HEADER OXIDOREDUCTASE 29-DEC-22 8FO0 TITLE THE STRUCTURE OF A CRYSTALLIZABLE VARIANT OF E. COLI PYRUVATE FORMATE- TITLE 2 LYASE ACTIVATING ENZYME BOUND TO A PARTIALLY CLEAVED SAM MOLECULE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PYRUVATE FORMATE-LYASE 1-ACTIVATING ENZYME; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FORMATE-C-ACETYLTRANSFERASE-ACTIVATING ENZYME 1,PFL- COMPND 5 ACTIVATING ENZYME 1; COMPND 6 EC: 1.97.1.4; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 OTHER_DETAILS: COMPUTATIONALLY REDESIGNED PROTEIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 GENE: PFLA, ACT, B0902, JW0885; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI B; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 37762; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: BL21(DE3)RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET42_SUMO KEYWDS RADICAL SAM, ACTIVASE, PFL, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.D.MOODY,A.J.SAXTON,A.GALAMBAS,C.M.LAWRENCE,J.B.BRODERICK REVDAT 3 22-MAY-24 8FO0 1 REMARK REVDAT 2 21-JUN-23 8FO0 1 JRNL REVDAT 1 24-MAY-23 8FO0 0 JRNL AUTH J.D.MOODY,S.HILL,M.N.LUNDAHL,A.J.SAXTON,A.GALAMBAS, JRNL AUTH 2 W.E.BRODERICK,C.M.LAWRENCE,J.B.BRODERICK JRNL TITL COMPUTATIONAL ENGINEERING OF PREVIOUSLY CRYSTALLIZED JRNL TITL 2 PYRUVATE FORMATE-LYASE ACTIVATING ENZYME REVEALS INSIGHTS JRNL TITL 3 INTO SAM BINDING AND REDUCTIVE CLEAVAGE. JRNL REF J.BIOL.CHEM. V. 299 04791 2023 JRNL REFN ESSN 1083-351X JRNL PMID 37156396 JRNL DOI 10.1016/J.JBC.2023.104791 REMARK 2 REMARK 2 RESOLUTION. 1.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1-4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.26 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 26383 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1294 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.2600 - 3.5200 1.00 2985 137 0.1436 0.1591 REMARK 3 2 3.5200 - 2.7900 1.00 2797 175 0.1662 0.1841 REMARK 3 3 2.7900 - 2.4400 1.00 2807 131 0.1695 0.1992 REMARK 3 4 2.4400 - 2.2200 1.00 2782 150 0.1561 0.1915 REMARK 3 5 2.2200 - 2.0600 1.00 2794 134 0.1691 0.2042 REMARK 3 6 2.0600 - 1.9400 1.00 2755 134 0.1743 0.1813 REMARK 3 7 1.9400 - 1.8400 1.00 2760 151 0.2055 0.2705 REMARK 3 8 1.8400 - 1.7600 1.00 2723 155 0.2220 0.2313 REMARK 3 9 1.7600 - 1.6900 0.97 2686 127 0.2633 0.3029 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.193 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.448 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.46 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.033 2171 REMARK 3 ANGLE : 0.861 2951 REMARK 3 CHIRALITY : 0.292 312 REMARK 3 PLANARITY : 0.005 375 REMARK 3 DIHEDRAL : 16.831 793 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.9504 60.3657 28.5511 REMARK 3 T TENSOR REMARK 3 T11: 0.1422 T22: 0.2058 REMARK 3 T33: 0.1586 T12: -0.0344 REMARK 3 T13: 0.0137 T23: 0.0015 REMARK 3 L TENSOR REMARK 3 L11: 2.0090 L22: 7.1842 REMARK 3 L33: 6.4659 L12: -0.5092 REMARK 3 L13: 1.6302 L23: -2.0112 REMARK 3 S TENSOR REMARK 3 S11: 0.1078 S12: -0.0430 S13: -0.0414 REMARK 3 S21: -0.0195 S22: -0.1257 S23: 0.1296 REMARK 3 S31: 0.4162 S32: -0.1402 S33: 0.0522 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 27 THROUGH 51 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.9283 70.4112 17.7889 REMARK 3 T TENSOR REMARK 3 T11: 0.2428 T22: 0.2554 REMARK 3 T33: 0.2289 T12: 0.0257 REMARK 3 T13: -0.0510 T23: 0.0209 REMARK 3 L TENSOR REMARK 3 L11: 9.4157 L22: 1.6168 REMARK 3 L33: 4.6122 L12: 1.3448 REMARK 3 L13: -6.5463 L23: -1.1052 REMARK 3 S TENSOR REMARK 3 S11: -0.0005 S12: 0.3091 S13: 0.2362 REMARK 3 S21: -0.1970 S22: 0.1110 S23: 0.2646 REMARK 3 S31: -0.0215 S32: -0.3830 S33: -0.1018 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 52 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.2026 57.6791 37.6590 REMARK 3 T TENSOR REMARK 3 T11: 0.3406 T22: 0.2738 REMARK 3 T33: 0.2971 T12: -0.0399 REMARK 3 T13: 0.0788 T23: 0.0071 REMARK 3 L TENSOR REMARK 3 L11: 5.0199 L22: 5.0012 REMARK 3 L33: 3.0995 L12: -4.9753 REMARK 3 L13: -0.5799 L23: 1.0122 REMARK 3 S TENSOR REMARK 3 S11: -0.5180 S12: -0.4314 S13: -0.2346 REMARK 3 S21: 0.8012 S22: 0.4870 S23: 0.4243 REMARK 3 S31: 0.3977 S32: -0.3486 S33: 0.0056 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 66 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.2206 64.0235 34.9337 REMARK 3 T TENSOR REMARK 3 T11: 0.1119 T22: 0.1329 REMARK 3 T33: 0.1607 T12: -0.0287 REMARK 3 T13: -0.0200 T23: -0.0218 REMARK 3 L TENSOR REMARK 3 L11: 4.2833 L22: 6.0171 REMARK 3 L33: 6.2812 L12: -2.1313 REMARK 3 L13: 1.2611 L23: -1.2774 REMARK 3 S TENSOR REMARK 3 S11: 0.0106 S12: -0.1471 S13: -0.0665 REMARK 3 S21: 0.3180 S22: 0.0669 S23: -0.0916 REMARK 3 S31: 0.2559 S32: -0.0208 S33: -0.0426 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 97 THROUGH 122 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.0738 72.5264 32.2431 REMARK 3 T TENSOR REMARK 3 T11: 0.1601 T22: 0.1751 REMARK 3 T33: 0.2352 T12: 0.0472 REMARK 3 T13: -0.0422 T23: -0.0314 REMARK 3 L TENSOR REMARK 3 L11: 2.6832 L22: 4.5055 REMARK 3 L33: 7.4231 L12: 0.6819 REMARK 3 L13: -1.1942 L23: -0.3992 REMARK 3 S TENSOR REMARK 3 S11: 0.0768 S12: -0.0433 S13: 0.3147 REMARK 3 S21: 0.0600 S22: 0.0057 S23: 0.0616 REMARK 3 S31: -0.5938 S32: -0.1298 S33: -0.1351 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 123 THROUGH 187 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.6724 69.9571 19.0528 REMARK 3 T TENSOR REMARK 3 T11: 0.1717 T22: 0.2063 REMARK 3 T33: 0.2691 T12: -0.0111 REMARK 3 T13: 0.0200 T23: -0.0522 REMARK 3 L TENSOR REMARK 3 L11: 1.9224 L22: 1.0965 REMARK 3 L33: 6.3131 L12: -0.1209 REMARK 3 L13: -1.0465 L23: 0.4447 REMARK 3 S TENSOR REMARK 3 S11: -0.0090 S12: -0.0358 S13: 0.1552 REMARK 3 S21: -0.1196 S22: 0.1564 S23: -0.2671 REMARK 3 S31: -0.2653 S32: 0.4371 S33: -0.1396 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 188 THROUGH 211 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.5546 62.1886 16.1694 REMARK 3 T TENSOR REMARK 3 T11: 0.2895 T22: 0.1913 REMARK 3 T33: 0.1812 T12: -0.0421 REMARK 3 T13: 0.0730 T23: 0.0079 REMARK 3 L TENSOR REMARK 3 L11: 8.5026 L22: 2.9447 REMARK 3 L33: 6.4073 L12: -1.6004 REMARK 3 L13: 3.7545 L23: 0.3111 REMARK 3 S TENSOR REMARK 3 S11: 0.1264 S12: 0.0149 S13: -0.2322 REMARK 3 S21: -0.3902 S22: 0.0784 S23: -0.0677 REMARK 3 S31: 0.3732 S32: -0.0068 S33: -0.2433 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 212 THROUGH 225 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.5638 63.1500 3.1324 REMARK 3 T TENSOR REMARK 3 T11: 0.4909 T22: 0.5618 REMARK 3 T33: 0.4289 T12: 0.0359 REMARK 3 T13: -0.0559 T23: -0.1307 REMARK 3 L TENSOR REMARK 3 L11: 3.0663 L22: 7.3945 REMARK 3 L33: 4.9732 L12: -4.5585 REMARK 3 L13: -1.0771 L23: 1.1240 REMARK 3 S TENSOR REMARK 3 S11: 0.7412 S12: 1.4181 S13: -0.5601 REMARK 3 S21: -0.9464 S22: -1.0210 S23: 0.6768 REMARK 3 S31: -0.5512 S32: -0.3457 S33: 0.2337 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 226 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.9847 57.3431 15.4237 REMARK 3 T TENSOR REMARK 3 T11: 0.2811 T22: 0.4562 REMARK 3 T33: 0.3744 T12: 0.1142 REMARK 3 T13: 0.0472 T23: -0.0911 REMARK 3 L TENSOR REMARK 3 L11: 5.1624 L22: 6.0305 REMARK 3 L33: 3.8336 L12: 2.9253 REMARK 3 L13: 4.3939 L23: 2.9244 REMARK 3 S TENSOR REMARK 3 S11: -0.2118 S12: -0.3700 S13: -0.3555 REMARK 3 S21: 0.1851 S22: 0.3043 S23: -0.4134 REMARK 3 S31: 0.7322 S32: 0.6572 S33: -0.1039 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE CLEAVED AND UN-CLEAVED SAM MOLECULE REMARK 3 WERE REFINED SEPARATELY AND LATER COMBINED AS ALTERNATIVE REMARK 3 CONFORMATIONS OF A SINGLE MOLECULE. REMARK 4 REMARK 4 8FO0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JAN-23. REMARK 100 THE DEPOSITION ID IS D_1000271069. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.542 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26396 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.690 REMARK 200 RESOLUTION RANGE LOW (A) : 34.260 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 11.70 REMARK 200 R MERGE (I) : 0.06465 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.7600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 8.50 REMARK 200 R MERGE FOR SHELL (I) : 0.68300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: ROD-LIKE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4 UL OF PROTEIN (10 MG/ML PFL-AE-CCR8 REMARK 280 IN 25 MM TRIS, 500 200 MM KCL, WITH 3.5 MM SAM, 5.0 MM 7-MER REMARK 280 RVSAYAV PEPTIDE, 0.13% GLYCEROL, AND 2.5 MM DTT) ADDED TO 1 UL REMARK 280 OF CRYSTALLIZATION RESERVOIR SOLUTION (30% PEG 3350, 100 MM TRIS, REMARK 280 PH 8.5) IN HANGING DROP FORMAT OVER A RESERVOIR CONTAINING OF REMARK 280 50 UL OF CRYSTALLIZATION RESERVOIR SOLUTION., VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.29000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.24200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.27550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.24200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.29000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.27550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 113 OD1 OD2 REMARK 470 GLU A 121 CD OE1 OE2 REMARK 470 GLU A 158 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 32 43.92 -140.09 REMARK 500 SER A 76 -156.15 -131.32 REMARK 500 GLN A 132 118.28 -179.83 REMARK 500 TRP A 173 -42.98 -130.17 REMARK 500 SER A 174 27.21 -142.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 301 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 29 SG REMARK 620 2 SF4 A 301 S1 115.8 REMARK 620 3 SF4 A 301 S2 124.6 104.1 REMARK 620 4 SF4 A 301 S3 102.7 104.0 102.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 301 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 33 SG REMARK 620 2 SF4 A 301 S2 111.0 REMARK 620 3 SF4 A 301 S3 120.6 103.8 REMARK 620 4 SF4 A 301 S4 111.1 105.3 103.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 301 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 36 SG REMARK 620 2 SF4 A 301 S1 119.2 REMARK 620 3 SF4 A 301 S2 108.0 104.7 REMARK 620 4 SF4 A 301 S4 114.4 104.1 105.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 303 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 104 OD1 REMARK 620 2 THR A 105 O 116.2 REMARK 620 3 MET A 127 O 76.8 67.2 REMARK 620 4 ASP A 129 OD1 127.4 115.5 133.6 REMARK 620 5 SAM A 302 OXT 108.8 77.0 141.7 74.2 REMARK 620 6 SAM A 302 OXT 109.0 79.0 143.9 72.2 2.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 301 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SAM A 302 N REMARK 620 2 SF4 A 301 S1 83.4 REMARK 620 3 SF4 A 301 S3 94.1 103.6 REMARK 620 4 SF4 A 301 S4 160.8 102.0 102.4 REMARK 620 5 SAM A 302 N 3.5 84.3 97.1 157.4 REMARK 620 6 SAM A 302 O 70.8 151.6 90.1 99.1 69.2 REMARK 620 7 SAM A 302 O 72.2 153.4 88.9 98.0 70.7 1.8 REMARK 620 N 1 2 3 4 5 6 DBREF 8FO0 A 1 245 UNP P0A9N4 PFLA_ECOLI 2 246 SEQADV 8FO0 GLU A 1 UNP P0A9N4 SER 2 ENGINEERED MUTATION SEQADV 8FO0 LYS A 53 UNP P0A9N4 GLU 54 ENGINEERED MUTATION SEQADV 8FO0 GLU A 93 UNP P0A9N4 ALA 94 ENGINEERED MUTATION SEQADV 8FO0 HIS A 111 UNP P0A9N4 ARG 112 ENGINEERED MUTATION SEQADV 8FO0 LYS A 139 UNP P0A9N4 GLN 140 ENGINEERED MUTATION SEQADV 8FO0 ARG A 151 UNP P0A9N4 GLU 152 ENGINEERED MUTATION SEQADV 8FO0 GLN A 154 UNP P0A9N4 LYS 155 ENGINEERED MUTATION SEQADV 8FO0 GLU A 158 UNP P0A9N4 ASN 159 ENGINEERED MUTATION SEQADV 8FO0 GLU A 222 UNP P0A9N4 LYS 223 ENGINEERED MUTATION SEQADV 8FO0 ARG A 225 UNP P0A9N4 LYS 226 ENGINEERED MUTATION SEQADV 8FO0 ALA A 226 UNP P0A9N4 LYS 227 ENGINEERED MUTATION SEQADV 8FO0 ARG A 230 UNP P0A9N4 GLU 231 ENGINEERED MUTATION SEQRES 1 A 245 GLU VAL ILE GLY ARG ILE HIS SER PHE GLU SER CYS GLY SEQRES 2 A 245 THR VAL ASP GLY PRO GLY ILE ARG PHE ILE THR PHE PHE SEQRES 3 A 245 GLN GLY CYS LEU MET ARG CYS LEU TYR CYS HIS ASN ARG SEQRES 4 A 245 ASP THR TRP ASP THR HIS GLY GLY LYS GLU VAL THR VAL SEQRES 5 A 245 LYS ASP LEU MET LYS GLU VAL VAL THR TYR ARG HIS PHE SEQRES 6 A 245 MET ASN ALA SER GLY GLY GLY VAL THR ALA SER GLY GLY SEQRES 7 A 245 GLU ALA ILE LEU GLN ALA GLU PHE VAL ARG ASP TRP PHE SEQRES 8 A 245 ARG GLU CYS LYS LYS GLU GLY ILE HIS THR CYS LEU ASP SEQRES 9 A 245 THR ASN GLY PHE VAL ARG HIS TYR ASP PRO VAL ILE ASP SEQRES 10 A 245 GLU LEU LEU GLU VAL THR ASP LEU VAL MET LEU ASP LEU SEQRES 11 A 245 LYS GLN MET ASN ASP GLU ILE HIS LYS ASN LEU VAL GLY SEQRES 12 A 245 VAL SER ASN HIS ARG THR LEU ARG PHE ALA GLN TYR LEU SEQRES 13 A 245 ALA GLU LYS ASN VAL LYS VAL TRP ILE ARG TYR VAL VAL SEQRES 14 A 245 VAL PRO GLY TRP SER ASP ASP ASP ASP SER ALA HIS ARG SEQRES 15 A 245 LEU GLY GLU PHE THR ARG ASP MET GLY ASN VAL GLU LYS SEQRES 16 A 245 ILE GLU LEU LEU PRO TYR HIS GLU LEU GLY LYS HIS LYS SEQRES 17 A 245 TRP VAL ALA MET GLY GLU GLU TYR LYS LEU ASP GLY VAL SEQRES 18 A 245 GLU PRO PRO ARG ALA GLU THR MET ARG ARG VAL LYS GLY SEQRES 19 A 245 ILE LEU GLU GLN TYR GLY HIS LYS VAL MET PHE HET SF4 A 301 8 HET SAM A 302 98 HET K A 303 1 HETNAM SF4 IRON/SULFUR CLUSTER HETNAM SAM S-ADENOSYLMETHIONINE HETNAM K POTASSIUM ION FORMUL 2 SF4 FE4 S4 FORMUL 3 SAM C15 H22 N6 O5 S FORMUL 4 K K 1+ FORMUL 5 HOH *137(H2 O) HELIX 1 AA1 ASN A 38 TRP A 42 5 5 HELIX 2 AA2 VAL A 52 THR A 61 1 10 HELIX 3 AA3 TYR A 62 MET A 66 5 5 HELIX 4 AA4 GLU A 79 LEU A 82 5 4 HELIX 5 AA5 GLN A 83 GLU A 97 1 15 HELIX 6 AA6 ASP A 113 VAL A 122 1 10 HELIX 7 AA7 ASN A 134 GLY A 143 1 10 HELIX 8 AA8 ASN A 146 LYS A 159 1 14 HELIX 9 AA9 ASP A 176 ARG A 188 1 13 HELIX 10 AB1 GLY A 205 MET A 212 1 8 HELIX 11 AB2 ARG A 225 GLN A 238 1 14 SHEET 1 AA1 9 LYS A 48 THR A 51 0 SHEET 2 AA1 9 ILE A 3 GLY A 13 -1 N GLY A 4 O VAL A 50 SHEET 3 AA1 9 ILE A 20 PHE A 26 -1 O ARG A 21 N CYS A 12 SHEET 4 AA1 9 GLY A 72 SER A 76 1 O SER A 76 N THR A 24 SHEET 5 AA1 9 THR A 101 THR A 105 1 O ASP A 104 N ALA A 75 SHEET 6 AA1 9 LEU A 125 ASP A 129 1 O MET A 127 N LEU A 103 SHEET 7 AA1 9 VAL A 163 VAL A 169 1 O ARG A 166 N LEU A 128 SHEET 8 AA1 9 VAL A 193 PRO A 200 1 O GLU A 197 N ILE A 165 SHEET 9 AA1 9 VAL A 243 MET A 244 1 O MET A 244 N LEU A 198 LINK SG CYS A 29 FE4 SF4 A 301 1555 1555 2.25 LINK SG CYS A 33 FE1 SF4 A 301 1555 1555 2.27 LINK SG CYS A 36 FE3 SF4 A 301 1555 1555 2.24 LINK OD1 ASP A 104 K K A 303 1555 1555 2.41 LINK O THR A 105 K K A 303 1555 1555 2.98 LINK O MET A 127 K K A 303 1555 1555 3.09 LINK OD1 ASP A 129 K K A 303 1555 1555 2.46 LINK FE2 SF4 A 301 N ASAM A 302 1555 1555 2.50 LINK FE2 SF4 A 301 N BSAM A 302 1555 1555 2.37 LINK FE2 SF4 A 301 O ASAM A 302 1555 1555 2.42 LINK FE2 SF4 A 301 O BSAM A 302 1555 1555 2.39 LINK OXTASAM A 302 K K A 303 1555 1555 2.77 LINK OXTBSAM A 302 K K A 303 1555 1555 2.64 CISPEP 1 GLY A 77 GLY A 78 0 9.27 CRYST1 46.580 58.551 84.484 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021468 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017079 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011837 0.00000