HEADER TRANSFERASE 20-DEC-22 8FJM TITLE CRYSTAL STRUCTURE OF THE TRYPANOSOMA BRUCEI DOT1A HISTONE H3K76 TITLE 2 METHYLTRANSFERASE IN COMPLEX WITH ADOHCY - P212121 SPACE GROUP COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-79 SPECIFIC; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HISTONE H3-K79 METHYLTRANSFERASE, DOT1A; COMPND 5 EC: 2.1.1.360; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI BRUCEI TREU927; SOURCE 3 ORGANISM_TAXID: 185431; SOURCE 4 STRAIN: LISTER; SOURCE 5 GENE: TB08.26N11.380, TB927.8.1920; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS HISTONE LYSINE METHYLTRANSFERASE, HISTONE-MODIFYING ENZYME, DOT1A, KEYWDS 2 TRYPANOSOMA BRUCEI, ADOHCY COMPLEX, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR V.S.FRISBIE,H.HASHIMOTO,E.W.DEBLER REVDAT 2 04-SEP-24 8FJM 1 JRNL REVDAT 1 07-FEB-24 8FJM 0 JRNL AUTH V.S.FRISBIE,H.HASHIMOTO,Y.XIE,F.N.DE LUNA VITORINO,J.BAEZA, JRNL AUTH 2 T.NGUYEN,Z.YUAN,J.KISELAR,B.A.GARCIA,E.W.DEBLER JRNL TITL TWO DOT1 ENZYMES COOPERATIVELY MEDIATE EFFICIENT JRNL TITL 2 UBIQUITIN-INDEPENDENT HISTONE H3 LYSINE 76 TRI-METHYLATION JRNL TITL 3 IN KINETOPLASTIDS. JRNL REF NAT COMMUN V. 15 2467 2024 JRNL REFN ESSN 2041-1723 JRNL PMID 38503750 JRNL DOI 10.1038/S41467-024-46637-6 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.81 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 66.1 REMARK 3 NUMBER OF REFLECTIONS : 42001 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.750 REMARK 3 FREE R VALUE TEST SET COUNT : 2796 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.8100 - 5.1500 1.00 4220 210 0.1789 0.2051 REMARK 3 2 5.1500 - 4.0900 1.00 4254 218 0.1283 0.1293 REMARK 3 3 4.0900 - 3.5700 0.99 4197 209 0.1283 0.1438 REMARK 3 4 3.5700 - 3.2500 1.00 4232 208 0.1459 0.1700 REMARK 3 5 3.2500 - 3.0100 0.97 4104 195 0.1528 0.1896 REMARK 3 6 3.0100 - 2.8400 0.92 3915 200 0.1558 0.1830 REMARK 3 7 2.8400 - 2.6900 0.79 3363 156 0.1716 0.2311 REMARK 3 8 2.6900 - 2.5800 0.76 3194 158 0.1654 0.2228 REMARK 3 9 2.5800 - 2.4800 0.71 2962 151 0.1699 0.2032 REMARK 3 10 2.4800 - 2.3900 0.66 2832 137 0.1624 0.2079 REMARK 3 11 2.3900 - 2.3200 0.63 2636 132 0.1697 0.2124 REMARK 3 12 2.3200 - 2.2500 0.60 2543 130 0.1821 0.1863 REMARK 3 13 2.2500 - 2.1900 0.57 2396 125 0.1973 0.2227 REMARK 3 14 2.1900 - 2.1400 0.52 2205 114 0.2104 0.2374 REMARK 3 15 2.1400 - 2.0900 0.50 2101 108 0.2139 0.2593 REMARK 3 16 2.0900 - 2.0500 0.44 1876 96 0.2349 0.2392 REMARK 3 17 2.0500 - 2.0000 0.38 1606 78 0.2238 0.2712 REMARK 3 18 2.0000 - 1.9700 0.30 1305 66 0.2259 0.2699 REMARK 3 19 1.9700 - 1.9300 0.27 1130 56 0.2358 0.3350 REMARK 3 20 1.9300 - 1.9000 0.23 985 49 0.2634 0.2969 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.162 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.404 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.52 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 4072 REMARK 3 ANGLE : 0.749 5499 REMARK 3 CHIRALITY : 0.044 600 REMARK 3 PLANARITY : 0.007 707 REMARK 3 DIHEDRAL : 15.204 1530 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 45 THROUGH 78 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.1715 -5.8600 -33.1229 REMARK 3 T TENSOR REMARK 3 T11: 0.2185 T22: 0.1792 REMARK 3 T33: 0.2034 T12: 0.0797 REMARK 3 T13: -0.0102 T23: -0.0197 REMARK 3 L TENSOR REMARK 3 L11: 1.3026 L22: 1.4569 REMARK 3 L33: 4.9937 L12: -0.7144 REMARK 3 L13: 1.7592 L23: -1.0708 REMARK 3 S TENSOR REMARK 3 S11: 0.2684 S12: 0.3017 S13: -0.3362 REMARK 3 S21: -0.1601 S22: -0.1216 S23: -0.0031 REMARK 3 S31: 0.5996 S32: 0.4903 S33: -0.1937 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 79 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.5867 17.6520 -32.5084 REMARK 3 T TENSOR REMARK 3 T11: 0.2240 T22: 0.2205 REMARK 3 T33: 0.1619 T12: 0.0571 REMARK 3 T13: 0.0520 T23: 0.0462 REMARK 3 L TENSOR REMARK 3 L11: 1.5734 L22: 8.3710 REMARK 3 L33: 5.3535 L12: 2.8795 REMARK 3 L13: 1.4460 L23: 4.3913 REMARK 3 S TENSOR REMARK 3 S11: 0.0464 S12: 0.2419 S13: 0.2053 REMARK 3 S21: -0.3956 S22: 0.0176 S23: 0.1138 REMARK 3 S31: -0.4614 S32: 0.0612 S33: -0.0785 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 105 THROUGH 123 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.0144 7.2698 -25.3134 REMARK 3 T TENSOR REMARK 3 T11: 0.1106 T22: 0.1290 REMARK 3 T33: 0.1303 T12: 0.0370 REMARK 3 T13: 0.0044 T23: 0.0159 REMARK 3 L TENSOR REMARK 3 L11: 2.4477 L22: 4.1093 REMARK 3 L33: 4.9755 L12: -0.4229 REMARK 3 L13: -0.5701 L23: 0.6807 REMARK 3 S TENSOR REMARK 3 S11: 0.0763 S12: 0.1092 S13: 0.1369 REMARK 3 S21: 0.1112 S22: 0.0742 S23: -0.1760 REMARK 3 S31: -0.3317 S32: 0.2025 S33: -0.1711 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 124 THROUGH 160 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.3925 6.7216 -20.8079 REMARK 3 T TENSOR REMARK 3 T11: 0.0607 T22: 0.1581 REMARK 3 T33: 0.1128 T12: 0.0236 REMARK 3 T13: 0.0046 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 2.1802 L22: 5.2857 REMARK 3 L33: 3.8758 L12: 0.9826 REMARK 3 L13: 0.9062 L23: 1.2646 REMARK 3 S TENSOR REMARK 3 S11: 0.0582 S12: -0.0891 S13: -0.0327 REMARK 3 S21: -0.1033 S22: -0.0755 S23: 0.0550 REMARK 3 S31: -0.0787 S32: -0.3506 S33: 0.0005 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 161 THROUGH 200 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.2915 14.6567 -22.9458 REMARK 3 T TENSOR REMARK 3 T11: 0.1945 T22: 0.1888 REMARK 3 T33: 0.2150 T12: 0.0819 REMARK 3 T13: 0.0430 T23: 0.0075 REMARK 3 L TENSOR REMARK 3 L11: 1.6279 L22: 1.5337 REMARK 3 L33: 2.6005 L12: -0.1982 REMARK 3 L13: 0.4076 L23: -0.8014 REMARK 3 S TENSOR REMARK 3 S11: 0.0131 S12: 0.0767 S13: 0.1358 REMARK 3 S21: 0.0386 S22: 0.0622 S23: 0.1838 REMARK 3 S31: -0.3988 S32: -0.4648 S33: -0.0504 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 201 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.4439 5.2163 -8.7756 REMARK 3 T TENSOR REMARK 3 T11: 0.0981 T22: 0.0682 REMARK 3 T33: 0.1090 T12: 0.0126 REMARK 3 T13: -0.0114 T23: 0.0164 REMARK 3 L TENSOR REMARK 3 L11: 3.3300 L22: 2.6368 REMARK 3 L33: 4.6607 L12: 1.0052 REMARK 3 L13: -1.1573 L23: -0.5506 REMARK 3 S TENSOR REMARK 3 S11: 0.0234 S12: -0.0957 S13: 0.1200 REMARK 3 S21: 0.0764 S22: 0.0543 S23: 0.0061 REMARK 3 S31: -0.1108 S32: -0.0254 S33: -0.0763 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 246 THROUGH 295 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.9693 -0.7518 -15.4736 REMARK 3 T TENSOR REMARK 3 T11: 0.0889 T22: 0.1342 REMARK 3 T33: 0.1630 T12: -0.0144 REMARK 3 T13: -0.0026 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 1.7234 L22: 2.0117 REMARK 3 L33: 5.2943 L12: -0.9664 REMARK 3 L13: 0.3219 L23: -1.3567 REMARK 3 S TENSOR REMARK 3 S11: 0.0725 S12: 0.0690 S13: 0.1032 REMARK 3 S21: 0.0368 S22: -0.1194 S23: -0.1873 REMARK 3 S31: 0.0102 S32: 0.4520 S33: 0.0659 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 44 THROUGH 123 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.4779 -32.4243 -31.4576 REMARK 3 T TENSOR REMARK 3 T11: 0.2248 T22: 0.1606 REMARK 3 T33: 0.1425 T12: -0.0533 REMARK 3 T13: -0.0287 T23: 0.0273 REMARK 3 L TENSOR REMARK 3 L11: 1.3542 L22: 2.8582 REMARK 3 L33: 3.5828 L12: 0.4368 REMARK 3 L13: 0.2879 L23: 0.3148 REMARK 3 S TENSOR REMARK 3 S11: -0.1952 S12: 0.1490 S13: -0.0471 REMARK 3 S21: -0.1980 S22: 0.0774 S23: -0.1511 REMARK 3 S31: -0.3587 S32: 0.0631 S33: 0.0942 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 124 THROUGH 274 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.7146 -36.3991 -14.2035 REMARK 3 T TENSOR REMARK 3 T11: 0.1358 T22: 0.1554 REMARK 3 T33: 0.1485 T12: 0.0424 REMARK 3 T13: 0.0022 T23: 0.0104 REMARK 3 L TENSOR REMARK 3 L11: 1.5810 L22: 1.3491 REMARK 3 L33: 3.3846 L12: 0.1309 REMARK 3 L13: 1.3017 L23: -0.1089 REMARK 3 S TENSOR REMARK 3 S11: -0.1549 S12: -0.1789 S13: 0.0762 REMARK 3 S21: 0.0253 S22: 0.0320 S23: 0.0532 REMARK 3 S31: -0.3369 S32: -0.3634 S33: 0.0850 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 275 THROUGH 295 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.3348 -25.2223 -22.0040 REMARK 3 T TENSOR REMARK 3 T11: 0.3356 T22: 0.1550 REMARK 3 T33: 0.2213 T12: -0.0039 REMARK 3 T13: -0.0667 T23: 0.0244 REMARK 3 L TENSOR REMARK 3 L11: 1.0788 L22: 3.3664 REMARK 3 L33: 4.6762 L12: 1.4160 REMARK 3 L13: -1.0659 L23: -0.8349 REMARK 3 S TENSOR REMARK 3 S11: -0.2537 S12: 0.1981 S13: 0.2756 REMARK 3 S21: -0.1889 S22: 0.2614 S23: 0.3365 REMARK 3 S31: -1.0597 S32: -0.3295 S33: -0.0839 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8FJM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JAN-23. REMARK 100 THE DEPOSITION ID IS D_1000270225. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47091 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 40.810 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 9.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.16100 REMARK 200 FOR THE DATA SET : 14.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 1.32300 REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% (W/V) PEG 3,000, 200 MM CALCIUM REMARK 280 ACETATE, 100 MM TRIS-HCL, PH 7.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.96700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.05750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.81250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 85.05750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.96700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.81250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 39 REMARK 465 PRO A 40 REMARK 465 HIS A 41 REMARK 465 MET A 42 REMARK 465 PRO A 43 REMARK 465 LYS A 44 REMARK 465 GLY B 39 REMARK 465 PRO B 40 REMARK 465 HIS B 41 REMARK 465 MET B 42 REMARK 465 PRO B 43 REMARK 465 ILE B 98 REMARK 465 THR B 99 REMARK 465 GLU B 100 REMARK 465 VAL B 101 REMARK 465 SER B 102 REMARK 465 GLY B 103 REMARK 465 SER B 104 REMARK 465 ARG B 105 REMARK 465 HIS B 106 REMARK 465 LEU B 107 REMARK 465 CYS B 108 REMARK 465 ALA B 109 REMARK 465 LYS B 110 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 44 CG CD CE NZ REMARK 470 ARG B 97 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH12 ARG A 260 O HOH A 402 1.54 REMARK 500 NH2 ARG A 92 O HOH A 401 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 532 O HOH B 460 4445 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 206 -18.91 79.14 REMARK 500 HIS A 252 26.06 -146.07 REMARK 500 CYS A 283 129.92 -173.72 REMARK 500 PHE B 206 -18.99 78.03 REMARK 500 HIS B 252 25.35 -145.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 69 SG REMARK 620 2 CYS A 72 SG 115.5 REMARK 620 3 CYS A 77 SG 105.9 110.9 REMARK 620 4 CYS A 79 SG 111.4 99.4 113.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 207 OE2 REMARK 620 2 ARG A 236 O 85.5 REMARK 620 3 HOH A 473 O 83.0 83.7 REMARK 620 4 GLU B 207 OE1 112.1 72.8 150.4 REMARK 620 5 ACT B 302 O 89.1 99.0 171.4 37.0 REMARK 620 6 HOH B 535 O 169.0 96.9 86.7 78.8 101.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 304 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 207 OE1 REMARK 620 2 GLU B 207 OE2 141.8 REMARK 620 3 ARG B 236 O 141.1 2.6 REMARK 620 4 ACT B 302 O 142.4 4.3 2.2 REMARK 620 5 ACT B 302 OXT 141.8 5.9 3.6 1.8 REMARK 620 6 HOH B 467 O 144.6 2.8 4.4 4.9 6.7 REMARK 620 7 HOH B 533 O 145.5 5.5 4.7 3.1 4.0 4.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 69 SG REMARK 620 2 CYS B 72 SG 117.8 REMARK 620 3 CYS B 77 SG 106.4 109.8 REMARK 620 4 CYS B 79 SG 110.4 97.5 115.2 REMARK 620 N 1 2 3 DBREF 8FJM A 43 295 UNP Q581Z0 Q581Z0_TRYB2 43 295 DBREF 8FJM B 43 295 UNP Q581Z0 Q581Z0_TRYB2 43 295 SEQADV 8FJM GLY A 39 UNP Q581Z0 EXPRESSION TAG SEQADV 8FJM PRO A 40 UNP Q581Z0 EXPRESSION TAG SEQADV 8FJM HIS A 41 UNP Q581Z0 EXPRESSION TAG SEQADV 8FJM MET A 42 UNP Q581Z0 EXPRESSION TAG SEQADV 8FJM SER A 187 UNP Q581Z0 PRO 187 VARIANT SEQADV 8FJM GLY B 39 UNP Q581Z0 EXPRESSION TAG SEQADV 8FJM PRO B 40 UNP Q581Z0 EXPRESSION TAG SEQADV 8FJM HIS B 41 UNP Q581Z0 EXPRESSION TAG SEQADV 8FJM MET B 42 UNP Q581Z0 EXPRESSION TAG SEQADV 8FJM SER B 187 UNP Q581Z0 PRO 187 VARIANT SEQRES 1 A 257 GLY PRO HIS MET PRO LYS GLY GLU LEU GLY ALA GLY THR SEQRES 2 A 257 PRO HIS GLU PRO TYR ASN LEU PRO LEU ARG GLY ASN PRO SEQRES 3 A 257 ASN LYS SER GLY CYS HIS HIS CYS LEU ALA ASP GLN CYS SEQRES 4 A 257 HIS CYS VAL PHE PHE GLU ARG LEU LEU ASP ALA THR PHE SEQRES 5 A 257 ARG ARG LEU ASP ILE LYS ARG ILE THR GLU VAL SER GLY SEQRES 6 A 257 SER ARG HIS LEU CYS ALA LYS SER LEU LEU PRO THR PHE SEQRES 7 A 257 VAL SER ARG MET VAL ARG LEU MET GLU ILE THR SER GLU SEQRES 8 A 257 ASP THR PHE TYR ASP LEU GLY CYS GLY ASN GLY SER ILE SEQRES 9 A 257 LEU PHE GLN VAL ALA PHE LEU THR GLY ALA ARG CYS VAL SEQRES 10 A 257 GLY ILE GLU ILE SER GLU HIS ASN ALA LYS VAL ALA LYS SEQRES 11 A 257 LYS ALA TRP GLU VAL ILE ARG PRO GLU LEU GLU GLY SER SEQRES 12 A 257 SER GLY ARG SER MET SER GLU VAL ASN ILE ILE THR SER SEQRES 13 A 257 ASP MET THR LYS ILE LEU ALA ASP GLU ARG LEU PHE GLU SEQRES 14 A 257 SER GLU ARG GLY LYS THR VAL ILE LEU LEU SER ASN LEU SEQRES 15 A 257 LEU PHE PRO LYS SER LEU THR HIS TYR LEU SER GLU ARG SEQRES 16 A 257 PHE ARG ARG VAL PRO SER GLY THR ARG ILE LEU CYS PHE SEQRES 17 A 257 ASP ASP LEU TYR PRO HIS SER ARG SER VAL ALA ALA ILE SEQRES 18 A 257 ARG ASP PRO GLU ALA PHE ARG LEU PHE ALA MET THR ASP SEQRES 19 A 257 TYR ARG TRP GLN GLU CYS SER VAL GLU TRP CYS THR ARG SEQRES 20 A 257 ASP GLY PRO PHE PHE ILE HIS ARG ARG ARG SEQRES 1 B 257 GLY PRO HIS MET PRO LYS GLY GLU LEU GLY ALA GLY THR SEQRES 2 B 257 PRO HIS GLU PRO TYR ASN LEU PRO LEU ARG GLY ASN PRO SEQRES 3 B 257 ASN LYS SER GLY CYS HIS HIS CYS LEU ALA ASP GLN CYS SEQRES 4 B 257 HIS CYS VAL PHE PHE GLU ARG LEU LEU ASP ALA THR PHE SEQRES 5 B 257 ARG ARG LEU ASP ILE LYS ARG ILE THR GLU VAL SER GLY SEQRES 6 B 257 SER ARG HIS LEU CYS ALA LYS SER LEU LEU PRO THR PHE SEQRES 7 B 257 VAL SER ARG MET VAL ARG LEU MET GLU ILE THR SER GLU SEQRES 8 B 257 ASP THR PHE TYR ASP LEU GLY CYS GLY ASN GLY SER ILE SEQRES 9 B 257 LEU PHE GLN VAL ALA PHE LEU THR GLY ALA ARG CYS VAL SEQRES 10 B 257 GLY ILE GLU ILE SER GLU HIS ASN ALA LYS VAL ALA LYS SEQRES 11 B 257 LYS ALA TRP GLU VAL ILE ARG PRO GLU LEU GLU GLY SER SEQRES 12 B 257 SER GLY ARG SER MET SER GLU VAL ASN ILE ILE THR SER SEQRES 13 B 257 ASP MET THR LYS ILE LEU ALA ASP GLU ARG LEU PHE GLU SEQRES 14 B 257 SER GLU ARG GLY LYS THR VAL ILE LEU LEU SER ASN LEU SEQRES 15 B 257 LEU PHE PRO LYS SER LEU THR HIS TYR LEU SER GLU ARG SEQRES 16 B 257 PHE ARG ARG VAL PRO SER GLY THR ARG ILE LEU CYS PHE SEQRES 17 B 257 ASP ASP LEU TYR PRO HIS SER ARG SER VAL ALA ALA ILE SEQRES 18 B 257 ARG ASP PRO GLU ALA PHE ARG LEU PHE ALA MET THR ASP SEQRES 19 B 257 TYR ARG TRP GLN GLU CYS SER VAL GLU TRP CYS THR ARG SEQRES 20 B 257 ASP GLY PRO PHE PHE ILE HIS ARG ARG ARG HET SAH A 301 45 HET ZN A 302 1 HET CA A 303 1 HET SAH B 301 45 HET ACT B 302 7 HET ZN B 303 1 HET CA B 304 1 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM ACT ACETATE ION FORMUL 3 SAH 2(C14 H20 N6 O5 S) FORMUL 4 ZN 2(ZN 2+) FORMUL 5 CA 2(CA 2+) FORMUL 7 ACT C2 H3 O2 1- FORMUL 10 HOH *353(H2 O) HELIX 1 AA1 HIS A 78 LEU A 93 1 16 HELIX 2 AA2 SER A 104 CYS A 108 5 5 HELIX 3 AA3 LEU A 113 MET A 124 1 12 HELIX 4 AA4 GLY A 140 GLY A 151 1 12 HELIX 5 AA5 SER A 160 GLY A 183 1 24 HELIX 6 AA6 ASP A 195 ALA A 201 1 7 HELIX 7 AA7 PHE A 206 ARG A 210 5 5 HELIX 8 AA8 PRO A 223 PHE A 234 1 12 HELIX 9 AA9 ARG A 235 VAL A 237 5 3 HELIX 10 AB1 VAL A 256 ASP A 261 1 6 HELIX 11 AB2 ASP A 261 LEU A 267 1 7 HELIX 12 AB3 HIS B 78 LEU B 93 1 16 HELIX 13 AB4 LEU B 113 MET B 124 1 12 HELIX 14 AB5 GLY B 140 GLY B 151 1 12 HELIX 15 AB6 SER B 160 GLY B 183 1 24 HELIX 16 AB7 ASP B 195 ALA B 201 1 7 HELIX 17 AB8 PHE B 206 ARG B 210 5 5 HELIX 18 AB9 PRO B 223 ARG B 235 1 13 HELIX 19 AC1 VAL B 256 ASP B 261 1 6 HELIX 20 AC2 ASP B 261 LEU B 267 1 7 SHEET 1 AA1 7 VAL A 189 THR A 193 0 SHEET 2 AA1 7 ARG A 153 GLU A 158 1 N GLY A 156 O ILE A 192 SHEET 3 AA1 7 THR A 131 LEU A 135 1 N PHE A 132 O VAL A 155 SHEET 4 AA1 7 THR A 213 LEU A 217 1 O VAL A 214 N TYR A 133 SHEET 5 AA1 7 ARG A 242 CYS A 245 1 O ARG A 242 N ILE A 215 SHEET 6 AA1 7 GLY A 287 ARG A 294 -1 O HIS A 292 N ILE A 243 SHEET 7 AA1 7 PHE A 268 TRP A 275 -1 N TRP A 275 O GLY A 287 SHEET 1 AA2 7 VAL B 189 THR B 193 0 SHEET 2 AA2 7 ARG B 153 GLU B 158 1 N GLY B 156 O ILE B 192 SHEET 3 AA2 7 THR B 131 LEU B 135 1 N PHE B 132 O VAL B 155 SHEET 4 AA2 7 THR B 213 LEU B 217 1 O VAL B 214 N TYR B 133 SHEET 5 AA2 7 ARG B 242 CYS B 245 1 O LEU B 244 N ILE B 215 SHEET 6 AA2 7 GLY B 287 ARG B 294 -1 O HIS B 292 N ILE B 243 SHEET 7 AA2 7 PHE B 268 TRP B 275 -1 N TRP B 275 O GLY B 287 LINK SG CYS A 69 ZN ZN A 302 1555 1555 2.38 LINK SG CYS A 72 ZN ZN A 302 1555 1555 2.31 LINK SG CYS A 77 ZN ZN A 302 1555 1555 2.30 LINK SG CYS A 79 ZN ZN A 302 1555 1555 2.33 LINK OE2 GLU A 207 CA CA A 303 1555 1555 2.35 LINK OE1 GLU A 207 CA CA B 304 1555 4445 2.31 LINK O ARG A 236 CA CA A 303 1555 1555 2.27 LINK CA CA A 303 O HOH A 473 1555 1555 2.39 LINK CA CA A 303 OE1 GLU B 207 4545 1555 2.32 LINK CA CA A 303 O ACT B 302 1555 4445 2.27 LINK CA CA A 303 O HOH B 535 1555 4445 2.34 LINK SG CYS B 69 ZN ZN B 303 1555 1555 2.42 LINK SG CYS B 72 ZN ZN B 303 1555 1555 2.38 LINK SG CYS B 77 ZN ZN B 303 1555 1555 2.34 LINK SG CYS B 79 ZN ZN B 303 1555 1555 2.37 LINK OE2 GLU B 207 CA CA B 304 1555 1555 2.44 LINK O ARG B 236 CA CA B 304 1555 1555 2.27 LINK O ACT B 302 CA CA B 304 1555 1555 2.40 LINK OXT ACT B 302 CA CA B 304 1555 1555 2.99 LINK CA CA B 304 O HOH B 467 1555 1555 2.40 LINK CA CA B 304 O HOH B 533 1555 1555 2.41 CRYST1 41.934 81.625 170.115 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023847 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012251 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005878 0.00000