HEADER SIGNALING PROTEIN 27-DEC-22 8FN8 TITLE CRYSTAL STRUCTURE OF THE C-TERMINAL FG DOMAIN OF TNC WITH THE SINGLE TITLE 2 FN DOMAIN OF PTPRZ COMPND MOL_ID: 1; COMPND 2 MOLECULE: TENASCIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FG DOMAIN (UNP RESIDUES 1975-2201); COMPND 5 SYNONYM: TN,CYTOTACTIN,GMEM,GP 150-225,GLIOMA-ASSOCIATED- COMPND 6 EXTRACELLULAR MATRIX ANTIGEN,HEXABRACHION,JI,MYOTENDINOUS ANTIGEN, COMPND 7 NEURONECTIN,TENASCIN-C,TN-C; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE ZETA; COMPND 11 CHAIN: B; COMPND 12 FRAGMENT: UNP RESIDUES 310-411; COMPND 13 SYNONYM: R-PTP-ZETA,PROTEIN-TYROSINE PHOSPHATASE RECEPTOR TYPE Z COMPND 14 POLYPEPTIDE 1,PROTEIN-TYROSINE PHOSPHATASE RECEPTOR TYPE Z COMPND 15 POLYPEPTIDE 2,R-PTP-ZETA-2; COMPND 16 EC: 3.1.3.48; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TNC, HXB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET32; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: PTPRZ1, HTPZP2, PTPRZ, PTPRZ2, PTPZ; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET32 KEYWDS COMPLEX, RECEPTOR PROTEIN TYROSINE PHOSPHATASE, EXTRACELLULAR MATRIX, KEYWDS 2 FIBRONECTIN TYPE III, FIBRINOGEN, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.BOUYAIN REVDAT 3 25-OCT-23 8FN8 1 REMARK REVDAT 2 02-AUG-23 8FN8 1 JRNL REVDAT 1 12-JUL-23 8FN8 0 JRNL AUTH A.SINHA,J.KAWAKAMI,K.S.COLE,A.LADUTSKA,M.Y.NGUYEN, JRNL AUTH 2 M.S.ZALMAI,B.L.HOLDER,V.M.BROERMAN,R.T.MATTHEWS,S.BOUYAIN JRNL TITL PROTEIN-PROTEIN INTERACTIONS BETWEEN TENASCIN-R AND RPTP JRNL TITL 2 ZETA /PHOSPHACAN ARE CRITICAL TO MAINTAIN THE ARCHITECTURE JRNL TITL 3 OF PERINEURONAL NETS. JRNL REF J.BIOL.CHEM. V. 299 04952 2023 JRNL REFN ESSN 1083-351X JRNL PMID 37356715 JRNL DOI 10.1016/J.JBC.2023.104952 REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.88 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 25084 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.890 REMARK 3 FREE R VALUE TEST SET COUNT : 1979 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.8800 - 4.5600 0.99 1808 155 0.1543 0.1662 REMARK 3 2 4.5600 - 3.6200 0.99 1713 146 0.1331 0.1675 REMARK 3 3 3.6200 - 3.1600 0.99 1697 145 0.1606 0.1982 REMARK 3 4 3.1600 - 2.8700 1.00 1675 143 0.1813 0.2504 REMARK 3 5 2.8700 - 2.6700 0.99 1677 144 0.1855 0.2153 REMARK 3 6 2.6700 - 2.5100 0.99 1657 142 0.1863 0.2285 REMARK 3 7 2.5100 - 2.3800 0.99 1656 141 0.1770 0.2245 REMARK 3 8 2.3800 - 2.2800 0.99 1636 140 0.1759 0.2396 REMARK 3 9 2.2800 - 2.1900 0.98 1637 140 0.1585 0.2188 REMARK 3 10 2.1900 - 2.1200 0.99 1646 141 0.1660 0.2183 REMARK 3 11 2.1200 - 2.0500 0.97 1603 137 0.1676 0.2136 REMARK 3 12 2.0500 - 1.9900 0.97 1601 138 0.1708 0.2424 REMARK 3 13 1.9900 - 1.9400 0.95 1584 139 0.1763 0.2190 REMARK 3 14 1.9400 - 1.8900 0.92 1515 128 0.1953 0.2377 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.151 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.944 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.95 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2679 REMARK 3 ANGLE : 0.667 3637 REMARK 3 CHIRALITY : 0.046 373 REMARK 3 PLANARITY : 0.004 478 REMARK 3 DIHEDRAL : 13.413 981 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 18 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1975 THROUGH 2015 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.1194 57.9738 59.2596 REMARK 3 T TENSOR REMARK 3 T11: 0.1851 T22: 0.2647 REMARK 3 T33: 0.2246 T12: -0.0511 REMARK 3 T13: 0.0317 T23: -0.0277 REMARK 3 L TENSOR REMARK 3 L11: 2.6490 L22: 2.0215 REMARK 3 L33: 2.1914 L12: 0.1360 REMARK 3 L13: -0.0769 L23: 0.1622 REMARK 3 S TENSOR REMARK 3 S11: 0.0391 S12: 0.0206 S13: 0.0561 REMARK 3 S21: -0.0409 S22: 0.0386 S23: -0.3539 REMARK 3 S31: -0.1404 S32: 0.3889 S33: -0.0725 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2016 THROUGH 2045 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.9743 47.7906 53.0533 REMARK 3 T TENSOR REMARK 3 T11: 0.1115 T22: 0.1776 REMARK 3 T33: 0.0815 T12: -0.0180 REMARK 3 T13: 0.0018 T23: 0.0232 REMARK 3 L TENSOR REMARK 3 L11: 2.4363 L22: 2.3839 REMARK 3 L33: 1.5572 L12: 0.4613 REMARK 3 L13: -0.0714 L23: -0.1991 REMARK 3 S TENSOR REMARK 3 S11: -0.0622 S12: 0.1829 S13: -0.0176 REMARK 3 S21: -0.3407 S22: 0.0221 S23: 0.0481 REMARK 3 S31: -0.0922 S32: 0.0479 S33: 0.0575 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2046 THROUGH 2057 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.5432 50.4951 49.2125 REMARK 3 T TENSOR REMARK 3 T11: 0.2175 T22: 0.2276 REMARK 3 T33: 0.1455 T12: -0.0330 REMARK 3 T13: 0.0141 T23: 0.0040 REMARK 3 L TENSOR REMARK 3 L11: 1.9239 L22: 3.3284 REMARK 3 L33: 0.9102 L12: -0.5953 REMARK 3 L13: -0.0275 L23: 0.0463 REMARK 3 S TENSOR REMARK 3 S11: 0.0300 S12: 0.2287 S13: 0.3633 REMARK 3 S21: -0.6406 S22: -0.0092 S23: -0.0717 REMARK 3 S31: -0.1840 S32: -0.0784 S33: -0.0276 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2058 THROUGH 2078 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.3829 47.6589 62.5189 REMARK 3 T TENSOR REMARK 3 T11: 0.1360 T22: 0.1532 REMARK 3 T33: 0.1129 T12: -0.0169 REMARK 3 T13: -0.0042 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: 2.9324 L22: 3.0031 REMARK 3 L33: 1.5938 L12: -0.0789 REMARK 3 L13: -0.5196 L23: 0.3961 REMARK 3 S TENSOR REMARK 3 S11: -0.0103 S12: -0.2103 S13: 0.0672 REMARK 3 S21: 0.0641 S22: 0.0806 S23: -0.1717 REMARK 3 S31: 0.0002 S32: 0.1207 S33: -0.0579 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2079 THROUGH 2097 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.1749 45.1476 65.0978 REMARK 3 T TENSOR REMARK 3 T11: 0.0878 T22: 0.1283 REMARK 3 T33: 0.0620 T12: -0.0183 REMARK 3 T13: -0.0099 T23: 0.0017 REMARK 3 L TENSOR REMARK 3 L11: 1.8412 L22: 2.6756 REMARK 3 L33: 2.0368 L12: 0.3975 REMARK 3 L13: -0.3296 L23: 0.4358 REMARK 3 S TENSOR REMARK 3 S11: -0.0587 S12: -0.1916 S13: -0.0371 REMARK 3 S21: 0.0635 S22: 0.0790 S23: -0.0122 REMARK 3 S31: 0.0271 S32: 0.1214 S33: -0.0490 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2098 THROUGH 2114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.7021 40.2652 66.9964 REMARK 3 T TENSOR REMARK 3 T11: 0.1769 T22: 0.1997 REMARK 3 T33: 0.1204 T12: -0.0041 REMARK 3 T13: -0.0082 T23: 0.0146 REMARK 3 L TENSOR REMARK 3 L11: 3.0789 L22: 2.1569 REMARK 3 L33: 1.5137 L12: -0.6584 REMARK 3 L13: -1.2836 L23: 0.5932 REMARK 3 S TENSOR REMARK 3 S11: -0.0533 S12: -0.1355 S13: -0.2454 REMARK 3 S21: 0.1957 S22: -0.0057 S23: -0.0894 REMARK 3 S31: 0.2300 S32: 0.0730 S33: 0.0599 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2115 THROUGH 2132 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.6838 31.3649 58.6193 REMARK 3 T TENSOR REMARK 3 T11: 0.1679 T22: 0.2021 REMARK 3 T33: 0.1997 T12: -0.0198 REMARK 3 T13: 0.0090 T23: -0.0127 REMARK 3 L TENSOR REMARK 3 L11: 1.4889 L22: 2.0839 REMARK 3 L33: 1.4592 L12: 0.6082 REMARK 3 L13: 0.9950 L23: 0.1784 REMARK 3 S TENSOR REMARK 3 S11: -0.1087 S12: 0.1912 S13: -0.4133 REMARK 3 S21: -0.0965 S22: 0.1373 S23: -0.2496 REMARK 3 S31: 0.1892 S32: 0.1536 S33: -0.0313 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2133 THROUGH 2149 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.1839 31.8050 55.9220 REMARK 3 T TENSOR REMARK 3 T11: 0.1762 T22: 0.1772 REMARK 3 T33: 0.2058 T12: -0.0122 REMARK 3 T13: -0.0143 T23: -0.0277 REMARK 3 L TENSOR REMARK 3 L11: 2.3494 L22: 4.2161 REMARK 3 L33: 1.8386 L12: 1.4932 REMARK 3 L13: -0.4929 L23: -0.1096 REMARK 3 S TENSOR REMARK 3 S11: -0.1525 S12: 0.2148 S13: -0.3068 REMARK 3 S21: -0.2924 S22: 0.1695 S23: 0.3650 REMARK 3 S31: 0.4071 S32: -0.0708 S33: -0.0384 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2150 THROUGH 2173 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.7663 41.2944 56.9889 REMARK 3 T TENSOR REMARK 3 T11: 0.1296 T22: 0.1282 REMARK 3 T33: 0.1349 T12: -0.0233 REMARK 3 T13: -0.0335 T23: 0.0063 REMARK 3 L TENSOR REMARK 3 L11: 2.7302 L22: 2.7083 REMARK 3 L33: 1.4806 L12: -0.0278 REMARK 3 L13: 0.2356 L23: 0.0107 REMARK 3 S TENSOR REMARK 3 S11: -0.1821 S12: 0.1628 S13: -0.1076 REMARK 3 S21: -0.3780 S22: 0.0781 S23: 0.4508 REMARK 3 S31: 0.1297 S32: -0.1305 S33: 0.0514 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2174 THROUGH 2191 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.5437 49.6766 62.1161 REMARK 3 T TENSOR REMARK 3 T11: 0.1648 T22: 0.1101 REMARK 3 T33: 0.0852 T12: 0.0032 REMARK 3 T13: 0.0061 T23: -0.0125 REMARK 3 L TENSOR REMARK 3 L11: 2.5094 L22: 2.8723 REMARK 3 L33: 1.8908 L12: 0.1455 REMARK 3 L13: 0.0947 L23: -0.8285 REMARK 3 S TENSOR REMARK 3 S11: -0.1322 S12: 0.2218 S13: 0.2587 REMARK 3 S21: 0.0849 S22: 0.0435 S23: 0.1747 REMARK 3 S31: -0.1789 S32: 0.2051 S33: 0.0868 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 310 THROUGH 318 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.0339 24.3994 54.7657 REMARK 3 T TENSOR REMARK 3 T11: 0.2299 T22: 0.2124 REMARK 3 T33: 0.2942 T12: 0.0099 REMARK 3 T13: -0.0489 T23: 0.0467 REMARK 3 L TENSOR REMARK 3 L11: 6.2884 L22: 2.9167 REMARK 3 L33: 6.2823 L12: -1.4119 REMARK 3 L13: -3.8115 L23: 1.2870 REMARK 3 S TENSOR REMARK 3 S11: 0.1829 S12: 0.1602 S13: 0.5309 REMARK 3 S21: -0.1288 S22: 0.3280 S23: 0.2501 REMARK 3 S31: 0.4361 S32: -0.0710 S33: -0.5376 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 319 THROUGH 331 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.1340 11.6267 52.3241 REMARK 3 T TENSOR REMARK 3 T11: 0.3758 T22: 0.3017 REMARK 3 T33: 0.3746 T12: 0.0327 REMARK 3 T13: 0.0266 T23: -0.0090 REMARK 3 L TENSOR REMARK 3 L11: 4.0652 L22: 9.1763 REMARK 3 L33: 2.5634 L12: -3.3393 REMARK 3 L13: 0.9045 L23: -1.7083 REMARK 3 S TENSOR REMARK 3 S11: 0.5324 S12: 0.6247 S13: -0.1228 REMARK 3 S21: -0.9433 S22: -0.5519 S23: -1.0955 REMARK 3 S31: 0.3669 S32: 0.4477 S33: -0.0156 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 332 THROUGH 342 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.1360 30.0329 57.5574 REMARK 3 T TENSOR REMARK 3 T11: 0.2152 T22: 0.1951 REMARK 3 T33: 0.3088 T12: -0.0307 REMARK 3 T13: -0.0102 T23: -0.0109 REMARK 3 L TENSOR REMARK 3 L11: 5.6842 L22: 3.6198 REMARK 3 L33: 4.4867 L12: -0.6529 REMARK 3 L13: 0.0593 L23: -0.4463 REMARK 3 S TENSOR REMARK 3 S11: 0.2125 S12: -0.2226 S13: 0.8010 REMARK 3 S21: 0.0278 S22: -0.0507 S23: 0.1251 REMARK 3 S31: -0.4843 S32: -0.1713 S33: -0.1879 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 343 THROUGH 352 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.7149 16.9349 61.8600 REMARK 3 T TENSOR REMARK 3 T11: 0.2196 T22: 0.2106 REMARK 3 T33: 0.2042 T12: -0.0160 REMARK 3 T13: 0.0003 T23: 0.0255 REMARK 3 L TENSOR REMARK 3 L11: 1.5214 L22: 2.6088 REMARK 3 L33: 2.4295 L12: -0.5696 REMARK 3 L13: -0.1220 L23: 2.4613 REMARK 3 S TENSOR REMARK 3 S11: 0.1118 S12: -0.2594 S13: -0.0547 REMARK 3 S21: 0.9988 S22: -0.0681 S23: 0.0412 REMARK 3 S31: 0.2123 S32: 0.1348 S33: -0.0266 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 353 THROUGH 360 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.4765 0.8852 59.9938 REMARK 3 T TENSOR REMARK 3 T11: 0.5783 T22: 0.3499 REMARK 3 T33: 0.6714 T12: 0.0210 REMARK 3 T13: -0.0307 T23: -0.0139 REMARK 3 L TENSOR REMARK 3 L11: 3.0165 L22: 3.9770 REMARK 3 L33: 3.2303 L12: 0.1844 REMARK 3 L13: 1.3949 L23: -1.8572 REMARK 3 S TENSOR REMARK 3 S11: 0.1030 S12: -0.2560 S13: -1.1775 REMARK 3 S21: 0.3969 S22: -0.0007 S23: 0.8066 REMARK 3 S31: 0.1821 S32: -0.2746 S33: -0.0980 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 361 THROUGH 371 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.5410 21.8823 62.7560 REMARK 3 T TENSOR REMARK 3 T11: 0.2499 T22: 0.2264 REMARK 3 T33: 0.2521 T12: 0.0071 REMARK 3 T13: -0.0499 T23: -0.0183 REMARK 3 L TENSOR REMARK 3 L11: 1.3319 L22: 3.9643 REMARK 3 L33: 1.8371 L12: 0.6479 REMARK 3 L13: -0.0624 L23: -0.0349 REMARK 3 S TENSOR REMARK 3 S11: 0.1669 S12: -0.2420 S13: -0.0433 REMARK 3 S21: 0.2208 S22: -0.0333 S23: -0.3234 REMARK 3 S31: 0.2035 S32: 0.2426 S33: -0.1209 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 372 THROUGH 392 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.2244 10.7191 57.6029 REMARK 3 T TENSOR REMARK 3 T11: 0.2422 T22: 0.1814 REMARK 3 T33: 0.2292 T12: -0.0037 REMARK 3 T13: -0.0369 T23: 0.0020 REMARK 3 L TENSOR REMARK 3 L11: 1.2399 L22: 2.6160 REMARK 3 L33: 1.0021 L12: -0.2912 REMARK 3 L13: 0.0286 L23: 0.4448 REMARK 3 S TENSOR REMARK 3 S11: 0.0786 S12: 0.1280 S13: -0.1796 REMARK 3 S21: 0.2122 S22: -0.1254 S23: -0.1169 REMARK 3 S31: 0.3155 S32: 0.0110 S33: 0.0381 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 393 THROUGH 410 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.0696 15.2318 56.8065 REMARK 3 T TENSOR REMARK 3 T11: 0.2332 T22: 0.2116 REMARK 3 T33: 0.2114 T12: -0.0122 REMARK 3 T13: -0.0348 T23: 0.0401 REMARK 3 L TENSOR REMARK 3 L11: 2.5754 L22: 3.1878 REMARK 3 L33: 1.7960 L12: -0.4095 REMARK 3 L13: 0.0781 L23: 0.4891 REMARK 3 S TENSOR REMARK 3 S11: 0.1636 S12: 0.1742 S13: -0.1958 REMARK 3 S21: -0.3056 S22: -0.1878 S23: 0.4647 REMARK 3 S31: 0.0969 S32: -0.1956 S33: -0.0218 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8FN8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JAN-23. REMARK 100 THE DEPOSITION ID IS D_1000271035. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25470 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.11300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.34200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 2J3F & 1FNA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% W/V PEG3350, 100 MM TRIS-HCL, PH REMARK 280 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.35350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.21400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.76000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.21400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.35350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.76000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1971 REMARK 465 PRO A 1972 REMARK 465 GLY A 1973 REMARK 465 SER A 1974 REMARK 465 ARG A 2192 REMARK 465 ASN A 2193 REMARK 465 LEU A 2194 REMARK 465 GLU A 2195 REMARK 465 GLY A 2196 REMARK 465 ARG A 2197 REMARK 465 ARG A 2198 REMARK 465 LYS A 2199 REMARK 465 ARG A 2200 REMARK 465 ALA A 2201 REMARK 465 GLY B 306 REMARK 465 PRO B 307 REMARK 465 GLY B 308 REMARK 465 SER B 309 REMARK 465 ASP B 411 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A2008 53.25 -110.94 REMARK 500 LYS A2030 -18.46 -154.89 REMARK 500 ASN A2031 -0.40 -152.75 REMARK 500 GLU A2052 -137.56 -124.04 REMARK 500 ARG A2147 -93.49 -111.36 REMARK 500 ASN A2148 65.31 -154.88 REMARK 500 ASN A2153 54.00 -144.81 REMARK 500 CYS B 311 -75.99 66.69 REMARK 500 GLU B 323 -63.11 -92.42 REMARK 500 ASN B 324 -162.92 -119.85 REMARK 500 ASP B 340 -74.03 -131.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A2128 OD1 REMARK 620 2 ASP A2128 OD2 51.0 REMARK 620 3 ASP A2130 OD1 74.2 115.1 REMARK 620 4 ALA A2132 O 150.3 158.4 83.4 REMARK 620 5 THR A2134 O 120.9 84.2 99.8 81.5 REMARK 620 6 HOH A2478 O 74.8 107.9 84.4 84.0 164.3 REMARK 620 7 HOH A2527 O 114.9 83.9 158.4 80.5 92.0 79.7 REMARK 620 N 1 2 3 4 5 6 DBREF 8FN8 A 1975 2201 UNP P24821 TENA_HUMAN 1975 2201 DBREF 8FN8 B 310 411 UNP P23471 PTPRZ_HUMAN 310 411 SEQADV 8FN8 GLY A 1971 UNP P24821 EXPRESSION TAG SEQADV 8FN8 PRO A 1972 UNP P24821 EXPRESSION TAG SEQADV 8FN8 GLY A 1973 UNP P24821 EXPRESSION TAG SEQADV 8FN8 SER A 1974 UNP P24821 EXPRESSION TAG SEQADV 8FN8 GLY B 306 UNP P23471 EXPRESSION TAG SEQADV 8FN8 PRO B 307 UNP P23471 EXPRESSION TAG SEQADV 8FN8 GLY B 308 UNP P23471 EXPRESSION TAG SEQADV 8FN8 SER B 309 UNP P23471 EXPRESSION TAG SEQRES 1 A 231 GLY PRO GLY SER GLY LEU LEU TYR PRO PHE PRO LYS ASP SEQRES 2 A 231 CYS SER GLN ALA MET LEU ASN GLY ASP THR THR SER GLY SEQRES 3 A 231 LEU TYR THR ILE TYR LEU ASN GLY ASP LYS ALA GLU ALA SEQRES 4 A 231 LEU GLU VAL PHE CYS ASP MET THR SER ASP GLY GLY GLY SEQRES 5 A 231 TRP ILE VAL PHE LEU ARG ARG LYS ASN GLY ARG GLU ASN SEQRES 6 A 231 PHE TYR GLN ASN TRP LYS ALA TYR ALA ALA GLY PHE GLY SEQRES 7 A 231 ASP ARG ARG GLU GLU PHE TRP LEU GLY LEU ASP ASN LEU SEQRES 8 A 231 ASN LYS ILE THR ALA GLN GLY GLN TYR GLU LEU ARG VAL SEQRES 9 A 231 ASP LEU ARG ASP HIS GLY GLU THR ALA PHE ALA VAL TYR SEQRES 10 A 231 ASP LYS PHE SER VAL GLY ASP ALA LYS THR ARG TYR LYS SEQRES 11 A 231 LEU LYS VAL GLU GLY TYR SER GLY THR ALA GLY ASP SER SEQRES 12 A 231 MET ALA TYR HIS ASN GLY ARG SER PHE SER THR PHE ASP SEQRES 13 A 231 LYS ASP THR ASP SER ALA ILE THR ASN CYS ALA LEU SER SEQRES 14 A 231 TYR LYS GLY ALA PHE TRP TYR ARG ASN CYS HIS ARG VAL SEQRES 15 A 231 ASN LEU MET GLY ARG TYR GLY ASP ASN ASN HIS SER GLN SEQRES 16 A 231 GLY VAL ASN TRP PHE HIS TRP LYS GLY HIS GLU HIS SER SEQRES 17 A 231 ILE GLN PHE ALA GLU MET LYS LEU ARG PRO SER ASN PHE SEQRES 18 A 231 ARG ASN LEU GLU GLY ARG ARG LYS ARG ALA SEQRES 1 B 106 GLY PRO GLY SER VAL CYS SER SER GLU PRO GLU ASN VAL SEQRES 2 B 106 GLN ALA ASP PRO GLU ASN TYR THR SER LEU LEU VAL THR SEQRES 3 B 106 TRP GLU ARG PRO ARG VAL VAL TYR ASP THR MET ILE GLU SEQRES 4 B 106 LYS PHE ALA VAL LEU TYR GLN GLN LEU ASP GLY GLU ASP SEQRES 5 B 106 GLN THR LYS HIS GLU PHE LEU THR ASP GLY TYR GLN ASP SEQRES 6 B 106 LEU GLY ALA ILE LEU ASN ASN LEU LEU PRO ASN MET SER SEQRES 7 B 106 TYR VAL LEU GLN ILE VAL ALA ILE CYS THR ASN GLY LEU SEQRES 8 B 106 TYR GLY LYS TYR SER ASP GLN LEU ILE VAL ASP MET PRO SEQRES 9 B 106 THR ASP HET CA A2301 1 HETNAM CA CALCIUM ION FORMUL 3 CA CA 2+ FORMUL 4 HOH *229(H2 O) HELIX 1 AA1 ASP A 1983 ASN A 1990 1 8 HELIX 2 AA2 ASN A 2003 ASP A 2005 5 3 HELIX 3 AA3 THR A 2017 GLY A 2021 5 5 HELIX 4 AA4 ASN A 2039 GLY A 2046 1 8 HELIX 5 AA5 GLY A 2057 GLN A 2067 1 11 HELIX 6 AA6 ASP A 2094 ARG A 2098 5 5 HELIX 7 AA7 MET A 2114 ASN A 2118 5 5 HELIX 8 AA8 ASN A 2135 TYR A 2140 1 6 HELIX 9 AA9 PHE A 2170 GLY A 2174 1 5 SHEET 1 AA1 5 GLY A1996 TYR A2001 0 SHEET 2 AA1 5 ALA A2009 ASP A2015 -1 O CYS A2014 N GLY A1996 SHEET 3 AA1 5 TRP A2023 ARG A2029 -1 O TRP A2023 N ASP A2015 SHEET 4 AA1 5 PHE A2054 TRP A2055 -1 O PHE A2054 N ARG A2028 SHEET 5 AA1 5 PHE A2047 GLY A2048 -1 N PHE A2047 O TRP A2055 SHEET 1 AA2 7 GLY A1996 TYR A2001 0 SHEET 2 AA2 7 ALA A2009 ASP A2015 -1 O CYS A2014 N GLY A1996 SHEET 3 AA2 7 TRP A2023 ARG A2029 -1 O TRP A2023 N ASP A2015 SHEET 4 AA2 7 PHE A2181 PRO A2188 -1 O LEU A2186 N ILE A2024 SHEET 5 AA2 7 TYR A2070 ASP A2078 -1 N GLU A2071 O ARG A2187 SHEET 6 AA2 7 GLU A2081 VAL A2092 -1 O ALA A2085 N VAL A2074 SHEET 7 AA2 7 LEU A2101 GLY A2108 -1 O SER A2107 N VAL A2086 SHEET 1 AA3 2 VAL A2152 ASN A2153 0 SHEET 2 AA3 2 ASN A2168 TRP A2169 -1 O ASN A2168 N ASN A2153 SHEET 1 AA4 3 GLU B 316 PRO B 322 0 SHEET 2 AA4 3 LEU B 328 GLU B 333 -1 O LEU B 329 N ASP B 321 SHEET 3 AA4 3 GLY B 372 LEU B 375 -1 O ALA B 373 N VAL B 330 SHEET 1 AA5 4 HIS B 361 LEU B 364 0 SHEET 2 AA5 4 ILE B 343 GLN B 352 -1 N VAL B 348 O PHE B 363 SHEET 3 AA5 4 SER B 383 CYS B 392 -1 O ILE B 391 N GLU B 344 SHEET 4 AA5 4 LEU B 404 ASP B 407 -1 O VAL B 406 N TYR B 384 SSBOND 1 CYS A 1984 CYS A 2014 1555 1555 2.03 SSBOND 2 CYS A 2136 CYS A 2149 1555 1555 2.05 SSBOND 3 CYS B 311 CYS B 392 1555 1555 2.04 LINK OD1 ASP A2128 CA CA A2301 1555 1555 2.67 LINK OD2 ASP A2128 CA CA A2301 1555 1555 2.36 LINK OD1 ASP A2130 CA CA A2301 1555 1555 2.30 LINK O ALA A2132 CA CA A2301 1555 1555 2.48 LINK O THR A2134 CA CA A2301 1555 1555 2.35 LINK CA CA A2301 O HOH A2478 1555 1555 2.36 LINK CA CA A2301 O HOH A2527 1555 1555 2.38 CISPEP 1 ASN A 2148 CYS A 2149 0 2.22 CRYST1 54.707 61.520 92.428 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018279 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016255 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010819 0.00000