 291 CG OD1 OD2 REMARK 470 LYS A 322 CG CD CE NZ REMARK 470 LYS A 327 CG CD CE NZ REMARK 470 MET B 1 CG SD CE REMARK 470 LYS B 252 CG CD CE NZ REMARK 470 ASN B 274 CG OD1 ND2 REMARK 470 LYS B 276 CG CD CE NZ REMARK 470 LYS B 327 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 40 69.47 61.69 REMARK 500 THR A 151 -77.26 -135.28 REMARK 500 HIS A 243 44.63 -96.78 REMARK 500 ASP A 262 -158.82 -128.67 REMARK 500 ALA A 324 109.28 -55.22 REMARK 500 THR B 2 -74.34 -110.90 REMARK 500 LYS B 40 70.44 61.40 REMARK 500 ASP B 135 -70.40 -73.26 REMARK 500 THR B 151 -77.43 -135.14 REMARK 500 HIS B 243 48.15 -100.76 REMARK 500 LYS B 252 71.08 65.20 REMARK 500 ASP B 262 -149.44 -115.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 504 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 61 OH REMARK 620 2 AGP B 702 O1P 87.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 503 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 96 O REMARK 620 2 AGP A 501 O2P 113.0 REMARK 620 N 1 DBREF 8FDB A 1 333 UNP Q12KP2 Q12KP2_SHEDO 1 333 DBREF 8FDB B 1 333 UNP Q12KP2 Q12KP2_SHEDO 1 333 SEQRES 1 A 333 MET THR THR ASN THR ILE MET GLU GLN GLU ALA ARG THR SEQRES 2 A 333 ALA PRO GLN LYS ILE ALA GLU GLN LEU LEU ALA ASN ASP SEQRES 3 A 333 ALA ILE THR GLU SER LEU GLY SER VAL LEU ARG GLU PHE SEQRES 4 A 333 LYS PRO LYS PHE VAL MET ILE VAL GLY ARG GLY SER SER SEQRES 5 A 333 ASP HIS ALA GLY VAL PHE ALA LYS TYR LEU PHE GLU ILE SEQRES 6 A 333 GLU ALA SER ILE PRO THR PHE ALA ALA ALA PRO SER VAL SEQRES 7 A 333 ALA SER VAL TYR GLY LYS THR LEU LYS LEU ALA GLY GLY SEQRES 8 A 333 LEU VAL ILE VAL ILE SER GLN SER GLY ARG SER PRO ASP SEQRES 9 A 333 ILE LEU ALA GLN ALA ARG MET ALA LYS ASN ALA GLY ALA SEQRES 10 A 333 PHE CYS VAL ALA LEU VAL ASN ASP GLU THR ALA PRO ILE SEQRES 11 A 333 LYS ASP ILE VAL ASP VAL VAL ILE PRO LEU ARG ALA GLY SEQRES 12 A 333 GLU GLU LYS ALA VAL ALA ALA THR LYS SER TYR LEU ALA SEQRES 13 A 333 THR LEU SER ALA LEU LEU GLN VAL ALA ALA LYS TRP THR SEQRES 14 A 333 GLN ASN GLU SER LEU VAL GLU ALA VAL ASN SER LEU PRO SEQRES 15 A 333 GLN ALA LEU GLN ALA ALA VAL ASP ALA GLU PRO GLN LEU SEQRES 16 A 333 ARG ALA GLY SER LEU THR ASP VAL LYS ASN LEU VAL VAL SEQRES 17 A 333 LEU GLY ARG GLY PHE GLY TYR ALA VAL SER LYS GLU ILE SEQRES 18 A 333 ALA LEU LYS LEU LYS GLU VAL CYS ALA ILE HIS ALA GLU SEQRES 19 A 333 ALA PHE SER SER ALA GLU PHE LEU HIS GLY PRO VAL THR SEQRES 20 A 333 LEU VAL GLU LYS LYS LEU SER ILE LEU ASP VAL CYS ILE SEQRES 21 A 333 ARG ASP GLU SER TYR GLY SER HIS VAL GLU GLN ILE ALA SEQRES 22 A 333 ASN VAL LYS GLN ARG GLY ALA ASN LEU ILE HIS LEU HIS SEQRES 23 A 333 GLN THR SER ALA ASP ILE HIS PRO ARG ILE ALA PRO LEU SEQRES 24 A 333 ALA LEU LEU GLN ARG PHE TYR ILE ASP VAL ALA ALA VAL SEQRES 25 A 333 ALA ILE ALA LEU GLY ILE ASN PRO ASP LYS PRO ALA GLY SEQRES 26 A 333 LEU LYS LYS VAL THR GLN THR LEU SEQRES 1 B 333 MET THR THR ASN THR ILE MET GLU GLN GLU ALA ARG THR SEQRES 2 B 333 ALA PRO GLN LYS ILE ALA GLU GLN LEU LEU ALA ASN ASP SEQRES 3 B 333 ALA ILE THR GLU SER LEU GLY SER VAL LEU ARG GLU PHE SEQRES 4 B 333 LYS PRO LYS PHE VAL MET ILE VAL GLY ARG GLY SER SER SEQRES 5 B 333 ASP HIS ALA GLY VAL PHE ALA LYS TYR LEU PHE GLU ILE SEQRES 6 B 333 GLU ALA SER ILE PRO THR PHE ALA ALA ALA PRO SER VAL SEQRES 7 B 333 ALA SER VAL TYR GLY LYS THR LEU LYS LEU ALA GLY GLY SEQRES 8 B 333 LEU VAL ILE VAL ILE SER GLN SER GLY ARG SER PRO ASP SEQRES 9 B 333 ILE LEU ALA GLN ALA ARG MET ALA LYS ASN ALA GLY ALA SEQRES 10 B 333 PHE CYS VAL ALA LEU VAL ASN ASP GLU THR ALA PRO ILE SEQRES 11 B 333 LYS ASP ILE VAL ASP VAL VAL ILE PRO LEU ARG ALA GLY SEQRES 12 B 333 GLU GLU LYS ALA VAL ALA ALA THR LYS SER TYR LEU ALA SEQRES 13 B 333 THR LEU SER ALA LEU LEU GLN VAL ALA ALA LYS TRP THR SEQRES 14 B 333 GLN ASN GLU SER LEU VAL GLU ALA VAL ASN SER LEU PRO SEQRES 15 B 333 GLN ALA LEU GLN ALA ALA VAL ASP ALA GLU PRO GLN LEU SEQRES 16 B 333 ARG ALA GLY SER LEU THR ASP VAL LYS ASN LEU VAL VAL SEQRES 17 B 333 LEU GLY ARG GLY PHE GLY TYR ALA VAL SER LYS GLU ILE SEQRES 18 B 333 ALA LEU LYS LEU LYS GLU VAL CYS ALA ILE HIS ALA GLU SEQRES 19 B 333 ALA PHE SER SER ALA GLU PHE LEU HIS GLY PRO VAL THR SEQRES 20 B 333 LEU VAL GLU KCX LYS LEU SER ILE LEU ASP VAL CYS ILE SEQRES 21 B 333 ARG ASP GLU SER TYR GLY SER HIS VAL GLU GLN ILE ALA SEQRES 22 B 333 ASN VAL LYS GLN ARG GLY ALA ASN LEU ILE HIS LEU HIS SEQRES 23 B 333 GLN THR SER ALA ASP ILE HIS PRO ARG ILE ALA PRO LEU SEQRES 24 B 333 ALA LEU LEU GLN ARG PHE TYR ILE ASP VAL ALA ALA VAL SEQRES 25 B 333 ALA ILE ALA LEU GLY ILE ASN PRO ASP LYS PRO ALA GLY SEQRES 26 B 333 LEU LYS LYS VAL THR GLN THR LEU MODRES 8FDB KCX B 251 LYS MODIFIED RESIDUE HET KCX B 251 12 HET AGP A 501 16 HET AGP A 502 16 HET MG A 503 1 HET MG A 504 1 HET GOL B 701 6 HET AGP B 702 16 HET AGP B 703 16 HET GOL B 704 6 HETNAM KCX LYSINE NZ-CARBOXYLIC ACID HETNAM AGP 2-DEOXY-2-AMINO GLUCITOL-6-PHOSPHATE HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 KCX C7 H14 N2 O4 FORMUL 3 AGP 4(C6 H16 N O8 P) FORMUL 5 MG 2(MG 2+) FORMUL 7 GOL 2(C3 H8 O3) FORMUL 11 HOH *16(H2 O) HELIX 1 AA1 THR A 5 THR A 13 1 9 HELIX 2 AA2 THR A 13 ASN A 25 1 13 HELIX 3 AA3 ASN A 25 LYS A 40 1 16 HELIX 4 AA4 GLY A 50 SER A 68 1 19 HELIX 5 AA5 ALA A 75 VAL A 81 1 7 HELIX 6 AA6 SER A 102 ALA A 115 1 14 HELIX 7 AA7 ALA A 128 ILE A 133 5 6 HELIX 8 AA8 THR A 151 GLN A 170 1 20 HELIX 9 AA9 ASN A 171 ALA A 191 1 21 HELIX 10 AB1 ARG A 196 THR A 201 1 6 HELIX 11 AB2 GLY A 212 ALA A 230 1 19 HELIX 12 AB3 VAL A 246 LYS A 251 1 6 HELIX 13 AB4 SER A 264 ARG A 278 1 15 HELIX 14 AB5 ILE A 296 LEU A 316 1 21 HELIX 15 AB6 THR B 5 LYS B 40 1 36 HELIX 16 AB7 GLY B 50 SER B 68 1 19 HELIX 17 AB8 PRO B 76 VAL B 81 1 6 HELIX 18 AB9 SER B 102 ALA B 115 1 14 HELIX 19 AC1 ALA B 128 ILE B 133 5 6 HELIX 20 AC2 THR B 151 GLN B 170 1 20 HELIX 21 AC3 ASN B 171 ALA B 191 1 21 HELIX 22 AC4 ARG B 196 THR B 201 1 6 HELIX 23 AC5 GLY B 212 ALA B 230 1 19 HELIX 24 AC6 GLY B 244 LYS B 252 5 9 HELIX 25 AC7 SER B 264 ARG B 278 1 15 HELIX 26 AC8 ILE B 296 LEU B 316 1 21 SHEET 1 AA1 5 THR A 71 ALA A 73 0 SHEET 2 AA1 5 VAL A 44 VAL A 47 1 N ILE A 46 O PHE A 72 SHEET 3 AA1 5 LEU A 92 SER A 97 1 O ILE A 96 N VAL A 47 SHEET 4 AA1 5 PHE A 118 VAL A 123 1 O PHE A 118 N VAL A 93 SHEET 5 AA1 5 VAL A 136 PRO A 139 1 O ILE A 138 N ALA A 121 SHEET 1 AA2 4 HIS A 232 SER A 237 0 SHEET 2 AA2 4 ASN A 205 GLY A 210 1 N VAL A 208 O GLU A 234 SHEET 3 AA2 4 SER A 254 CYS A 259 1 O LEU A 256 N LEU A 209 SHEET 4 AA2 4 ASN A 281 HIS A 286 1 O LEU A 285 N ASP A 257 SHEET 1 AA3 5 THR B 71 ALA B 73 0 SHEET 2 AA3 5 VAL B 44 VAL B 47 1 N ILE B 46 O PHE B 72 SHEET 3 AA3 5 LEU B 92 SER B 97 1 O ILE B 96 N VAL B 47 SHEET 4 AA3 5 PHE B 118 VAL B 123 1 O PHE B 118 N VAL B 93 SHEET 5 AA3 5 VAL B 136 PRO B 139 1 O ILE B 138 N ALA B 121 SHEET 1 AA4 4 HIS B 232 SER B 237 0 SHEET 2 AA4 4 ASN B 205 GLY B 210 1 N VAL B 208 O GLU B 234 SHEET 3 AA4 4 SER B 254 CYS B 259 1 O VAL B 258 N LEU B 209 SHEET 4 AA4 4 ASN B 281 HIS B 286 1 O ILE B 283 N ASP B 257 LINK C GLU B 250 N KCX B 251 1555 1555 1.33 LINK C KCX B 251 N LYS B 252 1555 1555 1.33 LINK OH TYR A 61 MG MG A 504 1555 1555 2.89 LINK O ILE A 96 MG MG A 503 1555 1555 2.84 LINK O2P AGP A 501 MG MG A 503 1555 1555 2.84 LINK MG MG A 504 O1P AGP B 702 1555 1555 2.56 CRYST1 71.885 113.142 171.008 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013911 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008838 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005848 0.00000