HEADER TRANSCRIPTION 21-DEC-22 8FKF TITLE CRYSTAL STRUCTURE OF PPARGAMMA LIGAND-BINDING DOMAIN IN COMPLEX WITH TITLE 2 N-COR PEPTIDE AND INVERSE AGONIST SR36706 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PPAR-GAMMA,NUCLEAR RECEPTOR SUBFAMILY 1 GROUP C MEMBER 3; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: NUCLEAR RECEPTOR COREPRESSOR 1; COMPND 8 CHAIN: D; COMPND 9 SYNONYM: N-COR,N-COR1; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PPARG, NR1C3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: NCOR1, KIAA1047; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NUCLEAR RECEPTORS, TZDS, DRUG DESIGN, THERAPEUTIC TARGETS, KEYWDS 2 TRANSCRIPTION, TRANSCRIPTION-AGONIST COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR B.S.MACTAVISH,D.J.KOJETIN REVDAT 1 17-APR-24 8FKF 0 JRNL AUTH B.S.MACTAVISH,D.J.KOJETIN JRNL TITL CRYSTAL STRUCTURE OF PPARGAMMA LIGAND-BINDING DOMAIN IN JRNL TITL 2 COMPLEX WITH N-COR PEPTIDE AND SR36706 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1-4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.15 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 28620 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.730 REMARK 3 FREE R VALUE TEST SET COUNT : 1354 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.1500 - 3.9300 1.00 2955 144 0.1749 0.2047 REMARK 3 2 3.9300 - 3.1200 1.00 2771 146 0.1651 0.2151 REMARK 3 3 3.1200 - 2.7300 1.00 2756 127 0.1915 0.2166 REMARK 3 4 2.7300 - 2.4800 1.00 2707 132 0.1744 0.2014 REMARK 3 5 2.4800 - 2.3000 1.00 2717 117 0.1773 0.2206 REMARK 3 6 2.3000 - 2.1600 1.00 2682 158 0.1843 0.2308 REMARK 3 7 2.1600 - 2.0600 1.00 2678 140 0.1750 0.2180 REMARK 3 8 2.0600 - 1.9700 1.00 2676 130 0.1741 0.1897 REMARK 3 9 1.9700 - 1.8900 1.00 2665 126 0.2248 0.2271 REMARK 3 10 1.8900 - 1.8200 1.00 2657 134 0.3071 0.3692 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.226 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.981 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.75 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2290 REMARK 3 ANGLE : 1.033 3078 REMARK 3 CHIRALITY : 0.061 355 REMARK 3 PLANARITY : 0.008 390 REMARK 3 DIHEDRAL : 12.581 885 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 202 THROUGH 225 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.8360 30.7064 10.8484 REMARK 3 T TENSOR REMARK 3 T11: 0.2056 T22: 0.1604 REMARK 3 T33: 0.1673 T12: 0.0487 REMARK 3 T13: -0.0416 T23: -0.0517 REMARK 3 L TENSOR REMARK 3 L11: 8.1128 L22: 7.0430 REMARK 3 L33: 7.7368 L12: 6.4275 REMARK 3 L13: -4.5907 L23: -4.7875 REMARK 3 S TENSOR REMARK 3 S11: -0.0269 S12: -0.1581 S13: 0.3351 REMARK 3 S21: -0.0563 S22: -0.0590 S23: -0.0279 REMARK 3 S31: -0.3807 S32: 0.1631 S33: 0.0406 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 226 THROUGH 251 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.4013 9.6900 29.2563 REMARK 3 T TENSOR REMARK 3 T11: 0.4464 T22: 0.3139 REMARK 3 T33: 0.2146 T12: 0.0202 REMARK 3 T13: 0.0308 T23: 0.0100 REMARK 3 L TENSOR REMARK 3 L11: 0.0496 L22: 3.6356 REMARK 3 L33: 1.3024 L12: 0.3454 REMARK 3 L13: -0.1979 L23: -2.1838 REMARK 3 S TENSOR REMARK 3 S11: -0.0108 S12: -0.2028 S13: -0.0443 REMARK 3 S21: 1.0524 S22: 0.2011 S23: 0.0812 REMARK 3 S31: -0.5901 S32: -0.3431 S33: -0.2208 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 252 THROUGH 276 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.9999 -4.1669 32.1144 REMARK 3 T TENSOR REMARK 3 T11: 0.3093 T22: 0.5737 REMARK 3 T33: 0.4156 T12: -0.0290 REMARK 3 T13: 0.1294 T23: 0.0986 REMARK 3 L TENSOR REMARK 3 L11: 6.6089 L22: 6.0250 REMARK 3 L33: 5.2460 L12: -1.3881 REMARK 3 L13: 2.8814 L23: -2.3596 REMARK 3 S TENSOR REMARK 3 S11: 0.0488 S12: -1.3704 S13: -0.2179 REMARK 3 S21: 0.3288 S22: 0.1059 S23: 0.6324 REMARK 3 S31: -0.1264 S32: -0.8662 S33: -0.2920 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 277 THROUGH 364 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.0941 8.9286 14.1517 REMARK 3 T TENSOR REMARK 3 T11: 0.1129 T22: 0.2294 REMARK 3 T33: 0.2122 T12: 0.0094 REMARK 3 T13: -0.0111 T23: -0.0098 REMARK 3 L TENSOR REMARK 3 L11: 0.6756 L22: 2.8167 REMARK 3 L33: 1.6536 L12: -0.4857 REMARK 3 L13: 0.2353 L23: -1.4650 REMARK 3 S TENSOR REMARK 3 S11: 0.0041 S12: -0.1182 S13: -0.0958 REMARK 3 S21: -0.0265 S22: 0.0795 S23: 0.4315 REMARK 3 S31: 0.0495 S32: -0.3063 S33: -0.0648 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 365 THROUGH 430 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.6034 17.3076 6.3957 REMARK 3 T TENSOR REMARK 3 T11: 0.1143 T22: 0.1545 REMARK 3 T33: 0.0845 T12: 0.0322 REMARK 3 T13: 0.0023 T23: -0.0312 REMARK 3 L TENSOR REMARK 3 L11: 1.5651 L22: 2.5623 REMARK 3 L33: 1.1984 L12: 0.6654 REMARK 3 L13: -0.2663 L23: -0.0021 REMARK 3 S TENSOR REMARK 3 S11: 0.0230 S12: 0.1116 S13: -0.0408 REMARK 3 S21: -0.2059 S22: -0.0688 S23: -0.0736 REMARK 3 S31: -0.0347 S32: -0.0373 S33: 0.0288 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 431 THROUGH 477 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.8727 -0.1457 10.9878 REMARK 3 T TENSOR REMARK 3 T11: 0.2327 T22: 0.2975 REMARK 3 T33: 0.3271 T12: -0.0417 REMARK 3 T13: 0.0133 T23: -0.0217 REMARK 3 L TENSOR REMARK 3 L11: 1.9045 L22: 1.5861 REMARK 3 L33: 3.0922 L12: 0.7972 REMARK 3 L13: -1.4707 L23: -0.9325 REMARK 3 S TENSOR REMARK 3 S11: -0.2351 S12: 0.1415 S13: -0.4964 REMARK 3 S21: -0.1847 S22: 0.0840 S23: 0.0945 REMARK 3 S31: 0.4656 S32: -0.5311 S33: 0.1151 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 2260 THROUGH 2272 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.3297 17.9368 6.5613 REMARK 3 T TENSOR REMARK 3 T11: 0.2267 T22: 0.4786 REMARK 3 T33: 0.5210 T12: 0.0387 REMARK 3 T13: -0.0995 T23: -0.1225 REMARK 3 L TENSOR REMARK 3 L11: 7.3155 L22: 5.4429 REMARK 3 L33: 7.9390 L12: 2.1323 REMARK 3 L13: -1.1005 L23: -6.3166 REMARK 3 S TENSOR REMARK 3 S11: 0.2750 S12: 0.5255 S13: -0.4007 REMARK 3 S21: -0.7680 S22: 0.0016 S23: 1.4491 REMARK 3 S31: 0.4400 S32: -1.0015 S33: -0.3607 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8FKF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB. REMARK 100 THE DEPOSITION ID IS D_1000270949. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-AUG-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28621 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.820 REMARK 200 RESOLUTION RANGE LOW (A) : 42.150 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 25.10 REMARK 200 R MERGE (I) : 0.05594 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 39.8200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.82 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 26.20 REMARK 200 R MERGE FOR SHELL (I) : 0.46070 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.350 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM SULFATE, 0.1M MES, PH REMARK 280 6.5, 30% W/V, PEG 8000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.54200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 30.88250 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 30.88250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.27100 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 30.88250 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 30.88250 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 120.81300 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 30.88250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 30.88250 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 40.27100 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 30.88250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 30.88250 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 120.81300 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 80.54200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 687 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 263 REMARK 465 PHE A 264 REMARK 465 LYS A 265 REMARK 465 HIS A 266 REMARK 465 ILE A 267 REMARK 465 THR A 268 REMARK 465 PRO A 269 REMARK 465 LEU A 270 REMARK 465 GLN A 271 REMARK 465 GLU A 272 REMARK 465 GLN A 273 REMARK 465 SER A 274 REMARK 465 LYS A 275 REMARK 465 ASP D 2256 REMARK 465 PRO D 2257 REMARK 465 ALA D 2258 REMARK 465 GLY D 2273 REMARK 465 SER D 2274 REMARK 465 PHE D 2275 REMARK 465 ASP D 2276 REMARK 465 ASP D 2277 REMARK 465 LYS D 2278 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 476 -157.77 -107.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 814 DISTANCE = 5.87 ANGSTROMS DBREF 8FKF A 203 477 UNP P37231 PPARG_HUMAN 231 505 DBREF 8FKF D 2256 2278 UNP O75376 NCOR1_HUMAN 2256 2278 SEQADV 8FKF GLY A 202 UNP P37231 EXPRESSION TAG SEQRES 1 A 276 GLY GLN LEU ASN PRO GLU SER ALA ASP LEU ARG ALA LEU SEQRES 2 A 276 ALA LYS HIS LEU TYR ASP SER TYR ILE LYS SER PHE PRO SEQRES 3 A 276 LEU THR LYS ALA LYS ALA ARG ALA ILE LEU THR GLY LYS SEQRES 4 A 276 THR THR ASP LYS SER PRO PHE VAL ILE TYR ASP MET ASN SEQRES 5 A 276 SER LEU MET MET GLY GLU ASP LYS ILE LYS PHE LYS HIS SEQRES 6 A 276 ILE THR PRO LEU GLN GLU GLN SER LYS GLU VAL ALA ILE SEQRES 7 A 276 ARG ILE PHE GLN GLY CYS GLN PHE ARG SER VAL GLU ALA SEQRES 8 A 276 VAL GLN GLU ILE THR GLU TYR ALA LYS SER ILE PRO GLY SEQRES 9 A 276 PHE VAL ASN LEU ASP LEU ASN ASP GLN VAL THR LEU LEU SEQRES 10 A 276 LYS TYR GLY VAL HIS GLU ILE ILE TYR THR MET LEU ALA SEQRES 11 A 276 SER LEU MET ASN LYS ASP GLY VAL LEU ILE SER GLU GLY SEQRES 12 A 276 GLN GLY PHE MET THR ARG GLU PHE LEU LYS SER LEU ARG SEQRES 13 A 276 LYS PRO PHE GLY ASP PHE MET GLU PRO LYS PHE GLU PHE SEQRES 14 A 276 ALA VAL LYS PHE ASN ALA LEU GLU LEU ASP ASP SER ASP SEQRES 15 A 276 LEU ALA ILE PHE ILE ALA VAL ILE ILE LEU SER GLY ASP SEQRES 16 A 276 ARG PRO GLY LEU LEU ASN VAL LYS PRO ILE GLU ASP ILE SEQRES 17 A 276 GLN ASP ASN LEU LEU GLN ALA LEU GLU LEU GLN LEU LYS SEQRES 18 A 276 LEU ASN HIS PRO GLU SER SER GLN LEU PHE ALA LYS LEU SEQRES 19 A 276 LEU GLN LYS MET THR ASP LEU ARG GLN ILE VAL THR GLU SEQRES 20 A 276 HIS VAL GLN LEU LEU GLN VAL ILE LYS LYS THR GLU THR SEQRES 21 A 276 ASP MET SER LEU HIS PRO LEU LEU GLN GLU ILE TYR LYS SEQRES 22 A 276 ASP LEU TYR SEQRES 1 D 23 ASP PRO ALA SER ASN LEU GLY LEU GLU ASP ILE ILE ARG SEQRES 2 D 23 LYS ALA LEU MET GLY SER PHE ASP ASP LYS HET Y5X A 501 19 HET EDO A 502 4 HET EDO A 503 4 HET EDO A 504 4 HET EDO A 505 4 HET GOL A 506 6 HETNAM Y5X 2-CHLORO-N-(5-FLUOROPYRIDIN-3-YL)-5-NITROBENZAMIDE HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 Y5X C12 H7 CL F N3 O3 FORMUL 4 EDO 4(C2 H6 O2) FORMUL 8 GOL C3 H8 O3 FORMUL 9 HOH *219(H2 O) HELIX 1 AA1 ASN A 205 PHE A 226 1 22 HELIX 2 AA2 THR A 229 THR A 238 1 10 HELIX 3 AA3 ASP A 251 GLY A 258 1 8 HELIX 4 AA4 GLU A 259 ILE A 262 5 4 HELIX 5 AA5 VAL A 277 SER A 289 1 13 HELIX 6 AA6 SER A 289 SER A 302 1 14 HELIX 7 AA7 GLY A 305 LEU A 309 5 5 HELIX 8 AA8 ASP A 310 LEU A 333 1 24 HELIX 9 AA9 ARG A 350 LEU A 356 1 7 HELIX 10 AB1 PRO A 359 PHE A 363 5 5 HELIX 11 AB2 MET A 364 ALA A 376 1 13 HELIX 12 AB3 ASP A 380 LEU A 393 1 14 HELIX 13 AB4 ASN A 402 HIS A 425 1 24 HELIX 14 AB5 GLN A 430 THR A 459 1 30 HELIX 15 AB6 HIS A 466 ASP A 475 1 10 HELIX 16 AB7 ASN D 2260 MET D 2272 1 13 SHEET 1 AA1 4 PHE A 247 ILE A 249 0 SHEET 2 AA1 4 GLY A 346 THR A 349 1 O PHE A 347 N ILE A 249 SHEET 3 AA1 4 GLY A 338 ILE A 341 -1 N VAL A 339 O MET A 348 SHEET 4 AA1 4 MET A 334 ASN A 335 -1 N ASN A 335 O GLY A 338 LINK SG CYS A 285 C19 Y5X A 501 1555 1555 1.77 CISPEP 1 LYS A 358 PRO A 359 0 2.03 CRYST1 61.765 61.765 161.084 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016190 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016190 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006208 0.00000