HEADER TRANSCRIPTION 21-DEC-22 8FKC TITLE CRYSTAL STRUCTURE OF PPARGAMMA LIGAND-BINDING DOMAIN IN COMPLEX WITH TITLE 2 N-COR PEPTIDE AND INVERSE AGONIST SR33544 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PPAR-GAMMA,NUCLEAR RECEPTOR SUBFAMILY 1 GROUP C MEMBER 3; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: NUCLEAR RECEPTOR COREPRESSOR 1; COMPND 8 CHAIN: D; COMPND 9 SYNONYM: N-COR,N-COR1; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PPARG, NR1C3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: NCOR1, KIAA1047; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NUCLEAR RECEPTORS, TZDS, DRUG DESIGN, THERAPEUTIC TARGETS, KEYWDS 2 TRANSCRIPTION, TRANSCRIPTION-AGONIST COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR B.S.MACTAVISH,D.J.KOJETIN REVDAT 1 17-APR-24 8FKC 0 JRNL AUTH B.S.MACTAVISH,D.J.KOJETIN JRNL TITL CRYSTAL STRUCTURE OF PPARGAMMA LIGAND-BINDING DOMAIN IN JRNL TITL 2 COMPLEX WITH N-COR PEPTIDE AND SR33544 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1-4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.88 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 60515 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 3048 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.8800 - 3.9700 1.00 2901 135 0.1887 0.1790 REMARK 3 2 3.9700 - 3.1500 1.00 2724 130 0.1673 0.1742 REMARK 3 3 3.1500 - 2.7500 1.00 2677 146 0.1890 0.2101 REMARK 3 4 2.7500 - 2.5000 1.00 2626 166 0.1778 0.1958 REMARK 3 5 2.5000 - 2.3200 1.00 2635 147 0.1742 0.1811 REMARK 3 6 2.3200 - 2.1900 1.00 2599 161 0.1688 0.1868 REMARK 3 7 2.1900 - 2.0800 1.00 2599 158 0.1893 0.2035 REMARK 3 8 2.0800 - 1.9900 1.00 2607 128 0.1816 0.1908 REMARK 3 9 1.9900 - 1.9100 1.00 2640 110 0.1773 0.2198 REMARK 3 10 1.9100 - 1.8400 1.00 2627 124 0.1842 0.1990 REMARK 3 11 1.8400 - 1.7900 1.00 2581 142 0.1982 0.2263 REMARK 3 12 1.7900 - 1.7300 1.00 2583 148 0.2323 0.2589 REMARK 3 13 1.7300 - 1.6900 1.00 2563 133 0.2467 0.2815 REMARK 3 14 1.6900 - 1.6500 1.00 2605 135 0.2006 0.2170 REMARK 3 15 1.6500 - 1.6100 1.00 2577 133 0.1964 0.2096 REMARK 3 16 1.6100 - 1.5800 1.00 2576 140 0.1782 0.1809 REMARK 3 17 1.5800 - 1.5400 1.00 2581 129 0.1827 0.2078 REMARK 3 18 1.5400 - 1.5200 1.00 2553 131 0.1846 0.2189 REMARK 3 19 1.5200 - 1.4900 1.00 2593 136 0.1951 0.2205 REMARK 3 20 1.4900 - 1.4600 1.00 2566 131 0.2180 0.2409 REMARK 3 21 1.4600 - 1.4400 1.00 2574 127 0.2645 0.3133 REMARK 3 22 1.4400 - 1.4200 0.98 2480 158 0.3145 0.3340 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.173 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.627 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 2251 REMARK 3 ANGLE : 1.175 3036 REMARK 3 CHIRALITY : 0.086 352 REMARK 3 PLANARITY : 0.011 386 REMARK 3 DIHEDRAL : 13.310 871 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 202 THROUGH 225 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.1005 30.7817 10.8703 REMARK 3 T TENSOR REMARK 3 T11: 0.2103 T22: 0.1680 REMARK 3 T33: 0.1984 T12: 0.0377 REMARK 3 T13: -0.0306 T23: -0.0575 REMARK 3 L TENSOR REMARK 3 L11: 7.9284 L22: 5.3931 REMARK 3 L33: 4.8681 L12: 4.3138 REMARK 3 L13: -1.7687 L23: -2.3066 REMARK 3 S TENSOR REMARK 3 S11: -0.0764 S12: -0.0689 S13: 0.4856 REMARK 3 S21: -0.1149 S22: -0.0442 S23: 0.0014 REMARK 3 S31: -0.3298 S32: 0.1094 S33: 0.0873 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 226 THROUGH 246 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.8994 13.5865 28.4663 REMARK 3 T TENSOR REMARK 3 T11: 0.5108 T22: 0.2723 REMARK 3 T33: 0.2139 T12: -0.0192 REMARK 3 T13: 0.0462 T23: -0.0359 REMARK 3 L TENSOR REMARK 3 L11: 1.8378 L22: 3.6885 REMARK 3 L33: 6.3645 L12: -0.9701 REMARK 3 L13: 1.0289 L23: -1.8116 REMARK 3 S TENSOR REMARK 3 S11: -0.2809 S12: -0.3735 S13: -0.1128 REMARK 3 S21: 1.0374 S22: -0.0721 S23: -0.1218 REMARK 3 S31: 0.6482 S32: -0.3196 S33: 0.1306 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 247 THROUGH 333 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.1220 10.9617 14.3358 REMARK 3 T TENSOR REMARK 3 T11: 0.1272 T22: 0.2453 REMARK 3 T33: 0.2151 T12: 0.0060 REMARK 3 T13: 0.0084 T23: -0.0142 REMARK 3 L TENSOR REMARK 3 L11: 1.1648 L22: 2.5682 REMARK 3 L33: 1.2780 L12: -0.5623 REMARK 3 L13: 0.4750 L23: -1.0869 REMARK 3 S TENSOR REMARK 3 S11: 0.0262 S12: -0.1445 S13: -0.1037 REMARK 3 S21: 0.0635 S22: 0.1230 S23: 0.4100 REMARK 3 S31: -0.0050 S32: -0.3203 S33: -0.1363 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 334 THROUGH 377 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.1092 -0.4939 19.3486 REMARK 3 T TENSOR REMARK 3 T11: 0.1513 T22: 0.1802 REMARK 3 T33: 0.1674 T12: 0.0093 REMARK 3 T13: 0.0072 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 4.0474 L22: 4.8894 REMARK 3 L33: 2.8269 L12: 2.3423 REMARK 3 L13: -0.1752 L23: -2.1775 REMARK 3 S TENSOR REMARK 3 S11: -0.0569 S12: -0.1773 S13: -0.1162 REMARK 3 S21: -0.0563 S22: 0.0398 S23: 0.0786 REMARK 3 S31: 0.1516 S32: -0.2112 S33: 0.0699 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 378 THROUGH 430 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.7448 20.8716 4.6127 REMARK 3 T TENSOR REMARK 3 T11: 0.1743 T22: 0.1731 REMARK 3 T33: 0.1416 T12: 0.0277 REMARK 3 T13: 0.0204 T23: -0.0210 REMARK 3 L TENSOR REMARK 3 L11: 4.1998 L22: 1.7844 REMARK 3 L33: 2.6366 L12: 0.2913 REMARK 3 L13: 1.7290 L23: 0.2744 REMARK 3 S TENSOR REMARK 3 S11: 0.0736 S12: 0.3143 S13: -0.0103 REMARK 3 S21: -0.1667 S22: -0.0271 S23: -0.0687 REMARK 3 S31: -0.0660 S32: 0.1035 S33: -0.0470 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 431 THROUGH 477 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.7937 0.0001 10.8591 REMARK 3 T TENSOR REMARK 3 T11: 0.2079 T22: 0.2413 REMARK 3 T33: 0.2826 T12: -0.0419 REMARK 3 T13: 0.0125 T23: -0.0123 REMARK 3 L TENSOR REMARK 3 L11: 1.0907 L22: 1.2454 REMARK 3 L33: 0.9405 L12: 0.4356 REMARK 3 L13: -0.3512 L23: -0.2163 REMARK 3 S TENSOR REMARK 3 S11: -0.1159 S12: 0.0925 S13: -0.3491 REMARK 3 S21: -0.0846 S22: 0.0730 S23: 0.1602 REMARK 3 S31: 0.2641 S32: -0.2995 S33: 0.0096 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 2260 THROUGH 2272 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.4603 18.3178 6.7380 REMARK 3 T TENSOR REMARK 3 T11: 0.2073 T22: 0.4322 REMARK 3 T33: 0.4703 T12: 0.0509 REMARK 3 T13: -0.0314 T23: -0.0650 REMARK 3 L TENSOR REMARK 3 L11: 8.5463 L22: 5.5456 REMARK 3 L33: 8.1911 L12: 0.7723 REMARK 3 L13: 0.4663 L23: -0.9016 REMARK 3 S TENSOR REMARK 3 S11: 0.4789 S12: 0.5411 S13: -0.3360 REMARK 3 S21: -0.2745 S22: -0.1470 S23: 1.4547 REMARK 3 S31: 0.4333 S32: -0.7616 S33: -0.2369 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8FKC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-DEC-22. REMARK 100 THE DEPOSITION ID IS D_1000270946. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-AUG-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979318 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60517 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.420 REMARK 200 RESOLUTION RANGE LOW (A) : 43.880 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 25.50 REMARK 200 R MERGE (I) : 0.03887 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 44.9800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.47 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 20.80 REMARK 200 R MERGE FOR SHELL (I) : 1.06500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.640 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM SULFATE, 0.1M MES, PH REMARK 280 6.5, 30% W/V, PEG 8000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.35950 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 31.02700 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 31.02700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.17975 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 31.02700 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 31.02700 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 120.53925 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 31.02700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 31.02700 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 40.17975 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 31.02700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 31.02700 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 120.53925 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 80.35950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 720 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 260 REMARK 465 LYS A 261 REMARK 465 ILE A 262 REMARK 465 LYS A 263 REMARK 465 PHE A 264 REMARK 465 LYS A 265 REMARK 465 HIS A 266 REMARK 465 ILE A 267 REMARK 465 THR A 268 REMARK 465 PRO A 269 REMARK 465 LEU A 270 REMARK 465 GLN A 271 REMARK 465 GLU A 272 REMARK 465 GLN A 273 REMARK 465 SER A 274 REMARK 465 LYS A 275 REMARK 465 ASP D 2256 REMARK 465 PRO D 2257 REMARK 465 ALA D 2258 REMARK 465 SER D 2259 REMARK 465 GLY D 2273 REMARK 465 SER D 2274 REMARK 465 PHE D 2275 REMARK 465 ASP D 2276 REMARK 465 ASP D 2277 REMARK 465 LYS D 2278 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 240 35.06 -90.51 REMARK 500 LEU A 393 49.44 -85.90 REMARK 500 LEU A 476 -159.11 -105.91 REMARK 500 REMARK 500 REMARK: NULL DBREF 8FKC A 203 477 UNP P37231 PPARG_HUMAN 231 505 DBREF 8FKC D 2256 2278 UNP O75376 NCOR1_HUMAN 2256 2278 SEQADV 8FKC GLY A 202 UNP P37231 EXPRESSION TAG SEQRES 1 A 276 GLY GLN LEU ASN PRO GLU SER ALA ASP LEU ARG ALA LEU SEQRES 2 A 276 ALA LYS HIS LEU TYR ASP SER TYR ILE LYS SER PHE PRO SEQRES 3 A 276 LEU THR LYS ALA LYS ALA ARG ALA ILE LEU THR GLY LYS SEQRES 4 A 276 THR THR ASP LYS SER PRO PHE VAL ILE TYR ASP MET ASN SEQRES 5 A 276 SER LEU MET MET GLY GLU ASP LYS ILE LYS PHE LYS HIS SEQRES 6 A 276 ILE THR PRO LEU GLN GLU GLN SER LYS GLU VAL ALA ILE SEQRES 7 A 276 ARG ILE PHE GLN GLY CYS GLN PHE ARG SER VAL GLU ALA SEQRES 8 A 276 VAL GLN GLU ILE THR GLU TYR ALA LYS SER ILE PRO GLY SEQRES 9 A 276 PHE VAL ASN LEU ASP LEU ASN ASP GLN VAL THR LEU LEU SEQRES 10 A 276 LYS TYR GLY VAL HIS GLU ILE ILE TYR THR MET LEU ALA SEQRES 11 A 276 SER LEU MET ASN LYS ASP GLY VAL LEU ILE SER GLU GLY SEQRES 12 A 276 GLN GLY PHE MET THR ARG GLU PHE LEU LYS SER LEU ARG SEQRES 13 A 276 LYS PRO PHE GLY ASP PHE MET GLU PRO LYS PHE GLU PHE SEQRES 14 A 276 ALA VAL LYS PHE ASN ALA LEU GLU LEU ASP ASP SER ASP SEQRES 15 A 276 LEU ALA ILE PHE ILE ALA VAL ILE ILE LEU SER GLY ASP SEQRES 16 A 276 ARG PRO GLY LEU LEU ASN VAL LYS PRO ILE GLU ASP ILE SEQRES 17 A 276 GLN ASP ASN LEU LEU GLN ALA LEU GLU LEU GLN LEU LYS SEQRES 18 A 276 LEU ASN HIS PRO GLU SER SER GLN LEU PHE ALA LYS LEU SEQRES 19 A 276 LEU GLN LYS MET THR ASP LEU ARG GLN ILE VAL THR GLU SEQRES 20 A 276 HIS VAL GLN LEU LEU GLN VAL ILE LYS LYS THR GLU THR SEQRES 21 A 276 ASP MET SER LEU HIS PRO LEU LEU GLN GLU ILE TYR LYS SEQRES 22 A 276 ASP LEU TYR SEQRES 1 D 23 ASP PRO ALA SER ASN LEU GLY LEU GLU ASP ILE ILE ARG SEQRES 2 D 23 LYS ALA LEU MET GLY SER PHE ASP ASP LYS HET Y5F A 501 20 HET EDO A 502 4 HETNAM Y5F 2-CHLORO-N-(5-CYANOPYRIDIN-3-YL)-5-NITROBENZAMIDE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 Y5F C13 H7 CL N4 O3 FORMUL 4 EDO C2 H6 O2 FORMUL 5 HOH *269(H2 O) HELIX 1 AA1 ASN A 205 PHE A 226 1 22 HELIX 2 AA2 THR A 229 THR A 238 1 10 HELIX 3 AA3 ASP A 251 GLY A 258 1 8 HELIX 4 AA4 VAL A 277 SER A 289 1 13 HELIX 5 AA5 SER A 289 SER A 302 1 14 HELIX 6 AA6 GLY A 305 LEU A 309 5 5 HELIX 7 AA7 ASP A 310 LEU A 333 1 24 HELIX 8 AA8 ARG A 350 LEU A 356 1 7 HELIX 9 AA9 PRO A 359 PHE A 363 5 5 HELIX 10 AB1 MET A 364 ALA A 376 1 13 HELIX 11 AB2 ASP A 380 LEU A 393 1 14 HELIX 12 AB3 ASN A 402 HIS A 425 1 24 HELIX 13 AB4 GLN A 430 THR A 459 1 30 HELIX 14 AB5 HIS A 466 ASP A 475 1 10 HELIX 15 AB6 LEU D 2261 MET D 2272 1 12 SHEET 1 AA1 4 PHE A 247 ILE A 249 0 SHEET 2 AA1 4 GLY A 346 THR A 349 1 O PHE A 347 N ILE A 249 SHEET 3 AA1 4 GLY A 338 ILE A 341 -1 N VAL A 339 O MET A 348 SHEET 4 AA1 4 MET A 334 ASN A 335 -1 N ASN A 335 O GLY A 338 LINK SG CYS A 285 C19 Y5F A 501 1555 1555 1.77 CISPEP 1 LYS A 358 PRO A 359 0 5.71 CRYST1 62.054 62.054 160.719 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016115 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016115 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006222 0.00000