HEADER DNA BINDING PROTEIN 16-DEC-22 8FIL TITLE ZINC-FREE APOBEC3A (INACTIVE E72A MUTANT) IN COMPLEX WITH TTC-HAIRPIN TITLE 2 DNA SUBSTRATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA DC->DU-EDITING ENZYME APOBEC-3A; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: A3A,PHORBOLIN-1; COMPND 5 EC: 3.5.4.38; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (5'-D(*TP*GP*CP*GP*CP*TP*TP*CP*GP*CP*GP*CP*T)-3'); COMPND 10 CHAIN: D, E; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: APOBEC3A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PETITE; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606 KEYWDS APOBEC, APOBEC3A, A3A, APOBEC3A E72A MUTANT, CANCER, DNA, MUTATION, KEYWDS 2 CYTIDINE DEAMINASE, HAIRPIN DNA, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.HARJES,G.B.JAMESON,E.HARJES,V.V.FILICHEV,H.M.KURUP REVDAT 2 18-SEP-24 8FIL 1 JRNL REVDAT 1 06-SEP-23 8FIL 0 JRNL AUTH S.HARJES,H.M.KURUP,A.E.RIEFFER,M.BAYARJARGAL,J.FILITCHEVA, JRNL AUTH 2 Y.SU,T.K.HALE,V.V.FILICHEV,E.HARJES,R.S.HARRIS,G.B.JAMESON JRNL TITL STRUCTURE-GUIDED INHIBITION OF THE CANCER DNA-MUTATING JRNL TITL 2 ENZYME APOBEC3A. JRNL REF NAT COMMUN V. 14 6382 2023 JRNL REFN ESSN 2041-1723 JRNL PMID 37821454 JRNL DOI 10.1038/S41467-023-42174-W REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 34669 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.233 REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1827 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.01 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.07 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2317 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.08 REMARK 3 BIN R VALUE (WORKING SET) : 0.3600 REMARK 3 BIN FREE R VALUE SET COUNT : 114 REMARK 3 BIN FREE R VALUE : 0.3650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2992 REMARK 3 NUCLEIC ACID ATOMS : 520 REMARK 3 HETEROGEN ATOMS : 74 REMARK 3 SOLVENT ATOMS : 81 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.50000 REMARK 3 B22 (A**2) : -2.78000 REMARK 3 B33 (A**2) : -0.57000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.66000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.207 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.180 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.202 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.319 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3789 ; 0.008 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3111 ; 0.001 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5275 ; 1.976 ; 1.661 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7141 ; 1.357 ; 1.576 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 375 ; 7.017 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 194 ;30.951 ;20.722 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 479 ;15.109 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;22.543 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 481 ; 0.116 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3949 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 943 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1494 ; 2.389 ; 3.205 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1493 ; 2.389 ; 3.203 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1871 ; 3.813 ; 4.780 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1872 ; 3.813 ; 4.782 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2295 ; 3.178 ; 3.626 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2296 ; 3.178 ; 3.626 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3405 ; 5.130 ; 5.406 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4263 ; 7.493 ;35.518 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4257 ; 7.483 ;35.477 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 2 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A B 5812 0.11 0.05 REMARK 3 2 D E 1126 0.08 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 196 REMARK 3 ORIGIN FOR THE GROUP (A): -0.2903 0.2533 42.5769 REMARK 3 T TENSOR REMARK 3 T11: 0.0467 T22: 0.1075 REMARK 3 T33: 0.0446 T12: -0.0268 REMARK 3 T13: -0.0133 T23: -0.0076 REMARK 3 L TENSOR REMARK 3 L11: 0.6870 L22: 1.6421 REMARK 3 L33: 1.0035 L12: 0.1476 REMARK 3 L13: -0.0094 L23: 0.2380 REMARK 3 S TENSOR REMARK 3 S11: -0.0596 S12: -0.0414 S13: -0.0685 REMARK 3 S21: -0.0479 S22: 0.0580 S23: -0.0281 REMARK 3 S31: -0.0498 S32: 0.1156 S33: 0.0016 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 10 B 196 REMARK 3 ORIGIN FOR THE GROUP (A): 26.2076 -11.5897 12.6195 REMARK 3 T TENSOR REMARK 3 T11: 0.1337 T22: 0.1069 REMARK 3 T33: 0.0117 T12: -0.0480 REMARK 3 T13: 0.0071 T23: -0.0128 REMARK 3 L TENSOR REMARK 3 L11: 1.3445 L22: 1.9379 REMARK 3 L33: 1.5268 L12: 0.1916 REMARK 3 L13: -0.6238 L23: -0.7256 REMARK 3 S TENSOR REMARK 3 S11: 0.1269 S12: -0.1769 S13: 0.0134 REMARK 3 S21: 0.0094 S22: -0.0570 S23: -0.0761 REMARK 3 S31: -0.2086 S32: 0.2347 S33: -0.0699 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D -7 D 5 REMARK 3 ORIGIN FOR THE GROUP (A): 0.1259 11.9904 21.7742 REMARK 3 T TENSOR REMARK 3 T11: 0.2247 T22: 0.1620 REMARK 3 T33: 0.1677 T12: -0.0794 REMARK 3 T13: 0.0189 T23: 0.0330 REMARK 3 L TENSOR REMARK 3 L11: 1.2003 L22: 5.8739 REMARK 3 L33: 1.6173 L12: 0.4832 REMARK 3 L13: 0.4614 L23: -2.1253 REMARK 3 S TENSOR REMARK 3 S11: -0.0410 S12: 0.2575 S13: 0.1682 REMARK 3 S21: -0.4112 S22: 0.1994 S23: 0.1867 REMARK 3 S31: 0.1877 S32: 0.1843 S33: -0.1584 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E -7 E 5 REMARK 3 ORIGIN FOR THE GROUP (A): 5.7307 -24.2394 15.0009 REMARK 3 T TENSOR REMARK 3 T11: 0.2269 T22: 0.2256 REMARK 3 T33: 0.2103 T12: -0.0407 REMARK 3 T13: 0.0324 T23: 0.0895 REMARK 3 L TENSOR REMARK 3 L11: 2.6274 L22: 5.8922 REMARK 3 L33: 1.7972 L12: 3.0407 REMARK 3 L13: -0.5561 L23: -0.4349 REMARK 3 S TENSOR REMARK 3 S11: -0.1977 S12: -0.2007 S13: 0.2079 REMARK 3 S21: -0.0623 S22: 0.2842 S23: 0.4872 REMARK 3 S31: 0.2722 S32: -0.2511 S33: -0.0866 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8FIL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-DEC-22. REMARK 100 THE DEPOSITION ID IS D_1000269070. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-SEP-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.953739 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : 1 VERTICAL AND 2 HORIZONTAL REMARK 200 FOCUSSING MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS, POINTLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36510 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.010 REMARK 200 RESOLUTION RANGE LOW (A) : 48.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : 0.11300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.01 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 1.29400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5KEG REMARK 200 REMARK 200 REMARK: THIN PLATE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: A3A-E72A (50 MM MES PH 6.0, 100 MM REMARK 280 NACL, 1 MM TCEP, 0.2 MM EDTA) WAS MIXED WITH OLIGONUCLEOTIDES REMARK 280 (10 MM TRIS/HCL PH 7.9, 1 MM EDTA) AT 0.85 MM AND 1.7 MM REMARK 280 RESPECTIVELY. DILUTION WAS DONE WITH PROTEIN BUFFER. THE MIXTURE REMARK 280 WAS ADDED TO CRYSTALLIZATION LIQUID 1 TO 1 AND THE MIXTURE WAS REMARK 280 PIPETTED ON SILICONIZED GLASS DISKS AND SEALED ON TOP OF A REMARK 280 RESERVOIR OF CRYSTALLIZATION LIQUID FOR HANGING DROP REMARK 280 CRYSTALLIZATION AT 12 DEGREES CELSIUS. THE CRYSTALLIZATION REMARK 280 LIQUID HAS THE FOLLOWING COMPOSITION: 100 MM BICINE AT PH 6.6, REMARK 280 200 MM NACL, 20 MM PUTRESCINE, 1 MM TCEP, 1 MM INOSITOL REMARK 280 HEXAPHOSPHATE (PHYTIC ACID) AND 45 % PENTAERYTHRITOL PROPOXYLATE REMARK 280 (5/4 PO/OH), VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 285K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 28.67600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 ALA A 3 REMARK 465 SER A 4 REMARK 465 PRO A 5 REMARK 465 ALA A 6 REMARK 465 SER A 7 REMARK 465 GLY A 8 REMARK 465 PRO A 9 REMARK 465 ASP A 41 REMARK 465 ASN A 42 REMARK 465 GLY A 43 REMARK 465 THR A 44 REMARK 465 GLN A 197 REMARK 465 GLY A 198 REMARK 465 ASN A 199 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 ALA B 3 REMARK 465 SER B 4 REMARK 465 PRO B 5 REMARK 465 ALA B 6 REMARK 465 SER B 7 REMARK 465 GLY B 8 REMARK 465 PRO B 9 REMARK 465 LYS B 47 REMARK 465 MET B 48 REMARK 465 ASP B 49 REMARK 465 GLN B 197 REMARK 465 GLY B 198 REMARK 465 ASN B 199 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 38 CD OE1 OE2 REMARK 470 VAL A 46 CG1 CG2 REMARK 470 LYS A 47 CG CD CE NZ REMARK 470 MET A 48 CG SD CE REMARK 470 ASP A 49 CG OD1 OD2 REMARK 470 ARG A 121 NE CZ NH1 NH2 REMARK 470 ASP B 41 CG OD1 OD2 REMARK 470 ASN B 42 CG OD1 ND2 REMARK 470 GLN B 83 CG CD OE1 NE2 REMARK 470 GLU B 181 CG CD OE1 OE2 REMARK 470 ASN B 196 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 138 OH TYR B 67 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC D -5 C3' - O3' - P ANGL. DEV. = -12.2 DEGREES REMARK 500 DC D -3 O4' - C1' - N1 ANGL. DEV. = 4.7 DEGREES REMARK 500 DT D -1 O4' - C1' - N1 ANGL. DEV. = -5.6 DEGREES REMARK 500 DC D 0 O4' - C1' - N1 ANGL. DEV. = -4.5 DEGREES REMARK 500 DG D 3 O4' - C1' - N9 ANGL. DEV. = 4.0 DEGREES REMARK 500 DC E -5 C3' - O3' - P ANGL. DEV. = -11.7 DEGREES REMARK 500 DC E -3 O4' - C1' - N1 ANGL. DEV. = 4.1 DEGREES REMARK 500 DC E 0 O4' - C1' - N1 ANGL. DEV. = -6.3 DEGREES REMARK 500 DG E 3 O4' - C1' - N9 ANGL. DEV. = 4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 29 31.82 -87.53 REMARK 500 MET A 48 107.27 -169.01 REMARK 500 ASN A 61 84.29 -154.23 REMARK 500 TRP A 104 15.51 59.48 REMARK 500 HIS B 29 41.00 -87.82 REMARK 500 SER B 45 -169.64 -128.11 REMARK 500 ASN B 61 82.65 -150.60 REMARK 500 TRP B 104 17.00 59.66 REMARK 500 REMARK 500 REMARK: NULL DBREF 8FIL A 1 199 UNP P31941 ABC3A_HUMAN 1 199 DBREF 8FIL B 1 199 UNP P31941 ABC3A_HUMAN 1 199 DBREF 8FIL D -7 5 PDB 8FIL 8FIL -7 5 DBREF 8FIL E -7 5 PDB 8FIL 8FIL -7 5 SEQADV 8FIL ALA A 72 UNP P31941 GLU 72 ENGINEERED MUTATION SEQADV 8FIL ALA B 72 UNP P31941 GLU 72 ENGINEERED MUTATION SEQRES 1 A 199 MET GLU ALA SER PRO ALA SER GLY PRO ARG HIS LEU MET SEQRES 2 A 199 ASP PRO HIS ILE PHE THR SER ASN PHE ASN ASN GLY ILE SEQRES 3 A 199 GLY ARG HIS LYS THR TYR LEU CYS TYR GLU VAL GLU ARG SEQRES 4 A 199 LEU ASP ASN GLY THR SER VAL LYS MET ASP GLN HIS ARG SEQRES 5 A 199 GLY PHE LEU HIS ASN GLN ALA LYS ASN LEU LEU CYS GLY SEQRES 6 A 199 PHE TYR GLY ARG HIS ALA ALA LEU ARG PHE LEU ASP LEU SEQRES 7 A 199 VAL PRO SER LEU GLN LEU ASP PRO ALA GLN ILE TYR ARG SEQRES 8 A 199 VAL THR TRP PHE ILE SER TRP SER PRO CYS PHE SER TRP SEQRES 9 A 199 GLY CYS ALA GLY GLU VAL ARG ALA PHE LEU GLN GLU ASN SEQRES 10 A 199 THR HIS VAL ARG LEU ARG ILE PHE ALA ALA ARG ILE TYR SEQRES 11 A 199 ASP TYR ASP PRO LEU TYR LYS GLU ALA LEU GLN MET LEU SEQRES 12 A 199 ARG ASP ALA GLY ALA GLN VAL SER ILE MET THR TYR ASP SEQRES 13 A 199 GLU PHE LYS HIS CYS TRP ASP THR PHE VAL ASP HIS GLN SEQRES 14 A 199 GLY CYS PRO PHE GLN PRO TRP ASP GLY LEU ASP GLU HIS SEQRES 15 A 199 SER GLN ALA LEU SER GLY ARG LEU ARG ALA ILE LEU GLN SEQRES 16 A 199 ASN GLN GLY ASN SEQRES 1 B 199 MET GLU ALA SER PRO ALA SER GLY PRO ARG HIS LEU MET SEQRES 2 B 199 ASP PRO HIS ILE PHE THR SER ASN PHE ASN ASN GLY ILE SEQRES 3 B 199 GLY ARG HIS LYS THR TYR LEU CYS TYR GLU VAL GLU ARG SEQRES 4 B 199 LEU ASP ASN GLY THR SER VAL LYS MET ASP GLN HIS ARG SEQRES 5 B 199 GLY PHE LEU HIS ASN GLN ALA LYS ASN LEU LEU CYS GLY SEQRES 6 B 199 PHE TYR GLY ARG HIS ALA ALA LEU ARG PHE LEU ASP LEU SEQRES 7 B 199 VAL PRO SER LEU GLN LEU ASP PRO ALA GLN ILE TYR ARG SEQRES 8 B 199 VAL THR TRP PHE ILE SER TRP SER PRO CYS PHE SER TRP SEQRES 9 B 199 GLY CYS ALA GLY GLU VAL ARG ALA PHE LEU GLN GLU ASN SEQRES 10 B 199 THR HIS VAL ARG LEU ARG ILE PHE ALA ALA ARG ILE TYR SEQRES 11 B 199 ASP TYR ASP PRO LEU TYR LYS GLU ALA LEU GLN MET LEU SEQRES 12 B 199 ARG ASP ALA GLY ALA GLN VAL SER ILE MET THR TYR ASP SEQRES 13 B 199 GLU PHE LYS HIS CYS TRP ASP THR PHE VAL ASP HIS GLN SEQRES 14 B 199 GLY CYS PRO PHE GLN PRO TRP ASP GLY LEU ASP GLU HIS SEQRES 15 B 199 SER GLN ALA LEU SER GLY ARG LEU ARG ALA ILE LEU GLN SEQRES 16 B 199 ASN GLN GLY ASN SEQRES 1 D 13 DT DG DC DG DC DT DT DC DG DC DG DC DT SEQRES 1 E 13 DT DG DC DG DC DT DT DC DG DC DG DC DT HET IHP A 201 36 HET CL A 202 1 HET IHP B 201 36 HET CL B 202 1 HETNAM IHP INOSITOL HEXAKISPHOSPHATE HETNAM CL CHLORIDE ION HETSYN IHP MYO-INOSITOL HEXAKISPHOSPHATE; INOSITOL 1,2,3,4,5,6- HETSYN 2 IHP HEXAKISPHOSPHATE FORMUL 5 IHP 2(C6 H18 O24 P6) FORMUL 6 CL 2(CL 1-) FORMUL 9 HOH *81(H2 O) HELIX 1 AA1 ASP A 14 PHE A 22 1 9 HELIX 2 AA2 ASN A 61 GLY A 65 5 5 HELIX 3 AA3 HIS A 70 GLN A 83 1 14 HELIX 4 AA4 CYS A 106 ASN A 117 1 12 HELIX 5 AA5 LEU A 135 ALA A 146 1 12 HELIX 6 AA6 THR A 154 VAL A 166 1 13 HELIX 7 AA7 GLY A 178 ASN A 196 1 19 HELIX 8 AA8 ASP B 14 ASN B 23 1 10 HELIX 9 AA9 ASN B 61 GLY B 65 5 5 HELIX 10 AB1 HIS B 70 VAL B 79 1 10 HELIX 11 AB2 PRO B 80 GLN B 83 5 4 HELIX 12 AB3 CYS B 106 ASN B 117 1 12 HELIX 13 AB4 LEU B 135 ALA B 146 1 12 HELIX 14 AB5 THR B 154 VAL B 166 1 13 HELIX 15 AB6 GLY B 178 ASN B 196 1 19 SHEET 1 AA1 5 ASP A 49 HIS A 56 0 SHEET 2 AA1 5 TYR A 32 ARG A 39 -1 N LEU A 33 O LEU A 55 SHEET 3 AA1 5 TYR A 90 ILE A 96 -1 O ARG A 91 N GLU A 38 SHEET 4 AA1 5 VAL A 120 ALA A 126 1 O ARG A 121 N VAL A 92 SHEET 5 AA1 5 GLN A 149 ILE A 152 1 O SER A 151 N ILE A 124 SHEET 1 AA2 5 HIS B 51 HIS B 56 0 SHEET 2 AA2 5 TYR B 32 LEU B 40 -1 N VAL B 37 O HIS B 51 SHEET 3 AA2 5 ILE B 89 TRP B 98 -1 O ARG B 91 N GLU B 38 SHEET 4 AA2 5 VAL B 120 ARG B 128 1 O ARG B 121 N TYR B 90 SHEET 5 AA2 5 GLN B 149 ILE B 152 1 O SER B 151 N ILE B 124 CRYST1 54.750 57.352 93.739 90.00 105.78 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018265 0.000000 0.005161 0.00000 SCALE2 0.000000 0.017436 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011086 0.00000