HEADER DNA BINDING PROTEIN/DNA 12-JAN-23 8FTJ TITLE CRYSTAL STRUCTURE OF HUMAN NEIL1 (P2G (242K) C(DELTA)100) GLYCOSYLASE TITLE 2 BOUND TO DNA DUPLEX CONTAINING UREA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDONUCLEASE 8-LIKE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DNA GLYCOSYLASE/AP LYASE NEIL1,DNA-(APURINIC OR APYRIMIDINIC COMPND 5 SITE) LYASE NEIL1,ENDONUCLEASE VIII-LIKE 1,FPG1,NEI HOMOLOG 1,NEH1, COMPND 6 NEI-LIKE PROTEIN 1; COMPND 7 EC: 3.2.2.-,4.2.99.18; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: DNA (5'-D(*CP*GP*TP*CP*CP*AP*UDV*GP*TP*CP*TP*AP*CP)-3'); COMPND 12 CHAIN: D; COMPND 13 ENGINEERED: YES; COMPND 14 OTHER_DETAILS: YB9 IS MODELED INTO THE CHAIN D OF DNA TEMPLATE STRAND COMPND 15 AT POSITION 297; BASICALLY UREA MOIETY IS COVALENTLY LINKED TO RING- COMPND 16 OPENED DEOXYRIBOSE IN YB9 RESIDUE IE. YB9 IS MODIFIED NUCLEOTIDE IN COMPND 17 DNA TEMPLATE STRAND (CHAIN D); COMPND 18 MOL_ID: 3; COMPND 19 MOLECULE: DNA (5'-D(*TP*AP*GP*AP*CP*AP*TP*GP*GP*AP*CP*GP*G)-3'); COMPND 20 CHAIN: F; COMPND 21 ENGINEERED: YES; COMPND 22 OTHER_DETAILS: COMPLEMENTARY DNA STRAND (CHAIN F) TO TEMPLATE STRAND COMPND 23 (CHAIN D) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NEIL1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 15 ORGANISM_TAXID: 32630 KEYWDS BASE-EXCISION REPAIR ENZYME, DNA GLYCOSYLASE, DNA BINDING PROTEIN, KEYWDS 2 DNA BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.TOMAR,P.SHARMA,J.M.HARP,M.EGLI,M.P.STONE REVDAT 3 01-MAY-24 8FTJ 1 REMARK REVDAT 2 17-MAY-23 8FTJ 1 JRNL REVDAT 1 26-APR-23 8FTJ 0 JRNL AUTH R.TOMAR,I.G.MINKO,P.SHARMA,A.H.KELLUM,L.LEI,J.M.HARP, JRNL AUTH 2 T.M.IVERSON,R.S.LLOYD,M.EGLI,M.P.STONE JRNL TITL BASE EXCISION REPAIR OF THE JRNL TITL 2 N-(2-DEOXY-D-ERYTHRO-PENTOFURANOSYL)-UREA LESION BY THE JRNL TITL 3 HNEIL1 GLYCOSYLASE. JRNL REF NUCLEIC ACIDS RES. V. 51 3754 2023 JRNL REFN ESSN 1362-4962 JRNL PMID 37014002 JRNL DOI 10.1093/NAR/GKAD164 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 21043 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 1075 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.8300 - 4.6000 0.99 2685 157 0.1964 0.2005 REMARK 3 2 4.5900 - 3.6500 1.00 2566 121 0.1568 0.1887 REMARK 3 3 3.6500 - 3.1900 0.99 2514 131 0.1932 0.2475 REMARK 3 4 3.1900 - 2.9000 0.99 2479 131 0.2226 0.2443 REMARK 3 5 2.9000 - 2.6900 0.98 2448 136 0.2445 0.3489 REMARK 3 6 2.6900 - 2.5300 0.98 2434 131 0.2417 0.3211 REMARK 3 7 2.5300 - 2.4000 0.98 2433 133 0.2290 0.3231 REMARK 3 8 2.4000 - 2.3000 0.98 2409 135 0.2142 0.2692 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.302 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.250 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2780 REMARK 3 ANGLE : 0.940 3859 REMARK 3 CHIRALITY : 0.051 397 REMARK 3 PLANARITY : 0.010 422 REMARK 3 DIHEDRAL : 22.147 1093 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8FTJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JAN-23. REMARK 100 THE DEPOSITION ID IS D_1000271283. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUN-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 V721.2 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 V721.2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21210 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 15.50 REMARK 200 R MERGE (I) : 0.23000 REMARK 200 R SYM (I) : 0.23000 REMARK 200 FOR THE DATA SET : 16.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 14.60 REMARK 200 R MERGE FOR SHELL (I) : 1.51000 REMARK 200 R SYM FOR SHELL (I) : 1.51000 REMARK 200 FOR SHELL : 1.940 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 1.20 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.01 M MAGNESIUM SULFATE AND 1.8 M REMARK 280 LITHIUM SULFATE, 0.05 M SODIUM CACODYLATE, PH 6.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+3/4 REMARK 290 8555 -Y,-X,-Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.22100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.61050 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 97.83150 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 65.22100 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 97.83150 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 32.61050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 203 REMARK 465 HIS A 204 REMARK 465 ARG A 205 REMARK 465 PRO A 206 REMARK 465 SER A 207 REMARK 465 PRO A 208 REMARK 465 GLU A 209 REMARK 465 LEU A 210 REMARK 465 THR A 211 REMARK 465 LEU A 212 REMARK 465 SER A 213 REMARK 465 GLN A 214 REMARK 465 LYS A 215 REMARK 465 ILE A 216 REMARK 465 ARG A 217 REMARK 465 THR A 218 REMARK 465 LYS A 219 REMARK 465 LEU A 220 REMARK 465 GLN A 221 REMARK 465 GLY A 245 REMARK 465 SER A 246 REMARK 465 GLU A 247 REMARK 465 SER A 248 REMARK 465 GLY A 249 REMARK 465 GLU A 250 REMARK 465 GLU A 251 REMARK 465 LEU A 291 REMARK 465 GLU A 292 REMARK 465 HIS A 293 REMARK 465 HIS A 294 REMARK 465 HIS A 295 REMARK 465 HIS A 296 REMARK 465 HIS A 297 REMARK 465 HIS A 298 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N GLY A 2 N1 YB9 D 297 1.99 REMARK 500 N GLY A 2 O2 YB9 D 297 2.06 REMARK 500 N GLY A 2 C2' YB9 D 297 2.14 REMARK 500 O GLN A 130 O HOH A 401 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DA F 311 O3' DA F 311 C3' -0.039 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA D 296 C3' - O3' - P ANGL. DEV. = 17.5 DEGREES REMARK 500 YB9 D 297 O3' - P - O5' ANGL. DEV. = -13.6 DEGREES REMARK 500 YB9 D 297 O3' - P - OP2 ANGL. DEV. = 10.4 DEGREES REMARK 500 YB9 D 297 C3' - O3' - P ANGL. DEV. = 48.7 DEGREES REMARK 500 DG D 298 O3' - P - O5' ANGL. DEV. = -28.1 DEGREES REMARK 500 DG D 298 O3' - P - OP2 ANGL. DEV. = -14.0 DEGREES REMARK 500 DG D 298 O3' - P - OP1 ANGL. DEV. = 31.9 DEGREES REMARK 500 DG F 313 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 92 51.38 -119.09 REMARK 500 ALA A 200 57.74 -67.38 REMARK 500 LEU A 201 -133.31 -166.57 REMARK 500 CYS A 262 -49.68 -133.58 REMARK 500 REMARK 500 REMARK: NULL DBREF 8FTJ A 2 290 UNP Q96FI4 NEIL1_HUMAN 2 290 DBREF 8FTJ D 291 303 PDB 8FTJ 8FTJ 291 303 DBREF 8FTJ F 306 318 PDB 8FTJ 8FTJ 306 318 SEQADV 8FTJ GLY A 2 UNP Q96FI4 PRO 2 ENGINEERED MUTATION SEQADV 8FTJ LEU A 291 UNP Q96FI4 EXPRESSION TAG SEQADV 8FTJ GLU A 292 UNP Q96FI4 EXPRESSION TAG SEQADV 8FTJ HIS A 293 UNP Q96FI4 EXPRESSION TAG SEQADV 8FTJ HIS A 294 UNP Q96FI4 EXPRESSION TAG SEQADV 8FTJ HIS A 295 UNP Q96FI4 EXPRESSION TAG SEQADV 8FTJ HIS A 296 UNP Q96FI4 EXPRESSION TAG SEQADV 8FTJ HIS A 297 UNP Q96FI4 EXPRESSION TAG SEQADV 8FTJ HIS A 298 UNP Q96FI4 EXPRESSION TAG SEQRES 1 A 297 GLY GLU GLY PRO GLU LEU HIS LEU ALA SER GLN PHE VAL SEQRES 2 A 297 ASN GLU ALA CYS ARG ALA LEU VAL PHE GLY GLY CYS VAL SEQRES 3 A 297 GLU LYS SER SER VAL SER ARG ASN PRO GLU VAL PRO PHE SEQRES 4 A 297 GLU SER SER ALA TYR ARG ILE SER ALA SER ALA ARG GLY SEQRES 5 A 297 LYS GLU LEU ARG LEU ILE LEU SER PRO LEU PRO GLY ALA SEQRES 6 A 297 GLN PRO GLN GLN GLU PRO LEU ALA LEU VAL PHE ARG PHE SEQRES 7 A 297 GLY MET SER GLY SER PHE GLN LEU VAL PRO ARG GLU GLU SEQRES 8 A 297 LEU PRO ARG HIS ALA HIS LEU ARG PHE TYR THR ALA PRO SEQRES 9 A 297 PRO GLY PRO ARG LEU ALA LEU CYS PHE VAL ASP ILE ARG SEQRES 10 A 297 ARG PHE GLY ARG TRP ASP LEU GLY GLY LYS TRP GLN PRO SEQRES 11 A 297 GLY ARG GLY PRO CYS VAL LEU GLN GLU TYR GLN GLN PHE SEQRES 12 A 297 ARG GLU ASN VAL LEU ARG ASN LEU ALA ASP LYS ALA PHE SEQRES 13 A 297 ASP ARG PRO ILE CYS GLU ALA LEU LEU ASP GLN ARG PHE SEQRES 14 A 297 PHE ASN GLY ILE GLY ASN TYR LEU ARG ALA GLU ILE LEU SEQRES 15 A 297 TYR ARG LEU LYS ILE PRO PRO PHE GLU LYS ALA ARG SER SEQRES 16 A 297 VAL LEU GLU ALA LEU GLN GLN HIS ARG PRO SER PRO GLU SEQRES 17 A 297 LEU THR LEU SER GLN LYS ILE ARG THR LYS LEU GLN ASN SEQRES 18 A 297 PRO ASP LEU LEU GLU LEU CYS HIS SER VAL PRO LYS GLU SEQRES 19 A 297 VAL VAL GLN LEU GLY GLY LYS GLY TYR GLY SER GLU SER SEQRES 20 A 297 GLY GLU GLU ASP PHE ALA ALA PHE ARG ALA TRP LEU ARG SEQRES 21 A 297 CYS TYR GLY MET PRO GLY MET SER SER LEU GLN ASP ARG SEQRES 22 A 297 HIS GLY ARG THR ILE TRP PHE GLN GLY ASP PRO GLY PRO SEQRES 23 A 297 LEU ALA PRO LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 D 13 DC DG DT DC DC DA YB9 DG DT DC DT DA DC SEQRES 1 F 13 DT DA DG DA DC DA DT DG DG DA DC DG DG HET YB9 D 297 15 HET EDO A 301 4 HET EDO A 302 4 HET EDO A 303 4 HET SO4 A 304 5 HET SO4 A 305 5 HET SO4 A 306 5 HETNAM YB9 1-CARBAMAMIDO-1,2-DIDEOXY-5-O-PHOSPHONO-L-THREO- HETNAM 2 YB9 PENTITOL HETNAM EDO 1,2-ETHANEDIOL HETNAM SO4 SULFATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 YB9 C6 H15 N2 O7 P FORMUL 4 EDO 3(C2 H6 O2) FORMUL 7 SO4 3(O4 S 2-) FORMUL 10 HOH *127(H2 O) HELIX 1 AA1 GLU A 3 CYS A 18 1 16 HELIX 2 AA2 GLU A 140 ARG A 150 1 11 HELIX 3 AA3 ASP A 154 ARG A 159 5 6 HELIX 4 AA4 PRO A 160 LEU A 165 1 6 HELIX 5 AA5 GLY A 175 LYS A 187 1 13 HELIX 6 AA6 LYS A 193 ALA A 200 1 8 HELIX 7 AA7 ASP A 224 GLY A 240 1 17 HELIX 8 AA8 PHE A 253 LEU A 260 1 8 SHEET 1 AA1 5 PHE A 23 CYS A 26 0 SHEET 2 AA1 5 GLU A 41 ARG A 52 -1 O TYR A 45 N PHE A 23 SHEET 3 AA1 5 GLU A 55 PRO A 62 -1 O ARG A 57 N SER A 50 SHEET 4 AA1 5 LEU A 73 ARG A 78 -1 O LEU A 75 N LEU A 58 SHEET 5 AA1 5 ARG A 122 LEU A 125 -1 O ARG A 122 N ARG A 78 SHEET 1 AA2 4 GLU A 28 LYS A 29 0 SHEET 2 AA2 4 ALA A 97 TYR A 102 -1 O ARG A 100 N GLU A 28 SHEET 3 AA2 4 LEU A 110 ASP A 116 -1 O LEU A 112 N PHE A 101 SHEET 4 AA2 4 GLY A 83 PRO A 89 -1 N GLN A 86 O CYS A 113 SHEET 1 AA3 2 SER A 269 GLN A 272 0 SHEET 2 AA3 2 THR A 278 PHE A 281 -1 O ILE A 279 N LEU A 271 LINK N GLY A 2 C1' YB9 D 297 1555 1555 1.47 LINK O3' DA D 296 P YB9 D 297 1555 1555 1.59 LINK O3' YB9 D 297 P DG D 298 1555 1555 1.60 CISPEP 1 GLN A 67 PRO A 68 0 -7.71 CISPEP 2 PRO A 105 PRO A 106 0 12.39 CRYST1 83.662 83.662 130.442 90.00 90.00 90.00 P 41 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011953 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011953 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007666 0.00000