HEADER VIRAL PROTEIN 07-JAN-23 8FRJ TITLE STRUCTURE OF NSP14 N7-METHYLTRANSFERASE DOMAIN FUSED WITH TELSAM BOUND TITLE 2 TO SGC0946 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION FACTOR ETV6,GUANINE-N7 METHYLTRANSFERASE COMPND 3 NSP14 CHIMERA; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: ETS TRANSLOCATION VARIANT 6,ETS-RELATED PROTEIN TEL1,TEL, COMPND 6 NON-STRUCTURAL PROTEIN 14,NSP14,PROOFREADING EXORIBONUCLEASE NSP14, COMPND 7 EXON; COMPND 8 EC: 2.1.1.56,3.1.13.-; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES; COMPND 11 OTHER_DETAILS: FUSION PROTEIN CONTAINING TELSAM (UNIPROT P41212) AND COMPND 12 SARS-COV-2 NSP14 N7-METHYL TRANSFERASE DOMAIN (P0DTD1) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_TAXID: 2697049; SOURCE 5 GENE: ETV6, TEL, TEL1, REP, 1A-1B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS N7-GUANINE METHYL TRANSFERASE, SARS-COV-2, NSP14, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.KOTTUR,A.K.AGGARWAL REVDAT 2 27-SEP-23 8FRJ 1 JRNL REVDAT 1 26-JUL-23 8FRJ 0 JRNL AUTH J.KOTTUR,K.M.WHITE,M.L.RODRIGUEZ,O.RECHKOBLIT, JRNL AUTH 2 R.QUINTANA-FELICIANO,A.NAYAR,A.GARCIA-SASTRE,A.K.AGGARWAL JRNL TITL STRUCTURES OF SARS-COV-2 N7-METHYLTRANSFERASE WITH DOT1L AND JRNL TITL 2 PRMT7 INHIBITORS PROVIDE A PLATFORM FOR NEW ANTIVIRALS. JRNL REF PLOS PATHOG. V. 19 11546 2023 JRNL REFN ESSN 1553-7374 JRNL PMID 37523415 JRNL DOI 10.1371/JOURNAL.PPAT.1011546 REMARK 2 REMARK 2 RESOLUTION. 1.57 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20RC3_4406 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.57 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.31 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 67.8 REMARK 3 NUMBER OF REFLECTIONS : 31716 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 1575 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.3100 - 3.4800 1.00 4123 244 0.1528 0.1880 REMARK 3 2 3.4800 - 2.7600 1.00 4094 196 0.1633 0.2162 REMARK 3 3 2.7600 - 2.4100 1.00 4027 228 0.1707 0.1852 REMARK 3 4 2.4100 - 2.1900 1.00 4016 203 0.1677 0.2080 REMARK 3 5 2.1900 - 2.0400 1.00 4036 203 0.1772 0.2119 REMARK 3 6 2.0400 - 1.9200 0.96 3851 196 0.2056 0.2313 REMARK 3 7 1.9200 - 1.8200 0.60 2388 142 0.2016 0.2362 REMARK 3 8 1.8200 - 1.7400 0.39 1589 61 0.2286 0.2362 REMARK 3 9 1.7400 - 1.6700 0.27 1087 63 0.2528 0.2871 REMARK 3 10 1.6700 - 1.6200 0.17 698 30 0.3126 0.4017 REMARK 3 11 1.6200 - 1.5700 0.06 232 9 0.3718 0.5126 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.148 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.91 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2277 REMARK 3 ANGLE : 0.934 3118 REMARK 3 CHIRALITY : 0.059 333 REMARK 3 PLANARITY : 0.008 395 REMARK 3 DIHEDRAL : 7.123 338 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 5 THROUGH 81 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.6206 -6.6884 -3.0345 REMARK 3 T TENSOR REMARK 3 T11: 0.1258 T22: 0.1951 REMARK 3 T33: 0.2963 T12: -0.0114 REMARK 3 T13: -0.0117 T23: -0.0734 REMARK 3 L TENSOR REMARK 3 L11: 1.4912 L22: 2.2757 REMARK 3 L33: 0.6753 L12: 0.0114 REMARK 3 L13: 0.0140 L23: 0.3787 REMARK 3 S TENSOR REMARK 3 S11: -0.0646 S12: -0.0287 S13: 0.0781 REMARK 3 S21: -0.0537 S22: -0.0685 S23: 0.1546 REMARK 3 S31: -0.0094 S32: -0.2655 S33: 0.0648 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 300 THROUGH 526 ) REMARK 3 ORIGIN FOR THE GROUP (A): -37.4417 -35.9026 4.4471 REMARK 3 T TENSOR REMARK 3 T11: 0.0568 T22: 0.1027 REMARK 3 T33: 0.0876 T12: 0.0544 REMARK 3 T13: -0.0043 T23: -0.0128 REMARK 3 L TENSOR REMARK 3 L11: 1.0493 L22: 0.7127 REMARK 3 L33: 1.7150 L12: 0.0176 REMARK 3 L13: -0.3385 L23: 0.0051 REMARK 3 S TENSOR REMARK 3 S11: 0.0111 S12: 0.0556 S13: 0.0063 REMARK 3 S21: -0.0168 S22: 0.0319 S23: 0.0080 REMARK 3 S31: 0.0928 S32: 0.1279 S33: -0.0025 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8FRJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JAN-23. REMARK 100 THE DEPOSITION ID IS D_1000271246. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.1-6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979338 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS FEB 5, 2021 (BUILT 20210323) REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4, STARANISO 2.3.13 REMARK 200 (20190907) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31718 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.570 REMARK 200 RESOLUTION RANGE LOW (A) : 54.595 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 200 DATA REDUNDANCY : 10.20 REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.57 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.11600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 11-17% REAGENT ALCOHOL, 0.1-0.3M REMARK 280 LITHIUM SULFATE AND 0.1M SODIUM CITRATE PH 5.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 32.42667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 16.21333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 24.32000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 8.10667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 40.53333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 ILE A 3 REMARK 465 ALA A 4 REMARK 465 THR A 403 REMARK 465 ARG A 404 REMARK 465 VAL A 405 REMARK 465 LEU A 406 REMARK 465 SER A 407 REMARK 465 ASN A 408 REMARK 465 LEU A 409 REMARK 465 ASN A 410 REMARK 465 LEU A 411 REMARK 465 PRO A 412 REMARK 465 GLY A 413 REMARK 465 CYS A 414 REMARK 465 ASP A 415 REMARK 465 GLY A 416 REMARK 465 GLY A 417 REMARK 465 SER A 418 REMARK 465 LEU A 419 REMARK 465 TYR A 420 REMARK 465 VAL A 421 REMARK 465 ASN A 422 REMARK 465 LYS A 423 REMARK 465 HIS A 424 REMARK 465 ALA A 425 REMARK 465 PHE A 426 REMARK 465 HIS A 427 REMARK 465 THR A 428 REMARK 465 PRO A 429 REMARK 465 ALA A 430 REMARK 465 PHE A 431 REMARK 465 ASP A 432 REMARK 465 GLY A 456 REMARK 465 LYS A 457 REMARK 465 GLN A 458 REMARK 465 VAL A 459 REMARK 465 VAL A 460 REMARK 465 SER A 461 REMARK 465 ASP A 462 REMARK 465 ILE A 463 REMARK 465 ASP A 464 REMARK 465 TYR A 465 REMARK 465 GLN A 527 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 10 CD NE CZ NH1 NH2 REMARK 470 ARG A 18 NE CZ NH1 NH2 REMARK 470 ASP A 19 OD1 OD2 REMARK 470 ARG A 35 NE CZ NH1 NH2 REMARK 470 ILE A 37 CG1 CG2 CD1 REMARK 470 SER A 39 OG REMARK 470 ASN A 40 CG OD1 ND2 REMARK 470 GLU A 43 CG CD OE1 OE2 REMARK 470 GLN A 78 CG CD OE1 NE2 REMARK 470 GLU A 302 CG CD OE1 OE2 REMARK 470 LYS A 376 NZ REMARK 470 ASP A 402 CG OD1 OD2 REMARK 470 LYS A 433 CD CE NZ REMARK 470 VAL A 466 CG1 CG2 REMARK 470 LYS A 469 CG CD CE NZ REMARK 470 ARG A 525 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 526 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH22 ARG A 476 O THR A 524 1.49 REMARK 500 O HOH A 714 O HOH A 954 1.94 REMARK 500 O HOH A 772 O HOH A 1053 1.97 REMARK 500 O HOH A 918 O HOH A 1026 1.98 REMARK 500 O HOH A 1004 O HOH A 1069 1.99 REMARK 500 O HOH A 830 O HOH A 935 2.02 REMARK 500 O HOH A 1085 O HOH A 1086 2.04 REMARK 500 O HOH A 839 O HOH A 967 2.04 REMARK 500 N LEU A 5 O HOH A 701 2.06 REMARK 500 O HOH A 849 O HOH A 975 2.07 REMARK 500 O HOH A 864 O HOH A 1001 2.07 REMARK 500 O HOH A 798 O HOH A 977 2.09 REMARK 500 O HOH A 977 O HOH A 1044 2.09 REMARK 500 O HOH A 795 O HOH A 950 2.09 REMARK 500 O HOH A 736 O HOH A 959 2.10 REMARK 500 OD2 ASP A 375 O HOH A 702 2.12 REMARK 500 O HOH A 903 O HOH A 965 2.12 REMARK 500 O HOH A 705 O HOH A 981 2.12 REMARK 500 O HOH A 711 O HOH A 788 2.13 REMARK 500 O HOH A 926 O HOH A 929 2.16 REMARK 500 O HOH A 929 O HOH A 941 2.16 REMARK 500 O HOH A 866 O HOH A 938 2.17 REMARK 500 O HOH A 797 O HOH A 932 2.19 REMARK 500 O ASN A 30 O HOH A 703 2.19 REMARK 500 O HOH A 1001 O HOH A 1016 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 997 O HOH A 1022 5555 2.13 REMARK 500 O HOH A 956 O HOH A 1063 4444 2.15 REMARK 500 O HOH A 798 O HOH A 935 2454 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 470 127.91 -170.42 REMARK 500 ARG A 525 45.13 -99.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1082 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A1083 DISTANCE = 7.53 ANGSTROMS REMARK 525 HOH A1084 DISTANCE = 8.57 ANGSTROMS REMARK 525 HOH A1085 DISTANCE = 9.29 ANGSTROMS REMARK 525 HOH A1086 DISTANCE = 11.06 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 452 SG REMARK 620 2 CYS A 477 SG 110.2 REMARK 620 3 CYS A 484 SG 113.5 116.6 REMARK 620 4 HIS A 487 ND1 108.0 112.2 95.3 REMARK 620 N 1 2 3 DBREF 8FRJ A 2 78 UNP P41212 ETV6_HUMAN 47 123 DBREF 8FRJ A 300 508 UNP P0DTD1 R1AB_SARS2 6225 6433 SEQADV 8FRJ GLY A 1 UNP P41212 EXPRESSION TAG SEQADV 8FRJ ALA A 4 UNP P41212 ARG 49 ENGINEERED MUTATION SEQADV 8FRJ GLU A 67 UNP P41212 VAL 112 ENGINEERED MUTATION SEQADV 8FRJ ALA A 77 UNP P41212 LYS 122 ENGINEERED MUTATION SEQADV 8FRJ PRO A 79 UNP P41212 LINKER SEQADV 8FRJ ALA A 80 UNP P41212 LINKER SEQADV 8FRJ ALA A 81 UNP P41212 LINKER SEQADV 8FRJ TRP A 509 UNP P0DTD1 EXPRESSION TAG SEQADV 8FRJ VAL A 510 UNP P0DTD1 EXPRESSION TAG SEQADV 8FRJ TYR A 511 UNP P0DTD1 EXPRESSION TAG SEQADV 8FRJ LYS A 512 UNP P0DTD1 EXPRESSION TAG SEQADV 8FRJ GLN A 513 UNP P0DTD1 EXPRESSION TAG SEQADV 8FRJ PHE A 514 UNP P0DTD1 EXPRESSION TAG SEQADV 8FRJ ASP A 515 UNP P0DTD1 EXPRESSION TAG SEQADV 8FRJ THR A 516 UNP P0DTD1 EXPRESSION TAG SEQADV 8FRJ TYR A 517 UNP P0DTD1 EXPRESSION TAG SEQADV 8FRJ ASN A 518 UNP P0DTD1 EXPRESSION TAG SEQADV 8FRJ LEU A 519 UNP P0DTD1 EXPRESSION TAG SEQADV 8FRJ TRP A 520 UNP P0DTD1 EXPRESSION TAG SEQADV 8FRJ ASN A 521 UNP P0DTD1 EXPRESSION TAG SEQADV 8FRJ THR A 522 UNP P0DTD1 EXPRESSION TAG SEQADV 8FRJ PHE A 523 UNP P0DTD1 EXPRESSION TAG SEQADV 8FRJ THR A 524 UNP P0DTD1 EXPRESSION TAG SEQADV 8FRJ ARG A 525 UNP P0DTD1 EXPRESSION TAG SEQADV 8FRJ LEU A 526 UNP P0DTD1 EXPRESSION TAG SEQADV 8FRJ GLN A 527 UNP P0DTD1 EXPRESSION TAG SEQRES 1 A 309 GLY SER ILE ALA LEU PRO ALA HIS LEU ARG LEU GLN PRO SEQRES 2 A 309 ILE TYR TRP SER ARG ASP ASP VAL ALA GLN TRP LEU LYS SEQRES 3 A 309 TRP ALA GLU ASN GLU PHE SER LEU ARG PRO ILE ASP SER SEQRES 4 A 309 ASN THR PHE GLU MET ASN GLY LYS ALA LEU LEU LEU LEU SEQRES 5 A 309 THR LYS GLU ASP PHE ARG TYR ARG SER PRO HIS SER GLY SEQRES 6 A 309 ASP GLU LEU TYR GLU LEU LEU GLN HIS ILE LEU ALA GLN SEQRES 7 A 309 PRO ALA ALA GLY ASP GLU LEU LYS ILE ASN ALA ALA CYS SEQRES 8 A 309 ARG LYS VAL GLN HIS MET VAL VAL LYS ALA ALA LEU LEU SEQRES 9 A 309 ALA ASP LYS PHE PRO VAL LEU HIS ASP ILE GLY ASN PRO SEQRES 10 A 309 LYS ALA ILE LYS CYS VAL PRO GLN ALA ASP VAL GLU TRP SEQRES 11 A 309 LYS PHE TYR ASP ALA GLN PRO CYS SER ASP LYS ALA TYR SEQRES 12 A 309 LYS ILE GLU GLU LEU PHE TYR SER TYR ALA THR HIS SER SEQRES 13 A 309 ASP LYS PHE THR ASP GLY VAL CYS LEU PHE TRP ASN CYS SEQRES 14 A 309 ASN VAL ASP ARG TYR PRO ALA ASN SER ILE VAL CYS ARG SEQRES 15 A 309 PHE ASP THR ARG VAL LEU SER ASN LEU ASN LEU PRO GLY SEQRES 16 A 309 CYS ASP GLY GLY SER LEU TYR VAL ASN LYS HIS ALA PHE SEQRES 17 A 309 HIS THR PRO ALA PHE ASP LYS SER ALA PHE VAL ASN LEU SEQRES 18 A 309 LYS GLN LEU PRO PHE PHE TYR TYR SER ASP SER PRO CYS SEQRES 19 A 309 GLU SER HIS GLY LYS GLN VAL VAL SER ASP ILE ASP TYR SEQRES 20 A 309 VAL PRO LEU LYS SER ALA THR CYS ILE THR ARG CYS ASN SEQRES 21 A 309 LEU GLY GLY ALA VAL CYS ARG HIS HIS ALA ASN GLU TYR SEQRES 22 A 309 ARG LEU TYR LEU ASP ALA TYR ASN MET MET ILE SER ALA SEQRES 23 A 309 GLY PHE SER LEU TRP VAL TYR LYS GLN PHE ASP THR TYR SEQRES 24 A 309 ASN LEU TRP ASN THR PHE THR ARG LEU GLN HET ZN A 601 1 HET AW2 A 602 80 HETNAM ZN ZINC ION HETNAM AW2 5-BROMO-7-{5-[(3-{[(4-TERT-BUTYLPHENYL) HETNAM 2 AW2 CARBAMOYL]AMINO}PROPYL)(PROPAN-2-YL)AMINO]-5-DEOXY- HETNAM 3 AW2 BETA-D-RIBOFURANOSYL}-7H-PYRROLO[2,3-D]PYRIMIDIN-4- HETNAM 4 AW2 AMINE FORMUL 2 ZN ZN 2+ FORMUL 3 AW2 C28 H40 BR N7 O4 FORMUL 4 HOH *386(H2 O) HELIX 1 AA1 PRO A 6 LEU A 11 5 6 HELIX 2 AA2 GLN A 12 TRP A 16 5 5 HELIX 3 AA3 SER A 17 SER A 33 1 17 HELIX 4 AA4 ASN A 45 LEU A 50 1 6 HELIX 5 AA5 THR A 53 SER A 61 1 9 HELIX 6 AA6 SER A 64 GLN A 78 1 15 HELIX 7 AA7 ASP A 301 LYS A 325 1 25 HELIX 8 AA8 LYS A 359 ILE A 363 5 5 HELIX 9 AA9 SER A 369 SER A 374 1 6 HELIX 10 AB1 LYS A 433 VAL A 437 5 5 HELIX 11 AB2 THR A 475 LEU A 479 5 5 HELIX 12 AB3 CYS A 484 ALA A 504 1 21 HELIX 13 AB4 ASP A 515 ASN A 521 1 7 SHEET 1 AA1 7 GLU A 364 GLU A 365 0 SHEET 2 AA1 7 GLU A 347 ASP A 352 1 N PHE A 350 O GLU A 364 SHEET 3 AA1 7 VAL A 328 ILE A 332 1 N ASP A 331 O LYS A 349 SHEET 4 AA1 7 VAL A 381 TRP A 385 1 O LEU A 383 N HIS A 330 SHEET 5 AA1 7 SER A 396 PHE A 401 1 O ILE A 397 N PHE A 384 SHEET 6 AA1 7 PHE A 506 TYR A 511 -1 O TRP A 509 N VAL A 398 SHEET 7 AA1 7 LEU A 439 GLN A 441 -1 N LYS A 440 O VAL A 510 SHEET 1 AA2 2 TYR A 446 TYR A 447 0 SHEET 2 AA2 2 CYS A 473 ILE A 474 1 O ILE A 474 N TYR A 446 LINK SG CYS A 452 ZN ZN A 601 1555 1555 2.31 LINK SG CYS A 477 ZN ZN A 601 1555 1555 2.24 LINK SG CYS A 484 ZN ZN A 601 1555 1555 2.29 LINK ND1 HIS A 487 ZN ZN A 601 1555 1555 2.11 CRYST1 109.155 109.155 48.640 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009161 0.005289 0.000000 0.00000 SCALE2 0.000000 0.010579 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020559 0.00000