HEADER IMMUNE SYSTEM 29-DEC-22 8FO4 TITLE STRUCTURE OF FULL-LENGTH AMYLOIDOGENIC IMMUNOGLOBULIN LIGHT CHAIN H9 TITLE 2 IN COMPLEX WITH 6-METHYL-2-(2-((1E,2E)-3-(2-NITROPHENYL)ALLYLIDENE) TITLE 3 HYDRAZINEYL)PYRIMIDIN-4-OL COMPND MOL_ID: 1; COMPND 2 MOLECULE: H9 IMMUNOGLOBULIN LIGHT CHAIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LIGHT CHAIN, AMYLOIDOSIS, STABILIZER, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR N.L.YAN,I.A.WILSON,J.W.KELLY REVDAT 2 25-OCT-23 8FO4 1 REMARK REVDAT 1 24-MAY-23 8FO4 0 JRNL AUTH N.L.YAN,I.A.WILSON,J.W.KELLY JRNL TITL CRYSTAL STRUCTURES OF DIARYL HYDRAZONE AND SULFONE JRNL TITL 2 STABILIZERS IN COMPLEX WITH AN AMYLOIDOGENIC LIGHT CHAIN JRNL TITL 3 REVEAL AN ALTERNATE LIGAND-BINDING CAVITY JRNL REF ISR.J.CHEM. 2023 JRNL REFN ISSN 0021-2148 JRNL DOI 10.1002/IJCH.202300002 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 58568 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3085 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4011 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.39 REMARK 3 BIN R VALUE (WORKING SET) : 0.2890 REMARK 3 BIN FREE R VALUE SET COUNT : 205 REMARK 3 BIN FREE R VALUE : 0.3130 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6202 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 707 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.05000 REMARK 3 B22 (A**2) : -1.87000 REMARK 3 B33 (A**2) : 0.38000 REMARK 3 B12 (A**2) : 1.44000 REMARK 3 B13 (A**2) : 1.83000 REMARK 3 B23 (A**2) : -0.46000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.185 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.170 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6544 ; 0.011 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 5675 ; 0.037 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8954 ; 1.576 ; 1.647 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13349 ; 2.446 ; 1.578 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 862 ; 7.625 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 243 ;37.452 ;24.568 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 966 ;15.151 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;14.372 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 876 ; 0.067 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7761 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1234 ; 0.010 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3418 ; 3.101 ; 3.431 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3419 ; 3.100 ; 3.432 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4282 ; 4.547 ; 5.125 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4281 ; 4.547 ; 5.126 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3126 ; 3.354 ; 3.687 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3119 ; 3.325 ; 3.685 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4657 ; 5.071 ; 5.369 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7025 ; 7.522 ;41.105 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6849 ; 7.417 ;40.608 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8FO4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JAN-23. REMARK 100 THE DEPOSITION ID IS D_1000271076. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-APR-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61668 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 48.580 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08300 REMARK 200 FOR THE DATA SET : 8.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.53700 REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 5M6A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350, 0.2 M POTASSIUM PHOSPHATE REMARK 280 MONOBASIC, 4 DEGREES C, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 94 REMARK 465 GLY A 95 REMARK 465 ASP A 96 REMARK 465 ASN A 97 REMARK 465 CYS A 215 REMARK 465 SER A 216 REMARK 465 GLN B 1 REMARK 465 CYS B 215 REMARK 465 SER B 216 REMARK 465 GLY C 95 REMARK 465 ASP C 96 REMARK 465 ASN C 97 REMARK 465 GLU C 214 REMARK 465 CYS C 215 REMARK 465 SER C 216 REMARK 465 GLN D 1 REMARK 465 SER D 2 REMARK 465 GLU D 214 REMARK 465 CYS D 215 REMARK 465 SER D 216 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 28 -88.64 -133.57 REMARK 500 VAL A 53 -46.65 73.68 REMARK 500 ASP A 155 -120.26 61.71 REMARK 500 LYS A 160 -90.93 -109.38 REMARK 500 ASP B 28 -93.94 -115.53 REMARK 500 VAL B 53 -48.56 72.24 REMARK 500 ASP B 96 -123.97 -112.62 REMARK 500 ASN B 98 47.87 -82.05 REMARK 500 ASP B 155 -123.76 55.32 REMARK 500 ASP C 28 -90.75 -138.62 REMARK 500 ASP C 33 50.52 -96.48 REMARK 500 VAL C 53 -46.21 73.84 REMARK 500 TYR C 93 68.66 -109.76 REMARK 500 ASP C 155 -109.48 60.08 REMARK 500 ASP D 28 -87.69 -120.56 REMARK 500 ASP D 33 48.00 -101.71 REMARK 500 VAL D 53 -44.24 78.51 REMARK 500 SER D 54 -14.78 -141.84 REMARK 500 ASP D 96 27.90 83.04 REMARK 500 ASN D 97 49.48 39.64 REMARK 500 ASP D 155 -124.10 57.96 REMARK 500 REMARK 500 REMARK: NULL DBREF 8FO4 A 1 216 PDB 8FO4 8FO4 1 216 DBREF 8FO4 B 1 216 PDB 8FO4 8FO4 1 216 DBREF 8FO4 C 1 216 PDB 8FO4 8FO4 1 216 DBREF 8FO4 D 1 216 PDB 8FO4 8FO4 1 216 SEQRES 1 A 216 GLN SER ALA LEU THR GLN PRO PRO SER ALA SER GLY SER SEQRES 2 A 216 PRO GLY GLN SER VAL THR ILE SER CYS THR GLY THR SER SEQRES 3 A 216 SER ASP VAL GLY GLY SER ASP SER VAL SER TRP TYR GLN SEQRES 4 A 216 GLN HIS PRO GLY LYS ALA PRO LYS LEU ILE ILE TYR GLU SEQRES 5 A 216 VAL SER GLN ARG PRO SER GLY VAL PRO ASN ARG PHE SER SEQRES 6 A 216 GLY SER LYS SER GLY ASN THR ALA SER LEU THR VAL SER SEQRES 7 A 216 GLY LEU GLN ALA GLU ASP ASP ALA ASP TYR TYR CYS SER SEQRES 8 A 216 SER TYR GLY GLY ASP ASN ASN LEU PHE PHE GLY GLY GLY SEQRES 9 A 216 THR LYS VAL THR VAL LEU GLY GLN PRO LYS ALA ALA PRO SEQRES 10 A 216 SER VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN SEQRES 11 A 216 ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE SEQRES 12 A 216 TYR PRO GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SER SEQRES 13 A 216 SER PRO VAL LYS ALA GLY VAL GLU THR THR THR PRO SER SEQRES 14 A 216 LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SEQRES 15 A 216 SER LEU THR PRO GLU GLN TRP LYS SER HIS ARG SER TYR SEQRES 16 A 216 SER CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS SEQRES 17 A 216 THR VAL ALA PRO THR GLU CYS SER SEQRES 1 B 216 GLN SER ALA LEU THR GLN PRO PRO SER ALA SER GLY SER SEQRES 2 B 216 PRO GLY GLN SER VAL THR ILE SER CYS THR GLY THR SER SEQRES 3 B 216 SER ASP VAL GLY GLY SER ASP SER VAL SER TRP TYR GLN SEQRES 4 B 216 GLN HIS PRO GLY LYS ALA PRO LYS LEU ILE ILE TYR GLU SEQRES 5 B 216 VAL SER GLN ARG PRO SER GLY VAL PRO ASN ARG PHE SER SEQRES 6 B 216 GLY SER LYS SER GLY ASN THR ALA SER LEU THR VAL SER SEQRES 7 B 216 GLY LEU GLN ALA GLU ASP ASP ALA ASP TYR TYR CYS SER SEQRES 8 B 216 SER TYR GLY GLY ASP ASN ASN LEU PHE PHE GLY GLY GLY SEQRES 9 B 216 THR LYS VAL THR VAL LEU GLY GLN PRO LYS ALA ALA PRO SEQRES 10 B 216 SER VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN SEQRES 11 B 216 ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE SEQRES 12 B 216 TYR PRO GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SER SEQRES 13 B 216 SER PRO VAL LYS ALA GLY VAL GLU THR THR THR PRO SER SEQRES 14 B 216 LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SEQRES 15 B 216 SER LEU THR PRO GLU GLN TRP LYS SER HIS ARG SER TYR SEQRES 16 B 216 SER CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS SEQRES 17 B 216 THR VAL ALA PRO THR GLU CYS SER SEQRES 1 C 216 GLN SER ALA LEU THR GLN PRO PRO SER ALA SER GLY SER SEQRES 2 C 216 PRO GLY GLN SER VAL THR ILE SER CYS THR GLY THR SER SEQRES 3 C 216 SER ASP VAL GLY GLY SER ASP SER VAL SER TRP TYR GLN SEQRES 4 C 216 GLN HIS PRO GLY LYS ALA PRO LYS LEU ILE ILE TYR GLU SEQRES 5 C 216 VAL SER GLN ARG PRO SER GLY VAL PRO ASN ARG PHE SER SEQRES 6 C 216 GLY SER LYS SER GLY ASN THR ALA SER LEU THR VAL SER SEQRES 7 C 216 GLY LEU GLN ALA GLU ASP ASP ALA ASP TYR TYR CYS SER SEQRES 8 C 216 SER TYR GLY GLY ASP ASN ASN LEU PHE PHE GLY GLY GLY SEQRES 9 C 216 THR LYS VAL THR VAL LEU GLY GLN PRO LYS ALA ALA PRO SEQRES 10 C 216 SER VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN SEQRES 11 C 216 ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE SEQRES 12 C 216 TYR PRO GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SER SEQRES 13 C 216 SER PRO VAL LYS ALA GLY VAL GLU THR THR THR PRO SER SEQRES 14 C 216 LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SEQRES 15 C 216 SER LEU THR PRO GLU GLN TRP LYS SER HIS ARG SER TYR SEQRES 16 C 216 SER CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS SEQRES 17 C 216 THR VAL ALA PRO THR GLU CYS SER SEQRES 1 D 216 GLN SER ALA LEU THR GLN PRO PRO SER ALA SER GLY SER SEQRES 2 D 216 PRO GLY GLN SER VAL THR ILE SER CYS THR GLY THR SER SEQRES 3 D 216 SER ASP VAL GLY GLY SER ASP SER VAL SER TRP TYR GLN SEQRES 4 D 216 GLN HIS PRO GLY LYS ALA PRO LYS LEU ILE ILE TYR GLU SEQRES 5 D 216 VAL SER GLN ARG PRO SER GLY VAL PRO ASN ARG PHE SER SEQRES 6 D 216 GLY SER LYS SER GLY ASN THR ALA SER LEU THR VAL SER SEQRES 7 D 216 GLY LEU GLN ALA GLU ASP ASP ALA ASP TYR TYR CYS SER SEQRES 8 D 216 SER TYR GLY GLY ASP ASN ASN LEU PHE PHE GLY GLY GLY SEQRES 9 D 216 THR LYS VAL THR VAL LEU GLY GLN PRO LYS ALA ALA PRO SEQRES 10 D 216 SER VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN SEQRES 11 D 216 ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE SEQRES 12 D 216 TYR PRO GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SER SEQRES 13 D 216 SER PRO VAL LYS ALA GLY VAL GLU THR THR THR PRO SER SEQRES 14 D 216 LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SEQRES 15 D 216 SER LEU THR PRO GLU GLN TRP LYS SER HIS ARG SER TYR SEQRES 16 D 216 SER CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS SEQRES 17 D 216 THR VAL ALA PRO THR GLU CYS SER HET Y4Q A 301 44 HET PO4 A 302 5 HET PO4 C 301 5 HET Y4Q D 301 44 HETNAM Y4Q 6-METHYL-2-{2-[(1E)-3-(2-NITROPHENYL)PROP-1-EN-1- HETNAM 2 Y4Q YL]HYDRAZINYL}PYRIMIDIN-4(5H)-ONE HETNAM PO4 PHOSPHATE ION FORMUL 5 Y4Q 2(C14 H15 N5 O3) FORMUL 6 PO4 2(O4 P 3-) FORMUL 9 HOH *707(H2 O) HELIX 1 AA1 GLN A 81 ASP A 85 5 5 HELIX 2 AA2 SER A 125 GLN A 130 1 6 HELIX 3 AA3 THR A 185 SER A 191 1 7 HELIX 4 AA4 ASP B 28 SER B 32 5 5 HELIX 5 AA5 GLN B 81 ASP B 85 5 5 HELIX 6 AA6 SER B 125 ALA B 131 1 7 HELIX 7 AA7 THR B 185 HIS B 192 1 8 HELIX 8 AA8 GLN C 81 ASP C 85 5 5 HELIX 9 AA9 SER C 125 GLN C 130 1 6 HELIX 10 AB1 THR C 185 SER C 191 1 7 HELIX 11 AB2 GLN D 81 ASP D 85 5 5 HELIX 12 AB3 SER D 125 ALA D 131 1 7 HELIX 13 AB4 THR D 185 HIS D 192 1 8 SHEET 1 AA1 5 SER A 9 GLY A 12 0 SHEET 2 AA1 5 THR A 105 VAL A 109 1 O THR A 108 N ALA A 10 SHEET 3 AA1 5 ALA A 86 SER A 92 -1 N TYR A 88 O THR A 105 SHEET 4 AA1 5 VAL A 35 GLN A 40 -1 N GLN A 40 O ASP A 87 SHEET 5 AA1 5 LYS A 47 ILE A 50 -1 O LYS A 47 N GLN A 39 SHEET 1 AA2 4 SER A 9 GLY A 12 0 SHEET 2 AA2 4 THR A 105 VAL A 109 1 O THR A 108 N ALA A 10 SHEET 3 AA2 4 ALA A 86 SER A 92 -1 N TYR A 88 O THR A 105 SHEET 4 AA2 4 PHE A 100 PHE A 101 -1 O PHE A 100 N SER A 92 SHEET 1 AA3 3 VAL A 18 THR A 23 0 SHEET 2 AA3 3 THR A 72 VAL A 77 -1 O VAL A 77 N VAL A 18 SHEET 3 AA3 3 PHE A 64 SER A 69 -1 N SER A 65 O THR A 76 SHEET 1 AA4 4 SER A 118 PHE A 122 0 SHEET 2 AA4 4 ALA A 134 PHE A 143 -1 O VAL A 137 N PHE A 122 SHEET 3 AA4 4 TYR A 176 LEU A 184 -1 O SER A 180 N CYS A 138 SHEET 4 AA4 4 VAL A 163 THR A 165 -1 N GLU A 164 O TYR A 181 SHEET 1 AA5 4 SER A 118 PHE A 122 0 SHEET 2 AA5 4 ALA A 134 PHE A 143 -1 O VAL A 137 N PHE A 122 SHEET 3 AA5 4 TYR A 176 LEU A 184 -1 O SER A 180 N CYS A 138 SHEET 4 AA5 4 SER A 169 LYS A 170 -1 N SER A 169 O ALA A 177 SHEET 1 AA6 4 SER A 157 PRO A 158 0 SHEET 2 AA6 4 THR A 149 ALA A 154 -1 N ALA A 154 O SER A 157 SHEET 3 AA6 4 TYR A 195 HIS A 201 -1 O GLN A 198 N ALA A 151 SHEET 4 AA6 4 SER A 204 VAL A 210 -1 O VAL A 206 N VAL A 199 SHEET 1 AA7 5 SER B 9 GLY B 12 0 SHEET 2 AA7 5 THR B 105 VAL B 109 1 O THR B 108 N ALA B 10 SHEET 3 AA7 5 ALA B 86 TYR B 93 -1 N ALA B 86 O VAL B 107 SHEET 4 AA7 5 VAL B 35 GLN B 40 -1 N GLN B 40 O ASP B 87 SHEET 5 AA7 5 LYS B 47 ILE B 50 -1 O ILE B 49 N TRP B 37 SHEET 1 AA8 4 SER B 9 GLY B 12 0 SHEET 2 AA8 4 THR B 105 VAL B 109 1 O THR B 108 N ALA B 10 SHEET 3 AA8 4 ALA B 86 TYR B 93 -1 N ALA B 86 O VAL B 107 SHEET 4 AA8 4 LEU B 99 PHE B 101 -1 O PHE B 100 N SER B 92 SHEET 1 AA9 3 VAL B 18 THR B 23 0 SHEET 2 AA9 3 THR B 72 VAL B 77 -1 O LEU B 75 N ILE B 20 SHEET 3 AA9 3 PHE B 64 SER B 69 -1 N SER B 65 O THR B 76 SHEET 1 AB1 4 SER B 118 PHE B 122 0 SHEET 2 AB1 4 ALA B 134 PHE B 143 -1 O VAL B 137 N PHE B 122 SHEET 3 AB1 4 TYR B 176 LEU B 184 -1 O ALA B 178 N ILE B 140 SHEET 4 AB1 4 VAL B 163 THR B 165 -1 N GLU B 164 O TYR B 181 SHEET 1 AB2 4 SER B 118 PHE B 122 0 SHEET 2 AB2 4 ALA B 134 PHE B 143 -1 O VAL B 137 N PHE B 122 SHEET 3 AB2 4 TYR B 176 LEU B 184 -1 O ALA B 178 N ILE B 140 SHEET 4 AB2 4 SER B 169 LYS B 170 -1 N SER B 169 O ALA B 177 SHEET 1 AB3 4 SER B 157 VAL B 159 0 SHEET 2 AB3 4 THR B 149 ALA B 154 -1 N TRP B 152 O VAL B 159 SHEET 3 AB3 4 TYR B 195 HIS B 201 -1 O GLN B 198 N ALA B 151 SHEET 4 AB3 4 SER B 204 VAL B 210 -1 O VAL B 206 N VAL B 199 SHEET 1 AB4 5 SER C 9 GLY C 12 0 SHEET 2 AB4 5 THR C 105 VAL C 109 1 O THR C 108 N ALA C 10 SHEET 3 AB4 5 ALA C 86 SER C 92 -1 N ALA C 86 O VAL C 107 SHEET 4 AB4 5 VAL C 35 GLN C 40 -1 N GLN C 40 O ASP C 87 SHEET 5 AB4 5 LYS C 47 ILE C 50 -1 O ILE C 50 N TRP C 37 SHEET 1 AB5 4 SER C 9 GLY C 12 0 SHEET 2 AB5 4 THR C 105 VAL C 109 1 O THR C 108 N ALA C 10 SHEET 3 AB5 4 ALA C 86 SER C 92 -1 N ALA C 86 O VAL C 107 SHEET 4 AB5 4 PHE C 100 PHE C 101 -1 O PHE C 100 N SER C 92 SHEET 1 AB6 3 VAL C 18 THR C 23 0 SHEET 2 AB6 3 THR C 72 VAL C 77 -1 O LEU C 75 N ILE C 20 SHEET 3 AB6 3 PHE C 64 SER C 69 -1 N SER C 67 O SER C 74 SHEET 1 AB7 4 SER C 118 PHE C 122 0 SHEET 2 AB7 4 ALA C 134 PHE C 143 -1 O LEU C 139 N THR C 120 SHEET 3 AB7 4 TYR C 176 LEU C 184 -1 O ALA C 178 N ILE C 140 SHEET 4 AB7 4 VAL C 163 THR C 165 -1 N GLU C 164 O TYR C 181 SHEET 1 AB8 4 SER C 118 PHE C 122 0 SHEET 2 AB8 4 ALA C 134 PHE C 143 -1 O LEU C 139 N THR C 120 SHEET 3 AB8 4 TYR C 176 LEU C 184 -1 O ALA C 178 N ILE C 140 SHEET 4 AB8 4 SER C 169 LYS C 170 -1 N SER C 169 O ALA C 177 SHEET 1 AB9 4 SER C 157 VAL C 159 0 SHEET 2 AB9 4 THR C 149 ALA C 154 -1 N ALA C 154 O SER C 157 SHEET 3 AB9 4 TYR C 195 HIS C 201 -1 O GLN C 198 N ALA C 151 SHEET 4 AB9 4 SER C 204 VAL C 210 -1 O VAL C 206 N VAL C 199 SHEET 1 AC1 5 SER D 9 GLY D 12 0 SHEET 2 AC1 5 THR D 105 VAL D 109 1 O THR D 108 N ALA D 10 SHEET 3 AC1 5 ALA D 86 TYR D 93 -1 N ALA D 86 O VAL D 107 SHEET 4 AC1 5 VAL D 35 GLN D 40 -1 N GLN D 40 O ASP D 87 SHEET 5 AC1 5 LYS D 47 ILE D 50 -1 O LYS D 47 N GLN D 39 SHEET 1 AC2 4 SER D 9 GLY D 12 0 SHEET 2 AC2 4 THR D 105 VAL D 109 1 O THR D 108 N ALA D 10 SHEET 3 AC2 4 ALA D 86 TYR D 93 -1 N ALA D 86 O VAL D 107 SHEET 4 AC2 4 LEU D 99 PHE D 101 -1 O PHE D 100 N SER D 92 SHEET 1 AC3 3 VAL D 18 THR D 23 0 SHEET 2 AC3 3 THR D 72 VAL D 77 -1 O VAL D 77 N VAL D 18 SHEET 3 AC3 3 PHE D 64 SER D 69 -1 N SER D 65 O THR D 76 SHEET 1 AC4 4 SER D 118 PHE D 122 0 SHEET 2 AC4 4 LEU D 136 PHE D 143 -1 O LEU D 139 N THR D 120 SHEET 3 AC4 4 TYR D 176 LEU D 182 -1 O SER D 180 N CYS D 138 SHEET 4 AC4 4 VAL D 163 THR D 165 -1 N GLU D 164 O TYR D 181 SHEET 1 AC5 4 SER D 118 PHE D 122 0 SHEET 2 AC5 4 LEU D 136 PHE D 143 -1 O LEU D 139 N THR D 120 SHEET 3 AC5 4 TYR D 176 LEU D 182 -1 O SER D 180 N CYS D 138 SHEET 4 AC5 4 SER D 169 LYS D 170 -1 N SER D 169 O ALA D 177 SHEET 1 AC6 4 SER D 157 VAL D 159 0 SHEET 2 AC6 4 THR D 149 ALA D 154 -1 N ALA D 154 O SER D 157 SHEET 3 AC6 4 TYR D 195 HIS D 201 -1 O GLN D 198 N ALA D 151 SHEET 4 AC6 4 SER D 204 VAL D 210 -1 O VAL D 206 N VAL D 199 SSBOND 1 CYS A 22 CYS A 90 1555 1555 2.02 SSBOND 2 CYS A 138 CYS A 197 1555 1555 2.11 SSBOND 3 CYS B 22 CYS B 90 1555 1555 2.07 SSBOND 4 CYS B 138 CYS B 197 1555 1555 2.15 SSBOND 5 CYS C 22 CYS C 90 1555 1555 2.08 SSBOND 6 CYS C 138 CYS C 197 1555 1555 2.12 SSBOND 7 CYS D 22 CYS D 90 1555 1555 2.04 SSBOND 8 CYS D 138 CYS D 197 1555 1555 2.12 CISPEP 1 TYR A 144 PRO A 145 0 -4.99 CISPEP 2 TYR B 144 PRO B 145 0 -7.17 CISPEP 3 TYR C 144 PRO C 145 0 -6.23 CISPEP 4 TYR D 144 PRO D 145 0 -0.45 CRYST1 45.495 63.190 86.978 84.76 87.70 81.18 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021980 -0.003411 -0.000591 0.00000 SCALE2 0.000000 0.016015 -0.001386 0.00000 SCALE3 0.000000 0.000000 0.011549 0.00000