HEADER HYDROLASE/HYDROLASE INHIBITOR 06-JAN-23 8FQO TITLE ADC-33 IN COMPLEX WITH BORONIC ACID TRANSITION STATE INHIBITOR MB076 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: B, A; COMPND 4 EC: 3.5.2.6; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACINETOBACTER BAUMANNII; SOURCE 3 ORGANISM_TAXID: 470; SOURCE 4 GENE: AMPC, BAA1790NC_1053, EP550_05490, EP560_12590, EQH48_05445; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS BATSI, INHIBITOR, ACINETOBACTER-DERIVED CEPHALOSPORINASE, HYDROLASE, KEYWDS 2 HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.A.POWERS,B.J.WALLAR,C.M.JUNE,E.R.FISH REVDAT 4 25-OCT-23 8FQO 1 REMARK REVDAT 3 26-JUL-23 8FQO 1 JRNL REVDAT 2 12-JUL-23 8FQO 1 JRNL REVDAT 1 05-JUL-23 8FQO 0 JRNL AUTH R.A.POWERS,C.M.JUNE,M.C.FERNANDO,E.R.FISH,O.L.MAURER, JRNL AUTH 2 R.M.BAUMANN,T.J.BEARDSLEY,M.A.TARACILA,S.D.RUDIN,K.M.HUJER, JRNL AUTH 3 A.M.HUJER,N.SANTI,V.VILLAMIL,M.L.INTROVIGNE,F.PRATI, JRNL AUTH 4 E.CASELLI,R.A.BONOMO,B.J.WALLAR JRNL TITL SYNTHESIS OF A NOVEL BORONIC ACID TRANSITION STATE JRNL TITL 2 INHIBITOR, MB076: A HETEROCYCLIC TRIAZOLE EFFECTIVELY JRNL TITL 3 INHIBITS ACINETOBACTER -DERIVED CEPHALOSPORINASE VARIANTS JRNL TITL 4 WITH AN EXPANDED-SUBSTRATE SPECTRUM. JRNL REF J.MED.CHEM. V. 66 8510 2023 JRNL REFN ISSN 0022-2623 JRNL PMID 37358467 JRNL DOI 10.1021/ACS.JMEDCHEM.3C00144 REMARK 2 REMARK 2 RESOLUTION. 1.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX V1.19 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 64.44 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 63.5 REMARK 3 NUMBER OF REFLECTIONS : 41351 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 2083 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 64.4400 - 4.5100 0.99 4410 227 0.1818 0.2143 REMARK 3 2 4.5100 - 3.5800 0.99 4144 248 0.1581 0.2180 REMARK 3 3 3.5800 - 3.1300 1.00 4189 208 0.1861 0.2161 REMARK 3 4 3.1300 - 2.8400 1.00 4114 229 0.2176 0.2595 REMARK 3 5 2.8400 - 2.6400 1.00 4128 227 0.2310 0.2670 REMARK 3 6 2.6400 - 2.4800 1.00 4101 208 0.2311 0.2719 REMARK 3 7 2.4800 - 2.3600 0.97 3999 204 0.2366 0.2846 REMARK 3 8 2.3600 - 2.2600 0.80 3261 172 0.2595 0.3212 REMARK 3 9 2.2600 - 2.1700 0.63 2600 139 0.2551 0.3197 REMARK 3 10 2.1700 - 2.1000 0.44 1802 91 0.2637 0.3335 REMARK 3 11 2.1000 - 2.0300 0.30 1222 65 0.2656 0.2628 REMARK 3 12 2.0300 - 1.9700 0.17 713 30 0.2727 0.3602 REMARK 3 13 1.9700 - 1.9200 0.08 341 18 0.2586 0.2954 REMARK 3 14 1.9200 - 1.8700 0.03 122 5 0.2335 0.2007 REMARK 3 15 1.8700 - 1.8300 0.03 122 12 0.2492 0.3182 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.420 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 5757 REMARK 3 ANGLE : 0.563 7839 REMARK 3 CHIRALITY : 0.044 867 REMARK 3 PLANARITY : 0.004 1019 REMARK 3 DIHEDRAL : 12.161 2085 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 195 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.6699 -11.2996 64.6448 REMARK 3 T TENSOR REMARK 3 T11: 0.1271 T22: 0.1808 REMARK 3 T33: 0.0908 T12: 0.0441 REMARK 3 T13: 0.0094 T23: -0.0431 REMARK 3 L TENSOR REMARK 3 L11: 1.5105 L22: 1.7941 REMARK 3 L33: 1.1358 L12: 0.4787 REMARK 3 L13: -0.0460 L23: 0.3510 REMARK 3 S TENSOR REMARK 3 S11: 0.0240 S12: -0.3678 S13: 0.1839 REMARK 3 S21: 0.2098 S22: 0.0002 S23: 0.0833 REMARK 3 S31: -0.1153 S32: 0.0590 S33: -0.0157 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 196 THROUGH 360 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.4243 -10.7215 55.4051 REMARK 3 T TENSOR REMARK 3 T11: 0.0676 T22: 0.1020 REMARK 3 T33: 0.0609 T12: 0.0034 REMARK 3 T13: -0.0151 T23: -0.0202 REMARK 3 L TENSOR REMARK 3 L11: 1.1576 L22: 2.0097 REMARK 3 L33: 1.0225 L12: 0.1877 REMARK 3 L13: -0.2490 L23: -0.2463 REMARK 3 S TENSOR REMARK 3 S11: -0.0169 S12: -0.1484 S13: 0.1099 REMARK 3 S21: 0.0138 S22: 0.0223 S23: 0.0472 REMARK 3 S31: -0.0183 S32: -0.0086 S33: 0.0079 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 44 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.9113 11.7369 20.6299 REMARK 3 T TENSOR REMARK 3 T11: 0.3251 T22: 0.2556 REMARK 3 T33: 0.3665 T12: -0.0851 REMARK 3 T13: 0.0295 T23: 0.0857 REMARK 3 L TENSOR REMARK 3 L11: 2.1490 L22: 2.6720 REMARK 3 L33: 3.4186 L12: 0.2977 REMARK 3 L13: -0.1641 L23: -0.3636 REMARK 3 S TENSOR REMARK 3 S11: -0.0092 S12: 0.4016 S13: 0.4974 REMARK 3 S21: -0.3697 S22: -0.0293 S23: -0.2203 REMARK 3 S31: -0.7678 S32: 0.5543 S33: -0.0172 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 45 THROUGH 136 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.7147 -17.2701 17.8199 REMARK 3 T TENSOR REMARK 3 T11: 0.1883 T22: 0.1410 REMARK 3 T33: 0.1496 T12: 0.0215 REMARK 3 T13: -0.0013 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 1.9475 L22: 1.1196 REMARK 3 L33: 1.7325 L12: 0.2618 REMARK 3 L13: -0.0226 L23: 0.8438 REMARK 3 S TENSOR REMARK 3 S11: 0.0322 S12: 0.3086 S13: -0.3709 REMARK 3 S21: 0.1439 S22: -0.0501 S23: 0.0604 REMARK 3 S31: 0.3773 S32: -0.0262 S33: 0.0208 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 137 THROUGH 208 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.3682 -14.0859 21.0924 REMARK 3 T TENSOR REMARK 3 T11: 0.1397 T22: 0.1689 REMARK 3 T33: 0.0697 T12: -0.0016 REMARK 3 T13: -0.0403 T23: 0.0212 REMARK 3 L TENSOR REMARK 3 L11: 0.8275 L22: 1.0710 REMARK 3 L33: 1.5211 L12: -0.3174 REMARK 3 L13: -0.4090 L23: 0.6560 REMARK 3 S TENSOR REMARK 3 S11: 0.0575 S12: 0.1112 S13: -0.0978 REMARK 3 S21: 0.1370 S22: 0.0262 S23: -0.0764 REMARK 3 S31: 0.1421 S32: 0.0483 S33: -0.0601 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 209 THROUGH 225 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.1448 -12.3407 27.6563 REMARK 3 T TENSOR REMARK 3 T11: 0.2757 T22: 0.1625 REMARK 3 T33: 0.1709 T12: -0.0609 REMARK 3 T13: 0.0208 T23: -0.0420 REMARK 3 L TENSOR REMARK 3 L11: 1.3449 L22: 1.1326 REMARK 3 L33: 2.1955 L12: -0.4862 REMARK 3 L13: 0.6765 L23: 1.0929 REMARK 3 S TENSOR REMARK 3 S11: 0.2002 S12: 0.2588 S13: -0.3272 REMARK 3 S21: 0.5422 S22: -0.1188 S23: 0.2713 REMARK 3 S31: 0.9358 S32: -0.2241 S33: 0.0128 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 226 THROUGH 257 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.4123 -6.7367 10.0455 REMARK 3 T TENSOR REMARK 3 T11: 0.1451 T22: 0.3951 REMARK 3 T33: 0.1277 T12: -0.0290 REMARK 3 T13: 0.0124 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 1.3095 L22: 1.8651 REMARK 3 L33: 3.0939 L12: -0.5210 REMARK 3 L13: 0.0789 L23: 0.8572 REMARK 3 S TENSOR REMARK 3 S11: 0.1845 S12: 0.5122 S13: 0.0202 REMARK 3 S21: -0.3424 S22: 0.0339 S23: -0.2309 REMARK 3 S31: 0.0521 S32: 0.3671 S33: -0.2371 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 258 THROUGH 308 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.1366 -2.6639 4.9191 REMARK 3 T TENSOR REMARK 3 T11: 0.2522 T22: 0.5485 REMARK 3 T33: 0.2039 T12: 0.0231 REMARK 3 T13: -0.0220 T23: 0.1697 REMARK 3 L TENSOR REMARK 3 L11: 0.3978 L22: 1.2506 REMARK 3 L33: 0.6972 L12: 0.4368 REMARK 3 L13: -0.4677 L23: -0.1722 REMARK 3 S TENSOR REMARK 3 S11: -0.0088 S12: 0.8005 S13: 0.4517 REMARK 3 S21: -0.3801 S22: -0.0312 S23: 0.2385 REMARK 3 S31: -0.1712 S32: -0.2454 S33: -0.1285 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 309 THROUGH 359 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.5695 4.5404 15.2746 REMARK 3 T TENSOR REMARK 3 T11: 0.2405 T22: 0.2209 REMARK 3 T33: 0.2637 T12: -0.0226 REMARK 3 T13: 0.0347 T23: 0.2729 REMARK 3 L TENSOR REMARK 3 L11: 1.0552 L22: 1.1721 REMARK 3 L33: 2.6043 L12: 0.3814 REMARK 3 L13: -0.5630 L23: 0.1081 REMARK 3 S TENSOR REMARK 3 S11: 0.1004 S12: 0.3399 S13: 0.7412 REMARK 3 S21: -0.2783 S22: -0.0593 S23: -0.0960 REMARK 3 S31: -0.6229 S32: 0.1442 S33: -0.1681 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8FQO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JAN-23. REMARK 100 THE DEPOSITION ID IS D_1000270449. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUL-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC V1.0.5 REMARK 200 DATA SCALING SOFTWARE : AIMLESS V2.2.1 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41365 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.810 REMARK 200 RESOLUTION RANGE LOW (A) : 100.475 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.4 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 53.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.16300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4U0X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: ADC-33 (3.5 MG/ML) IN 25% W/V REMARK 280 POLYETHYLENE GLYCOL (PEG) 1500, 0.1 M SUCCINATE/ PHOSPHATE/ REMARK 280 GLYCINE, PH 5.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.42850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 100.47450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.99700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 100.47450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.42850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.99700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B -1 REMARK 465 GLY B 0 REMARK 465 MET A -1 REMARK 465 GLY A 0 REMARK 465 ASN A 1 REMARK 465 THR A 2 REMARK 465 LYS A 360 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN B 1 CG OD1 ND2 REMARK 470 LYS B 10 CG CD CE NZ REMARK 470 GLU B 21 CG CD OE1 OE2 REMARK 470 LYS B 97 CG CD CE NZ REMARK 470 GLU B 124 CG CD OE1 OE2 REMARK 470 LYS B 126 CG CD CE NZ REMARK 470 ASP B 128 CG OD1 OD2 REMARK 470 GLN B 129 CG CD OE1 NE2 REMARK 470 LYS B 139 CG CD CE NZ REMARK 470 SER B 143 OG REMARK 470 GLU B 146 CG CD OE1 OE2 REMARK 470 LYS B 193 CG CD CE NZ REMARK 470 ARG B 214 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 217 CG CD1 CD2 REMARK 470 GLU B 290 CG CD OE1 OE2 REMARK 470 LYS B 329 CG CD CE NZ REMARK 470 GLU B 345 CG CD OE1 OE2 REMARK 470 LYS B 360 CG CD CE NZ REMARK 470 PRO A 3 CG CD REMARK 470 LYS A 4 CG CD CE NZ REMARK 470 ASP A 5 CG OD1 OD2 REMARK 470 GLN A 6 CG CD OE1 NE2 REMARK 470 LYS A 10 CG CD CE NZ REMARK 470 GLU A 21 CG CD OE1 OE2 REMARK 470 LYS A 37 CG CD CE NZ REMARK 470 SER A 57 OG REMARK 470 LYS A 94 CG CD CE NZ REMARK 470 GLU A 95 CG CD OE1 OE2 REMARK 470 LYS A 97 CG CD CE NZ REMARK 470 ASP A 123 CG OD1 OD2 REMARK 470 GLU A 124 CG CD OE1 OE2 REMARK 470 LYS A 126 CG CD CE NZ REMARK 470 SER A 143 OG REMARK 470 LYS A 185 CG CD CE NZ REMARK 470 LYS A 193 CG CD CE NZ REMARK 470 ARG A 214 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 244 CG CD CE NZ REMARK 470 LYS A 298 CG CD CE NZ REMARK 470 SER A 303 OG REMARK 470 LYS A 304 CG CD CE NZ REMARK 470 SER A 307 OG REMARK 470 LYS A 329 CG CD CE NZ REMARK 470 GLU A 345 CG CD OE1 OE2 REMARK 470 LYS A 359 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 64 O5 YDB A 401 2.13 REMARK 500 O6 YDB B 401 O HOH B 501 2.17 REMARK 500 OG SER B 64 O6 YDB B 401 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 116 57.89 -161.30 REMARK 500 LYS B 126 -42.78 -142.12 REMARK 500 LYS B 141 -68.12 -121.05 REMARK 500 ARG B 214 96.78 -68.17 REMARK 500 TYR B 223 27.67 -162.09 REMARK 500 LYS B 244 1.31 -68.05 REMARK 500 ASN B 264 -124.54 61.35 REMARK 500 SER B 303 -63.62 -96.72 REMARK 500 ASN B 339 33.06 -93.93 REMARK 500 ASN A 116 50.23 -164.55 REMARK 500 LYS A 126 -48.98 -131.77 REMARK 500 LYS A 141 -77.78 -117.21 REMARK 500 HIS A 186 42.56 -142.43 REMARK 500 ARG A 214 95.41 -69.47 REMARK 500 PRO A 216 -179.16 -63.03 REMARK 500 TYR A 223 22.73 -161.18 REMARK 500 ASN A 264 -125.37 63.12 REMARK 500 ASN A 339 31.89 -89.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 757 DISTANCE = 6.60 ANGSTROMS REMARK 525 HOH B 758 DISTANCE = 6.68 ANGSTROMS REMARK 525 HOH A 686 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH A 687 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH A 688 DISTANCE = 6.37 ANGSTROMS REMARK 525 HOH A 689 DISTANCE = 7.58 ANGSTROMS REMARK 525 HOH A 690 DISTANCE = 7.69 ANGSTROMS DBREF 8FQO B 0 360 UNP A7Y407 A7Y407_ACIBA 24 384 DBREF 8FQO A 0 360 UNP A7Y407 A7Y407_ACIBA 24 384 SEQADV 8FQO MET B -1 UNP A7Y407 INITIATING METHIONINE SEQADV 8FQO MET A -1 UNP A7Y407 INITIATING METHIONINE SEQRES 1 B 362 MET GLY ASN THR PRO LYS ASP GLN GLU ILE LYS LYS LEU SEQRES 2 B 362 VAL ASP GLN ASN PHE LYS PRO LEU LEU GLU LYS TYR ASP SEQRES 3 B 362 VAL PRO GLY MET ALA VAL GLY VAL ILE GLN ASN ASN LYS SEQRES 4 B 362 LYS TYR GLU MET TYR TYR GLY LEU GLN SER VAL GLN ASP SEQRES 5 B 362 LYS LYS ALA VAL ASN SER SER THR ILE PHE GLU LEU GLY SEQRES 6 B 362 SER VAL SER LYS LEU PHE THR ALA THR ALA GLY GLY TYR SEQRES 7 B 362 ALA LYS ASN LYS GLY LYS ILE SER PHE ASP ASP THR PRO SEQRES 8 B 362 GLY LYS TYR TRP LYS GLU LEU LYS ASN THR PRO ILE ASP SEQRES 9 B 362 GLN VAL ASN LEU LEU GLN LEU ALA THR TYR THR SER GLY SEQRES 10 B 362 ASN LEU ALA LEU GLN PHE PRO ASP GLU VAL LYS THR ASP SEQRES 11 B 362 GLN GLN VAL LEU THR PHE PHE LYS ASP TRP LYS PRO LYS SEQRES 12 B 362 ASN SER ILE GLY GLU TYR ARG GLN TYR SER ASN PRO SER SEQRES 13 B 362 ILE GLY LEU PHE GLY LYS VAL VAL ALA LEU SER MET ASN SEQRES 14 B 362 LYS PRO PHE ASP GLN VAL LEU GLU LYS THR ILE PHE PRO SEQRES 15 B 362 ALA LEU GLY LEU LYS HIS SER TYR VAL ASN VAL PRO LYS SEQRES 16 B 362 THR GLN MET GLN ASN TYR ALA PHE GLY TYR ASN GLN GLU SEQRES 17 B 362 ASN GLN PRO ILE ARG VAL ASN ARG GLY PRO LEU ASP ALA SEQRES 18 B 362 ALA PRO ALA TYR GLY VAL LYS SER THR LEU PRO ASP MET SEQRES 19 B 362 LEU SER PHE ILE HIS ALA ASN LEU ASN PRO GLN LYS TYR SEQRES 20 B 362 PRO ALA ASP ILE GLN ARG ALA ILE ASN GLU THR HIS GLN SEQRES 21 B 362 GLY ARG TYR GLN VAL ASN THR MET TYR GLN ALA LEU GLY SEQRES 22 B 362 TRP GLU GLU PHE SER TYR PRO ALA THR LEU GLN THR LEU SEQRES 23 B 362 LEU ASP SER ASN SER GLU GLN ILE VAL MET LYS PRO ASN SEQRES 24 B 362 LYS VAL THR ALA ILE SER LYS GLU PRO SER VAL LYS MET SEQRES 25 B 362 TYR HIS LYS THR GLY SER THR ASN GLY PHE GLY THR TYR SEQRES 26 B 362 VAL VAL PHE ILE PRO LYS GLU ASN ILE GLY LEU VAL MET SEQRES 27 B 362 LEU THR ASN LYS ARG ILE PRO ASN GLU GLU ARG ILE LYS SEQRES 28 B 362 ALA ALA TYR ALA VAL LEU ASN ALA ILE LYS LYS SEQRES 1 A 362 MET GLY ASN THR PRO LYS ASP GLN GLU ILE LYS LYS LEU SEQRES 2 A 362 VAL ASP GLN ASN PHE LYS PRO LEU LEU GLU LYS TYR ASP SEQRES 3 A 362 VAL PRO GLY MET ALA VAL GLY VAL ILE GLN ASN ASN LYS SEQRES 4 A 362 LYS TYR GLU MET TYR TYR GLY LEU GLN SER VAL GLN ASP SEQRES 5 A 362 LYS LYS ALA VAL ASN SER SER THR ILE PHE GLU LEU GLY SEQRES 6 A 362 SER VAL SER LYS LEU PHE THR ALA THR ALA GLY GLY TYR SEQRES 7 A 362 ALA LYS ASN LYS GLY LYS ILE SER PHE ASP ASP THR PRO SEQRES 8 A 362 GLY LYS TYR TRP LYS GLU LEU LYS ASN THR PRO ILE ASP SEQRES 9 A 362 GLN VAL ASN LEU LEU GLN LEU ALA THR TYR THR SER GLY SEQRES 10 A 362 ASN LEU ALA LEU GLN PHE PRO ASP GLU VAL LYS THR ASP SEQRES 11 A 362 GLN GLN VAL LEU THR PHE PHE LYS ASP TRP LYS PRO LYS SEQRES 12 A 362 ASN SER ILE GLY GLU TYR ARG GLN TYR SER ASN PRO SER SEQRES 13 A 362 ILE GLY LEU PHE GLY LYS VAL VAL ALA LEU SER MET ASN SEQRES 14 A 362 LYS PRO PHE ASP GLN VAL LEU GLU LYS THR ILE PHE PRO SEQRES 15 A 362 ALA LEU GLY LEU LYS HIS SER TYR VAL ASN VAL PRO LYS SEQRES 16 A 362 THR GLN MET GLN ASN TYR ALA PHE GLY TYR ASN GLN GLU SEQRES 17 A 362 ASN GLN PRO ILE ARG VAL ASN ARG GLY PRO LEU ASP ALA SEQRES 18 A 362 ALA PRO ALA TYR GLY VAL LYS SER THR LEU PRO ASP MET SEQRES 19 A 362 LEU SER PHE ILE HIS ALA ASN LEU ASN PRO GLN LYS TYR SEQRES 20 A 362 PRO ALA ASP ILE GLN ARG ALA ILE ASN GLU THR HIS GLN SEQRES 21 A 362 GLY ARG TYR GLN VAL ASN THR MET TYR GLN ALA LEU GLY SEQRES 22 A 362 TRP GLU GLU PHE SER TYR PRO ALA THR LEU GLN THR LEU SEQRES 23 A 362 LEU ASP SER ASN SER GLU GLN ILE VAL MET LYS PRO ASN SEQRES 24 A 362 LYS VAL THR ALA ILE SER LYS GLU PRO SER VAL LYS MET SEQRES 25 A 362 TYR HIS LYS THR GLY SER THR ASN GLY PHE GLY THR TYR SEQRES 26 A 362 VAL VAL PHE ILE PRO LYS GLU ASN ILE GLY LEU VAL MET SEQRES 27 A 362 LEU THR ASN LYS ARG ILE PRO ASN GLU GLU ARG ILE LYS SEQRES 28 A 362 ALA ALA TYR ALA VAL LEU ASN ALA ILE LYS LYS HET YDB B 401 24 HET PO4 B 402 5 HET YDB A 401 24 HETNAM YDB 1-[(2R)-2-{2-[(5-AMINO-1,3,4-THIADIAZOL-2-YL) HETNAM 2 YDB SULFANYL]ACETAMIDO}-2-BORONOETHYL]-1H-1,2,3-TRIAZOLE- HETNAM 3 YDB 4-CARBOXYLIC ACID HETNAM PO4 PHOSPHATE ION FORMUL 3 YDB 2(C9 H12 B N7 O5 S2) FORMUL 4 PO4 O4 P 3- FORMUL 6 HOH *448(H2 O) HELIX 1 AA1 PRO B 3 PHE B 16 1 14 HELIX 2 AA2 LYS B 17 ASP B 24 1 8 HELIX 3 AA3 VAL B 65 LYS B 80 1 16 HELIX 4 AA4 THR B 88 TRP B 93 1 6 HELIX 5 AA5 LYS B 94 LYS B 97 5 4 HELIX 6 AA6 THR B 99 VAL B 104 5 6 HELIX 7 AA7 ASN B 105 THR B 111 1 7 HELIX 8 AA8 THR B 127 ASP B 137 1 11 HELIX 9 AA9 SER B 151 MET B 166 1 16 HELIX 10 AB1 PRO B 169 THR B 177 1 9 HELIX 11 AB2 THR B 177 LEU B 182 1 6 HELIX 12 AB3 PRO B 192 TYR B 199 5 8 HELIX 13 AB4 PRO B 216 ASP B 218 5 3 HELIX 14 AB5 ALA B 219 GLY B 224 1 6 HELIX 15 AB6 THR B 228 ASN B 241 1 14 HELIX 16 AB7 PRO B 242 TYR B 245 5 4 HELIX 17 AB8 PRO B 246 THR B 256 1 11 HELIX 18 AB9 THR B 280 SER B 287 1 8 HELIX 19 AC1 SER B 289 LYS B 295 1 7 HELIX 20 AC2 PRO B 328 GLU B 330 5 3 HELIX 21 AC3 PRO B 343 ILE B 358 1 16 HELIX 22 AC4 LYS A 4 ASP A 24 1 21 HELIX 23 AC5 VAL A 65 LYS A 80 1 16 HELIX 24 AC6 THR A 88 TYR A 92 5 5 HELIX 25 AC7 TRP A 93 LYS A 97 5 5 HELIX 26 AC8 THR A 99 VAL A 104 5 6 HELIX 27 AC9 ASN A 105 THR A 111 1 7 HELIX 28 AD1 THR A 127 ASP A 137 1 11 HELIX 29 AD2 SER A 151 MET A 166 1 16 HELIX 30 AD3 PRO A 169 THR A 177 1 9 HELIX 31 AD4 THR A 177 LEU A 182 1 6 HELIX 32 AD5 PRO A 192 TYR A 199 5 8 HELIX 33 AD6 ASP A 218 GLY A 224 1 7 HELIX 34 AD7 THR A 228 ASN A 241 1 14 HELIX 35 AD8 PRO A 242 TYR A 245 5 4 HELIX 36 AD9 PRO A 246 THR A 256 1 11 HELIX 37 AE1 THR A 280 SER A 287 1 8 HELIX 38 AE2 SER A 289 LYS A 295 1 7 HELIX 39 AE3 PRO A 343 ILE A 358 1 16 SHEET 1 AA1 9 LYS B 52 ALA B 53 0 SHEET 2 AA1 9 LYS B 37 SER B 47 -1 N GLN B 46 O LYS B 52 SHEET 3 AA1 9 GLY B 27 GLN B 34 -1 N VAL B 30 O MET B 41 SHEET 4 AA1 9 ILE B 332 THR B 338 -1 O LEU B 337 N ALA B 29 SHEET 5 AA1 9 GLY B 321 ILE B 327 -1 N ILE B 327 O ILE B 332 SHEET 6 AA1 9 LYS B 309 SER B 316 -1 N GLY B 315 O THR B 322 SHEET 7 AA1 9 GLU B 273 SER B 276 -1 N PHE B 275 O MET B 310 SHEET 8 AA1 9 MET B 266 GLN B 268 -1 N TYR B 267 O GLU B 274 SHEET 9 AA1 9 TYR B 261 VAL B 263 -1 N TYR B 261 O GLN B 268 SHEET 1 AA2 2 PHE B 60 GLU B 61 0 SHEET 2 AA2 2 LYS B 226 SER B 227 -1 O SER B 227 N PHE B 60 SHEET 1 AA3 2 TYR B 147 ARG B 148 0 SHEET 2 AA3 2 ASN B 297 LYS B 298 -1 O ASN B 297 N ARG B 148 SHEET 1 AA4 2 GLY B 202 TYR B 203 0 SHEET 2 AA4 2 PRO B 209 ILE B 210 -1 O ILE B 210 N GLY B 202 SHEET 1 AA5 9 LYS A 52 ALA A 53 0 SHEET 2 AA5 9 LYS A 37 SER A 47 -1 N GLN A 46 O LYS A 52 SHEET 3 AA5 9 GLY A 27 GLN A 34 -1 N VAL A 30 O MET A 41 SHEET 4 AA5 9 ILE A 332 THR A 338 -1 O LEU A 337 N ALA A 29 SHEET 5 AA5 9 PHE A 320 ILE A 327 -1 N ILE A 327 O ILE A 332 SHEET 6 AA5 9 LYS A 309 THR A 317 -1 N GLY A 315 O THR A 322 SHEET 7 AA5 9 GLU A 273 SER A 276 -1 N PHE A 275 O MET A 310 SHEET 8 AA5 9 MET A 266 GLN A 268 -1 N TYR A 267 O GLU A 274 SHEET 9 AA5 9 TYR A 261 VAL A 263 -1 N VAL A 263 O MET A 266 SHEET 1 AA6 2 PHE A 60 GLU A 61 0 SHEET 2 AA6 2 LYS A 226 SER A 227 -1 O SER A 227 N PHE A 60 SHEET 1 AA7 2 TYR A 147 ARG A 148 0 SHEET 2 AA7 2 ASN A 297 LYS A 298 -1 O ASN A 297 N ARG A 148 SHEET 1 AA8 2 GLY A 202 TYR A 203 0 SHEET 2 AA8 2 PRO A 209 ILE A 210 -1 O ILE A 210 N GLY A 202 LINK OG SER B 64 B1 YDB B 401 1555 1555 1.40 LINK OG SER A 64 B1 YDB A 401 1555 1555 1.40 CISPEP 1 TYR B 277 PRO B 278 0 0.80 CISPEP 2 TYR A 277 PRO A 278 0 -0.03 CRYST1 42.857 83.994 200.949 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023333 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011906 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004976 0.00000