HEADER DNA BINDING PROTEIN 16-DEC-22 8FIM TITLE STRUCTURE OF APOBEC3A (E72A INACTIVE MUTANT) IN COMPLEX WITH TTC- TITLE 2 HAIRPIN DNA SUBSTRATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA DC->DU-EDITING ENZYME APOBEC-3A; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: A3A,PHORBOLIN-1; COMPND 5 EC: 3.5.4.38; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (5'-D(*TP*GP*CP*GP*CP*TP*TP*CP*GP*CP*GP*CP*T)-3'); COMPND 10 CHAIN: H, C; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: APOBEC3A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PETITE; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_TAXID: 9606 KEYWDS APOBEC, APOBEC3A, A3A, APOBEC3A E72A MUTANT, CANCER, DNA, MUTATION, KEYWDS 2 CYTIDINE DEAMINASE, HAIRPIN DNA, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.HARJES,G.B.JAMESON,E.HARJES,V.V.FILICHEV,H.M.KURUP REVDAT 2 18-SEP-24 8FIM 1 JRNL REVDAT 1 06-SEP-23 8FIM 0 JRNL AUTH S.HARJES,H.M.KURUP,A.E.RIEFFER,M.BAYARJARGAL,J.FILITCHEVA, JRNL AUTH 2 Y.SU,T.K.HALE,V.V.FILICHEV,E.HARJES,R.S.HARRIS,G.B.JAMESON JRNL TITL STRUCTURE-GUIDED INHIBITION OF THE CANCER DNA-MUTATING JRNL TITL 2 ENZYME APOBEC3A. JRNL REF NAT COMMUN V. 14 6382 2023 JRNL REFN ESSN 2041-1723 JRNL PMID 37821454 JRNL DOI 10.1038/S41467-023-42174-W REMARK 2 REMARK 2 RESOLUTION. 2.22 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.22 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 24929 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.240 REMARK 3 R VALUE (WORKING SET) : 0.238 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1309 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.22 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1560 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 81.63 REMARK 3 BIN R VALUE (WORKING SET) : 0.3720 REMARK 3 BIN FREE R VALUE SET COUNT : 75 REMARK 3 BIN FREE R VALUE : 0.4190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3026 REMARK 3 NUCLEIC ACID ATOMS : 520 REMARK 3 HETEROGEN ATOMS : 81 REMARK 3 SOLVENT ATOMS : 16 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 51.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.59000 REMARK 3 B22 (A**2) : 1.02000 REMARK 3 B33 (A**2) : -0.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.65000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.322 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.242 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.299 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 27.009 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3789 ; 0.008 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3076 ; 0.002 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5272 ; 1.870 ; 1.661 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7056 ; 1.319 ; 1.577 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 374 ; 7.364 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 196 ;32.704 ;21.071 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 472 ;16.256 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;20.660 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 483 ; 0.111 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3952 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 938 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 2 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 10 196 B 10 196 5940 0.110 0.050 REMARK 3 2 H -7 5 C -7 5 1160 0.060 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 196 REMARK 3 ORIGIN FOR THE GROUP (A): 1.4180 -0.0100 42.3200 REMARK 3 T TENSOR REMARK 3 T11: 0.6446 T22: 0.0291 REMARK 3 T33: 0.3230 T12: -0.0297 REMARK 3 T13: -0.1604 T23: -0.0295 REMARK 3 L TENSOR REMARK 3 L11: 1.6446 L22: 0.8938 REMARK 3 L33: 1.1965 L12: -0.0285 REMARK 3 L13: 0.0523 L23: 0.1943 REMARK 3 S TENSOR REMARK 3 S11: -0.0166 S12: -0.0365 S13: -0.0321 REMARK 3 S21: -0.0936 S22: 0.1135 S23: 0.0097 REMARK 3 S31: -0.0212 S32: 0.1375 S33: -0.0968 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 10 B 196 REMARK 3 ORIGIN FOR THE GROUP (A): 26.7500 -10.8810 12.3800 REMARK 3 T TENSOR REMARK 3 T11: 0.6749 T22: 0.0624 REMARK 3 T33: 0.2906 T12: -0.0299 REMARK 3 T13: -0.1730 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.9950 L22: 1.7657 REMARK 3 L33: 3.5751 L12: 0.0421 REMARK 3 L13: -0.3544 L23: -0.6603 REMARK 3 S TENSOR REMARK 3 S11: 0.0470 S12: -0.1858 S13: -0.0458 REMARK 3 S21: -0.0242 S22: 0.0653 S23: -0.0442 REMARK 3 S31: -0.2572 S32: 0.3207 S33: -0.1123 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C -7 C 5 REMARK 3 ORIGIN FOR THE GROUP (A): 1.3600 11.9280 21.3080 REMARK 3 T TENSOR REMARK 3 T11: 0.7705 T22: 0.3056 REMARK 3 T33: 0.5429 T12: -0.1549 REMARK 3 T13: 0.0068 T23: 0.2113 REMARK 3 L TENSOR REMARK 3 L11: 0.6661 L22: 5.6585 REMARK 3 L33: 2.5155 L12: -0.3416 REMARK 3 L13: 0.9778 L23: -1.2606 REMARK 3 S TENSOR REMARK 3 S11: 0.0328 S12: 0.3036 S13: 0.2509 REMARK 3 S21: -0.2033 S22: 0.2665 S23: 0.1027 REMARK 3 S31: 0.0185 S32: 0.2121 S33: -0.2993 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H -7 H 5 REMARK 3 ORIGIN FOR THE GROUP (A): 6.3010 -23.7180 15.2580 REMARK 3 T TENSOR REMARK 3 T11: 0.7737 T22: 0.3094 REMARK 3 T33: 0.5550 T12: -0.1194 REMARK 3 T13: -0.0395 T23: 0.2339 REMARK 3 L TENSOR REMARK 3 L11: 3.3497 L22: 4.6385 REMARK 3 L33: 0.9738 L12: 2.2688 REMARK 3 L13: -0.2101 L23: 0.9157 REMARK 3 S TENSOR REMARK 3 S11: -0.2837 S12: -0.3122 S13: 0.2095 REMARK 3 S21: -0.0455 S22: 0.3262 S23: 0.6974 REMARK 3 S31: 0.3670 S32: -0.1346 S33: -0.0425 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 8FIM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-DEC-22. REMARK 100 THE DEPOSITION ID IS D_1000268775. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUN-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.953739 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : 1 VERTICAL AND 2 HORIZONTAL REMARK 200 FOCUSSING MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS, POINTLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26243 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.220 REMARK 200 RESOLUTION RANGE LOW (A) : 47.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.22 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 1.53500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5KEG REMARK 200 REMARK 200 REMARK: TINY FLATTENED NEEDLE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: A3A-E72A (50 MM MES PH 6.0, 100 MM REMARK 280 NACL, 1 MM TCEP, 0.2 MM EDTA) WAS MIXED WITH OLIGONUCLEOTIDES REMARK 280 (10 MM TRIS/HCL PH 7.9, 1 MM EDTA) AT 0.85 MM AND 1.7 MM REMARK 280 RESPECTIVELY. DILUTION WAS DONE WITH PROTEIN BUFFER. THE MIXTURE REMARK 280 WAS ADDED TO CRYSTALLIZATION LIQUID 1 TO 1 AND THE MIXTURE WAS REMARK 280 PIPETTED ON SILICONIZED GLASS DISKS AND SEALED ON TOP OF A REMARK 280 RESERVOIR OF CRYSTALLIZATION LIQUID FOR HANGING DROP REMARK 280 CRYSTALLIZATION AT 12 DEGREES CELSIUS. THE CRYSTALLIZATION REMARK 280 LIQUID HAS THE FOLLOWING COMPOSITION: 100 MM BICINE AT PH 6.6, REMARK 280 200 MM NACL, 20 MM PUTRESCINE, 1 MM TCEP, 1 MM INOSITOL REMARK 280 HEXAPHOSPHATE (PHYTIC ACID) AND 45 % PENTAERYTHRITOL PROPOXYLATE REMARK 280 (5/4 PO/OH), VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 285K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 28.45200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -60.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 ALA A 3 REMARK 465 SER A 4 REMARK 465 PRO A 5 REMARK 465 ALA A 6 REMARK 465 SER A 7 REMARK 465 GLY A 8 REMARK 465 PRO A 9 REMARK 465 GLN A 197 REMARK 465 GLY A 198 REMARK 465 ASN A 199 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 ALA B 3 REMARK 465 SER B 4 REMARK 465 PRO B 5 REMARK 465 ALA B 6 REMARK 465 SER B 7 REMARK 465 GLY B 8 REMARK 465 PRO B 9 REMARK 465 GLN B 197 REMARK 465 GLY B 198 REMARK 465 ASN B 199 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 10 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 42 CG OD1 ND2 REMARK 470 LYS A 47 CG CD CE NZ REMARK 470 ARG A 52 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 62 CG CD1 CD2 REMARK 470 LEU A 63 CG CD1 CD2 REMARK 470 GLU A 181 CG CD OE1 OE2 REMARK 470 ASN A 196 CG OD1 ND2 REMARK 470 VAL B 46 CG1 CG2 REMARK 470 LYS B 47 CG CD CE NZ REMARK 470 MET B 48 CG SD CE REMARK 470 LEU B 62 CG CD1 CD2 REMARK 470 LEU B 63 CG CD1 CD2 REMARK 470 GLU B 181 CG CD OE1 OE2 REMARK 470 ASN B 196 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 189 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 DG H -6 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DC H -5 C3' - O3' - P ANGL. DEV. = -8.8 DEGREES REMARK 500 DC H -3 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 DC C -5 C3' - O3' - P ANGL. DEV. = -11.1 DEGREES REMARK 500 DC C -3 O4' - C1' - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 117 79.78 -110.56 REMARK 500 ASP B 41 68.36 -69.58 REMARK 500 ASN B 42 84.09 55.62 REMARK 500 VAL B 46 100.62 69.17 REMARK 500 MET B 48 -145.73 -164.96 REMARK 500 ASN B 117 76.43 -111.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 70 ND1 REMARK 620 2 CYS A 101 SG 111.2 REMARK 620 3 CYS A 106 SG 109.7 90.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 70 ND1 REMARK 620 2 CYS B 101 SG 98.6 REMARK 620 3 CYS B 106 SG 125.7 84.7 REMARK 620 N 1 2 DBREF 8FIM A 1 199 UNP P31941 ABC3A_HUMAN 1 199 DBREF 8FIM B 1 199 UNP P31941 ABC3A_HUMAN 1 199 DBREF 8FIM H -7 5 PDB 8FIM 8FIM -7 5 DBREF 8FIM C -7 5 PDB 8FIM 8FIM -7 5 SEQADV 8FIM ALA A 72 UNP P31941 GLU 72 ENGINEERED MUTATION SEQADV 8FIM ALA B 72 UNP P31941 GLU 72 ENGINEERED MUTATION SEQRES 1 A 199 MET GLU ALA SER PRO ALA SER GLY PRO ARG HIS LEU MET SEQRES 2 A 199 ASP PRO HIS ILE PHE THR SER ASN PHE ASN ASN GLY ILE SEQRES 3 A 199 GLY ARG HIS LYS THR TYR LEU CYS TYR GLU VAL GLU ARG SEQRES 4 A 199 LEU ASP ASN GLY THR SER VAL LYS MET ASP GLN HIS ARG SEQRES 5 A 199 GLY PHE LEU HIS ASN GLN ALA LYS ASN LEU LEU CYS GLY SEQRES 6 A 199 PHE TYR GLY ARG HIS ALA ALA LEU ARG PHE LEU ASP LEU SEQRES 7 A 199 VAL PRO SER LEU GLN LEU ASP PRO ALA GLN ILE TYR ARG SEQRES 8 A 199 VAL THR TRP PHE ILE SER TRP SER PRO CYS PHE SER TRP SEQRES 9 A 199 GLY CYS ALA GLY GLU VAL ARG ALA PHE LEU GLN GLU ASN SEQRES 10 A 199 THR HIS VAL ARG LEU ARG ILE PHE ALA ALA ARG ILE TYR SEQRES 11 A 199 ASP TYR ASP PRO LEU TYR LYS GLU ALA LEU GLN MET LEU SEQRES 12 A 199 ARG ASP ALA GLY ALA GLN VAL SER ILE MET THR TYR ASP SEQRES 13 A 199 GLU PHE LYS HIS CYS TRP ASP THR PHE VAL ASP HIS GLN SEQRES 14 A 199 GLY CYS PRO PHE GLN PRO TRP ASP GLY LEU ASP GLU HIS SEQRES 15 A 199 SER GLN ALA LEU SER GLY ARG LEU ARG ALA ILE LEU GLN SEQRES 16 A 199 ASN GLN GLY ASN SEQRES 1 B 199 MET GLU ALA SER PRO ALA SER GLY PRO ARG HIS LEU MET SEQRES 2 B 199 ASP PRO HIS ILE PHE THR SER ASN PHE ASN ASN GLY ILE SEQRES 3 B 199 GLY ARG HIS LYS THR TYR LEU CYS TYR GLU VAL GLU ARG SEQRES 4 B 199 LEU ASP ASN GLY THR SER VAL LYS MET ASP GLN HIS ARG SEQRES 5 B 199 GLY PHE LEU HIS ASN GLN ALA LYS ASN LEU LEU CYS GLY SEQRES 6 B 199 PHE TYR GLY ARG HIS ALA ALA LEU ARG PHE LEU ASP LEU SEQRES 7 B 199 VAL PRO SER LEU GLN LEU ASP PRO ALA GLN ILE TYR ARG SEQRES 8 B 199 VAL THR TRP PHE ILE SER TRP SER PRO CYS PHE SER TRP SEQRES 9 B 199 GLY CYS ALA GLY GLU VAL ARG ALA PHE LEU GLN GLU ASN SEQRES 10 B 199 THR HIS VAL ARG LEU ARG ILE PHE ALA ALA ARG ILE TYR SEQRES 11 B 199 ASP TYR ASP PRO LEU TYR LYS GLU ALA LEU GLN MET LEU SEQRES 12 B 199 ARG ASP ALA GLY ALA GLN VAL SER ILE MET THR TYR ASP SEQRES 13 B 199 GLU PHE LYS HIS CYS TRP ASP THR PHE VAL ASP HIS GLN SEQRES 14 B 199 GLY CYS PRO PHE GLN PRO TRP ASP GLY LEU ASP GLU HIS SEQRES 15 B 199 SER GLN ALA LEU SER GLY ARG LEU ARG ALA ILE LEU GLN SEQRES 16 B 199 ASN GLN GLY ASN SEQRES 1 H 13 DT DG DC DG DC DT DT DC DG DC DG DC DT SEQRES 1 C 13 DT DG DC DG DC DT DT DC DG DC DG DC DT HET IHP A 201 36 HET ZN A 202 1 HET CL A 203 1 HET PO4 A 204 5 HET IHP B 201 36 HET ZN B 202 1 HET CL B 203 1 HETNAM IHP INOSITOL HEXAKISPHOSPHATE HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION HETNAM PO4 PHOSPHATE ION HETSYN IHP MYO-INOSITOL HEXAKISPHOSPHATE; INOSITOL 1,2,3,4,5,6- HETSYN 2 IHP HEXAKISPHOSPHATE FORMUL 5 IHP 2(C6 H18 O24 P6) FORMUL 6 ZN 2(ZN 2+) FORMUL 7 CL 2(CL 1-) FORMUL 8 PO4 O4 P 3- FORMUL 12 HOH *16(H2 O) HELIX 1 AA1 ASP A 14 ASN A 23 1 10 HELIX 2 AA2 ASN A 61 GLY A 65 5 5 HELIX 3 AA3 HIS A 70 LEU A 78 1 9 HELIX 4 AA4 LEU A 78 GLN A 83 1 6 HELIX 5 AA5 GLY A 105 ASN A 117 1 13 HELIX 6 AA6 LEU A 135 ALA A 146 1 12 HELIX 7 AA7 THR A 154 VAL A 166 1 13 HELIX 8 AA8 GLY A 178 ASN A 196 1 19 HELIX 9 AA9 ASP B 14 ASN B 23 1 10 HELIX 10 AB1 ASN B 61 GLY B 65 5 5 HELIX 11 AB2 HIS B 70 LEU B 78 1 9 HELIX 12 AB3 VAL B 79 GLN B 83 5 5 HELIX 13 AB4 GLY B 105 ASN B 117 1 13 HELIX 14 AB5 LEU B 135 ALA B 146 1 12 HELIX 15 AB6 THR B 154 VAL B 166 1 13 HELIX 16 AB7 GLY B 178 ASN B 196 1 19 SHEET 1 AA1 5 THR A 44 HIS A 56 0 SHEET 2 AA1 5 TYR A 32 ASP A 41 -1 N ARG A 39 O VAL A 46 SHEET 3 AA1 5 ILE A 89 TRP A 98 -1 O ARG A 91 N GLU A 38 SHEET 4 AA1 5 VAL A 120 ARG A 128 1 O ARG A 121 N TYR A 90 SHEET 5 AA1 5 GLN A 149 ILE A 152 1 O SER A 151 N ILE A 124 SHEET 1 AA2 5 HIS B 51 HIS B 56 0 SHEET 2 AA2 5 TYR B 32 ARG B 39 -1 N LEU B 33 O LEU B 55 SHEET 3 AA2 5 TYR B 90 TRP B 98 -1 O ARG B 91 N GLU B 38 SHEET 4 AA2 5 VAL B 120 ARG B 128 1 O ARG B 121 N TYR B 90 SHEET 5 AA2 5 GLN B 149 ILE B 152 1 O SER B 151 N ILE B 124 LINK ND1 HIS A 70 ZN ZN A 202 1555 1555 1.84 LINK SG CYS A 101 ZN ZN A 202 1555 1555 2.49 LINK SG CYS A 106 ZN ZN A 202 1555 1555 1.98 LINK ND1 HIS B 70 ZN ZN B 202 1555 1555 2.00 LINK SG CYS B 101 ZN ZN B 202 1555 1555 2.65 LINK SG CYS B 106 ZN ZN B 202 1555 1555 2.01 CRYST1 53.917 56.904 91.549 90.00 103.57 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018547 0.000000 0.004478 0.00000 SCALE2 0.000000 0.017573 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011237 0.00000