data_8FER # _entry.id 8FER # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8FER pdb_00008fer 10.2210/pdb8fer/pdb WWPDB D_1000270471 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2024-01-24 2 'Structure model' 1 1 2024-01-31 3 'Structure model' 1 2 2024-02-14 4 'Structure model' 1 3 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation 4 3 'Structure model' citation_author 5 4 'Structure model' citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.title' 2 3 'Structure model' '_citation.country' 3 3 'Structure model' '_citation.journal_abbrev' 4 3 'Structure model' '_citation.journal_id_ASTM' 5 3 'Structure model' '_citation.journal_id_CSD' 6 3 'Structure model' '_citation.journal_id_ISSN' 7 3 'Structure model' '_citation.pdbx_database_id_DOI' 8 3 'Structure model' '_citation.pdbx_database_id_PubMed' 9 3 'Structure model' '_citation.title' 10 3 'Structure model' '_citation.year' 11 3 'Structure model' '_citation_author.identifier_ORCID' 12 3 'Structure model' '_citation_author.name' 13 4 'Structure model' '_citation.journal_volume' 14 4 'Structure model' '_citation.page_first' 15 4 'Structure model' '_citation.page_last' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8FER _pdbx_database_status.recvd_initial_deposition_date 2022-12-06 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible N # _pdbx_contact_author.id 3 _pdbx_contact_author.email jwszostak@uchicago.edu _pdbx_contact_author.name_first Jack _pdbx_contact_author.name_last Szostak _pdbx_contact_author.name_mi W. _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-4131-1203 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Fang, Z.' 1 0000-0001-8679-6633 'Zhou, L.' 2 0000-0002-0393-4787 'Szostak, J.W.' 3 0000-0003-4131-1203 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_id_ASTM JACSAT _citation.journal_id_CSD ? _citation.journal_id_ISSN 1520-5126 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 146 _citation.language ? _citation.page_first 3861 _citation.page_last 3871 _citation.title 'Unusual Base Pair between Two 2-Thiouridines and Its Implication for Nonenzymatic RNA Copying.' _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/jacs.3c11158 _citation.pdbx_database_id_PubMed 38293747 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ding, D.' 1 0000-0001-9046-7816 primary 'Fang, Z.' 2 0000-0001-8679-6633 primary 'Kim, S.C.' 3 0000-0002-2230-1774 primary ;O'Flaherty, D.K. ; 4 0000-0003-3693-6380 primary 'Jia, X.' 5 0000-0001-9094-9882 primary 'Stone, T.B.' 6 ? primary 'Zhou, L.' 7 0000-0002-0393-4787 primary 'Szostak, J.W.' 8 0000-0003-4131-1203 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RNA 16mer with two continuous s(2)U' 5092.155 2 ? ? ? ? 2 water nat water 18.015 85 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'AGAGAAG(SUR)(SUR)CUUCUCU' _entity_poly.pdbx_seq_one_letter_code_can AGAGAAGUUCUUCUCU _entity_poly.pdbx_strand_id AAA,BBB _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 A n 1 2 G n 1 3 A n 1 4 G n 1 5 A n 1 6 A n 1 7 G n 1 8 SUR n 1 9 SUR n 1 10 C n 1 11 U n 1 12 U n 1 13 C n 1 14 U n 1 15 C n 1 16 U n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 16 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 SUR 'RNA linking' n "1-(BETA-D-RIBOFURANOSYL)-2-THIO-URACIL-5'-PHOSPHATE" ? 'C9 H13 N2 O8 P S' 340.247 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 A 1 1 1 A A AAA . n A 1 2 G 2 2 2 G G AAA . n A 1 3 A 3 3 3 A A AAA . n A 1 4 G 4 4 4 G G AAA . n A 1 5 A 5 5 5 A A AAA . n A 1 6 A 6 6 6 A A AAA . n A 1 7 G 7 7 7 G G AAA . n A 1 8 SUR 8 8 8 SUR SUR AAA . n A 1 9 SUR 9 9 9 SUR SUR AAA . n A 1 10 C 10 10 10 C C AAA . n A 1 11 U 11 11 11 U U AAA . n A 1 12 U 12 12 12 U U AAA . n A 1 13 C 13 13 13 C C AAA . n A 1 14 U 14 14 14 U U AAA . n A 1 15 C 15 15 15 C C AAA . n A 1 16 U 16 16 16 U U AAA . n B 1 1 A 1 1 1 A A BBB . n B 1 2 G 2 2 2 G G BBB . n B 1 3 A 3 3 3 A A BBB . n B 1 4 G 4 4 4 G G BBB . n B 1 5 A 5 5 5 A A BBB . n B 1 6 A 6 6 6 A A BBB . n B 1 7 G 7 7 7 G G BBB . n B 1 8 SUR 8 8 8 SUR SUR BBB . n B 1 9 SUR 9 9 9 SUR SUR BBB . n B 1 10 C 10 10 10 C C BBB . n B 1 11 U 11 11 11 U U BBB . n B 1 12 U 12 12 12 U U BBB . n B 1 13 C 13 13 13 C C BBB . n B 1 14 U 14 14 14 U U BBB . n B 1 15 C 15 15 15 C C BBB . n B 1 16 U 16 16 16 U U BBB . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 101 66 HOH HOH AAA . C 2 HOH 2 102 16 HOH HOH AAA . C 2 HOH 3 103 36 HOH HOH AAA . C 2 HOH 4 104 84 HOH HOH AAA . C 2 HOH 5 105 72 HOH HOH AAA . C 2 HOH 6 106 38 HOH HOH AAA . C 2 HOH 7 107 18 HOH HOH AAA . C 2 HOH 8 108 80 HOH HOH AAA . C 2 HOH 9 109 71 HOH HOH AAA . C 2 HOH 10 110 13 HOH HOH AAA . C 2 HOH 11 111 56 HOH HOH AAA . C 2 HOH 12 112 43 HOH HOH AAA . C 2 HOH 13 113 2 HOH HOH AAA . C 2 HOH 14 114 19 HOH HOH AAA . C 2 HOH 15 115 31 HOH HOH AAA . C 2 HOH 16 116 9 HOH HOH AAA . C 2 HOH 17 117 26 HOH HOH AAA . C 2 HOH 18 118 5 HOH HOH AAA . C 2 HOH 19 119 8 HOH HOH AAA . C 2 HOH 20 120 76 HOH HOH AAA . C 2 HOH 21 121 74 HOH HOH AAA . C 2 HOH 22 122 6 HOH HOH AAA . C 2 HOH 23 123 17 HOH HOH AAA . C 2 HOH 24 124 12 HOH HOH AAA . C 2 HOH 25 125 73 HOH HOH AAA . C 2 HOH 26 126 4 HOH HOH AAA . C 2 HOH 27 127 65 HOH HOH AAA . C 2 HOH 28 128 53 HOH HOH AAA . C 2 HOH 29 129 67 HOH HOH AAA . C 2 HOH 30 130 32 HOH HOH AAA . C 2 HOH 31 131 11 HOH HOH AAA . C 2 HOH 32 132 42 HOH HOH AAA . C 2 HOH 33 133 68 HOH HOH AAA . C 2 HOH 34 134 14 HOH HOH AAA . C 2 HOH 35 135 52 HOH HOH AAA . C 2 HOH 36 136 81 HOH HOH AAA . C 2 HOH 37 137 83 HOH HOH AAA . C 2 HOH 38 138 37 HOH HOH AAA . C 2 HOH 39 139 1 HOH HOH AAA . C 2 HOH 40 140 85 HOH HOH AAA . C 2 HOH 41 141 75 HOH HOH AAA . C 2 HOH 42 142 57 HOH HOH AAA . C 2 HOH 43 143 79 HOH HOH AAA . C 2 HOH 44 144 58 HOH HOH AAA . C 2 HOH 45 145 29 HOH HOH AAA . C 2 HOH 46 146 82 HOH HOH AAA . D 2 HOH 1 101 33 HOH HOH BBB . D 2 HOH 2 102 50 HOH HOH BBB . D 2 HOH 3 103 54 HOH HOH BBB . D 2 HOH 4 104 51 HOH HOH BBB . D 2 HOH 5 105 34 HOH HOH BBB . D 2 HOH 6 106 24 HOH HOH BBB . D 2 HOH 7 107 64 HOH HOH BBB . D 2 HOH 8 108 63 HOH HOH BBB . D 2 HOH 9 109 40 HOH HOH BBB . D 2 HOH 10 110 45 HOH HOH BBB . D 2 HOH 11 111 22 HOH HOH BBB . D 2 HOH 12 112 28 HOH HOH BBB . D 2 HOH 13 113 15 HOH HOH BBB . D 2 HOH 14 114 70 HOH HOH BBB . D 2 HOH 15 115 49 HOH HOH BBB . D 2 HOH 16 116 23 HOH HOH BBB . D 2 HOH 17 117 62 HOH HOH BBB . D 2 HOH 18 118 3 HOH HOH BBB . D 2 HOH 19 119 35 HOH HOH BBB . D 2 HOH 20 120 55 HOH HOH BBB . D 2 HOH 21 121 78 HOH HOH BBB . D 2 HOH 22 122 59 HOH HOH BBB . D 2 HOH 23 123 48 HOH HOH BBB . D 2 HOH 24 124 77 HOH HOH BBB . D 2 HOH 25 125 27 HOH HOH BBB . D 2 HOH 26 126 21 HOH HOH BBB . D 2 HOH 27 127 47 HOH HOH BBB . D 2 HOH 28 128 20 HOH HOH BBB . D 2 HOH 29 129 46 HOH HOH BBB . D 2 HOH 30 130 7 HOH HOH BBB . D 2 HOH 31 131 25 HOH HOH BBB . D 2 HOH 32 132 61 HOH HOH BBB . D 2 HOH 33 133 30 HOH HOH BBB . D 2 HOH 34 134 60 HOH HOH BBB . D 2 HOH 35 135 44 HOH HOH BBB . D 2 HOH 36 136 69 HOH HOH BBB . D 2 HOH 37 137 39 HOH HOH BBB . D 2 HOH 38 138 10 HOH HOH BBB . D 2 HOH 39 139 41 HOH HOH BBB . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0267 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 8FER _cell.details ? _cell.formula_units_Z ? _cell.length_a 43.810 _cell.length_a_esd ? _cell.length_b 43.810 _cell.length_b_esd ? _cell.length_c 258.170 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 36 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8FER _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8FER _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.34 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 47.46 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;0.02 M Magnesium chloride hexahydrate, 0.002 M Cobalt(II) chloride hexahydrate, 0.05 M HEPES sodium pH 7.5, 2.0 M Ammonium sulfate, 0.001 M Spermine ; _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 293 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2022-09-14 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.037690 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ALS BEAMLINE 2.0.1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.037690 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 2.0.1 _diffrn_source.pdbx_synchrotron_site ALS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 8FER _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.54 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 14744 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.7 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 7.9 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 13.7 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.911 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.121 _reflns.pdbx_Rpim_I_all 0.043 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.986 _reflns.pdbx_CC_star 0.996 _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.113 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 1.54 _reflns_shell.d_res_low 1.57 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 4.4 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 747 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 7.6 _reflns_shell.pdbx_chi_squared 0.505 _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.461 _reflns_shell.pdbx_Rpim_I_all 0.166 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.978 _reflns_shell.pdbx_CC_star 0.994 _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.429 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] 0.002 _refine.aniso_B[1][2] 0.001 _refine.aniso_B[1][3] -0.000 _refine.aniso_B[2][2] 0.002 _refine.aniso_B[2][3] -0.000 _refine.aniso_B[3][3] -0.007 _refine.B_iso_max ? _refine.B_iso_mean 14.690 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.937 _refine.correlation_coeff_Fo_to_Fc_free 0.905 _refine.details 'Hydrogens have been added in their riding positions' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8FER _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.540 _refine.ls_d_res_low 43.065 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 14221 _refine.ls_number_reflns_R_free 725 _refine.ls_number_reflns_R_work 13496 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 96.101 _refine.ls_percent_reflns_R_free 5.098 _refine.ls_R_factor_all 0.221 _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free 0.2587 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2187 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'MASK BULK SOLVENT' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.093 _refine.pdbx_overall_ESU_R_Free 0.097 _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 1.576 _refine.overall_SU_ML 0.056 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 668 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 85 _refine_hist.number_atoms_total 753 _refine_hist.d_res_high 1.540 _refine_hist.d_res_low 43.065 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.017 0.013 744 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.031 0.020 320 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 2.757 1.914 1130 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 3.873 1.920 776 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 0.183 0.200 152 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 2.028 0.200 8 ? r_chiral_restr_other ? ? 'X-RAY DIFFRACTION' ? 0.023 0.020 362 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 116 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? 0.151 0.200 74 ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.249 0.200 373 ? r_symmetry_nbd_other ? ? 'X-RAY DIFFRACTION' ? 0.249 0.200 279 ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? 0.129 0.200 193 ? r_symmetry_nbtor_other ? ? 'X-RAY DIFFRACTION' ? 0.139 0.200 38 ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.095 0.200 6 ? r_symmetry_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.185 0.200 41 ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? 0.123 0.200 18 ? r_symmetry_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 1.593 1.467 743 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 1.592 1.467 744 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? 2.216 2.218 1129 ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 2.215 2.218 1130 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 3.249 13.897 945 ? r_lrange_it ? ? 'X-RAY DIFFRACTION' ? 3.248 13.832 943 ? r_lrange_other ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 1.540 1.580 . . 42 729 71.2569 . . . . 0.244 . . . . . . . . . . . 0.344 'X-RAY DIFFRACTION' 1.580 1.623 . . 43 912 91.1260 . . . . 0.247 . . . . . . . . . . . 0.339 'X-RAY DIFFRACTION' 1.623 1.670 . . 47 924 97.1000 . . . . 0.229 . . . . . . . . . . . 0.298 'X-RAY DIFFRACTION' 1.670 1.721 . . 52 919 97.9818 . . . . 0.214 . . . . . . . . . . . 0.232 'X-RAY DIFFRACTION' 1.721 1.778 . . 62 875 99.1534 . . . . 0.204 . . . . . . . . . . . 0.202 'X-RAY DIFFRACTION' 1.778 1.840 . . 46 894 99.3658 . . . . 0.210 . . . . . . . . . . . 0.244 'X-RAY DIFFRACTION' 1.840 1.910 . . 47 856 99.8894 . . . . 0.225 . . . . . . . . . . . 0.212 'X-RAY DIFFRACTION' 1.910 1.988 . . 45 820 99.6544 . . . . 0.237 . . . . . . . . . . . 0.281 'X-RAY DIFFRACTION' 1.988 2.076 . . 45 770 99.2692 . . . . 0.214 . . . . . . . . . . . 0.243 'X-RAY DIFFRACTION' 2.076 2.177 . . 33 774 99.8762 . . . . 0.210 . . . . . . . . . . . 0.201 'X-RAY DIFFRACTION' 2.177 2.295 . . 40 717 99.8681 . . . . 0.216 . . . . . . . . . . . 0.223 'X-RAY DIFFRACTION' 2.295 2.434 . . 35 685 99.4475 . . . . 0.215 . . . . . . . . . . . 0.276 'X-RAY DIFFRACTION' 2.434 2.602 . . 34 636 99.8510 . . . . 0.226 . . . . . . . . . . . 0.307 'X-RAY DIFFRACTION' 2.602 2.810 . . 26 611 99.3760 . . . . 0.237 . . . . . . . . . . . 0.206 'X-RAY DIFFRACTION' 2.810 3.078 . . 27 547 97.6190 . . . . 0.245 . . . . . . . . . . . 0.224 'X-RAY DIFFRACTION' 3.078 3.441 . . 29 494 94.5751 . . . . 0.239 . . . . . . . . . . . 0.284 'X-RAY DIFFRACTION' 3.441 3.972 . . 24 434 95.4167 . . . . 0.204 . . . . . . . . . . . 0.346 'X-RAY DIFFRACTION' 3.972 4.862 . . 25 389 98.1043 . . . . 0.165 . . . . . . . . . . . 0.188 'X-RAY DIFFRACTION' 4.862 6.865 . . 13 314 98.1982 . . . . 0.181 . . . . . . . . . . . 0.527 'X-RAY DIFFRACTION' 6.865 43.065 . . 10 196 95.8140 . . . . 0.261 . . . . . . . . . . . 0.270 # _struct.entry_id 8FER _struct.title '16mer self-complementary duplex RNA with two continuous s(2)U:s(2)U pairs' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8FER _struct_keywords.text 'RNA, Duplexes, UU pairs, 2-thio-U' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8FER _struct_ref.pdbx_db_accession 8FER _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8FER AAA 1 ? 16 ? 8FER 1 ? 16 ? 1 16 2 1 8FER BBB 1 ? 16 ? 8FER 1 ? 16 ? 1 16 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A G 7 "O3'" ? ? ? 1_555 A SUR 8 P ? ? AAA G 7 AAA SUR 8 1_555 ? ? ? ? ? ? ? 1.644 ? ? covale2 covale both ? A SUR 8 "O3'" ? ? ? 1_555 A SUR 9 P ? ? AAA SUR 8 AAA SUR 9 1_555 ? ? ? ? ? ? ? 1.515 ? ? covale3 covale both ? A SUR 9 "O3'" ? ? ? 1_555 A C 10 P ? ? AAA SUR 9 AAA C 10 1_555 ? ? ? ? ? ? ? 1.538 ? ? covale4 covale both ? B G 7 "O3'" ? ? ? 1_555 B SUR 8 P ? ? BBB G 7 BBB SUR 8 1_555 ? ? ? ? ? ? ? 1.566 ? ? covale5 covale both ? B SUR 8 "O3'" ? ? ? 1_555 B SUR 9 P ? ? BBB SUR 8 BBB SUR 9 1_555 ? ? ? ? ? ? ? 1.514 ? ? covale6 covale both ? B SUR 9 "O3'" ? ? ? 1_555 B C 10 P ? ? BBB SUR 9 BBB C 10 1_555 ? ? ? ? ? ? ? 1.620 ? ? hydrog1 hydrog ? ? A A 1 N1 ? ? ? 1_555 B U 16 N3 ? ? AAA A 1 BBB U 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A A 1 N6 ? ? ? 1_555 B U 16 O4 ? ? AAA A 1 BBB U 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 2 N1 ? ? ? 1_555 B C 15 N3 ? ? AAA G 2 BBB C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N2 ? ? ? 1_555 B C 15 O2 ? ? AAA G 2 BBB C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 O6 ? ? ? 1_555 B C 15 N4 ? ? AAA G 2 BBB C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A A 3 N1 ? ? ? 1_555 B U 14 N3 ? ? AAA A 3 BBB U 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 3 N6 ? ? ? 1_555 B U 14 O4 ? ? AAA A 3 BBB U 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 4 N1 ? ? ? 1_555 B C 13 N3 ? ? AAA G 4 BBB C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 N2 ? ? ? 1_555 B C 13 O2 ? ? AAA G 4 BBB C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 O6 ? ? ? 1_555 B C 13 N4 ? ? AAA G 4 BBB C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A A 5 N1 ? ? ? 1_555 B U 12 N3 ? ? AAA A 5 BBB U 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A A 5 N6 ? ? ? 1_555 B U 12 O4 ? ? AAA A 5 BBB U 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 6 N1 ? ? ? 1_555 B U 11 N3 ? ? AAA A 6 BBB U 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A A 6 N6 ? ? ? 1_555 B U 11 O4 ? ? AAA A 6 BBB U 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 7 N1 ? ? ? 1_555 B C 10 N3 ? ? AAA G 7 BBB C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 7 N2 ? ? ? 1_555 B C 10 O2 ? ? AAA G 7 BBB C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 7 O6 ? ? ? 1_555 B C 10 N4 ? ? AAA G 7 BBB C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A SUR 8 O4 ? ? ? 1_555 B SUR 9 N3 ? ? AAA SUR 8 BBB SUR 9 1_555 ? ? ? ? ? ? 'SUR-SUR MISPAIR' ? ? ? hydrog19 hydrog ? ? A SUR 9 O4 ? ? ? 1_555 B SUR 8 N3 ? ? AAA SUR 9 BBB SUR 8 1_555 ? ? ? ? ? ? 'SUR-SUR MISPAIR' ? ? ? hydrog20 hydrog ? ? A C 10 N3 ? ? ? 1_555 B G 7 N1 ? ? AAA C 10 BBB G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 10 N4 ? ? ? 1_555 B G 7 O6 ? ? AAA C 10 BBB G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 10 O2 ? ? ? 1_555 B G 7 N2 ? ? AAA C 10 BBB G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A U 11 N3 ? ? ? 1_555 B A 6 N1 ? ? AAA U 11 BBB A 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A U 11 O4 ? ? ? 1_555 B A 6 N6 ? ? AAA U 11 BBB A 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A U 12 N3 ? ? ? 1_555 B A 5 N1 ? ? AAA U 12 BBB A 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A U 12 O4 ? ? ? 1_555 B A 5 N6 ? ? AAA U 12 BBB A 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 13 N3 ? ? ? 1_555 B G 4 N1 ? ? AAA C 13 BBB G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 13 N4 ? ? ? 1_555 B G 4 O6 ? ? AAA C 13 BBB G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 13 O2 ? ? ? 1_555 B G 4 N2 ? ? AAA C 13 BBB G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A U 14 N3 ? ? ? 1_555 B A 3 N1 ? ? AAA U 14 BBB A 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A U 14 O4 ? ? ? 1_555 B A 3 N6 ? ? AAA U 14 BBB A 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 15 N3 ? ? ? 1_555 B G 2 N1 ? ? AAA C 15 BBB G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 15 N4 ? ? ? 1_555 B G 2 O6 ? ? AAA C 15 BBB G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 15 O2 ? ? ? 1_555 B G 2 N2 ? ? AAA C 15 BBB G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A U 16 N3 ? ? ? 1_555 B A 1 N1 ? ? AAA U 16 BBB A 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A U 16 O4 ? ? ? 1_555 B A 1 N6 ? ? AAA U 16 BBB A 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 P AAA G 7 ? ? "O5'" AAA G 7 ? ? 1.654 1.593 0.061 0.010 N 2 1 "O3'" AAA SUR 8 ? ? P AAA SUR 9 ? ? 1.515 1.607 -0.092 0.012 Y 3 1 P BBB G 7 ? ? "O5'" BBB G 7 ? ? 1.664 1.593 0.071 0.010 N 4 1 "O3'" BBB SUR 8 ? ? P BBB SUR 9 ? ? 1.514 1.607 -0.093 0.012 Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" AAA A 1 ? ? "O3'" AAA A 1 ? ? P AAA G 2 ? ? 111.65 119.70 -8.05 1.20 Y 2 1 "O3'" AAA A 1 ? ? P AAA G 2 ? ? OP2 AAA G 2 ? ? 118.16 110.50 7.66 1.10 Y 3 1 N1 AAA G 4 ? ? C6 AAA G 4 ? ? O6 AAA G 4 ? ? 123.84 119.90 3.94 0.60 N 4 1 "O3'" AAA A 6 ? ? P AAA G 7 ? ? OP2 AAA G 7 ? ? 118.46 110.50 7.96 1.10 Y 5 1 "O5'" AAA G 7 ? ? P AAA G 7 ? ? OP2 AAA G 7 ? ? 96.90 105.70 -8.80 0.90 N 6 1 "O5'" AAA C 10 ? ? P AAA C 10 ? ? OP2 AAA C 10 ? ? 99.50 105.70 -6.20 0.90 N 7 1 "O5'" BBB G 2 ? ? P BBB G 2 ? ? OP2 BBB G 2 ? ? 100.14 105.70 -5.56 0.90 N 8 1 "O3'" BBB G 2 ? ? P BBB A 3 ? ? OP2 BBB A 3 ? ? 117.41 110.50 6.91 1.10 Y 9 1 "O5'" BBB A 3 ? ? P BBB A 3 ? ? OP2 BBB A 3 ? ? 98.47 105.70 -7.23 0.90 N 10 1 "O3'" BBB A 6 ? ? P BBB G 7 ? ? OP2 BBB G 7 ? ? 117.72 110.50 7.22 1.10 Y 11 1 "O3'" BBB C 13 ? ? P BBB U 14 ? ? OP2 BBB U 14 ? ? 118.49 110.50 7.99 1.10 Y 12 1 "O5'" BBB U 14 ? ? P BBB U 14 ? ? OP2 BBB U 14 ? ? 98.94 105.70 -6.76 0.90 N 13 1 "O3'" BBB U 14 ? ? P BBB C 15 ? ? OP2 BBB C 15 ? ? 117.54 110.50 7.04 1.10 Y 14 1 "O5'" BBB C 15 ? ? P BBB C 15 ? ? OP2 BBB C 15 ? ? 97.18 105.70 -8.52 0.90 N # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 AAA HOH 106 ? C HOH . 2 1 AAA HOH 108 ? C HOH . 3 1 AAA HOH 112 ? C HOH . 4 1 AAA HOH 132 ? C HOH . 5 1 AAA HOH 136 ? C HOH . 6 1 AAA HOH 138 ? C HOH . 7 1 AAA HOH 143 ? C HOH . 8 1 AAA HOH 146 ? C HOH . 9 1 BBB HOH 109 ? D HOH . 10 1 BBB HOH 110 ? D HOH . 11 1 BBB HOH 121 ? D HOH . 12 1 BBB HOH 124 ? D HOH . 13 1 BBB HOH 129 ? D HOH . 14 1 BBB HOH 135 ? D HOH . 15 1 BBB HOH 137 ? D HOH . 16 1 BBB HOH 139 ? D HOH . # _pdbx_entry_details.entry_id 8FER _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id AAA _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 146 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 6.39 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 SUR P P N N 114 SUR OP1 O N N 115 SUR OP2 O N N 116 SUR OP3 O N N 117 SUR "O5'" O N N 118 SUR "C5'" C N N 119 SUR "C4'" C N R 120 SUR "O4'" O N N 121 SUR "C3'" C N S 122 SUR "C1'" C N R 123 SUR N1 N N N 124 SUR "C2'" C N R 125 SUR C6 C N N 126 SUR C2 C N N 127 SUR C5 C N N 128 SUR S2 S N N 129 SUR N3 N N N 130 SUR C4 C N N 131 SUR O4 O N N 132 SUR "O2'" O N N 133 SUR "O3'" O N N 134 SUR HOP1 H N N 135 SUR HOP3 H N N 136 SUR "H5'1" H N N 137 SUR "H5'2" H N N 138 SUR "H4'" H N N 139 SUR "H3'" H N N 140 SUR "H1'" H N N 141 SUR "H2'" H N N 142 SUR HC6 H N N 143 SUR HC5 H N N 144 SUR HN3 H N N 145 SUR HO2 H N N 146 SUR HO3 H N N 147 U OP3 O N N 148 U P P N N 149 U OP1 O N N 150 U OP2 O N N 151 U "O5'" O N N 152 U "C5'" C N N 153 U "C4'" C N R 154 U "O4'" O N N 155 U "C3'" C N S 156 U "O3'" O N N 157 U "C2'" C N R 158 U "O2'" O N N 159 U "C1'" C N R 160 U N1 N N N 161 U C2 C N N 162 U O2 O N N 163 U N3 N N N 164 U C4 C N N 165 U O4 O N N 166 U C5 C N N 167 U C6 C N N 168 U HOP3 H N N 169 U HOP2 H N N 170 U "H5'" H N N 171 U "H5''" H N N 172 U "H4'" H N N 173 U "H3'" H N N 174 U "HO3'" H N N 175 U "H2'" H N N 176 U "HO2'" H N N 177 U "H1'" H N N 178 U H3 H N N 179 U H5 H N N 180 U H6 H N N 181 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 SUR P OP1 sing N N 118 SUR P OP2 doub N N 119 SUR P OP3 sing N N 120 SUR P "O5'" sing N N 121 SUR OP1 HOP1 sing N N 122 SUR OP3 HOP3 sing N N 123 SUR "O5'" "C5'" sing N N 124 SUR "C5'" "C4'" sing N N 125 SUR "C5'" "H5'1" sing N N 126 SUR "C5'" "H5'2" sing N N 127 SUR "C4'" "O4'" sing N N 128 SUR "C4'" "C3'" sing N N 129 SUR "C4'" "H4'" sing N N 130 SUR "O4'" "C1'" sing N N 131 SUR "C3'" "C2'" sing N N 132 SUR "C3'" "O3'" sing N N 133 SUR "C3'" "H3'" sing N N 134 SUR "C1'" N1 sing N N 135 SUR "C1'" "C2'" sing N N 136 SUR "C1'" "H1'" sing N N 137 SUR N1 C6 sing N N 138 SUR N1 C2 sing N N 139 SUR "C2'" "O2'" sing N N 140 SUR "C2'" "H2'" sing N N 141 SUR C6 C5 doub N N 142 SUR C6 HC6 sing N N 143 SUR C2 S2 doub N N 144 SUR C2 N3 sing N N 145 SUR C5 C4 sing N N 146 SUR C5 HC5 sing N N 147 SUR N3 C4 sing N N 148 SUR N3 HN3 sing N N 149 SUR C4 O4 doub N N 150 SUR "O2'" HO2 sing N N 151 SUR "O3'" HO3 sing N N 152 U OP3 P sing N N 153 U OP3 HOP3 sing N N 154 U P OP1 doub N N 155 U P OP2 sing N N 156 U P "O5'" sing N N 157 U OP2 HOP2 sing N N 158 U "O5'" "C5'" sing N N 159 U "C5'" "C4'" sing N N 160 U "C5'" "H5'" sing N N 161 U "C5'" "H5''" sing N N 162 U "C4'" "O4'" sing N N 163 U "C4'" "C3'" sing N N 164 U "C4'" "H4'" sing N N 165 U "O4'" "C1'" sing N N 166 U "C3'" "O3'" sing N N 167 U "C3'" "C2'" sing N N 168 U "C3'" "H3'" sing N N 169 U "O3'" "HO3'" sing N N 170 U "C2'" "O2'" sing N N 171 U "C2'" "C1'" sing N N 172 U "C2'" "H2'" sing N N 173 U "O2'" "HO2'" sing N N 174 U "C1'" N1 sing N N 175 U "C1'" "H1'" sing N N 176 U N1 C2 sing N N 177 U N1 C6 sing N N 178 U C2 O2 doub N N 179 U C2 N3 sing N N 180 U N3 C4 sing N N 181 U N3 H3 sing N N 182 U C4 O4 doub N N 183 U C4 C5 sing N N 184 U C5 C6 doub N N 185 U C5 H5 sing N N 186 U C6 H6 sing N N 187 # _ndb_struct_conf_na.entry_id 8FER _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A A 1 1_555 B U 16 1_555 0.121 -0.121 -0.095 -1.445 -7.131 -5.514 1 AAA_A1:U16_BBB AAA 1 ? BBB 16 ? 20 1 1 A G 2 1_555 B C 15 1_555 -0.205 -0.183 -0.051 -0.694 -10.439 -2.592 2 AAA_G2:C15_BBB AAA 2 ? BBB 15 ? 19 1 1 A A 3 1_555 B U 14 1_555 0.123 -0.098 -0.108 -6.273 -8.449 0.739 3 AAA_A3:U14_BBB AAA 3 ? BBB 14 ? 20 1 1 A G 4 1_555 B C 13 1_555 -0.431 -0.199 -0.232 -9.385 -14.506 -1.111 4 AAA_G4:C13_BBB AAA 4 ? BBB 13 ? 19 1 1 A A 5 1_555 B U 12 1_555 0.061 -0.087 -0.111 -7.140 -8.235 1.685 5 AAA_A5:U12_BBB AAA 5 ? BBB 12 ? 20 1 1 A A 6 1_555 B U 11 1_555 0.079 -0.088 -0.044 1.458 -7.312 -2.963 6 AAA_A6:U11_BBB AAA 6 ? BBB 11 ? 20 1 1 A G 7 1_555 B C 10 1_555 -0.130 -0.229 0.078 0.366 -13.985 -1.431 7 AAA_G7:C10_BBB AAA 7 ? BBB 10 ? 19 1 1 A SUR 8 1_555 B SUR 9 1_555 -2.286 -1.659 -0.344 2.150 -13.429 -4.810 8 AAA_SUR8:SUR9_BBB AAA 8 ? BBB 9 ? ? ? 1 A SUR 9 1_555 B SUR 8 1_555 -2.215 -1.524 -0.003 -2.681 -5.096 -1.479 9 AAA_SUR9:SUR8_BBB AAA 9 ? BBB 8 ? ? ? 1 A C 10 1_555 B G 7 1_555 0.296 -0.223 -0.138 1.335 -9.297 -1.689 10 AAA_C10:G7_BBB AAA 10 ? BBB 7 ? 19 1 1 A U 11 1_555 B A 6 1_555 0.056 -0.082 -0.037 3.586 -9.302 4.244 11 AAA_U11:A6_BBB AAA 11 ? BBB 6 ? 20 1 1 A U 12 1_555 B A 5 1_555 -0.085 -0.108 -0.120 4.311 -7.732 0.255 12 AAA_U12:A5_BBB AAA 12 ? BBB 5 ? 20 1 1 A C 13 1_555 B G 4 1_555 0.453 -0.234 -0.150 8.716 -12.426 -1.657 13 AAA_C13:G4_BBB AAA 13 ? BBB 4 ? 19 1 1 A U 14 1_555 B A 3 1_555 0.051 -0.114 -0.143 6.564 -6.146 3.945 14 AAA_U14:A3_BBB AAA 14 ? BBB 3 ? 20 1 1 A C 15 1_555 B G 2 1_555 0.310 -0.177 -0.277 4.924 -8.149 -2.099 15 AAA_C15:G2_BBB AAA 15 ? BBB 2 ? 19 1 1 A U 16 1_555 B A 1 1_555 0.039 -0.088 -0.388 12.439 1.820 3.447 16 AAA_U16:A1_BBB AAA 16 ? BBB 1 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A A 1 1_555 B U 16 1_555 A G 2 1_555 B C 15 1_555 -0.328 -1.790 3.229 -2.826 8.245 29.840 -4.800 0.113 2.670 15.597 5.345 31.059 1 AAAAAA_A1G2:C15U16_BBBBBB AAA 1 ? BBB 16 ? AAA 2 ? BBB 15 ? 1 A G 2 1_555 B C 15 1_555 A A 3 1_555 B U 14 1_555 -0.098 -1.888 3.367 -0.207 10.369 34.911 -4.397 0.130 2.715 16.830 0.335 36.373 2 AAAAAA_G2A3:U14C15_BBBBBB AAA 2 ? BBB 15 ? AAA 3 ? BBB 14 ? 1 A A 3 1_555 B U 14 1_555 A G 4 1_555 B C 13 1_555 0.249 -1.868 3.342 3.086 12.428 27.777 -5.793 0.084 2.326 24.317 -6.039 30.534 3 AAAAAA_A3G4:C13U14_BBBBBB AAA 3 ? BBB 14 ? AAA 4 ? BBB 13 ? 1 A G 4 1_555 B C 13 1_555 A A 5 1_555 B U 12 1_555 0.456 -1.508 3.210 1.128 9.474 32.264 -4.035 -0.619 2.686 16.601 -1.976 33.610 4 AAAAAA_G4A5:U12C13_BBBBBB AAA 4 ? BBB 13 ? AAA 5 ? BBB 12 ? 1 A A 5 1_555 B U 12 1_555 A A 6 1_555 B U 11 1_555 -0.308 -1.367 3.036 1.607 5.688 32.579 -3.254 0.782 2.747 10.036 -2.835 33.096 5 AAAAAA_A5A6:U11U12_BBBBBB AAA 5 ? BBB 12 ? AAA 6 ? BBB 11 ? 1 A A 6 1_555 B U 11 1_555 A G 7 1_555 B C 10 1_555 0.643 -1.863 3.196 0.218 9.004 26.305 -5.799 -1.292 2.442 19.086 -0.461 27.779 6 AAAAAA_A6G7:C10U11_BBBBBB AAA 6 ? BBB 11 ? AAA 7 ? BBB 10 ? 1 A G 7 1_555 B C 10 1_555 A SUR 8 1_555 B SUR 9 1_555 -0.572 -1.851 3.001 -1.477 8.095 25.653 -5.714 0.911 2.346 17.661 3.222 26.919 7 AAAAAA_G7SUR8:SUR9C10_BBBBBB AAA 7 ? BBB 10 ? AAA 8 ? BBB 9 ? 1 A SUR 8 1_555 B SUR 9 1_555 A SUR 9 1_555 B SUR 8 1_555 0.412 -1.398 3.522 -8.249 16.178 37.011 -3.726 -1.471 2.575 23.809 12.140 41.086 8 AAAAAA_SUR8SUR9:SUR8SUR9_BBBBBB AAA 8 ? BBB 9 ? AAA 9 ? BBB 8 ? 1 A SUR 9 1_555 B SUR 8 1_555 A C 10 1_555 B G 7 1_555 0.036 -1.333 3.219 1.107 7.708 39.852 -2.736 0.064 2.922 11.178 -1.605 40.576 9 AAAAAA_SUR9C10:G7SUR8_BBBBBB AAA 9 ? BBB 8 ? AAA 10 ? BBB 7 ? 1 A C 10 1_555 B G 7 1_555 A U 11 1_555 B A 6 1_555 0.926 -1.841 3.148 3.009 7.960 28.565 -5.084 -1.234 2.633 15.697 -5.935 29.780 10 AAAAAA_C10U11:A6G7_BBBBBB AAA 10 ? BBB 7 ? AAA 11 ? BBB 6 ? 1 A U 11 1_555 B A 6 1_555 A U 12 1_555 B A 5 1_555 -0.623 -1.859 3.243 -1.994 6.725 29.952 -4.740 0.808 2.804 12.793 3.793 30.744 11 AAAAAA_U11U12:A5A6_BBBBBB AAA 11 ? BBB 6 ? AAA 12 ? BBB 5 ? 1 A U 12 1_555 B A 5 1_555 A C 13 1_555 B G 4 1_555 -0.569 -1.499 3.173 -2.649 4.751 31.851 -3.490 0.580 2.961 8.580 4.784 32.300 12 AAAAAA_U12C13:G4A5_BBBBBB AAA 12 ? BBB 5 ? AAA 13 ? BBB 4 ? 1 A C 13 1_555 B G 4 1_555 A U 14 1_555 B A 3 1_555 0.141 -1.899 3.339 -2.210 8.244 29.827 -5.053 -0.665 2.713 15.618 4.188 30.997 13 AAAAAA_C13U14:A3G4_BBBBBB AAA 13 ? BBB 4 ? AAA 14 ? BBB 3 ? 1 A U 14 1_555 B A 3 1_555 A C 15 1_555 B G 2 1_555 -0.094 -1.929 3.307 1.422 10.430 33.036 -4.725 0.361 2.590 17.789 -2.426 34.628 14 AAAAAA_U14C15:G2A3_BBBBBB AAA 14 ? BBB 3 ? AAA 15 ? BBB 2 ? 1 A C 15 1_555 B G 2 1_555 A U 16 1_555 B A 1 1_555 0.590 -2.069 3.231 0.240 2.691 24.701 -5.584 -1.301 2.998 6.266 -0.560 24.846 15 AAAAAA_C15U16:A1G2_BBBBBB AAA 15 ? BBB 2 ? AAA 16 ? BBB 1 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Simons Foundation' 'United States' 290363FY18 1 'Howard Hughes Medical Institute (HHMI)' 'United States' ? 2 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id SUR _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id SUR _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3ND4 _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 8FER _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.022826 _atom_sites.fract_transf_matrix[1][2] 0.013179 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.026357 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.003873 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.pdbx_scat_Z _atom_type.pdbx_N_electrons _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c C 6 6 2.310 20.844 1.020 10.208 1.589 0.569 0.865 51.651 0.216 H 1 1 0.493 10.511 0.323 26.126 0.140 3.142 0.041 57.800 0.003 N 7 7 12.222 0.006 3.135 9.893 2.014 28.997 1.167 0.583 -11.538 O 8 8 3.049 13.277 2.287 5.701 1.546 0.324 0.867 32.909 0.251 P 15 15 6.435 1.907 4.179 27.157 1.780 0.526 1.491 68.164 1.115 S 16 16 6.905 1.468 5.203 22.215 1.438 0.254 1.586 56.172 0.867 # loop_