HEADER ANTIVIRAL PROTEIN 19-JAN-23 8FVI TITLE HUMAN APOBEC3H BOUND TO HIV-1 VIF IN COMPLEX WITH CBF-BETA, ELOB, TITLE 2 ELOC, AND CUL5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CORE-BINDING FACTOR SUBUNIT BETA; COMPND 3 CHAIN: 0; COMPND 4 FRAGMENT: UNP RESIDUES 1-157; COMPND 5 SYNONYM: CBF-BETA,POLYOMAVIRUS ENHANCER-BINDING PROTEIN 2 BETA COMPND 6 SUBUNIT,PEA2-BETA,PEBP2-BETA,SL3-3 ENHANCER FACTOR 1 SUBUNIT BETA, COMPND 7 SL3/AKV CORE-BINDING FACTOR BETA SUBUNIT; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: VIRION INFECTIVITY FACTOR; COMPND 11 CHAIN: 1; COMPND 12 SYNONYM: VIF,SOR PROTEIN; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: DNA DC->DU-EDITING ENZYME APOBEC-3H; COMPND 16 CHAIN: A; COMPND 17 SYNONYM: APOBEC-RELATED PROTEIN 10,ARP-10,APOLIPOPROTEIN B MRNA- COMPND 18 EDITING ENZYME CATALYTIC POLYPEPTIDE-LIKE 3H,A3H; COMPND 19 EC: 3.5.4.38; COMPND 20 ENGINEERED: YES; COMPND 21 MOL_ID: 4; COMPND 22 MOLECULE: RNA(5'-R(AP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3'); COMPND 23 CHAIN: B; COMPND 24 MOL_ID: 5; COMPND 25 MOLECULE: RNA(5'-R(*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'); COMPND 26 CHAIN: C; COMPND 27 MOL_ID: 6; COMPND 28 MOLECULE: CULLIN 5; COMPND 29 CHAIN: x; COMPND 30 ENGINEERED: YES; COMPND 31 MOL_ID: 7; COMPND 32 MOLECULE: ELONGIN-B; COMPND 33 CHAIN: y; COMPND 34 SYNONYM: ELOB,ELONGIN 18 KDA SUBUNIT,RNA POLYMERASE II TRANSCRIPTION COMPND 35 FACTOR SIII SUBUNIT B,SIII P18,TRANSCRIPTION ELONGATION FACTOR B COMPND 36 POLYPEPTIDE 2; COMPND 37 ENGINEERED: YES; COMPND 38 MOL_ID: 8; COMPND 39 MOLECULE: ELONGIN-C; COMPND 40 CHAIN: z; COMPND 41 SYNONYM: ELOC, ELONGIN 15 KDA SUBUNIT, RNA POLYMERASE II COMPND 42 TRANSCRIPTION FACTOR SIII SUBUNIT C, SIII P15, TRANSCRIPTION COMPND 43 ELONGATION FACTOR B POLYPEPTIDE 1; COMPND 44 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CBFB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 10 ORGANISM_TAXID: 11676; SOURCE 11 STRAIN: PNL4-3; SOURCE 12 GENE: VIF; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 GENE: APOBEC3H; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 22 MOL_ID: 4; SOURCE 23 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 24 ORGANISM_TAXID: 562; SOURCE 25 MOL_ID: 5; SOURCE 26 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 27 ORGANISM_TAXID: 562; SOURCE 28 MOL_ID: 6; SOURCE 29 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 30 ORGANISM_COMMON: HUMAN; SOURCE 31 ORGANISM_TAXID: 9606; SOURCE 32 GENE: CUL5; SOURCE 33 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 34 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 35 MOL_ID: 7; SOURCE 36 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 37 ORGANISM_COMMON: HUMAN; SOURCE 38 ORGANISM_TAXID: 9606; SOURCE 39 GENE: ELOB, TCEB2; SOURCE 40 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 41 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 42 MOL_ID: 8; SOURCE 43 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 44 ORGANISM_COMMON: HUMAN; SOURCE 45 ORGANISM_TAXID: 9606; SOURCE 46 GENE: ELOC, TCEB1; SOURCE 47 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 48 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS VIRUS-HOST PROTEIN COMPLEX, ANTIVIRAL PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR F.ITO,A.L.ALVAREZ-CABRERA,Z.H.ZHOU,X.S.CHEN REVDAT 2 01-MAY-24 8FVI 1 JRNL REVDAT 1 06-SEP-23 8FVI 0 JRNL AUTH F.ITO,A.L.ALVAREZ-CABRERA,K.KIM,Z.H.ZHOU,X.S.CHEN JRNL TITL STRUCTURAL BASIS OF HIV-1 VIF-MEDIATED E3 LIGASE TARGETING JRNL TITL 2 OF HOST APOBEC3H. JRNL REF NAT COMMUN V. 14 5241 2023 JRNL REFN ESSN 2041-1723 JRNL PMID 37640699 JRNL DOI 10.1038/S41467-023-40955-X REMARK 2 REMARK 2 RESOLUTION. 3.24 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, EPU, CRYOSPARC, CRYOSPARC, REMARK 3 CRYOSPARC, CRYOSPARC, CRYOSPARC REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.240 REMARK 3 NUMBER OF PARTICLES : 89986 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8FVI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JAN-23. REMARK 100 THE DEPOSITION ID IS D_1000271466. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : HETERO-HEXAMERIC COMPLEX OF HIV REMARK 245 -1 VIF AND HUMAN APOBEC3H, CBF- REMARK 245 BETA, ELOB, ELOC, AND CUL5 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.15 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 14725 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 3000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 165000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: 0, 1, A, B, C, x, y, z REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET 0 1 REMARK 465 PRO 0 2 REMARK 465 ARG 0 3 REMARK 465 VAL 0 4 REMARK 465 VAL 0 5 REMARK 465 PRO 0 6 REMARK 465 ARG 0 78 REMARK 465 GLN 0 79 REMARK 465 THR 0 80 REMARK 465 PRO 0 81 REMARK 465 SER 0 82 REMARK 465 ARG 0 83 REMARK 465 GLU 0 84 REMARK 465 GLU 0 89 REMARK 465 ARG 0 90 REMARK 465 GLU 0 91 REMARK 465 ALA 0 92 REMARK 465 GLY 0 93 REMARK 465 LYS 0 94 REMARK 465 GLY 1 -1 REMARK 465 PRO 1 0 REMARK 465 MET 1 1 REMARK 465 GLU 1 2 REMARK 465 GLY 1 75 REMARK 465 GLU 1 76 REMARK 465 ARG 1 77 REMARK 465 ASP 1 78 REMARK 465 TRP 1 79 REMARK 465 HIS 1 80 REMARK 465 LEU 1 81 REMARK 465 LYS 1 142 REMARK 465 LYS 1 158 REMARK 465 GLN 1 159 REMARK 465 ARG 1 174 REMARK 465 TRP 1 175 REMARK 465 ASN 1 176 REMARK 465 LYS 1 177 REMARK 465 GLY A -6 REMARK 465 PRO A -5 REMARK 465 GLY A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 GLY A -1 REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLY x 7 REMARK 465 PRO x 8 REMARK 465 ALA x 9 REMARK 465 GLY x 10 REMARK 465 SER x 11 REMARK 465 MET x 119 REMARK 465 GLY x 120 REMARK 465 LYS x 121 REMARK 465 GLN x 122 REMARK 465 GLY x 123 REMARK 465 SER x 124 REMARK 465 ASN x 125 REMARK 465 LYS x 126 REMARK 465 LYS x 127 REMARK 465 SER x 128 REMARK 465 ASN x 129 REMARK 465 VAL x 130 REMARK 465 GLU x 131 REMARK 465 ASP x 132 REMARK 465 LYS x 152 REMARK 465 ASN x 153 REMARK 465 ARG x 154 REMARK 465 LEU x 155 REMARK 465 GLN x 156 REMARK 465 ASP x 157 REMARK 465 SER x 158 REMARK 465 ALA x 159 REMARK 465 MET x 160 REMARK 465 LYS x 161 REMARK 465 LEU x 162 REMARK 465 VAL x 163 REMARK 465 HIS x 164 REMARK 465 ALA x 165 REMARK 465 GLU x 166 REMARK 465 ARG x 167 REMARK 465 LEU x 168 REMARK 465 GLY x 169 REMARK 465 GLU x 170 REMARK 465 ALA x 171 REMARK 465 PHE x 172 REMARK 465 ASP x 173 REMARK 465 SER x 174 REMARK 465 GLN x 175 REMARK 465 LEU x 176 REMARK 465 VAL x 177 REMARK 465 ILE x 178 REMARK 465 GLY x 179 REMARK 465 VAL x 180 REMARK 465 ARG x 181 REMARK 465 GLU x 182 REMARK 465 SER x 183 REMARK 465 TYR x 184 REMARK 465 VAL x 185 REMARK 465 ASN x 186 REMARK 465 LEU x 187 REMARK 465 CYS x 188 REMARK 465 SER x 189 REMARK 465 ASN x 190 REMARK 465 PRO x 191 REMARK 465 GLU x 192 REMARK 465 ASP x 193 REMARK 465 LYS x 194 REMARK 465 LEU x 195 REMARK 465 GLN x 196 REMARK 465 ILE x 197 REMARK 465 TYR x 198 REMARK 465 ARG x 199 REMARK 465 ASP x 200 REMARK 465 ASN x 201 REMARK 465 PHE x 202 REMARK 465 GLU x 203 REMARK 465 LYS x 204 REMARK 465 ALA x 205 REMARK 465 TYR x 206 REMARK 465 LEU x 207 REMARK 465 ASP x 208 REMARK 465 SER x 209 REMARK 465 THR x 210 REMARK 465 GLU x 211 REMARK 465 ARG x 212 REMARK 465 PHE x 213 REMARK 465 TYR x 214 REMARK 465 ARG x 215 REMARK 465 THR x 216 REMARK 465 GLN x 217 REMARK 465 ALA x 218 REMARK 465 PRO x 219 REMARK 465 SER x 220 REMARK 465 TYR x 221 REMARK 465 LEU x 222 REMARK 465 GLN x 223 REMARK 465 GLN x 224 REMARK 465 ASN x 225 REMARK 465 GLY x 226 REMARK 465 VAL x 227 REMARK 465 GLN x 228 REMARK 465 ASN x 229 REMARK 465 TYR x 230 REMARK 465 MET x 231 REMARK 465 LYS x 232 REMARK 465 TYR x 233 REMARK 465 ALA x 234 REMARK 465 ASP x 235 REMARK 465 ALA x 236 REMARK 465 LYS x 237 REMARK 465 LEU x 238 REMARK 465 LYS x 239 REMARK 465 GLU x 240 REMARK 465 GLU x 241 REMARK 465 GLU x 242 REMARK 465 LYS x 243 REMARK 465 ARG x 244 REMARK 465 ALA x 245 REMARK 465 LEU x 246 REMARK 465 ARG x 247 REMARK 465 TYR x 248 REMARK 465 LEU x 249 REMARK 465 GLU x 250 REMARK 465 THR x 251 REMARK 465 ARG x 252 REMARK 465 ARG x 253 REMARK 465 GLU x 254 REMARK 465 CYS x 255 REMARK 465 ASN x 256 REMARK 465 SER x 257 REMARK 465 VAL x 258 REMARK 465 GLU x 259 REMARK 465 ALA x 260 REMARK 465 LEU x 261 REMARK 465 MET x 262 REMARK 465 GLU x 263 REMARK 465 CYS x 264 REMARK 465 CYS x 265 REMARK 465 VAL x 266 REMARK 465 ASN x 267 REMARK 465 ALA x 268 REMARK 465 LEU x 269 REMARK 465 VAL x 270 REMARK 465 THR x 271 REMARK 465 SER x 272 REMARK 465 PHE x 273 REMARK 465 LYS x 274 REMARK 465 GLU x 275 REMARK 465 THR x 276 REMARK 465 ILE x 277 REMARK 465 LEU x 278 REMARK 465 ALA x 279 REMARK 465 GLU x 280 REMARK 465 CYS x 281 REMARK 465 GLN x 282 REMARK 465 GLY x 283 REMARK 465 MET x 284 REMARK 465 ILE x 285 REMARK 465 LYS x 286 REMARK 465 ARG x 287 REMARK 465 ASN x 288 REMARK 465 GLU x 289 REMARK 465 THR x 290 REMARK 465 GLU x 291 REMARK 465 LYS x 292 REMARK 465 LEU x 293 REMARK 465 HIS x 294 REMARK 465 LEU x 295 REMARK 465 MET x 296 REMARK 465 PHE x 297 REMARK 465 SER x 298 REMARK 465 LEU x 299 REMARK 465 MET x 300 REMARK 465 ASP x 301 REMARK 465 LYS x 302 REMARK 465 VAL x 303 REMARK 465 PRO x 304 REMARK 465 ASN x 305 REMARK 465 GLY x 306 REMARK 465 ILE x 307 REMARK 465 GLU x 308 REMARK 465 PRO x 309 REMARK 465 MET x 310 REMARK 465 LEU x 311 REMARK 465 LYS x 312 REMARK 465 ASP x 313 REMARK 465 LEU x 314 REMARK 465 GLU x 315 REMARK 465 GLU x 316 REMARK 465 HIS x 317 REMARK 465 ILE x 318 REMARK 465 ILE x 319 REMARK 465 SER x 320 REMARK 465 PHE y 79 REMARK 465 ARG y 80 REMARK 465 ALA y 81 REMARK 465 ASP y 82 REMARK 465 ASP y 83 REMARK 465 THR y 84 REMARK 465 PHE y 85 REMARK 465 GLU y 86 REMARK 465 ALA y 87 REMARK 465 LEU y 88 REMARK 465 PRO y 97 REMARK 465 GLU y 98 REMARK 465 LEU y 99 REMARK 465 PRO y 100 REMARK 465 ASP y 101 REMARK 465 VAL y 102 REMARK 465 GLY z 50 REMARK 465 GLN z 51 REMARK 465 PHE z 52 REMARK 465 ALA z 53 REMARK 465 GLU z 54 REMARK 465 ASN z 55 REMARK 465 GLU z 56 REMARK 465 THR z 57 REMARK 465 CYS z 112 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG 0 33 CG CD NE CZ NH1 NH2 REMARK 470 ARG 0 35 CG CD NE CZ NH1 NH2 REMARK 470 GLU 0 38 CG CD OE1 OE2 REMARK 470 GLU A 56 CG CD OE1 OE2 REMARK 470 A C 9 C5' C4' O4' C3' O3' C2' O2' REMARK 470 A C 9 C1' N9 C8 N7 C5 C6 N6 REMARK 470 A C 9 N1 C2 N3 C4 REMARK 470 ILE x 73 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 11 OH TYR A 24 2.02 REMARK 500 O PRO 1 58 OH TYR 1 111 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER 0 22 79.16 -100.55 REMARK 500 ARG 0 23 31.44 -142.10 REMARK 500 PHE 0 32 33.27 -90.17 REMARK 500 LEU 0 119 23.65 -145.32 REMARK 500 TRP 1 70 -64.47 -99.02 REMARK 500 LEU 1 72 -166.79 -79.14 REMARK 500 SER 1 118 56.31 -95.92 REMARK 500 ARG A 20 -171.74 59.82 REMARK 500 LYS A 52 -51.86 70.60 REMARK 500 SER A 83 163.29 70.93 REMARK 500 GLN A 130 -4.53 72.74 REMARK 500 PHE A 157 87.52 56.51 REMARK 500 SER A 170 35.65 -93.53 REMARK 500 PHE x 15 -2.88 68.69 REMARK 500 ASP x 17 16.55 55.12 REMARK 500 GLN x 32 60.49 60.05 REMARK 500 ASP x 55 -2.26 67.78 REMARK 500 PRO x 58 1.08 -61.48 REMARK 500 PHE x 111 53.00 -92.75 REMARK 500 HIS y 10 -110.29 60.74 REMARK 500 ARG y 29 -67.80 -93.38 REMARK 500 ASP y 47 -111.75 53.32 REMARK 500 LEU y 50 -4.23 67.51 REMARK 500 ASP y 52 -129.64 56.52 REMARK 500 LYS y 55 -6.21 69.83 REMARK 500 VAL y 75 -58.42 -123.01 REMARK 500 LEU z 110 -62.47 -95.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN 1 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS 1 108 NE2 REMARK 620 2 CYS 1 114 SG 125.7 REMARK 620 3 CYS 1 133 SG 99.9 117.5 REMARK 620 4 HIS 1 139 NE2 104.1 113.4 89.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 54 ND1 REMARK 620 2 CYS A 85 SG 107.2 REMARK 620 3 CYS A 88 SG 112.3 106.6 REMARK 620 N 1 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-29489 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-29490 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-29488 RELATED DB: EMDB REMARK 900 HUMAN APOBEC3H BOUND TO HIV-1 VIF IN COMPLEX WITH CBF-BETA, ELOB, REMARK 900 ELOC, AND CUL5 DBREF 8FVI 0 1 157 UNP Q13951 PEBB_HUMAN 1 157 DBREF 8FVI 1 1 177 UNP P12504 VIF_HV1N5 1 176 DBREF 8FVI A 1 181 UNP Q6NTF7 ABC3H_HUMAN 1 181 DBREF 8FVI B 2 11 PDB 8FVI 8FVI 2 11 DBREF 8FVI C 1 9 PDB 8FVI 8FVI 1 9 DBREF1 8FVI x 11 320 UNP A0A2K5ZN28_MANLE DBREF2 8FVI x A0A2K5ZN28 9 318 DBREF 8FVI y 1 102 UNP Q15370 ELOB_HUMAN 1 102 DBREF 8FVI z 17 112 UNP Q15369 ELOC_HUMAN 17 112 SEQADV 8FVI GLY 1 -1 UNP P12504 EXPRESSION TAG SEQADV 8FVI PRO 1 0 UNP P12504 EXPRESSION TAG SEQADV 8FVI HIS 1 48 UNP P12504 ASN 48 CONFLICT SEQADV 8FVI GLY A -6 UNP Q6NTF7 EXPRESSION TAG SEQADV 8FVI PRO A -5 UNP Q6NTF7 EXPRESSION TAG SEQADV 8FVI GLY A -4 UNP Q6NTF7 EXPRESSION TAG SEQADV 8FVI GLY A -3 UNP Q6NTF7 EXPRESSION TAG SEQADV 8FVI SER A -2 UNP Q6NTF7 EXPRESSION TAG SEQADV 8FVI GLY A -1 UNP Q6NTF7 EXPRESSION TAG SEQADV 8FVI GLY A 0 UNP Q6NTF7 EXPRESSION TAG SEQADV 8FVI GLN A 97 UNP Q6NTF7 LYS 97 CONFLICT SEQADV 8FVI ARG A 105 UNP Q6NTF7 GLY 105 VARIANT SEQADV 8FVI ASP A 121 UNP Q6NTF7 LYS 121 CONFLICT SEQADV 8FVI ASP A 178 UNP Q6NTF7 GLU 178 VARIANT SEQADV 8FVI SER A 182 UNP Q6NTF7 EXPRESSION TAG SEQADV 8FVI GLY x 7 UNP A0A2K5ZN2 EXPRESSION TAG SEQADV 8FVI PRO x 8 UNP A0A2K5ZN2 EXPRESSION TAG SEQADV 8FVI ALA x 9 UNP A0A2K5ZN2 EXPRESSION TAG SEQADV 8FVI GLY x 10 UNP A0A2K5ZN2 EXPRESSION TAG SEQRES 1 0 157 MET PRO ARG VAL VAL PRO ASP GLN ARG SER LYS PHE GLU SEQRES 2 0 157 ASN GLU GLU PHE PHE ARG LYS LEU SER ARG GLU CYS GLU SEQRES 3 0 157 ILE LYS TYR THR GLY PHE ARG ASP ARG PRO HIS GLU GLU SEQRES 4 0 157 ARG GLN ALA ARG PHE GLN ASN ALA CYS ARG ASP GLY ARG SEQRES 5 0 157 SER GLU ILE ALA PHE VAL ALA THR GLY THR ASN LEU SER SEQRES 6 0 157 LEU GLN PHE PHE PRO ALA SER TRP GLN GLY GLU GLN ARG SEQRES 7 0 157 GLN THR PRO SER ARG GLU TYR VAL ASP LEU GLU ARG GLU SEQRES 8 0 157 ALA GLY LYS VAL TYR LEU LYS ALA PRO MET ILE LEU ASN SEQRES 9 0 157 GLY VAL CYS VAL ILE TRP LYS GLY TRP ILE ASP LEU GLN SEQRES 10 0 157 ARG LEU ASP GLY MET GLY CYS LEU GLU PHE ASP GLU GLU SEQRES 11 0 157 ARG ALA GLN GLN GLU ASP ALA LEU ALA GLN GLN ALA PHE SEQRES 12 0 157 GLU GLU ALA ARG ARG ARG THR ARG GLU PHE GLU ASP ARG SEQRES 13 0 157 ASP SEQRES 1 1 178 GLY PRO MET GLU ASN ARG TRP GLN VAL MET ILE VAL TRP SEQRES 2 1 178 GLN VAL ASP ARG MET ARG ILE ASN THR TRP LYS ARG LEU SEQRES 3 1 178 VAL LYS HIS HIS MET TYR ILE SER ARG LYS ALA LYS ASP SEQRES 4 1 178 TRP PHE TYR ARG HIS HIS TYR GLU SER THR HIS PRO LYS SEQRES 5 1 178 ILE SER SER GLU VAL HIS ILE PRO LEU GLY ASP ALA LYS SEQRES 6 1 178 LEU VAL ILE THR THR TYR TRP GLY LEU HIS THR GLY GLU SEQRES 7 1 178 ARG ASP TRP HIS LEU GLY GLN GLY VAL SER ILE GLU TRP SEQRES 8 1 178 ARG LYS LYS ARG TYR SER THR GLN VAL ASP PRO ASP LEU SEQRES 9 1 178 ALA ASP GLN LEU ILE HIS LEU HIS TYR PHE ASP CYS PHE SEQRES 10 1 178 SER GLU SER ALA ILE ARG ASN THR ILE LEU GLY ARG ILE SEQRES 11 1 178 VAL SER PRO ARG CYS GLU TYR GLN ALA GLY HIS ASN LYS SEQRES 12 1 178 VAL GLY SER LEU GLN TYR LEU ALA LEU ALA ALA LEU ILE SEQRES 13 1 178 LYS PRO LYS GLN ILE LYS PRO PRO LEU PRO SER VAL ARG SEQRES 14 1 178 LYS LEU THR GLU ASP ARG TRP ASN LYS SEQRES 1 A 189 GLY PRO GLY GLY SER GLY GLY MET ALA LEU LEU THR ALA SEQRES 2 A 189 GLU THR PHE ARG LEU GLN PHE ASN ASN LYS ARG ARG LEU SEQRES 3 A 189 ARG ARG PRO TYR TYR PRO ARG LYS ALA LEU LEU CYS TYR SEQRES 4 A 189 GLN LEU THR PRO GLN ASN GLY SER THR PRO THR ARG GLY SEQRES 5 A 189 TYR PHE GLU ASN LYS LYS LYS CYS HIS ALA GLU ILE CYS SEQRES 6 A 189 PHE ILE ASN GLU ILE LYS SER MET GLY LEU ASP GLU THR SEQRES 7 A 189 GLN CYS TYR GLN VAL THR CYS TYR LEU THR TRP SER PRO SEQRES 8 A 189 CYS SER SER CYS ALA TRP GLU LEU VAL ASP PHE ILE GLN SEQRES 9 A 189 ALA HIS ASP HIS LEU ASN LEU ARG ILE PHE ALA SER ARG SEQRES 10 A 189 LEU TYR TYR HIS TRP CYS LYS PRO GLN GLN ASP GLY LEU SEQRES 11 A 189 ARG LEU LEU CYS GLY SER GLN VAL PRO VAL GLU VAL MET SEQRES 12 A 189 GLY PHE PRO GLU PHE ALA ASP CYS TRP GLU ASN PHE VAL SEQRES 13 A 189 ASP HIS GLU LYS PRO LEU SER PHE ASN PRO TYR LYS MET SEQRES 14 A 189 LEU GLU GLU LEU ASP LYS ASN SER ARG ALA ILE LYS ARG SEQRES 15 A 189 ARG LEU ASP ARG ILE LYS SER SEQRES 1 B 10 A U U U U U U U U U SEQRES 1 C 9 A A A A A A A A A SEQRES 1 x 314 GLY PRO ALA GLY SER SER LEU GLN PHE GLU ASP LYS TRP SEQRES 2 x 314 ASP PHE MET ARG PRO ILE VAL LEU LYS LEU LEU ARG GLN SEQRES 3 x 314 GLU SER VAL THR LYS GLN GLN TRP PHE ASP LEU PHE SER SEQRES 4 x 314 ASP VAL HIS ALA VAL CYS LEU TRP ASP ASP LYS GLY PRO SEQRES 5 x 314 ALA LYS ILE HIS GLN ALA LEU LYS GLU ASP ILE LEU GLU SEQRES 6 x 314 PHE ILE LYS GLN ALA GLN ALA ARG VAL LEU SER HIS GLN SEQRES 7 x 314 ASP ASP THR ALA LEU LEU LYS ALA TYR ILE VAL GLU TRP SEQRES 8 x 314 ARG LYS PHE PHE THR GLN CYS ASP ILE LEU PRO LYS PRO SEQRES 9 x 314 PHE CYS GLN LEU GLU ILE THR LEU MET GLY LYS GLN GLY SEQRES 10 x 314 SER ASN LYS LYS SER ASN VAL GLU ASP SER ILE VAL ARG SEQRES 11 x 314 LYS LEU MET LEU ASP THR TRP ASN GLU SER ILE PHE SER SEQRES 12 x 314 ASN ILE LYS ASN ARG LEU GLN ASP SER ALA MET LYS LEU SEQRES 13 x 314 VAL HIS ALA GLU ARG LEU GLY GLU ALA PHE ASP SER GLN SEQRES 14 x 314 LEU VAL ILE GLY VAL ARG GLU SER TYR VAL ASN LEU CYS SEQRES 15 x 314 SER ASN PRO GLU ASP LYS LEU GLN ILE TYR ARG ASP ASN SEQRES 16 x 314 PHE GLU LYS ALA TYR LEU ASP SER THR GLU ARG PHE TYR SEQRES 17 x 314 ARG THR GLN ALA PRO SER TYR LEU GLN GLN ASN GLY VAL SEQRES 18 x 314 GLN ASN TYR MET LYS TYR ALA ASP ALA LYS LEU LYS GLU SEQRES 19 x 314 GLU GLU LYS ARG ALA LEU ARG TYR LEU GLU THR ARG ARG SEQRES 20 x 314 GLU CYS ASN SER VAL GLU ALA LEU MET GLU CYS CYS VAL SEQRES 21 x 314 ASN ALA LEU VAL THR SER PHE LYS GLU THR ILE LEU ALA SEQRES 22 x 314 GLU CYS GLN GLY MET ILE LYS ARG ASN GLU THR GLU LYS SEQRES 23 x 314 LEU HIS LEU MET PHE SER LEU MET ASP LYS VAL PRO ASN SEQRES 24 x 314 GLY ILE GLU PRO MET LEU LYS ASP LEU GLU GLU HIS ILE SEQRES 25 x 314 ILE SER SEQRES 1 y 102 MET ASP VAL PHE LEU MET ILE ARG ARG HIS LYS THR THR SEQRES 2 y 102 ILE PHE THR ASP ALA LYS GLU SER SER THR VAL PHE GLU SEQRES 3 y 102 LEU LYS ARG ILE VAL GLU GLY ILE LEU LYS ARG PRO PRO SEQRES 4 y 102 ASP GLU GLN ARG LEU TYR LYS ASP ASP GLN LEU LEU ASP SEQRES 5 y 102 ASP GLY LYS THR LEU GLY GLU CYS GLY PHE THR SER GLN SEQRES 6 y 102 THR ALA ARG PRO GLN ALA PRO ALA THR VAL GLY LEU ALA SEQRES 7 y 102 PHE ARG ALA ASP ASP THR PHE GLU ALA LEU CYS ILE GLU SEQRES 8 y 102 PRO PHE SER SER PRO PRO GLU LEU PRO ASP VAL SEQRES 1 z 96 MET TYR VAL LYS LEU ILE SER SER ASP GLY HIS GLU PHE SEQRES 2 z 96 ILE VAL LYS ARG GLU HIS ALA LEU THR SER GLY THR ILE SEQRES 3 z 96 LYS ALA MET LEU SER GLY PRO GLY GLN PHE ALA GLU ASN SEQRES 4 z 96 GLU THR ASN GLU VAL ASN PHE ARG GLU ILE PRO SER HIS SEQRES 5 z 96 VAL LEU SER LYS VAL CYS MET TYR PHE THR TYR LYS VAL SEQRES 6 z 96 ARG TYR THR ASN SER SER THR GLU ILE PRO GLU PHE PRO SEQRES 7 z 96 ILE ALA PRO GLU ILE ALA LEU GLU LEU LEU MET ALA ALA SEQRES 8 z 96 ASN PHE LEU ASP CYS HET ZN 1 201 1 HET ZN A 401 1 HETNAM ZN ZINC ION FORMUL 9 ZN 2(ZN 2+) FORMUL 11 HOH *(H2 O) HELIX 1 AA1 ASP 0 7 GLU 0 15 1 9 HELIX 2 AA2 GLU 0 15 SER 0 22 1 8 HELIX 3 AA3 PRO 0 36 ASP 0 50 1 15 HELIX 4 AA4 SER 0 72 GLN 0 74 5 3 HELIX 5 AA5 ASP 0 128 GLU 0 135 1 8 HELIX 6 AA6 ALA 0 137 ARG 0 149 1 13 HELIX 7 AA7 ASP 1 14 TYR 1 30 1 17 HELIX 8 AA8 ASP 1 99 LEU 1 109 1 11 HELIX 9 AA9 SER 1 116 SER 1 118 5 3 HELIX 10 AB1 ALA 1 119 GLY 1 126 1 8 HELIX 11 AB2 TYR 1 135 HIS 1 139 5 5 HELIX 12 AB3 SER 1 145 ILE 1 155 1 11 HELIX 13 AB4 SER 1 166 THR 1 171 1 6 HELIX 14 AB5 THR A 5 PHE A 13 1 9 HELIX 15 AB6 HIS A 54 GLY A 67 1 14 HELIX 16 AB7 CYS A 85 HIS A 99 1 15 HELIX 17 AB8 CYS A 116 SER A 129 1 14 HELIX 18 AB9 GLY A 137 PHE A 148 1 12 HELIX 19 AC1 ASN A 158 SER A 170 1 13 HELIX 20 AC2 ARG A 171 LYS A 181 1 11 HELIX 21 AC3 LYS x 18 LEU x 30 1 13 HELIX 22 AC4 ARG x 31 GLU x 33 5 3 HELIX 23 AC5 THR x 36 ASP x 54 1 19 HELIX 24 AC6 LYS x 56 SER x 82 1 27 HELIX 25 AC7 ASP x 85 LEU x 107 1 23 HELIX 26 AC8 PHE x 111 LEU x 118 1 8 HELIX 27 AC9 ILE x 134 ILE x 147 1 14 HELIX 28 AD1 THR y 23 LYS y 28 1 6 HELIX 29 AD2 VAL y 31 LYS y 36 5 6 HELIX 30 AD3 THR y 56 GLY y 61 1 6 HELIX 31 AD4 THR y 63 ALA y 67 5 5 HELIX 32 AD5 LYS z 32 LEU z 37 1 6 HELIX 33 AD6 SER z 39 SER z 47 1 9 HELIX 34 AD7 PRO z 66 THR z 84 1 19 HELIX 35 AD8 ALA z 96 ASP z 111 1 16 SHEET 1 AA1 7 ALA 0 99 LEU 0 103 0 SHEET 2 AA1 7 VAL 0 106 TRP 0 113 -1 O VAL 0 108 N MET 0 101 SHEET 3 AA1 7 ASP 0 120 PHE 0 127 -1 O CYS 0 124 N LYS 0 111 SHEET 4 AA1 7 CYS 0 25 THR 0 30 -1 N ILE 0 27 O GLY 0 121 SHEET 5 AA1 7 ILE 0 55 PHE 0 57 -1 O ALA 0 56 N THR 0 30 SHEET 6 AA1 7 LEU 0 64 PRO 0 70 -1 O PHE 0 68 N ILE 0 55 SHEET 7 AA1 7 TRP 1 5 TRP 1 11 -1 O MET 1 8 N GLN 0 67 SHEET 1 AA2 4 ILE 1 51 LEU 1 59 0 SHEET 2 AA2 4 ALA 1 62 TYR 1 69 -1 O THR 1 68 N SER 1 52 SHEET 3 AA2 4 GLY 1 84 LYS 1 91 -1 O ARG 1 90 N LYS 1 63 SHEET 4 AA2 4 TYR 1 94 GLN 1 97 -1 O TYR 1 94 N LYS 1 91 SHEET 1 AA3 5 THR A 43 GLU A 48 0 SHEET 2 AA3 5 LEU A 29 PRO A 36 -1 N LEU A 30 O PHE A 47 SHEET 3 AA3 5 TYR A 74 LEU A 80 -1 O GLN A 75 N THR A 35 SHEET 4 AA3 5 LEU A 102 ALA A 108 1 O ASN A 103 N TYR A 74 SHEET 5 AA3 5 VAL A 133 VAL A 135 1 O GLU A 134 N ALA A 108 SHEET 1 AA4 3 THR y 12 ALA y 18 0 SHEET 2 AA4 3 VAL y 3 ARG y 9 -1 N VAL y 3 O ALA y 18 SHEET 3 AA4 3 ALA y 73 THR y 74 1 O ALA y 73 N MET y 6 SHEET 1 AA5 3 GLU z 28 VAL z 31 0 SHEET 2 AA5 3 VAL z 19 ILE z 22 -1 N LEU z 21 O PHE z 29 SHEET 3 AA5 3 VAL z 60 ASN z 61 1 O VAL z 60 N ILE z 22 SSBOND 1 CYS A 53 CYS A 58 1555 1555 2.03 LINK NE2 HIS 1 108 ZN ZN 1 201 1555 1555 2.04 LINK SG CYS 1 114 ZN ZN 1 201 1555 1555 2.31 LINK SG CYS 1 133 ZN ZN 1 201 1555 1555 2.30 LINK NE2 HIS 1 139 ZN ZN 1 201 1555 1555 2.04 LINK ND1 HIS A 54 ZN ZN A 401 1555 1555 2.07 LINK SG CYS A 85 ZN ZN A 401 1555 1555 2.30 LINK SG CYS A 88 ZN ZN A 401 1555 1555 2.30 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000