data_8FHV # _entry.id 8FHV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.373 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8FHV pdb_00008fhv 10.2210/pdb8fhv/pdb WWPDB D_1000270807 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8FHV _pdbx_database_status.recvd_initial_deposition_date 2022-12-15 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Passalacqua, L.F.M.' 1 0000-0002-5490-2427 ;Ferre-D'Amare, A.R. ; 2 0000-0003-4549-1619 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Nature _citation.journal_id_ASTM NATUAS _citation.journal_id_CSD 0006 _citation.journal_id_ISSN 1476-4687 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 618 _citation.language ? _citation.page_first 1078 _citation.page_last 1084 _citation.title 'Intricate 3D architecture of a DNA mimic of GFP.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41586-023-06229-8 _citation.pdbx_database_id_PubMed 37344591 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Passalacqua, L.F.M.' 1 0000-0002-5490-2427 primary 'Banco, M.T.' 2 ? primary 'Moon, J.D.' 3 ? primary 'Li, X.' 4 0000-0003-3149-9783 primary 'Jaffrey, S.R.' 5 0000-0003-3615-6958 primary ;Ferre-D'Amare, A.R. ; 6 0000-0003-4549-1619 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 8FHV _cell.details ? _cell.formula_units_Z ? _cell.length_a 24.658 _cell.length_a_esd ? _cell.length_b 42.821 _cell.length_b_esd ? _cell.length_c 119.531 _cell.length_c_esd ? _cell.volume 126210.418 _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8FHV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Lettuce DNA aptamer' 16542.562 1 ? ? ? ? 2 non-polymer syn 'THALLIUM (I) ION' 204.383 2 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 4 ? ? ? ? 4 non-polymer syn '(5Z)-5-(3,5-difluoro-4-hydroxybenzylidene)-2-methyl-3-(2,2,2-trifluoroethyl)-3,5-dihydro-4H-imidazol-4-one' 320.215 1 ? ? ? ? 5 water nat water 18.015 29 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;(DC)(DT)(DT)(DA)(DG)(DT)(DA)(DG)(DG)(DG)(DA)(DT)(DG)(DA)(DT)(DG)(DC)(DG)(DG)(DC) (DA)(DG)(DT)(DG)(DG)(DG)(DC)(DT)(DT)(DC)(DG)(DC)(DA)(DG)(DT)(DT)(DC)(DC)(DT)(DG) (DC)(DG)(DA)(DG)(DG)(DG)(DG)(DA)(DC)(DT)(DA)(DA)(DG) ; _entity_poly.pdbx_seq_one_letter_code_can CTTAGTAGGGATGATGCGGCAGTGGGCTTCGCAGTTCCTGCGAGGGGACTAAG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DT n 1 3 DT n 1 4 DA n 1 5 DG n 1 6 DT n 1 7 DA n 1 8 DG n 1 9 DG n 1 10 DG n 1 11 DA n 1 12 DT n 1 13 DG n 1 14 DA n 1 15 DT n 1 16 DG n 1 17 DC n 1 18 DG n 1 19 DG n 1 20 DC n 1 21 DA n 1 22 DG n 1 23 DT n 1 24 DG n 1 25 DG n 1 26 DG n 1 27 DC n 1 28 DT n 1 29 DT n 1 30 DC n 1 31 DG n 1 32 DC n 1 33 DA n 1 34 DG n 1 35 DT n 1 36 DT n 1 37 DC n 1 38 DC n 1 39 DT n 1 40 DG n 1 41 DC n 1 42 DG n 1 43 DA n 1 44 DG n 1 45 DG n 1 46 DG n 1 47 DG n 1 48 DA n 1 49 DC n 1 50 DT n 1 51 DA n 1 52 DA n 1 53 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 53 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8FHV _struct_ref.pdbx_db_accession 8FHV _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8FHV _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 53 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 8FHV _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 53 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 53 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 2ZY non-polymer . '(5Z)-5-(3,5-difluoro-4-hydroxybenzylidene)-2-methyl-3-(2,2,2-trifluoroethyl)-3,5-dihydro-4H-imidazol-4-one' ? 'C13 H9 F5 N2 O2' 320.215 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 TL non-polymer . 'THALLIUM (I) ION' ? 'Tl 1' 204.383 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8FHV _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.91 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 35.51 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.05 M Magnesium chloride hexahydrate, 0.1 M HEPES pH 7.5, 30% (v/v) polyethylene glycol monoethyl ether 550' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 294 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER2 X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2022-04-07 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.976 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 24-ID-C' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.976 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 24-ID-C _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate 54.71 _reflns.entry_id 8FHV _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.27 _reflns.d_resolution_low 119.53 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 6337 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.8 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 12.1 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 12.6 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.996 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.127 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 2.27 _reflns_shell.d_res_low 2.34 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.4 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 539 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.689 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 1.223 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 61.27 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8FHV _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.50 _refine.ls_d_res_low 59.77 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 4773 _refine.ls_number_reflns_R_free 440 _refine.ls_number_reflns_R_work 4289 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.04 _refine.ls_percent_reflns_R_free 9.30 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2156 _refine.ls_R_factor_R_free 0.251 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2120 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.36 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 30.8528 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.3863 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.50 _refine_hist.d_res_low 59.77 _refine_hist.number_atoms_solvent 29 _refine_hist.number_atoms_total 1146 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1089 _refine_hist.pdbx_number_atoms_ligand 28 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0054 ? 1271 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.8252 ? 1967 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0377 ? 215 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0054 ? 56 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 34.9541 ? 542 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 2.50 2.59 . . 153 1384 99.93 . . . . 0.2655 . . . . . . . . . . . 0.3167 'X-RAY DIFFRACTION' 2.86 3.60 . . 136 1393 97.33 . . . . 0.2478 . . . . . . . . . . . 0.2501 'X-RAY DIFFRACTION' 3.61 59.77 . . 151 1512 99.82 . . . . 0.1870 . . . . . . . . . . . 0.2337 # _struct.entry_id 8FHV _struct.title 'Structure of Lettuce aptamer bound to DFHBI-1T with thallium I ions' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8FHV _struct_keywords.text 'DNA, aptamer, fluorescence, turn-on, fluorogenic, fluorophore, G-quartet, G-quadruplex' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 4 ? I N N 5 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 8 N2 ? ? ? 1_555 B TL . TL ? ? A DG 8 A TL 101 1_555 ? ? ? ? ? ? ? 3.426 ? ? metalc2 metalc ? ? A DG 9 O6 ? ? ? 1_555 B TL . TL ? ? A DG 9 A TL 101 1_555 ? ? ? ? ? ? ? 2.603 ? ? metalc3 metalc ? ? A DG 10 O6 ? ? ? 1_555 B TL . TL ? ? A DG 10 A TL 101 1_555 ? ? ? ? ? ? ? 2.844 ? ? metalc4 metalc ? ? A DG 10 O6 ? ? ? 1_555 C TL . TL ? ? A DG 10 A TL 102 1_555 ? ? ? ? ? ? ? 3.120 ? ? metalc5 metalc ? ? A DA 11 N1 ? ? ? 1_555 C TL . TL ? ? A DA 11 A TL 102 1_555 ? ? ? ? ? ? ? 2.679 ? ? metalc6 metalc ? ? A DT 15 OP2 ? ? ? 1_555 E MG . MG ? ? A DT 15 A MG 104 1_555 ? ? ? ? ? ? ? 2.218 ? ? metalc7 metalc ? ? A DG 18 O6 ? ? ? 1_555 B TL . TL ? ? A DG 18 A TL 101 1_555 ? ? ? ? ? ? ? 3.033 ? ? metalc8 metalc ? ? A DG 18 O6 ? ? ? 1_555 C TL . TL ? ? A DG 18 A TL 102 1_555 ? ? ? ? ? ? ? 2.906 ? ? metalc9 metalc ? ? A DG 19 O6 ? ? ? 1_555 B TL . TL ? ? A DG 19 A TL 101 1_555 ? ? ? ? ? ? ? 2.772 ? ? metalc10 metalc ? ? A DC 20 OP2 ? ? ? 1_555 D MG . MG ? ? A DC 20 A MG 103 1_555 ? ? ? ? ? ? ? 2.062 ? ? metalc11 metalc ? ? A DG 24 O6 ? ? ? 1_555 B TL . TL ? ? A DG 24 A TL 101 1_555 ? ? ? ? ? ? ? 2.747 ? ? metalc12 metalc ? ? A DG 25 O6 ? ? ? 1_555 B TL . TL ? ? A DG 25 A TL 101 1_555 ? ? ? ? ? ? ? 2.799 ? ? metalc13 metalc ? ? A DG 25 O6 ? ? ? 1_555 C TL . TL ? ? A DG 25 A TL 102 1_555 ? ? ? ? ? ? ? 2.916 ? ? metalc14 metalc ? ? A DG 45 O6 ? ? ? 1_555 B TL . TL ? ? A DG 45 A TL 101 1_555 ? ? ? ? ? ? ? 2.767 ? ? metalc15 metalc ? ? A DG 45 O6 ? ? ? 1_555 C TL . TL ? ? A DG 45 A TL 102 1_555 ? ? ? ? ? ? ? 2.931 ? ? metalc16 metalc ? ? A DG 46 O6 ? ? ? 1_555 B TL . TL ? ? A DG 46 A TL 101 1_555 ? ? ? ? ? ? ? 3.002 ? ? metalc17 metalc ? ? A DA 52 OP2 ? ? ? 1_555 F MG . MG ? ? A DA 52 A MG 105 1_555 ? ? ? ? ? ? ? 2.408 ? ? metalc18 metalc ? ? C TL . TL ? ? ? 1_555 H 2ZY . O9 ? ? A TL 102 A 2ZY 107 1_555 ? ? ? ? ? ? ? 2.436 ? ? metalc19 metalc ? ? C TL . TL ? ? ? 1_555 I HOH . O ? ? A TL 102 A HOH 220 1_555 ? ? ? ? ? ? ? 3.052 ? ? metalc20 metalc ? ? D MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 103 A HOH 202 1_555 ? ? ? ? ? ? ? 1.988 ? ? metalc21 metalc ? ? D MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 103 A HOH 206 1_555 ? ? ? ? ? ? ? 2.022 ? ? metalc22 metalc ? ? D MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 103 A HOH 209 1_555 ? ? ? ? ? ? ? 2.066 ? ? metalc23 metalc ? ? D MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 103 A HOH 214 1_555 ? ? ? ? ? ? ? 2.157 ? ? metalc24 metalc ? ? D MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 103 A HOH 216 1_555 ? ? ? ? ? ? ? 2.013 ? ? metalc25 metalc ? ? E MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 104 A HOH 204 1_555 ? ? ? ? ? ? ? 1.954 ? ? metalc26 metalc ? ? E MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 104 A HOH 208 1_555 ? ? ? ? ? ? ? 2.171 ? ? metalc27 metalc ? ? E MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 104 A HOH 210 1_555 ? ? ? ? ? ? ? 2.083 ? ? metalc28 metalc ? ? E MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 104 A HOH 212 1_555 ? ? ? ? ? ? ? 2.006 ? ? metalc29 metalc ? ? F MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 105 A HOH 211 1_555 ? ? ? ? ? ? ? 2.457 ? ? metalc30 metalc ? ? F MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 105 A HOH 222 1_555 ? ? ? ? ? ? ? 2.377 ? ? metalc31 metalc ? ? F MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 105 A HOH 227 1_555 ? ? ? ? ? ? ? 1.916 ? ? metalc32 metalc ? ? F MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 105 A HOH 229 1_555 ? ? ? ? ? ? ? 2.140 ? ? metalc33 metalc ? ? G MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 106 A HOH 201 1_555 ? ? ? ? ? ? ? 2.395 ? ? metalc34 metalc ? ? G MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 106 A HOH 224 1_555 ? ? ? ? ? ? ? 1.998 ? ? metalc35 metalc ? ? G MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 106 A HOH 228 1_555 ? ? ? ? ? ? ? 2.142 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 A DG 53 N1 ? ? A DC 1 A DG 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 A DG 53 O6 ? ? A DC 1 A DG 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 A DG 53 N2 ? ? A DC 1 A DG 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 2 N3 ? ? ? 1_555 A DA 52 N1 ? ? A DT 2 A DA 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DT 2 O4 ? ? ? 1_555 A DA 52 N6 ? ? A DT 2 A DA 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DT 3 N3 ? ? ? 1_555 A DA 51 N1 ? ? A DT 3 A DA 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 3 O4 ? ? ? 1_555 A DA 51 N6 ? ? A DT 3 A DA 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DA 4 N1 ? ? ? 1_555 A DT 50 N3 ? ? A DA 4 A DT 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 4 N6 ? ? ? 1_555 A DT 50 O4 ? ? A DA 4 A DT 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 5 N1 ? ? ? 1_555 A DC 49 N3 ? ? A DG 5 A DC 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 5 N2 ? ? ? 1_555 A DC 49 O2 ? ? A DG 5 A DC 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 5 O6 ? ? ? 1_555 A DC 49 N4 ? ? A DG 5 A DC 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DT 6 N3 ? ? ? 1_555 A DA 48 N1 ? ? A DT 6 A DA 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DT 6 O4 ? ? ? 1_555 A DA 48 N6 ? ? A DT 6 A DA 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 7 N1 B ? ? 1_555 A DT 23 N3 ? ? A DA 7 A DT 23 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog16 hydrog ? ? A DA 7 N6 B ? ? 1_555 A DT 23 O2 ? ? A DA 7 A DT 23 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog17 hydrog ? ? A DA 7 N1 A ? ? 1_555 A DG 47 N1 ? ? A DA 7 A DG 47 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog18 hydrog ? ? A DA 7 N6 A ? ? 1_555 A DG 47 O6 ? ? A DA 7 A DG 47 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog19 hydrog ? ? A DA 7 N6 B ? ? 1_555 A DG 47 O6 ? ? A DA 7 A DG 47 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog20 hydrog ? ? A DG 8 O6 ? ? ? 1_555 A DG 22 N2 ? ? A DG 8 A DG 22 1_555 ? ? ? ? ? ? 'DG-DG MISPAIR' ? ? ? hydrog21 hydrog ? ? A DG 8 N2 ? ? ? 1_555 A DG 24 O6 ? ? A DG 8 A DG 24 1_555 ? ? ? ? ? ? 'DG-DG MISPAIR' ? ? ? hydrog22 hydrog ? ? A DG 8 N2 ? ? ? 1_555 A DG 46 O6 ? ? A DG 8 A DG 46 1_555 ? ? ? ? ? ? 'DG-DG MISPAIR' ? ? ? hydrog23 hydrog ? ? A DG 9 N1 ? ? ? 1_555 A DG 19 O6 ? ? A DG 9 A DG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog24 hydrog ? ? A DG 9 N2 ? ? ? 1_555 A DG 19 N7 ? ? A DG 9 A DG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog25 hydrog ? ? A DG 9 N7 ? ? ? 1_555 A DG 46 N2 ? ? A DG 9 A DG 46 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog26 hydrog ? ? A DG 9 O6 ? ? ? 1_555 A DG 46 N1 ? ? A DG 9 A DG 46 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog27 hydrog ? ? A DG 10 N7 ? ? ? 1_555 A DG 18 N2 ? ? A DG 10 A DG 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog28 hydrog ? ? A DG 10 O6 ? ? ? 1_555 A DG 18 N1 ? ? A DG 10 A DG 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog29 hydrog ? ? A DG 10 N1 ? ? ? 1_555 A DG 45 O6 ? ? A DG 10 A DG 45 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog30 hydrog ? ? A DG 10 N2 ? ? ? 1_555 A DG 45 N7 ? ? A DG 10 A DG 45 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog31 hydrog ? ? A DT 12 O4 ? ? ? 1_555 A DC 17 N4 ? ? A DT 12 A DC 17 1_555 ? ? ? ? ? ? 'DT-DC MISPAIR' ? ? ? hydrog32 hydrog ? ? A DG 13 N1 ? ? ? 1_555 A DG 16 N7 ? ? A DG 13 A DG 16 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog33 hydrog ? ? A DG 13 N2 ? ? ? 1_555 A DG 16 O6 ? ? A DG 13 A DG 16 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog34 hydrog ? ? A DG 13 N2 ? ? ? 1_555 A DG 26 O6 ? ? A DG 13 A DG 26 1_555 ? ? ? ? ? ? 'DG-DG MISPAIR' ? ? ? hydrog35 hydrog ? ? A DA 14 N6 ? ? ? 1_555 A DT 29 O4 ? ? A DA 14 A DT 29 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog36 hydrog ? ? A DA 14 N7 ? ? ? 1_555 A DT 29 N3 ? ? A DA 14 A DT 29 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog37 hydrog ? ? A DT 15 N3 ? ? ? 1_555 A DT 28 O2 ? ? A DT 15 A DT 28 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog38 hydrog ? ? A DT 15 O4 ? ? ? 1_555 A DT 28 N3 ? ? A DT 15 A DT 28 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog39 hydrog ? ? A DG 16 N1 ? ? ? 1_555 A DC 27 N3 ? ? A DG 16 A DC 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A DG 16 N2 ? ? ? 1_555 A DC 27 O2 ? ? A DG 16 A DC 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A DG 16 O6 ? ? ? 1_555 A DC 27 N4 ? ? A DG 16 A DC 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A DC 17 N3 ? ? ? 1_555 A DG 26 N1 ? ? A DC 17 A DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A DC 17 N4 ? ? ? 1_555 A DG 26 O6 ? ? A DC 17 A DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A DC 17 O2 ? ? ? 1_555 A DG 26 N2 ? ? A DC 17 A DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A DG 18 N7 ? ? ? 1_555 A DG 25 N2 ? ? A DG 18 A DG 25 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog46 hydrog ? ? A DG 18 O6 ? ? ? 1_555 A DG 25 N1 ? ? A DG 18 A DG 25 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog47 hydrog ? ? A DG 19 N2 ? ? ? 1_555 A DA 21 N1 ? ? A DG 19 A DA 21 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog48 hydrog ? ? A DG 19 N3 ? ? ? 1_555 A DA 21 N6 ? ? A DG 19 A DA 21 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog49 hydrog ? ? A DG 19 N1 ? ? ? 1_555 A DG 24 O6 ? ? A DG 19 A DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog50 hydrog ? ? A DG 19 N2 ? ? ? 1_555 A DG 24 N7 ? ? A DG 19 A DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog51 hydrog ? ? A DG 24 N1 ? ? ? 1_555 A DG 46 O6 ? ? A DG 24 A DG 46 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog52 hydrog ? ? A DG 24 N2 ? ? ? 1_555 A DG 46 N7 ? ? A DG 24 A DG 46 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog53 hydrog ? ? A DG 25 N7 ? ? ? 1_555 A DG 45 N2 ? ? A DG 25 A DG 45 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog54 hydrog ? ? A DG 25 O6 ? ? ? 1_555 A DG 45 N1 ? ? A DG 25 A DG 45 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog55 hydrog ? ? A DG 26 O6 ? ? ? 1_555 A DA 43 N6 ? ? A DG 26 A DA 43 1_555 ? ? ? ? ? ? 'DG-DA MISPAIR' ? ? ? hydrog56 hydrog ? ? A DG 26 N7 ? ? ? 1_555 A DG 44 N1 ? ? A DG 26 A DG 44 1_555 ? ? ? ? ? ? 'DG-DG MISPAIR' ? ? ? hydrog57 hydrog ? ? A DC 30 N3 ? ? ? 1_555 A DG 42 N1 ? ? A DC 30 A DG 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A DC 30 N4 ? ? ? 1_555 A DG 42 O6 ? ? A DC 30 A DG 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A DC 30 O2 ? ? ? 1_555 A DG 42 N2 ? ? A DC 30 A DG 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A DG 31 N1 ? ? ? 1_555 A DC 41 N3 ? ? A DG 31 A DC 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A DG 31 N2 ? ? ? 1_555 A DC 41 O2 ? ? A DG 31 A DC 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A DG 31 O6 ? ? ? 1_555 A DC 41 N4 ? ? A DG 31 A DC 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A DC 32 N3 ? ? ? 1_555 A DG 40 N1 ? ? A DC 32 A DG 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A DC 32 N4 ? ? ? 1_555 A DG 40 O6 ? ? A DC 32 A DG 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A DC 32 O2 ? ? ? 1_555 A DG 40 N2 ? ? A DC 32 A DG 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A DA 33 N1 ? ? ? 1_555 A DT 39 N3 ? ? A DA 33 A DT 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A DA 33 N6 ? ? ? 1_555 A DT 39 O4 ? ? A DA 33 A DT 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # _atom_sites.entry_id 8FHV _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.040555 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023353 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008366 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? F ? ? 8.95735 ? ? ? 7.27484 ? ? ? 0.0 ;1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? MG ? ? 9.41153 2.53737 ? ? 2.59044 63.03566 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 9.51135 5.44231 ? ? 1.42069 35.72801 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? TL ? ? 80.47805 ? ? ? 4.14535 ? ? ? 0.0 ;1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DT 2 2 2 DT DT A . n A 1 3 DT 3 3 3 DT DT A . n A 1 4 DA 4 4 4 DA DA A . n A 1 5 DG 5 5 5 DG DG A . n A 1 6 DT 6 6 6 DT DT A . n A 1 7 DA 7 7 7 DA DA A . n A 1 8 DG 8 8 8 DG DG A . n A 1 9 DG 9 9 9 DG DG A . n A 1 10 DG 10 10 10 DG DG A . n A 1 11 DA 11 11 11 DA DA A . n A 1 12 DT 12 12 12 DT DT A . n A 1 13 DG 13 13 13 DG DG A . n A 1 14 DA 14 14 14 DA DA A . n A 1 15 DT 15 15 15 DT DT A . n A 1 16 DG 16 16 16 DG DG A . n A 1 17 DC 17 17 17 DC DC A . n A 1 18 DG 18 18 18 DG DG A . n A 1 19 DG 19 19 19 DG DG A . n A 1 20 DC 20 20 20 DC DC A . n A 1 21 DA 21 21 21 DA DA A . n A 1 22 DG 22 22 22 DG DG A . n A 1 23 DT 23 23 23 DT DT A . n A 1 24 DG 24 24 24 DG DG A . n A 1 25 DG 25 25 25 DG DG A . n A 1 26 DG 26 26 26 DG DG A . n A 1 27 DC 27 27 27 DC DC A . n A 1 28 DT 28 28 28 DT DT A . n A 1 29 DT 29 29 29 DT DT A . n A 1 30 DC 30 30 30 DC DC A . n A 1 31 DG 31 31 31 DG DG A . n A 1 32 DC 32 32 32 DC DC A . n A 1 33 DA 33 33 33 DA DA A . n A 1 34 DG 34 34 34 DG DG A . n A 1 35 DT 35 35 35 DT DT A . n A 1 36 DT 36 36 36 DT DT A . n A 1 37 DC 37 37 37 DC DC A . n A 1 38 DC 38 38 38 DC DC A . n A 1 39 DT 39 39 39 DT DT A . n A 1 40 DG 40 40 40 DG DG A . n A 1 41 DC 41 41 41 DC DC A . n A 1 42 DG 42 42 42 DG DG A . n A 1 43 DA 43 43 43 DA DA A . n A 1 44 DG 44 44 44 DG DG A . n A 1 45 DG 45 45 45 DG DG A . n A 1 46 DG 46 46 46 DG DG A . n A 1 47 DG 47 47 47 DG DG A . n A 1 48 DA 48 48 48 DA DA A . n A 1 49 DC 49 49 49 DC DC A . n A 1 50 DT 50 50 50 DT DT A . n A 1 51 DA 51 51 51 DA DA A . n A 1 52 DA 52 52 52 DA DA A . n A 1 53 DG 53 53 53 DG DG A . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email adrian.ferre@nih.gov _pdbx_contact_author.name_first 'Adrian R.' _pdbx_contact_author.name_last "Ferre-D'Amare" _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-4549-1619 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TL 1 101 1 TL TL A . C 2 TL 1 102 2 TL TL A . D 3 MG 1 103 1 MG MG A . E 3 MG 1 104 2 MG MG A . F 3 MG 1 105 3 MG MG A . G 3 MG 1 106 4 MG MG A . H 4 2ZY 1 107 1 2ZY LIG A . I 5 HOH 1 201 25 HOH HOH A . I 5 HOH 2 202 1 HOH HOH A . I 5 HOH 3 203 18 HOH HOH A . I 5 HOH 4 204 5 HOH HOH A . I 5 HOH 5 205 23 HOH HOH A . I 5 HOH 6 206 7 HOH HOH A . I 5 HOH 7 207 20 HOH HOH A . I 5 HOH 8 208 14 HOH HOH A . I 5 HOH 9 209 8 HOH HOH A . I 5 HOH 10 210 6 HOH HOH A . I 5 HOH 11 211 4 HOH HOH A . I 5 HOH 12 212 10 HOH HOH A . I 5 HOH 13 213 11 HOH HOH A . I 5 HOH 14 214 2 HOH HOH A . I 5 HOH 15 215 19 HOH HOH A . I 5 HOH 16 216 13 HOH HOH A . I 5 HOH 17 217 21 HOH HOH A . I 5 HOH 18 218 17 HOH HOH A . I 5 HOH 19 219 24 HOH HOH A . I 5 HOH 20 220 28 HOH HOH A . I 5 HOH 21 221 12 HOH HOH A . I 5 HOH 22 222 9 HOH HOH A . I 5 HOH 23 223 22 HOH HOH A . I 5 HOH 24 224 26 HOH HOH A . I 5 HOH 25 225 16 HOH HOH A . I 5 HOH 26 226 15 HOH HOH A . I 5 HOH 27 227 29 HOH HOH A . I 5 HOH 28 228 27 HOH HOH A . I 5 HOH 29 229 3 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N2 ? A DG 8 ? A DG 8 ? 1_555 TL ? B TL . ? A TL 101 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 53.0 ? 2 N2 ? A DG 8 ? A DG 8 ? 1_555 TL ? B TL . ? A TL 101 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 124.0 ? 3 O6 ? A DG 9 ? A DG 9 ? 1_555 TL ? B TL . ? A TL 101 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 73.5 ? 4 N2 ? A DG 8 ? A DG 8 ? 1_555 TL ? B TL . ? A TL 101 ? 1_555 O6 ? A DG 18 ? A DG 18 ? 1_555 130.7 ? 5 O6 ? A DG 9 ? A DG 9 ? 1_555 TL ? B TL . ? A TL 101 ? 1_555 O6 ? A DG 18 ? A DG 18 ? 1_555 122.4 ? 6 O6 ? A DG 10 ? A DG 10 ? 1_555 TL ? B TL . ? A TL 101 ? 1_555 O6 ? A DG 18 ? A DG 18 ? 1_555 64.1 ? 7 N2 ? A DG 8 ? A DG 8 ? 1_555 TL ? B TL . ? A TL 101 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 68.9 ? 8 O6 ? A DG 9 ? A DG 9 ? 1_555 TL ? B TL . ? A TL 101 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 75.5 ? 9 O6 ? A DG 10 ? A DG 10 ? 1_555 TL ? B TL . ? A TL 101 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 84.3 ? 10 O6 ? A DG 18 ? A DG 18 ? 1_555 TL ? B TL . ? A TL 101 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 63.6 ? 11 N2 ? A DG 8 ? A DG 8 ? 1_555 TL ? B TL . ? A TL 101 ? 1_555 O6 ? A DG 24 ? A DG 24 ? 1_555 61.1 ? 12 O6 ? A DG 9 ? A DG 9 ? 1_555 TL ? B TL . ? A TL 101 ? 1_555 O6 ? A DG 24 ? A DG 24 ? 1_555 113.9 ? 13 O6 ? A DG 10 ? A DG 10 ? 1_555 TL ? B TL . ? A TL 101 ? 1_555 O6 ? A DG 24 ? A DG 24 ? 1_555 157.9 ? 14 O6 ? A DG 18 ? A DG 18 ? 1_555 TL ? B TL . ? A TL 101 ? 1_555 O6 ? A DG 24 ? A DG 24 ? 1_555 95.9 ? 15 O6 ? A DG 19 ? A DG 19 ? 1_555 TL ? B TL . ? A TL 101 ? 1_555 O6 ? A DG 24 ? A DG 24 ? 1_555 78.0 ? 16 N2 ? A DG 8 ? A DG 8 ? 1_555 TL ? B TL . ? A TL 101 ? 1_555 O6 ? A DG 25 ? A DG 25 ? 1_555 129.6 ? 17 O6 ? A DG 9 ? A DG 9 ? 1_555 TL ? B TL . ? A TL 101 ? 1_555 O6 ? A DG 25 ? A DG 25 ? 1_555 168.4 ? 18 O6 ? A DG 10 ? A DG 10 ? 1_555 TL ? B TL . ? A TL 101 ? 1_555 O6 ? A DG 25 ? A DG 25 ? 1_555 106.2 ? 19 O6 ? A DG 18 ? A DG 18 ? 1_555 TL ? B TL . ? A TL 101 ? 1_555 O6 ? A DG 25 ? A DG 25 ? 1_555 65.9 ? 20 O6 ? A DG 19 ? A DG 19 ? 1_555 TL ? B TL . ? A TL 101 ? 1_555 O6 ? A DG 25 ? A DG 25 ? 1_555 116.1 ? 21 O6 ? A DG 24 ? A DG 24 ? 1_555 TL ? B TL . ? A TL 101 ? 1_555 O6 ? A DG 25 ? A DG 25 ? 1_555 70.9 ? 22 N2 ? A DG 8 ? A DG 8 ? 1_555 TL ? B TL . ? A TL 101 ? 1_555 O6 ? A DG 45 ? A DG 45 ? 1_555 127.5 ? 23 O6 ? A DG 9 ? A DG 9 ? 1_555 TL ? B TL . ? A TL 101 ? 1_555 O6 ? A DG 45 ? A DG 45 ? 1_555 95.7 ? 24 O6 ? A DG 10 ? A DG 10 ? 1_555 TL ? B TL . ? A TL 101 ? 1_555 O6 ? A DG 45 ? A DG 45 ? 1_555 66.8 ? 25 O6 ? A DG 18 ? A DG 18 ? 1_555 TL ? B TL . ? A TL 101 ? 1_555 O6 ? A DG 45 ? A DG 45 ? 1_555 101.1 ? 26 O6 ? A DG 19 ? A DG 19 ? 1_555 TL ? B TL . ? A TL 101 ? 1_555 O6 ? A DG 45 ? A DG 45 ? 1_555 151.1 ? 27 O6 ? A DG 24 ? A DG 24 ? 1_555 TL ? B TL . ? A TL 101 ? 1_555 O6 ? A DG 45 ? A DG 45 ? 1_555 129.8 ? 28 O6 ? A DG 25 ? A DG 25 ? 1_555 TL ? B TL . ? A TL 101 ? 1_555 O6 ? A DG 45 ? A DG 45 ? 1_555 73.9 ? 29 N2 ? A DG 8 ? A DG 8 ? 1_555 TL ? B TL . ? A TL 101 ? 1_555 O6 ? A DG 46 ? A DG 46 ? 1_555 54.1 ? 30 O6 ? A DG 9 ? A DG 9 ? 1_555 TL ? B TL . ? A TL 101 ? 1_555 O6 ? A DG 46 ? A DG 46 ? 1_555 73.0 ? 31 O6 ? A DG 10 ? A DG 10 ? 1_555 TL ? B TL . ? A TL 101 ? 1_555 O6 ? A DG 46 ? A DG 46 ? 1_555 128.3 ? 32 O6 ? A DG 18 ? A DG 18 ? 1_555 TL ? B TL . ? A TL 101 ? 1_555 O6 ? A DG 46 ? A DG 46 ? 1_555 164.3 ? 33 O6 ? A DG 19 ? A DG 19 ? 1_555 TL ? B TL . ? A TL 101 ? 1_555 O6 ? A DG 46 ? A DG 46 ? 1_555 122.9 ? 34 O6 ? A DG 24 ? A DG 24 ? 1_555 TL ? B TL . ? A TL 101 ? 1_555 O6 ? A DG 46 ? A DG 46 ? 1_555 73.2 ? 35 O6 ? A DG 25 ? A DG 25 ? 1_555 TL ? B TL . ? A TL 101 ? 1_555 O6 ? A DG 46 ? A DG 46 ? 1_555 99.3 ? 36 O6 ? A DG 45 ? A DG 45 ? 1_555 TL ? B TL . ? A TL 101 ? 1_555 O6 ? A DG 46 ? A DG 46 ? 1_555 78.6 ? 37 O6 ? A DG 10 ? A DG 10 ? 1_555 TL ? C TL . ? A TL 102 ? 1_555 N1 ? A DA 11 ? A DA 11 ? 1_555 75.5 ? 38 O6 ? A DG 10 ? A DG 10 ? 1_555 TL ? C TL . ? A TL 102 ? 1_555 O6 ? A DG 18 ? A DG 18 ? 1_555 62.3 ? 39 N1 ? A DA 11 ? A DA 11 ? 1_555 TL ? C TL . ? A TL 102 ? 1_555 O6 ? A DG 18 ? A DG 18 ? 1_555 128.0 ? 40 O6 ? A DG 10 ? A DG 10 ? 1_555 TL ? C TL . ? A TL 102 ? 1_555 O6 ? A DG 25 ? A DG 25 ? 1_555 96.6 ? 41 N1 ? A DA 11 ? A DA 11 ? 1_555 TL ? C TL . ? A TL 102 ? 1_555 O6 ? A DG 25 ? A DG 25 ? 1_555 152.1 ? 42 O6 ? A DG 18 ? A DG 18 ? 1_555 TL ? C TL . ? A TL 102 ? 1_555 O6 ? A DG 25 ? A DG 25 ? 1_555 66.2 ? 43 O6 ? A DG 10 ? A DG 10 ? 1_555 TL ? C TL . ? A TL 102 ? 1_555 O6 ? A DG 45 ? A DG 45 ? 1_555 61.3 ? 44 N1 ? A DA 11 ? A DA 11 ? 1_555 TL ? C TL . ? A TL 102 ? 1_555 O6 ? A DG 45 ? A DG 45 ? 1_555 83.2 ? 45 O6 ? A DG 18 ? A DG 18 ? 1_555 TL ? C TL . ? A TL 102 ? 1_555 O6 ? A DG 45 ? A DG 45 ? 1_555 100.4 ? 46 O6 ? A DG 25 ? A DG 25 ? 1_555 TL ? C TL . ? A TL 102 ? 1_555 O6 ? A DG 45 ? A DG 45 ? 1_555 69.8 ? 47 O6 ? A DG 10 ? A DG 10 ? 1_555 TL ? C TL . ? A TL 102 ? 1_555 O9 ? H 2ZY . ? A 2ZY 107 ? 1_555 100.8 ? 48 N1 ? A DA 11 ? A DA 11 ? 1_555 TL ? C TL . ? A TL 102 ? 1_555 O9 ? H 2ZY . ? A 2ZY 107 ? 1_555 79.5 ? 49 O6 ? A DG 18 ? A DG 18 ? 1_555 TL ? C TL . ? A TL 102 ? 1_555 O9 ? H 2ZY . ? A 2ZY 107 ? 1_555 80.0 ? 50 O6 ? A DG 25 ? A DG 25 ? 1_555 TL ? C TL . ? A TL 102 ? 1_555 O9 ? H 2ZY . ? A 2ZY 107 ? 1_555 128.4 ? 51 O6 ? A DG 45 ? A DG 45 ? 1_555 TL ? C TL . ? A TL 102 ? 1_555 O9 ? H 2ZY . ? A 2ZY 107 ? 1_555 157.9 ? 52 O6 ? A DG 10 ? A DG 10 ? 1_555 TL ? C TL . ? A TL 102 ? 1_555 O ? I HOH . ? A HOH 220 ? 1_555 146.3 ? 53 N1 ? A DA 11 ? A DA 11 ? 1_555 TL ? C TL . ? A TL 102 ? 1_555 O ? I HOH . ? A HOH 220 ? 1_555 90.6 ? 54 O6 ? A DG 18 ? A DG 18 ? 1_555 TL ? C TL . ? A TL 102 ? 1_555 O ? I HOH . ? A HOH 220 ? 1_555 141.2 ? 55 O6 ? A DG 25 ? A DG 25 ? 1_555 TL ? C TL . ? A TL 102 ? 1_555 O ? I HOH . ? A HOH 220 ? 1_555 81.3 ? 56 O6 ? A DG 45 ? A DG 45 ? 1_555 TL ? C TL . ? A TL 102 ? 1_555 O ? I HOH . ? A HOH 220 ? 1_555 86.9 ? 57 O9 ? H 2ZY . ? A 2ZY 107 ? 1_555 TL ? C TL . ? A TL 102 ? 1_555 O ? I HOH . ? A HOH 220 ? 1_555 106.7 ? 58 OP2 ? A DT 15 ? A DT 15 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? I HOH . ? A HOH 204 ? 1_555 67.2 ? 59 OP2 ? A DT 15 ? A DT 15 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? I HOH . ? A HOH 208 ? 1_555 72.4 ? 60 O ? I HOH . ? A HOH 204 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? I HOH . ? A HOH 208 ? 1_555 82.0 ? 61 OP2 ? A DT 15 ? A DT 15 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? I HOH . ? A HOH 210 ? 1_555 80.2 ? 62 O ? I HOH . ? A HOH 204 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? I HOH . ? A HOH 210 ? 1_555 144.0 ? 63 O ? I HOH . ? A HOH 208 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? I HOH . ? A HOH 210 ? 1_555 73.5 ? 64 OP2 ? A DT 15 ? A DT 15 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? I HOH . ? A HOH 212 ? 1_555 159.3 ? 65 O ? I HOH . ? A HOH 204 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? I HOH . ? A HOH 212 ? 1_555 123.9 ? 66 O ? I HOH . ? A HOH 208 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? I HOH . ? A HOH 212 ? 1_555 91.0 ? 67 O ? I HOH . ? A HOH 210 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? I HOH . ? A HOH 212 ? 1_555 83.2 ? 68 OP2 ? A DC 20 ? A DC 20 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? I HOH . ? A HOH 202 ? 1_555 68.8 ? 69 OP2 ? A DC 20 ? A DC 20 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? I HOH . ? A HOH 206 ? 1_555 76.2 ? 70 O ? I HOH . ? A HOH 202 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? I HOH . ? A HOH 206 ? 1_555 75.0 ? 71 OP2 ? A DC 20 ? A DC 20 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? I HOH . ? A HOH 209 ? 1_555 112.0 ? 72 O ? I HOH . ? A HOH 202 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? I HOH . ? A HOH 209 ? 1_555 76.4 ? 73 O ? I HOH . ? A HOH 206 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? I HOH . ? A HOH 209 ? 1_555 144.5 ? 74 OP2 ? A DC 20 ? A DC 20 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? I HOH . ? A HOH 214 ? 1_555 145.4 ? 75 O ? I HOH . ? A HOH 202 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? I HOH . ? A HOH 214 ? 1_555 80.6 ? 76 O ? I HOH . ? A HOH 206 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? I HOH . ? A HOH 214 ? 1_555 80.6 ? 77 O ? I HOH . ? A HOH 209 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? I HOH . ? A HOH 214 ? 1_555 74.3 ? 78 OP2 ? A DC 20 ? A DC 20 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? I HOH . ? A HOH 216 ? 1_555 105.7 ? 79 O ? I HOH . ? A HOH 202 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? I HOH . ? A HOH 216 ? 1_555 170.9 ? 80 O ? I HOH . ? A HOH 206 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? I HOH . ? A HOH 216 ? 1_555 96.9 ? 81 O ? I HOH . ? A HOH 209 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? I HOH . ? A HOH 216 ? 1_555 112.6 ? 82 O ? I HOH . ? A HOH 214 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? I HOH . ? A HOH 216 ? 1_555 102.3 ? 83 OP2 ? A DA 52 ? A DA 52 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? I HOH . ? A HOH 211 ? 1_555 65.5 ? 84 OP2 ? A DA 52 ? A DA 52 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? I HOH . ? A HOH 222 ? 1_555 86.6 ? 85 O ? I HOH . ? A HOH 211 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? I HOH . ? A HOH 222 ? 1_555 58.6 ? 86 OP2 ? A DA 52 ? A DA 52 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? I HOH . ? A HOH 227 ? 1_555 143.8 ? 87 O ? I HOH . ? A HOH 211 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? I HOH . ? A HOH 227 ? 1_555 138.6 ? 88 O ? I HOH . ? A HOH 222 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? I HOH . ? A HOH 227 ? 1_555 89.1 ? 89 OP2 ? A DA 52 ? A DA 52 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? I HOH . ? A HOH 229 ? 1_555 136.3 ? 90 O ? I HOH . ? A HOH 211 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? I HOH . ? A HOH 229 ? 1_555 72.3 ? 91 O ? I HOH . ? A HOH 222 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? I HOH . ? A HOH 229 ? 1_555 61.4 ? 92 O ? I HOH . ? A HOH 227 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? I HOH . ? A HOH 229 ? 1_555 69.4 ? 93 O ? I HOH . ? A HOH 201 ? 1_555 MG ? G MG . ? A MG 106 ? 1_555 O ? I HOH . ? A HOH 224 ? 1_555 84.2 ? 94 O ? I HOH . ? A HOH 201 ? 1_555 MG ? G MG . ? A MG 106 ? 1_555 O ? I HOH . ? A HOH 228 ? 1_555 95.6 ? 95 O ? I HOH . ? A HOH 224 ? 1_555 MG ? G MG . ? A MG 106 ? 1_555 O ? I HOH . ? A HOH 228 ? 1_555 115.1 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2023-05-10 2 'Structure model' 1 1 2023-07-05 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.journal_volume' 7 2 'Structure model' '_citation.page_first' 8 2 'Structure model' '_citation.page_last' 9 2 'Structure model' '_citation.pdbx_database_id_DOI' 10 2 'Structure model' '_citation.pdbx_database_id_PubMed' 11 2 'Structure model' '_citation.title' 12 2 'Structure model' '_citation.year' # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 x+1/2,-y+1/2,-z 3 -x,y+1/2,-z+1/2 4 -x+1/2,-y,z+1/2 # _pdbx_refine_tls.id 1 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -6.2079795219 _pdbx_refine_tls.origin_y -39.3988242331 _pdbx_refine_tls.origin_z -102.255646383 _pdbx_refine_tls.T[1][1] 0.215046761079 _pdbx_refine_tls.T[1][1]_esd ? _pdbx_refine_tls.T[1][2] 0.035476826955 _pdbx_refine_tls.T[1][2]_esd ? _pdbx_refine_tls.T[1][3] -0.0284539484027 _pdbx_refine_tls.T[1][3]_esd ? _pdbx_refine_tls.T[2][2] 0.549802430581 _pdbx_refine_tls.T[2][2]_esd ? _pdbx_refine_tls.T[2][3] 0.00117552082595 _pdbx_refine_tls.T[2][3]_esd ? _pdbx_refine_tls.T[3][3] 0.559994777885 _pdbx_refine_tls.T[3][3]_esd ? _pdbx_refine_tls.L[1][1] 2.09307341182 _pdbx_refine_tls.L[1][1]_esd ? _pdbx_refine_tls.L[1][2] 1.2323108342 _pdbx_refine_tls.L[1][2]_esd ? _pdbx_refine_tls.L[1][3] 0.269184105552 _pdbx_refine_tls.L[1][3]_esd ? _pdbx_refine_tls.L[2][2] 3.2493128121 _pdbx_refine_tls.L[2][2]_esd ? _pdbx_refine_tls.L[2][3] 3.31729017043 _pdbx_refine_tls.L[2][3]_esd ? _pdbx_refine_tls.L[3][3] 7.97022787499 _pdbx_refine_tls.L[3][3]_esd ? _pdbx_refine_tls.S[1][1] -0.103180709064 _pdbx_refine_tls.S[1][1]_esd ? _pdbx_refine_tls.S[1][2] 0.26217562314 _pdbx_refine_tls.S[1][2]_esd ? _pdbx_refine_tls.S[1][3] -0.133795656153 _pdbx_refine_tls.S[1][3]_esd ? _pdbx_refine_tls.S[2][1] -0.183924156473 _pdbx_refine_tls.S[2][1]_esd ? _pdbx_refine_tls.S[2][2] 0.292628697282 _pdbx_refine_tls.S[2][2]_esd ? _pdbx_refine_tls.S[2][3] 0.0660073671733 _pdbx_refine_tls.S[2][3]_esd ? _pdbx_refine_tls.S[3][1] 0.0752107316727 _pdbx_refine_tls.S[3][1]_esd ? _pdbx_refine_tls.S[3][2] 0.291688700171 _pdbx_refine_tls.S[3][2]_esd ? _pdbx_refine_tls.S[3][3] -0.121476594561 _pdbx_refine_tls.S[3][3]_esd ? # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.beg_auth_asym_id T _pdbx_refine_tls_group.beg_auth_seq_id 1 _pdbx_refine_tls_group.beg_PDB_ins_code ? _pdbx_refine_tls_group.end_label_asym_id I _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id H _pdbx_refine_tls_group.end_auth_seq_id 29 _pdbx_refine_tls_group.end_PDB_ins_code ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details all # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'model building' ? ? ? ? ? ? ? ? ? ? ? Coot ? ? ? 0.9.5 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.19.2_4158 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? AutoSol ? ? ? . 5 # _pdbx_entry_details.entry_id 8FHV _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 17 ? ? "C1'" A DC 17 ? ? N1 A DC 17 ? ? 112.20 108.30 3.90 0.30 N 2 1 "O4'" A DG 25 ? ? "C1'" A DG 25 ? ? N9 A DG 25 ? ? 110.22 108.30 1.92 0.30 N # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A DC 37 ? O2 ? A DC 37 O2 2 1 Y 1 A DC 37 ? N3 ? A DC 37 N3 3 1 Y 1 A DC 37 ? C4 ? A DC 37 C4 4 1 Y 1 A DC 37 ? N4 ? A DC 37 N4 5 1 Y 1 A DC 37 ? C5 ? A DC 37 C5 6 1 Y 1 A DC 38 ? O2 ? A DC 38 O2 7 1 Y 1 A DC 38 ? N3 ? A DC 38 N3 8 1 Y 1 A DC 38 ? C4 ? A DC 38 C4 9 1 Y 1 A DC 38 ? N4 ? A DC 38 N4 10 1 Y 1 A DC 38 ? C5 ? A DC 38 C5 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 8FHV 'double helix' 8FHV 'b-form double helix' 8FHV 'hairpin loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 A DG 53 1_555 0.189 -0.170 0.369 2.305 -7.048 0.543 1 A_DC1:DG53_A A 1 ? A 53 ? 19 1 1 A DT 2 1_555 A DA 52 1_555 -0.037 -0.165 0.042 -1.945 -7.471 2.933 2 A_DT2:DA52_A A 2 ? A 52 ? 20 1 1 A DT 3 1_555 A DA 51 1_555 -0.141 -0.115 0.145 -0.075 -6.612 3.307 3 A_DT3:DA51_A A 3 ? A 51 ? 20 1 1 A DA 4 1_555 A DT 50 1_555 -0.017 -0.152 0.187 3.087 -8.495 4.155 4 A_DA4:DT50_A A 4 ? A 50 ? 20 1 1 A DG 5 1_555 A DC 49 1_555 -0.203 -0.079 0.116 -1.144 -14.256 3.507 5 A_DG5:DC49_A A 5 ? A 49 ? 19 1 1 A DT 6 1_555 A DA 48 1_555 -0.051 -0.112 0.057 -9.310 -18.224 -0.656 6 A_DT6:DA48_A A 6 ? A 48 ? 20 1 1 A DA 7 1_555 A DG 47 1_555 1.157 1.216 -0.006 -23.815 -10.661 -4.453 7 A_DA7:DG47_A A 7 ? A 47 ? 8 1 1 A DG 8 1_555 A DG 22 1_555 -4.242 0.864 -0.237 0.411 -26.345 -63.124 8 A_DG8:DG22_A A 8 ? A 22 ? ? 2 1 A DG 19 1_555 A DG 24 1_555 1.896 3.040 -1.095 27.531 10.616 -87.102 9 A_DG19:DG24_A A 19 ? A 24 ? 6 3 1 A DG 10 1_555 A DG 45 1_555 1.588 3.091 -0.578 17.112 -4.209 -89.733 10 A_DG10:DG45_A A 10 ? A 45 ? 6 3 1 A DG 18 1_555 A DG 25 1_555 -1.499 -3.299 1.063 -25.468 0.630 91.300 11 A_DG18:DG25_A A 18 ? A 25 ? 6 3 1 A DG 9 1_555 A DG 46 1_555 -1.763 -3.418 0.026 -3.111 0.225 86.377 12 A_DG9:DG46_A A 9 ? A 46 ? 6 3 1 A DG 26 1_555 A DC 17 1_555 -0.251 -0.117 0.036 -16.316 4.819 2.695 13 A_DG26:DC17_A A 26 ? A 17 ? 19 1 1 A DC 27 1_555 A DG 16 1_555 0.164 -0.194 -0.077 -1.600 5.213 0.557 14 A_DC27:DG16_A A 27 ? A 16 ? 19 1 1 A DT 28 1_555 A DT 15 1_555 2.235 -2.132 0.185 4.980 -5.713 4.761 15 A_DT28:DT15_A A 28 ? A 15 ? 16 1 1 A DT 29 1_555 A DA 14 1_555 -0.799 3.683 0.503 -10.151 -6.442 -67.576 16 A_DT29:DA14_A A 29 ? A 14 ? 23 3 1 A DC 30 1_555 A DG 42 1_555 0.176 -0.106 0.202 -6.706 -7.641 0.962 17 A_DC30:DG42_A A 30 ? A 42 ? 19 1 1 A DG 31 1_555 A DC 41 1_555 -0.167 -0.164 -0.125 -3.401 -7.670 -0.408 18 A_DG31:DC41_A A 31 ? A 41 ? 19 1 1 A DC 32 1_555 A DG 40 1_555 0.222 -0.169 -0.019 -2.345 -4.019 0.495 19 A_DC32:DG40_A A 32 ? A 40 ? 19 1 1 A DA 33 1_555 A DT 39 1_555 0.230 -0.002 -0.081 -0.661 -9.200 -2.255 20 A_DA33:DT39_A A 33 ? A 39 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 A DG 53 1_555 A DT 2 1_555 A DA 52 1_555 -0.032 -1.172 3.379 3.448 -0.933 30.469 -2.025 0.764 3.388 -1.768 -6.533 30.672 1 AA_DC1DT2:DA52DG53_AA A 1 ? A 53 ? A 2 ? A 52 ? 1 A DT 2 1_555 A DA 52 1_555 A DT 3 1_555 A DA 51 1_555 -0.401 -0.502 3.250 -0.334 2.188 30.602 -1.374 0.693 3.211 4.139 0.631 30.680 2 AA_DT2DT3:DA51DA52_AA A 2 ? A 52 ? A 3 ? A 51 ? 1 A DT 3 1_555 A DA 51 1_555 A DA 4 1_555 A DT 50 1_555 0.151 0.647 3.210 -1.755 5.678 39.586 0.299 -0.421 3.259 8.326 2.573 40.012 3 AA_DT3DA4:DT50DA51_AA A 3 ? A 51 ? A 4 ? A 50 ? 1 A DA 4 1_555 A DT 50 1_555 A DG 5 1_555 A DC 49 1_555 -0.034 -0.158 3.436 -1.698 2.256 33.724 -0.653 -0.228 3.416 3.880 2.921 33.839 4 AA_DA4DG5:DC49DT50_AA A 4 ? A 50 ? A 5 ? A 49 ? 1 A DG 5 1_555 A DC 49 1_555 A DT 6 1_555 A DA 48 1_555 -0.510 -0.922 3.349 1.801 0.253 36.135 -1.521 1.080 3.314 0.407 -2.901 36.180 5 AA_DG5DT6:DA48DC49_AA A 5 ? A 49 ? A 6 ? A 48 ? 1 A DT 6 1_555 A DA 48 1_555 A DA 7 1_555 A DG 47 1_555 0.032 -0.266 3.674 2.669 -0.674 43.526 -0.286 0.245 3.673 -0.908 -3.595 43.608 6 AA_DT6DA7:DG47DA48_AA A 6 ? A 48 ? A 7 ? A 47 ? 1 A DA 7 1_555 A DG 47 1_555 A DG 8 1_555 A DG 22 1_555 4.407 0.651 3.048 -14.614 12.131 76.336 0.231 -3.832 2.372 9.675 11.654 78.313 7 AA_DA7DG8:DG22DG47_AA A 7 ? A 47 ? A 8 ? A 22 ? 1 A DG 8 1_555 A DG 22 1_555 A DG 19 1_555 A DG 24 1_555 -1.993 2.029 -4.239 103.005 105.910 84.002 2.162 -0.076 -2.852 56.667 -55.112 156.170 8 AA_DG8DG19:DG24DG22_AA A 8 ? A 22 ? A 19 ? A 24 ? 1 A DG 10 1_555 A DG 45 1_555 A DG 18 1_555 A DG 25 1_555 1.707 3.269 0.083 -11.184 -9.291 -179.991 -1.634 0.854 0.083 4.646 -5.592 -179.991 9 AA_DG10DG18:DG25DG45_AA A 10 ? A 45 ? A 18 ? A 25 ? 1 A DG 18 1_555 A DG 25 1_555 A DG 9 1_555 A DG 46 1_555 4.286 -1.405 0.751 144.231 81.074 -150.846 0.680 2.184 -0.034 -40.651 72.317 -176.349 10 AA_DG18DG9:DG46DG25_AA A 18 ? A 25 ? A 9 ? A 46 ? 1 A DG 26 1_555 A DC 17 1_555 A DC 27 1_555 A DG 16 1_555 -0.758 -0.407 2.966 2.040 8.299 26.053 -2.666 2.046 2.647 17.810 -4.377 27.396 11 AA_DG26DC27:DG16DC17_AA A 26 ? A 17 ? A 27 ? A 16 ? 1 A DC 27 1_555 A DG 16 1_555 A DT 28 1_555 A DT 15 1_555 0.604 0.552 3.315 -1.149 10.838 40.172 -0.412 -0.978 3.331 15.437 1.636 41.566 12 AA_DC27DT28:DT15DG16_AA A 27 ? A 16 ? A 28 ? A 15 ? 1 A DT 28 1_555 A DT 15 1_555 A DT 29 1_555 A DA 14 1_555 0.753 -3.741 3.152 4.302 0.793 69.419 -3.307 -0.511 3.151 0.696 -3.774 69.539 13 AA_DT28DT29:DA14DT15_AA A 28 ? A 15 ? A 29 ? A 14 ? 1 A DT 29 1_555 A DA 14 1_555 A DC 30 1_555 A DG 42 1_555 0.008 2.036 3.468 1.074 2.640 6.094 4.365 5.214 3.941 23.232 -9.450 6.727 14 AA_DT29DC30:DG42DA14_AA A 29 ? A 14 ? A 30 ? A 42 ? 1 A DC 30 1_555 A DG 42 1_555 A DG 31 1_555 A DC 41 1_555 -0.513 0.857 3.229 -2.158 3.988 38.426 0.802 0.508 3.321 6.033 3.265 38.683 15 AA_DC30DG31:DC41DG42_AA A 30 ? A 42 ? A 31 ? A 41 ? 1 A DG 31 1_555 A DC 41 1_555 A DC 32 1_555 A DG 40 1_555 0.466 0.519 3.202 0.393 1.556 35.566 0.627 -0.706 3.226 2.545 -0.643 35.601 16 AA_DG31DC32:DG40DC41_AA A 31 ? A 41 ? A 32 ? A 40 ? 1 A DC 32 1_555 A DG 40 1_555 A DA 33 1_555 A DT 39 1_555 -0.341 0.729 3.301 -1.094 2.767 39.488 0.747 0.373 3.350 4.088 1.616 39.595 17 AA_DC32DA33:DT39DG40_AA A 32 ? A 40 ? A 33 ? A 39 ? # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id 2ZY _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id 2ZY _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'THALLIUM (I) ION' TL 3 'MAGNESIUM ION' MG 4 '(5Z)-5-(3,5-difluoro-4-hydroxybenzylidene)-2-methyl-3-(2,2,2-trifluoroethyl)-3,5-dihydro-4H-imidazol-4-one' 2ZY 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'in silico model' _pdbx_initial_refinement_model.source_name ? _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? # _space_group.name_H-M_alt 'P 21 21 21' _space_group.name_Hall 'P 2ac 2ab' _space_group.IT_number 19 _space_group.crystal_system orthorhombic _space_group.id 1 #