HEADER VIRAL PROTEIN/INHIBITOR 22-DEC-22 8FM0 TITLE HIV-1 GP120 COMPLEX WITH CJF-III-214 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENVELOPE GLYCOPROTEIN GP120; COMPND 3 CHAIN: B, A, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HIV-1 06TG.HT008; SOURCE 3 ORGANISM_TAXID: 587638; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS RETROVIRUS, GP120, ENTRY INHIBITOR, STRUCTURE-BASED DRUG DESIGN, KEYWDS 2 SMALL MOLECULE, ANTIRETROVIRAL THERAPY, VIRAL PROTEIN-INHIBITOR KEYWDS 3 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Z.GONG,W.A.HENDRICKSON REVDAT 1 05-APR-23 8FM0 0 JRNL AUTH C.J.FRITSCHI,S.ANANG,Z.GONG,M.MOHAMMADI,J.RICHARD, JRNL AUTH 2 C.BOURASSA,K.T.SEVERINO,H.RICHTER,D.YANG,H.C.CHEN,T.J.CHIU, JRNL AUTH 3 M.S.SEAMAN,N.MADANI,C.ABRAMS,A.FINZI,W.A.HENDRICKSON, JRNL AUTH 4 J.G.SODROSKI,A.B.SMITH III JRNL TITL INDOLINE CD4-MIMETIC COMPOUNDS MEDIATE POTENT AND BROAD JRNL TITL 2 HIV-1 INHIBITION AND SENSITIZATION TO ANTIBODY-DEPENDENT JRNL TITL 3 CELLULAR CYTOTOXICITY. JRNL REF PROC.NATL.ACAD.SCI.USA V. 120 73120 2023 JRNL REFN ESSN 1091-6490 JRNL PMID 36961924 JRNL DOI 10.1073/PNAS.2222073120 REMARK 2 REMARK 2 RESOLUTION. 2.08 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20RC3_4406 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.08 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 70.8 REMARK 3 NUMBER OF REFLECTIONS : 72731 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.254 REMARK 3 R VALUE (WORKING SET) : 0.253 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.750 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.7900 - 5.0100 1.00 7512 212 0.2125 0.2030 REMARK 3 2 5.0100 - 3.9800 1.00 7236 205 0.1988 0.2206 REMARK 3 3 3.9800 - 3.4800 1.00 7199 204 0.2323 0.2572 REMARK 3 4 3.4800 - 3.1600 1.00 7150 202 0.2722 0.3231 REMARK 3 5 3.1600 - 2.9300 1.00 7112 201 0.2851 0.2983 REMARK 3 6 2.9300 - 2.7600 1.00 7069 199 0.3014 0.3693 REMARK 3 7 2.7600 - 2.6200 0.98 7034 199 0.3127 0.3318 REMARK 3 8 2.6200 - 2.5100 0.92 6489 184 0.3310 0.3414 REMARK 3 9 2.5100 - 2.4100 0.78 5509 156 0.3277 0.3493 REMARK 3 10 2.4100 - 2.3300 0.52 3657 104 0.3320 0.3065 REMARK 3 11 2.3300 - 2.2500 0.33 2300 65 0.3085 0.3405 REMARK 3 12 2.2500 - 2.1900 0.22 1539 43 0.3185 0.4308 REMARK 3 13 2.1900 - 2.1300 0.10 697 20 0.3032 0.3543 REMARK 3 14 2.1300 - 2.0800 0.03 228 6 0.3395 0.3399 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.301 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 37.110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.95 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 11240 REMARK 3 ANGLE : 1.510 15262 REMARK 3 CHIRALITY : 0.099 1774 REMARK 3 PLANARITY : 0.022 1942 REMARK 3 DIHEDRAL : 16.069 1588 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -20.2811 12.1364 -33.3631 REMARK 3 T TENSOR REMARK 3 T11: 0.1168 T22: 0.2074 REMARK 3 T33: 0.1305 T12: 0.0484 REMARK 3 T13: 0.0084 T23: -0.0272 REMARK 3 L TENSOR REMARK 3 L11: 0.0671 L22: 0.2600 REMARK 3 L33: 0.1816 L12: 0.0580 REMARK 3 L13: 0.0951 L23: 0.0332 REMARK 3 S TENSOR REMARK 3 S11: -0.0018 S12: 0.0278 S13: -0.0092 REMARK 3 S21: 0.0168 S22: 0.0277 S23: 0.0281 REMARK 3 S31: 0.0081 S32: 0.0021 S33: -0.0119 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8FM0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-DEC-22. REMARK 100 THE DEPOSITION ID IS D_1000270993. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-DEC-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : STARANISO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 501236 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.080 REMARK 200 RESOLUTION RANGE LOW (A) : 48.790 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.13500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.08 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.17600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14% TO 16% (W/V) PEG 1500, 0.1 M REMARK 280 CALCIUM CHLORIDE, 0.1 M IMIDAZOLE PH 6.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.89800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 97.58150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 60.44400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 97.58150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.89800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 60.44400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL B 44 REMARK 465 TRP B 45 REMARK 465 LYS B 46 REMARK 465 GLU B 47 REMARK 465 ALA B 48 REMARK 465 ASN B 317 REMARK 465 GLY B 318 REMARK 465 GLY B 319 REMARK 465 SER B 320 REMARK 465 GLY B 321 REMARK 465 SER B 322 REMARK 465 GLY B 323 REMARK 465 GLY B 324 REMARK 465 GLY B 457A REMARK 465 GLY B 457B REMARK 465 GLN B 457C REMARK 465 SER B 457D REMARK 465 ASN B 457E REMARK 465 GLU B 457F REMARK 465 THR B 457G REMARK 465 ASN B 457H REMARK 465 ILE B 491 REMARK 465 LYS B 492 REMARK 465 VAL A 44 REMARK 465 TRP A 45 REMARK 465 LYS A 46 REMARK 465 GLU A 47 REMARK 465 ALA A 48 REMARK 465 ASN A 317 REMARK 465 GLY A 318 REMARK 465 GLY A 319 REMARK 465 SER A 320 REMARK 465 GLY A 321 REMARK 465 SER A 322 REMARK 465 GLY A 323 REMARK 465 GLY A 324 REMARK 465 GLY A 457A REMARK 465 GLY A 457B REMARK 465 GLN A 457C REMARK 465 SER A 457D REMARK 465 ASN A 457E REMARK 465 GLU A 457F REMARK 465 THR A 457G REMARK 465 ASN A 457H REMARK 465 ILE A 491 REMARK 465 LYS A 492 REMARK 465 VAL C 44 REMARK 465 TRP C 45 REMARK 465 LYS C 46 REMARK 465 GLU C 47 REMARK 465 ALA C 48 REMARK 465 ASN C 317 REMARK 465 GLY C 318 REMARK 465 GLY C 319 REMARK 465 SER C 320 REMARK 465 GLY C 321 REMARK 465 SER C 322 REMARK 465 GLY C 323 REMARK 465 GLY C 324 REMARK 465 GLY C 457A REMARK 465 GLY C 457B REMARK 465 GLN C 457C REMARK 465 SER C 457D REMARK 465 ASN C 457E REMARK 465 GLU C 457F REMARK 465 THR C 457G REMARK 465 ASN C 457H REMARK 465 ILE C 491 REMARK 465 LYS C 492 REMARK 465 VAL D 44 REMARK 465 TRP D 45 REMARK 465 LYS D 46 REMARK 465 GLU D 47 REMARK 465 ALA D 48 REMARK 465 ASN D 317 REMARK 465 GLY D 318 REMARK 465 GLY D 319 REMARK 465 SER D 320 REMARK 465 GLY D 321 REMARK 465 SER D 322 REMARK 465 GLY D 323 REMARK 465 GLY D 324 REMARK 465 GLY D 457A REMARK 465 GLY D 457B REMARK 465 GLN D 457C REMARK 465 SER D 457D REMARK 465 ASN D 457E REMARK 465 GLU D 457F REMARK 465 THR D 457G REMARK 465 ASN D 457H REMARK 465 ILE D 491 REMARK 465 LYS D 492 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY A 124 O HOH A 601 1.88 REMARK 500 O GLU D 267 O HOH D 601 1.89 REMARK 500 ND2 ASN D 448 O HOH D 602 1.97 REMARK 500 NZ LYS C 59 OD2 ASP D 211 2.03 REMARK 500 NE2 GLN A 422 O HOH A 602 2.08 REMARK 500 O HOH A 631 O HOH A 639 2.10 REMARK 500 ND2 ASN A 339 C2 NAG A 508 2.15 REMARK 500 O ASN D 67 OG1 THR D 71 2.16 REMARK 500 O ASN B 67 OG1 THR B 71 2.16 REMARK 500 O ASN A 67 OG1 THR A 71 2.16 REMARK 500 O ASN C 67 OG1 THR C 71 2.16 REMARK 500 O GLU D 490 O HOH D 603 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU B 442 ND2 ASN A 80 3444 1.58 REMARK 500 ND2 ASN A 94 O3 NAG D 506 3444 2.10 REMARK 500 OG SER B 356 OG SER D 356 3444 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 THR B 244 CB THR B 244 CG2 -0.211 REMARK 500 THR A 244 CB THR A 244 CG2 -0.211 REMARK 500 THR C 244 CB THR C 244 CG2 -0.211 REMARK 500 THR D 244 CB THR D 244 CG2 -0.211 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET B 84 CB - CG - SD ANGL. DEV. = -25.1 DEGREES REMARK 500 LEU B 122 CB - CG - CD1 ANGL. DEV. = 15.1 DEGREES REMARK 500 LEU B 122 CB - CG - CD2 ANGL. DEV. = -21.9 DEGREES REMARK 500 MET A 84 CB - CG - SD ANGL. DEV. = -25.2 DEGREES REMARK 500 LEU A 122 CB - CG - CD1 ANGL. DEV. = 15.1 DEGREES REMARK 500 LEU A 122 CB - CG - CD2 ANGL. DEV. = -21.9 DEGREES REMARK 500 MET C 84 CB - CG - SD ANGL. DEV. = -25.1 DEGREES REMARK 500 LEU C 122 CB - CG - CD1 ANGL. DEV. = 15.1 DEGREES REMARK 500 LEU C 122 CB - CG - CD2 ANGL. DEV. = -21.9 DEGREES REMARK 500 MET D 84 CB - CG - SD ANGL. DEV. = -25.1 DEGREES REMARK 500 LEU D 122 CB - CG - CD1 ANGL. DEV. = 15.1 DEGREES REMARK 500 LEU D 122 CB - CG - CD2 ANGL. DEV. = -21.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 57 37.08 -74.63 REMARK 500 ALA B 60 -68.93 -17.64 REMARK 500 ALA B 87 8.27 -63.07 REMARK 500 THR B 90 115.40 76.62 REMARK 500 LEU B 116 64.10 -118.27 REMARK 500 GLN B 258 -53.03 66.42 REMARK 500 GLU B 268 -99.24 -114.87 REMARK 500 ASN B 276 94.93 -165.94 REMARK 500 SER B 365 -72.19 -54.45 REMARK 500 ASN B 392 84.51 -173.24 REMARK 500 ARG B 396 -73.92 -109.70 REMARK 500 ASN B 397 52.94 -109.18 REMARK 500 ILE B 439 170.22 -56.56 REMARK 500 ASP A 57 37.08 -74.63 REMARK 500 ALA A 60 -68.93 -17.64 REMARK 500 ALA A 87 8.27 -63.07 REMARK 500 THR A 90 115.40 76.62 REMARK 500 LEU A 116 64.10 -118.27 REMARK 500 GLN A 258 -53.03 66.42 REMARK 500 GLU A 268 -99.24 -114.87 REMARK 500 ASN A 276 94.93 -165.94 REMARK 500 SER A 365 -72.19 -54.45 REMARK 500 ASN A 392 84.51 -173.24 REMARK 500 ARG A 396 -73.92 -109.70 REMARK 500 ASN A 397 52.94 -109.18 REMARK 500 ILE A 439 170.22 -56.56 REMARK 500 ASP C 57 37.08 -74.63 REMARK 500 ALA C 60 -68.93 -17.64 REMARK 500 ALA C 87 8.27 -63.07 REMARK 500 THR C 90 115.40 76.62 REMARK 500 LEU C 116 64.10 -118.27 REMARK 500 GLN C 258 -53.03 66.42 REMARK 500 GLU C 268 -99.24 -114.87 REMARK 500 ASN C 276 94.93 -165.94 REMARK 500 SER C 365 -72.19 -54.44 REMARK 500 ASN C 392 84.51 -173.24 REMARK 500 ARG C 396 -73.92 -109.70 REMARK 500 ASN C 397 52.94 -109.18 REMARK 500 ILE C 439 170.22 -56.56 REMARK 500 ASP D 57 37.08 -74.63 REMARK 500 ALA D 60 -68.93 -17.64 REMARK 500 ALA D 87 8.27 -63.07 REMARK 500 THR D 90 115.40 76.62 REMARK 500 LEU D 116 64.10 -118.27 REMARK 500 GLN D 258 -53.03 66.42 REMARK 500 GLU D 268 -99.24 -114.87 REMARK 500 ASN D 276 94.93 -165.94 REMARK 500 SER D 365 -72.19 -54.44 REMARK 500 ASN D 392 84.51 -173.24 REMARK 500 ARG D 396 -73.92 -109.70 REMARK 500 REMARK 500 THIS ENTRY HAS 52 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN B 88 VAL B 89 -149.15 REMARK 500 ASN A 88 VAL A 89 -149.15 REMARK 500 ASN C 88 VAL C 89 -149.15 REMARK 500 ASN D 88 VAL D 89 -149.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 327 0.16 SIDE CHAIN REMARK 500 ARG B 379 0.12 SIDE CHAIN REMARK 500 ARG B 432 0.12 SIDE CHAIN REMARK 500 ARG B 480 0.08 SIDE CHAIN REMARK 500 ARG A 327 0.16 SIDE CHAIN REMARK 500 ARG A 379 0.12 SIDE CHAIN REMARK 500 ARG A 432 0.12 SIDE CHAIN REMARK 500 ARG A 480 0.08 SIDE CHAIN REMARK 500 ARG C 327 0.16 SIDE CHAIN REMARK 500 ARG C 379 0.12 SIDE CHAIN REMARK 500 ARG C 432 0.12 SIDE CHAIN REMARK 500 ARG C 480 0.08 SIDE CHAIN REMARK 500 ARG D 327 0.16 SIDE CHAIN REMARK 500 ARG D 379 0.12 SIDE CHAIN REMARK 500 ARG D 432 0.12 SIDE CHAIN REMARK 500 ARG D 480 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8FLY RELATED DB: PDB REMARK 900 RELATED ID: 8FLZ RELATED DB: PDB DBREF 8FM0 B 44 492 PDB 8FM0 8FM0 44 492 DBREF 8FM0 A 44 492 PDB 8FM0 8FM0 44 492 DBREF 8FM0 C 44 492 PDB 8FM0 8FM0 44 492 DBREF 8FM0 D 44 492 PDB 8FM0 8FM0 44 492 SEQRES 1 B 358 VAL TRP LYS GLU ALA LYS THR THR LEU PHE CYS ALA SER SEQRES 2 B 358 ASP ALA LYS ALA TYR GLU LYS GLU VAL HIS ASN VAL TRP SEQRES 3 B 358 ALA THR HIS ALA CYS VAL PRO THR ASP PRO ASN PRO GLN SEQRES 4 B 358 GLU MET VAL LEU ALA ASN VAL THR GLU ASN PHE ASN MET SEQRES 5 B 358 TRP LYS ASN ASP MET VAL GLU GLN MET HIS GLU ASP ILE SEQRES 6 B 358 ILE SER LEU TRP ASP GLU SER LEU LYS PRO CYS VAL LYS SEQRES 7 B 358 LEU THR GLY GLY SER ALA ILE THR GLN ALA CYS PRO LYS SEQRES 8 B 358 VAL SER PHE ASP PRO ILE PRO LEU HIS TYR CYS ALA PRO SEQRES 9 B 358 ALA GLY PHE ALA ILE LEU LYS CYS ASN ASN LYS THR PHE SEQRES 10 B 358 ASN GLY THR GLY PRO CYS ARG ASN VAL SER THR VAL GLN SEQRES 11 B 358 CYS THR HIS GLY ILE LYS PRO VAL VAL SER THR GLN LEU SEQRES 12 B 358 LEU LEU ASN GLY SER LEU ALA GLU GLU GLU ILE ILE ILE SEQRES 13 B 358 ARG SER GLU ASN LEU THR ASN ASN ALA LYS THR ILE ILE SEQRES 14 B 358 VAL HIS LEU ASN GLU SER VAL ASN ILE VAL CYS THR ARG SEQRES 15 B 358 PRO ASN ASN GLY GLY SER GLY SER GLY GLY ASN ILE ARG SEQRES 16 B 358 GLN ALA HIS CYS ASN ILE ASN GLU SER LYS TRP ASN ASN SEQRES 17 B 358 THR LEU GLN LYS VAL GLY GLU GLU LEU ALA LYS HIS PHE SEQRES 18 B 358 PRO SER LYS THR ILE LYS PHE GLU PRO SER SER GLY GLY SEQRES 19 B 358 ASP LEU GLU ILE THR THR HIS SER PHE ASN CYS ARG GLY SEQRES 20 B 358 GLU PHE PHE TYR CYS ASN THR SER ASP LEU PHE ASN GLY SEQRES 21 B 358 THR TYR ARG ASN GLY THR TYR ASN HIS THR GLY ARG SER SEQRES 22 B 358 SER ASN GLY THR ILE THR LEU GLN CYS LYS ILE LYS GLN SEQRES 23 B 358 ILE ILE ASN MET TRP GLN GLU VAL GLY ARG ALA ILE TYR SEQRES 24 B 358 ALA PRO PRO ILE GLU GLY GLU ILE THR CYS ASN SER ASN SEQRES 25 B 358 ILE THR GLY LEU LEU LEU LEU ARG ASP GLY GLY GLN SER SEQRES 26 B 358 ASN GLU THR ASN ASP THR GLU THR PHE ARG PRO GLY GLY SEQRES 27 B 358 GLY ASP MET ARG ASP ASN TRP ARG SER GLU LEU TYR LYS SEQRES 28 B 358 TYR LYS VAL VAL GLU ILE LYS SEQRES 1 A 358 VAL TRP LYS GLU ALA LYS THR THR LEU PHE CYS ALA SER SEQRES 2 A 358 ASP ALA LYS ALA TYR GLU LYS GLU VAL HIS ASN VAL TRP SEQRES 3 A 358 ALA THR HIS ALA CYS VAL PRO THR ASP PRO ASN PRO GLN SEQRES 4 A 358 GLU MET VAL LEU ALA ASN VAL THR GLU ASN PHE ASN MET SEQRES 5 A 358 TRP LYS ASN ASP MET VAL GLU GLN MET HIS GLU ASP ILE SEQRES 6 A 358 ILE SER LEU TRP ASP GLU SER LEU LYS PRO CYS VAL LYS SEQRES 7 A 358 LEU THR GLY GLY SER ALA ILE THR GLN ALA CYS PRO LYS SEQRES 8 A 358 VAL SER PHE ASP PRO ILE PRO LEU HIS TYR CYS ALA PRO SEQRES 9 A 358 ALA GLY PHE ALA ILE LEU LYS CYS ASN ASN LYS THR PHE SEQRES 10 A 358 ASN GLY THR GLY PRO CYS ARG ASN VAL SER THR VAL GLN SEQRES 11 A 358 CYS THR HIS GLY ILE LYS PRO VAL VAL SER THR GLN LEU SEQRES 12 A 358 LEU LEU ASN GLY SER LEU ALA GLU GLU GLU ILE ILE ILE SEQRES 13 A 358 ARG SER GLU ASN LEU THR ASN ASN ALA LYS THR ILE ILE SEQRES 14 A 358 VAL HIS LEU ASN GLU SER VAL ASN ILE VAL CYS THR ARG SEQRES 15 A 358 PRO ASN ASN GLY GLY SER GLY SER GLY GLY ASN ILE ARG SEQRES 16 A 358 GLN ALA HIS CYS ASN ILE ASN GLU SER LYS TRP ASN ASN SEQRES 17 A 358 THR LEU GLN LYS VAL GLY GLU GLU LEU ALA LYS HIS PHE SEQRES 18 A 358 PRO SER LYS THR ILE LYS PHE GLU PRO SER SER GLY GLY SEQRES 19 A 358 ASP LEU GLU ILE THR THR HIS SER PHE ASN CYS ARG GLY SEQRES 20 A 358 GLU PHE PHE TYR CYS ASN THR SER ASP LEU PHE ASN GLY SEQRES 21 A 358 THR TYR ARG ASN GLY THR TYR ASN HIS THR GLY ARG SER SEQRES 22 A 358 SER ASN GLY THR ILE THR LEU GLN CYS LYS ILE LYS GLN SEQRES 23 A 358 ILE ILE ASN MET TRP GLN GLU VAL GLY ARG ALA ILE TYR SEQRES 24 A 358 ALA PRO PRO ILE GLU GLY GLU ILE THR CYS ASN SER ASN SEQRES 25 A 358 ILE THR GLY LEU LEU LEU LEU ARG ASP GLY GLY GLN SER SEQRES 26 A 358 ASN GLU THR ASN ASP THR GLU THR PHE ARG PRO GLY GLY SEQRES 27 A 358 GLY ASP MET ARG ASP ASN TRP ARG SER GLU LEU TYR LYS SEQRES 28 A 358 TYR LYS VAL VAL GLU ILE LYS SEQRES 1 C 358 VAL TRP LYS GLU ALA LYS THR THR LEU PHE CYS ALA SER SEQRES 2 C 358 ASP ALA LYS ALA TYR GLU LYS GLU VAL HIS ASN VAL TRP SEQRES 3 C 358 ALA THR HIS ALA CYS VAL PRO THR ASP PRO ASN PRO GLN SEQRES 4 C 358 GLU MET VAL LEU ALA ASN VAL THR GLU ASN PHE ASN MET SEQRES 5 C 358 TRP LYS ASN ASP MET VAL GLU GLN MET HIS GLU ASP ILE SEQRES 6 C 358 ILE SER LEU TRP ASP GLU SER LEU LYS PRO CYS VAL LYS SEQRES 7 C 358 LEU THR GLY GLY SER ALA ILE THR GLN ALA CYS PRO LYS SEQRES 8 C 358 VAL SER PHE ASP PRO ILE PRO LEU HIS TYR CYS ALA PRO SEQRES 9 C 358 ALA GLY PHE ALA ILE LEU LYS CYS ASN ASN LYS THR PHE SEQRES 10 C 358 ASN GLY THR GLY PRO CYS ARG ASN VAL SER THR VAL GLN SEQRES 11 C 358 CYS THR HIS GLY ILE LYS PRO VAL VAL SER THR GLN LEU SEQRES 12 C 358 LEU LEU ASN GLY SER LEU ALA GLU GLU GLU ILE ILE ILE SEQRES 13 C 358 ARG SER GLU ASN LEU THR ASN ASN ALA LYS THR ILE ILE SEQRES 14 C 358 VAL HIS LEU ASN GLU SER VAL ASN ILE VAL CYS THR ARG SEQRES 15 C 358 PRO ASN ASN GLY GLY SER GLY SER GLY GLY ASN ILE ARG SEQRES 16 C 358 GLN ALA HIS CYS ASN ILE ASN GLU SER LYS TRP ASN ASN SEQRES 17 C 358 THR LEU GLN LYS VAL GLY GLU GLU LEU ALA LYS HIS PHE SEQRES 18 C 358 PRO SER LYS THR ILE LYS PHE GLU PRO SER SER GLY GLY SEQRES 19 C 358 ASP LEU GLU ILE THR THR HIS SER PHE ASN CYS ARG GLY SEQRES 20 C 358 GLU PHE PHE TYR CYS ASN THR SER ASP LEU PHE ASN GLY SEQRES 21 C 358 THR TYR ARG ASN GLY THR TYR ASN HIS THR GLY ARG SER SEQRES 22 C 358 SER ASN GLY THR ILE THR LEU GLN CYS LYS ILE LYS GLN SEQRES 23 C 358 ILE ILE ASN MET TRP GLN GLU VAL GLY ARG ALA ILE TYR SEQRES 24 C 358 ALA PRO PRO ILE GLU GLY GLU ILE THR CYS ASN SER ASN SEQRES 25 C 358 ILE THR GLY LEU LEU LEU LEU ARG ASP GLY GLY GLN SER SEQRES 26 C 358 ASN GLU THR ASN ASP THR GLU THR PHE ARG PRO GLY GLY SEQRES 27 C 358 GLY ASP MET ARG ASP ASN TRP ARG SER GLU LEU TYR LYS SEQRES 28 C 358 TYR LYS VAL VAL GLU ILE LYS SEQRES 1 D 358 VAL TRP LYS GLU ALA LYS THR THR LEU PHE CYS ALA SER SEQRES 2 D 358 ASP ALA LYS ALA TYR GLU LYS GLU VAL HIS ASN VAL TRP SEQRES 3 D 358 ALA THR HIS ALA CYS VAL PRO THR ASP PRO ASN PRO GLN SEQRES 4 D 358 GLU MET VAL LEU ALA ASN VAL THR GLU ASN PHE ASN MET SEQRES 5 D 358 TRP LYS ASN ASP MET VAL GLU GLN MET HIS GLU ASP ILE SEQRES 6 D 358 ILE SER LEU TRP ASP GLU SER LEU LYS PRO CYS VAL LYS SEQRES 7 D 358 LEU THR GLY GLY SER ALA ILE THR GLN ALA CYS PRO LYS SEQRES 8 D 358 VAL SER PHE ASP PRO ILE PRO LEU HIS TYR CYS ALA PRO SEQRES 9 D 358 ALA GLY PHE ALA ILE LEU LYS CYS ASN ASN LYS THR PHE SEQRES 10 D 358 ASN GLY THR GLY PRO CYS ARG ASN VAL SER THR VAL GLN SEQRES 11 D 358 CYS THR HIS GLY ILE LYS PRO VAL VAL SER THR GLN LEU SEQRES 12 D 358 LEU LEU ASN GLY SER LEU ALA GLU GLU GLU ILE ILE ILE SEQRES 13 D 358 ARG SER GLU ASN LEU THR ASN ASN ALA LYS THR ILE ILE SEQRES 14 D 358 VAL HIS LEU ASN GLU SER VAL ASN ILE VAL CYS THR ARG SEQRES 15 D 358 PRO ASN ASN GLY GLY SER GLY SER GLY GLY ASN ILE ARG SEQRES 16 D 358 GLN ALA HIS CYS ASN ILE ASN GLU SER LYS TRP ASN ASN SEQRES 17 D 358 THR LEU GLN LYS VAL GLY GLU GLU LEU ALA LYS HIS PHE SEQRES 18 D 358 PRO SER LYS THR ILE LYS PHE GLU PRO SER SER GLY GLY SEQRES 19 D 358 ASP LEU GLU ILE THR THR HIS SER PHE ASN CYS ARG GLY SEQRES 20 D 358 GLU PHE PHE TYR CYS ASN THR SER ASP LEU PHE ASN GLY SEQRES 21 D 358 THR TYR ARG ASN GLY THR TYR ASN HIS THR GLY ARG SER SEQRES 22 D 358 SER ASN GLY THR ILE THR LEU GLN CYS LYS ILE LYS GLN SEQRES 23 D 358 ILE ILE ASN MET TRP GLN GLU VAL GLY ARG ALA ILE TYR SEQRES 24 D 358 ALA PRO PRO ILE GLU GLY GLU ILE THR CYS ASN SER ASN SEQRES 25 D 358 ILE THR GLY LEU LEU LEU LEU ARG ASP GLY GLY GLN SER SEQRES 26 D 358 ASN GLU THR ASN ASP THR GLU THR PHE ARG PRO GLY GLY SEQRES 27 D 358 GLY ASP MET ARG ASP ASN TRP ARG SER GLU LEU TYR LYS SEQRES 28 D 358 TYR LYS VAL VAL GLU ILE LYS HET NAG B 501 14 HET NAG B 502 14 HET NAG B 503 14 HET NAG B 504 14 HET NAG B 505 14 HET NAG B 506 14 HET Y1O B 507 35 HET NAG A 501 14 HET NAG A 502 14 HET NAG A 503 14 HET NAG A 504 14 HET NAG A 505 14 HET NAG A 506 14 HET Y1O A 507 35 HET NAG A 508 14 HET NAG C 501 14 HET NAG C 502 14 HET NAG C 503 14 HET NAG C 504 14 HET NAG C 505 14 HET NAG C 506 14 HET Y1O C 507 35 HET NAG C 508 14 HET NAG D 501 14 HET NAG D 502 14 HET NAG D 503 14 HET NAG D 504 14 HET NAG D 505 14 HET NAG D 506 14 HET Y1O D 507 35 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM Y1O METHYL (2R,3S)-2-(CARBAMIMIDAMIDOMETHYL)-3-[2-(4- HETNAM 2 Y1O CHLORO-3-FLUOROANILINO)(OXO)ACETAMIDO]-6- HETNAM 3 Y1O [(METHYLAMINO)METHYL]-2,3-DIHYDRO-1H-INDOLE-1- HETNAM 4 Y1O CARBOXYLATE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 5 NAG 26(C8 H15 N O6) FORMUL 11 Y1O 4(C22 H25 CL F N7 O4) FORMUL 35 HOH *196(H2 O) HELIX 1 AA1 GLU B 64 CYS B 74 1 11 HELIX 2 AA2 ASN B 98 LEU B 116 1 19 HELIX 3 AA3 GLU B 335 PHE B 353 1 19 HELIX 4 AA4 ASP B 368 THR B 373 1 6 HELIX 5 AA5 ASP B 474 TYR B 484 1 11 HELIX 6 AA6 GLU A 64 CYS A 74 1 11 HELIX 7 AA7 ASN A 98 LEU A 116 1 19 HELIX 8 AA8 GLU A 335 PHE A 353 1 19 HELIX 9 AA9 ASP A 368 THR A 373 1 6 HELIX 10 AB1 ASP A 474 TYR A 484 1 11 HELIX 11 AB2 GLU C 64 CYS C 74 1 11 HELIX 12 AB3 ASN C 98 LEU C 116 1 19 HELIX 13 AB4 GLU C 335 PHE C 353 1 19 HELIX 14 AB5 ASP C 368 THR C 373 1 6 HELIX 15 AB6 ASP C 474 TYR C 484 1 11 HELIX 16 AB7 GLU D 64 CYS D 74 1 11 HELIX 17 AB8 ASN D 98 LEU D 116 1 19 HELIX 18 AB9 GLU D 335 PHE D 353 1 19 HELIX 19 AC1 ASP D 368 THR D 373 1 6 HELIX 20 AC2 ASP D 474 TYR D 484 1 11 SHEET 1 AA1 3 VAL B 75 PRO B 76 0 SHEET 2 AA1 3 PHE B 53 SER B 56 1 N CYS B 54 O VAL B 75 SHEET 3 AA1 3 HIS B 216 CYS B 218 -1 O CYS B 218 N PHE B 53 SHEET 1 AA2 4 GLU B 83 LEU B 86 0 SHEET 2 AA2 4 VAL B 242 VAL B 245 -1 O THR B 244 N MET B 84 SHEET 3 AA2 4 ALA B 224 CYS B 228 -1 N ILE B 225 O VAL B 245 SHEET 4 AA2 4 TYR B 486 VAL B 489 -1 O LYS B 487 N LEU B 226 SHEET 1 AA3 2 GLU B 91 ASN B 94 0 SHEET 2 AA3 2 THR B 236 CYS B 239 -1 O CYS B 239 N GLU B 91 SHEET 1 AA4 4 SER B 199 THR B 202 0 SHEET 2 AA4 4 VAL B 120 THR B 123 -1 N LYS B 121 O ILE B 201 SHEET 3 AA4 4 ARG B 432 ILE B 434 -1 O ARG B 432 N LEU B 122 SHEET 4 AA4 4 ILE B 423 ASN B 425 -1 N ILE B 424 O ALA B 433 SHEET 1 AA5 7 LEU B 259 LEU B 261 0 SHEET 2 AA5 7 ILE B 443 ARG B 456 -1 O THR B 450 N LEU B 260 SHEET 3 AA5 7 ILE B 284 ARG B 298 -1 N VAL B 292 O ILE B 449 SHEET 4 AA5 7 GLN B 328 ASN B 334 -1 O HIS B 330 N THR B 297 SHEET 5 AA5 7 THR B 413 LYS B 421 -1 O CYS B 418 N ALA B 329 SHEET 6 AA5 7 GLU B 381 CYS B 385 -1 N PHE B 382 O LYS B 421 SHEET 7 AA5 7 HIS B 374 CYS B 378 -1 N CYS B 378 O GLU B 381 SHEET 1 AA6 7 ILE B 271 SER B 274 0 SHEET 2 AA6 7 ILE B 284 ARG B 298 -1 O HIS B 287 N ILE B 271 SHEET 3 AA6 7 ILE B 443 ARG B 456 -1 O ILE B 449 N VAL B 292 SHEET 4 AA6 7 THR B 465 PRO B 470 -1 O ARG B 469 N LEU B 455 SHEET 5 AA6 7 THR B 358 PHE B 361 1 N LYS B 360 O PHE B 468 SHEET 6 AA6 7 GLY B 393 TYR B 395 -1 O TYR B 395 N ILE B 359 SHEET 7 AA6 7 TYR B 403 HIS B 405 -1 O ASN B 404 N THR B 394 SHEET 1 AA7 3 VAL A 75 PRO A 76 0 SHEET 2 AA7 3 PHE A 53 SER A 56 1 N CYS A 54 O VAL A 75 SHEET 3 AA7 3 HIS A 216 CYS A 218 -1 O CYS A 218 N PHE A 53 SHEET 1 AA8 4 GLU A 83 LEU A 86 0 SHEET 2 AA8 4 VAL A 242 VAL A 245 -1 O THR A 244 N MET A 84 SHEET 3 AA8 4 ALA A 224 CYS A 228 -1 N ILE A 225 O VAL A 245 SHEET 4 AA8 4 TYR A 486 VAL A 489 -1 O LYS A 487 N LEU A 226 SHEET 1 AA9 2 GLU A 91 ASN A 94 0 SHEET 2 AA9 2 THR A 236 CYS A 239 -1 O CYS A 239 N GLU A 91 SHEET 1 AB1 4 SER A 199 THR A 202 0 SHEET 2 AB1 4 VAL A 120 THR A 123 -1 N LYS A 121 O ILE A 201 SHEET 3 AB1 4 ARG A 432 ILE A 434 -1 O ARG A 432 N LEU A 122 SHEET 4 AB1 4 ILE A 423 ASN A 425 -1 N ILE A 424 O ALA A 433 SHEET 1 AB2 7 LEU A 259 LEU A 261 0 SHEET 2 AB2 7 ILE A 443 ARG A 456 -1 O THR A 450 N LEU A 260 SHEET 3 AB2 7 ILE A 284 ARG A 298 -1 N VAL A 292 O ILE A 449 SHEET 4 AB2 7 GLN A 328 ASN A 334 -1 O HIS A 330 N THR A 297 SHEET 5 AB2 7 THR A 413 LYS A 421 -1 O CYS A 418 N ALA A 329 SHEET 6 AB2 7 GLU A 381 CYS A 385 -1 N PHE A 382 O LYS A 421 SHEET 7 AB2 7 HIS A 374 CYS A 378 -1 N CYS A 378 O GLU A 381 SHEET 1 AB3 7 ILE A 271 SER A 274 0 SHEET 2 AB3 7 ILE A 284 ARG A 298 -1 O HIS A 287 N ILE A 271 SHEET 3 AB3 7 ILE A 443 ARG A 456 -1 O ILE A 449 N VAL A 292 SHEET 4 AB3 7 THR A 465 PRO A 470 -1 O ARG A 469 N LEU A 455 SHEET 5 AB3 7 THR A 358 PHE A 361 1 N LYS A 360 O PHE A 468 SHEET 6 AB3 7 GLY A 393 TYR A 395 -1 O TYR A 395 N ILE A 359 SHEET 7 AB3 7 TYR A 403 HIS A 405 -1 O ASN A 404 N THR A 394 SHEET 1 AB4 3 VAL C 75 PRO C 76 0 SHEET 2 AB4 3 PHE C 53 SER C 56 1 N CYS C 54 O VAL C 75 SHEET 3 AB4 3 HIS C 216 CYS C 218 -1 O CYS C 218 N PHE C 53 SHEET 1 AB5 4 GLU C 83 LEU C 86 0 SHEET 2 AB5 4 VAL C 242 VAL C 245 -1 O THR C 244 N MET C 84 SHEET 3 AB5 4 ALA C 224 CYS C 228 -1 N ILE C 225 O VAL C 245 SHEET 4 AB5 4 TYR C 486 VAL C 489 -1 O LYS C 487 N LEU C 226 SHEET 1 AB6 2 GLU C 91 ASN C 94 0 SHEET 2 AB6 2 THR C 236 CYS C 239 -1 O CYS C 239 N GLU C 91 SHEET 1 AB7 4 SER C 199 THR C 202 0 SHEET 2 AB7 4 VAL C 120 THR C 123 -1 N LYS C 121 O ILE C 201 SHEET 3 AB7 4 ARG C 432 ILE C 434 -1 O ARG C 432 N LEU C 122 SHEET 4 AB7 4 ILE C 423 ASN C 425 -1 N ILE C 424 O ALA C 433 SHEET 1 AB8 7 LEU C 259 LEU C 261 0 SHEET 2 AB8 7 ILE C 443 ARG C 456 -1 O THR C 450 N LEU C 260 SHEET 3 AB8 7 ILE C 284 ARG C 298 -1 N VAL C 292 O ILE C 449 SHEET 4 AB8 7 GLN C 328 ASN C 334 -1 O HIS C 330 N THR C 297 SHEET 5 AB8 7 THR C 413 LYS C 421 -1 O CYS C 418 N ALA C 329 SHEET 6 AB8 7 GLU C 381 CYS C 385 -1 N PHE C 382 O LYS C 421 SHEET 7 AB8 7 HIS C 374 CYS C 378 -1 N CYS C 378 O GLU C 381 SHEET 1 AB9 7 ILE C 271 SER C 274 0 SHEET 2 AB9 7 ILE C 284 ARG C 298 -1 O HIS C 287 N ILE C 271 SHEET 3 AB9 7 ILE C 443 ARG C 456 -1 O ILE C 449 N VAL C 292 SHEET 4 AB9 7 THR C 465 PRO C 470 -1 O ARG C 469 N LEU C 455 SHEET 5 AB9 7 THR C 358 PHE C 361 1 N LYS C 360 O PHE C 468 SHEET 6 AB9 7 GLY C 393 TYR C 395 -1 O TYR C 395 N ILE C 359 SHEET 7 AB9 7 TYR C 403 HIS C 405 -1 O ASN C 404 N THR C 394 SHEET 1 AC1 3 VAL D 75 PRO D 76 0 SHEET 2 AC1 3 PHE D 53 SER D 56 1 N CYS D 54 O VAL D 75 SHEET 3 AC1 3 HIS D 216 CYS D 218 -1 O CYS D 218 N PHE D 53 SHEET 1 AC2 4 GLU D 83 LEU D 86 0 SHEET 2 AC2 4 VAL D 242 VAL D 245 -1 O THR D 244 N MET D 84 SHEET 3 AC2 4 ALA D 224 CYS D 228 -1 N ILE D 225 O VAL D 245 SHEET 4 AC2 4 TYR D 486 VAL D 489 -1 O LYS D 487 N LEU D 226 SHEET 1 AC3 2 GLU D 91 ASN D 94 0 SHEET 2 AC3 2 THR D 236 CYS D 239 -1 O CYS D 239 N GLU D 91 SHEET 1 AC4 4 SER D 199 THR D 202 0 SHEET 2 AC4 4 VAL D 120 THR D 123 -1 N LYS D 121 O ILE D 201 SHEET 3 AC4 4 ARG D 432 ILE D 434 -1 O ARG D 432 N LEU D 122 SHEET 4 AC4 4 ILE D 423 ASN D 425 -1 N ILE D 424 O ALA D 433 SHEET 1 AC5 7 LEU D 259 LEU D 261 0 SHEET 2 AC5 7 ILE D 443 ARG D 456 -1 O THR D 450 N LEU D 260 SHEET 3 AC5 7 ILE D 284 ARG D 298 -1 N VAL D 292 O ILE D 449 SHEET 4 AC5 7 GLN D 328 ASN D 334 -1 O HIS D 330 N THR D 297 SHEET 5 AC5 7 THR D 413 LYS D 421 -1 O CYS D 418 N ALA D 329 SHEET 6 AC5 7 GLU D 381 CYS D 385 -1 N PHE D 382 O LYS D 421 SHEET 7 AC5 7 HIS D 374 CYS D 378 -1 N CYS D 378 O GLU D 381 SHEET 1 AC6 7 ILE D 271 SER D 274 0 SHEET 2 AC6 7 ILE D 284 ARG D 298 -1 O HIS D 287 N ILE D 271 SHEET 3 AC6 7 ILE D 443 ARG D 456 -1 O ILE D 449 N VAL D 292 SHEET 4 AC6 7 THR D 465 PRO D 470 -1 O ARG D 469 N LEU D 455 SHEET 5 AC6 7 THR D 358 PHE D 361 1 N LYS D 360 O PHE D 468 SHEET 6 AC6 7 GLY D 393 TYR D 395 -1 O TYR D 395 N ILE D 359 SHEET 7 AC6 7 TYR D 403 HIS D 405 -1 O ASN D 404 N THR D 394 SSBOND 1 CYS B 54 CYS B 74 1555 1555 2.04 SSBOND 2 CYS B 119 CYS B 205 1555 1555 2.02 SSBOND 3 CYS B 218 CYS B 247 1555 1555 2.03 SSBOND 4 CYS B 228 CYS B 239 1555 1555 2.04 SSBOND 5 CYS B 296 CYS B 331 1555 1555 2.04 SSBOND 6 CYS B 378 CYS B 445 1555 1555 2.04 SSBOND 7 CYS B 385 CYS B 418 1555 1555 2.04 SSBOND 8 CYS A 54 CYS A 74 1555 1555 2.04 SSBOND 9 CYS A 119 CYS A 205 1555 1555 2.02 SSBOND 10 CYS A 218 CYS A 247 1555 1555 2.03 SSBOND 11 CYS A 228 CYS A 239 1555 1555 2.04 SSBOND 12 CYS A 296 CYS A 331 1555 1555 2.04 SSBOND 13 CYS A 378 CYS A 445 1555 1555 2.04 SSBOND 14 CYS A 385 CYS A 418 1555 1555 2.04 SSBOND 15 CYS C 54 CYS C 74 1555 1555 2.04 SSBOND 16 CYS C 119 CYS C 205 1555 1555 2.02 SSBOND 17 CYS C 218 CYS C 247 1555 1555 2.03 SSBOND 18 CYS C 228 CYS C 239 1555 1555 2.04 SSBOND 19 CYS C 296 CYS C 331 1555 1555 2.04 SSBOND 20 CYS C 378 CYS C 445 1555 1555 2.04 SSBOND 21 CYS C 385 CYS C 418 1555 1555 2.04 SSBOND 22 CYS D 54 CYS D 74 1555 1555 2.04 SSBOND 23 CYS D 119 CYS D 205 1555 1555 2.02 SSBOND 24 CYS D 218 CYS D 247 1555 1555 2.03 SSBOND 25 CYS D 228 CYS D 239 1555 1555 2.04 SSBOND 26 CYS D 296 CYS D 331 1555 1555 2.04 SSBOND 27 CYS D 378 CYS D 445 1555 1555 2.04 SSBOND 28 CYS D 385 CYS D 418 1555 1555 2.04 LINK ND2 ASN B 234 C1 NAG B 501 1555 1555 1.44 LINK ND2 ASN B 262 C1 NAG B 502 1555 1555 1.44 LINK ND2 ASN B 276 C1 NAG B 506 1555 1555 1.44 LINK ND2 ASN B 289 C1 NAG B 503 1555 1555 1.45 LINK ND2 ASN B 386 C1 NAG B 504 1555 1555 1.44 LINK ND2 ASN B 392 C1 NAG B 505 1555 1555 1.44 LINK ND2 ASN A 234 C1 NAG A 501 1555 1555 1.44 LINK ND2 ASN A 262 C1 NAG A 502 1555 1555 1.44 LINK ND2 ASN A 276 C1 NAG A 506 1555 1555 1.44 LINK ND2 ASN A 289 C1 NAG A 503 1555 1555 1.45 LINK ND2 ASN A 339 C1 NAG A 508 1555 1555 1.41 LINK ND2 ASN A 386 C1 NAG A 504 1555 1555 1.44 LINK ND2 ASN A 392 C1 NAG A 505 1555 1555 1.44 LINK ND2 ASN C 234 C1 NAG C 501 1555 1555 1.44 LINK ND2 ASN C 262 C1 NAG C 502 1555 1555 1.44 LINK ND2 ASN C 276 C1 NAG C 506 1555 1555 1.44 LINK ND2 ASN C 289 C1 NAG C 503 1555 1555 1.45 LINK ND2 ASN C 339 C1 NAG C 508 1555 1555 1.46 LINK ND2 ASN C 386 C1 NAG C 504 1555 1555 1.44 LINK ND2 ASN C 392 C1 NAG C 505 1555 1555 1.44 LINK ND2 ASN D 234 C1 NAG D 501 1555 1555 1.44 LINK ND2 ASN D 262 C1 NAG D 502 1555 1555 1.44 LINK ND2 ASN D 276 C1 NAG D 506 1555 1555 1.44 LINK ND2 ASN D 289 C1 NAG D 503 1555 1555 1.45 LINK ND2 ASN D 386 C1 NAG D 504 1555 1555 1.44 LINK ND2 ASN D 392 C1 NAG D 505 1555 1555 1.44 CRYST1 71.796 120.888 195.163 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013928 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008272 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005124 0.00000