HEADER TRANSFERASE/DNA 02-FEB-23 8G1J TITLE STRUCTURE OF TERNARY COMPLEX OF CGAS WITH DSDNA AND BOUND ATP AND ITP COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLIC GMP-AMP SYNTHASE; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 147-507; COMPND 5 SYNONYM: CGAMP SYNTHASE,CGAS,M-CGAS,2'3'-CGAMP SYNTHASE,MAB-21 COMPND 6 DOMAIN-CONTAINING PROTEIN 1; COMPND 7 EC: 2.7.7.86; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: PALINDROMIC DNA18; COMPND 12 CHAIN: E, F, I, J; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: CGAS, MB21D1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PET28; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: NHMT MCAT QN; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630 KEYWDS TRANSFERASE-DNA COMPLEX, CGAS, ATP AND ITP, IMMUNE SYSTEM, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.WU,J.SOHN REVDAT 2 29-MAY-24 8G1J 1 JRNL REVDAT 1 22-MAY-24 8G1J 0 JRNL AUTH S.WU,S.B.GABELLI,J.SOHN JRNL TITL THE STRUCTURAL BASIS FOR 2'-5'/3'-5'-CGAMP SYNTHESIS BY JRNL TITL 2 CGAS. JRNL REF NAT COMMUN V. 15 4012 2024 JRNL REFN ESSN 2041-1723 JRNL PMID 38740774 JRNL DOI 10.1038/S41467-024-48365-3 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1-4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.60 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.980 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 49464 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.040 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.6000 - 5.5300 1.00 3597 152 0.1673 0.1886 REMARK 3 2 5.5300 - 4.3900 1.00 3468 146 0.1657 0.2130 REMARK 3 3 4.3900 - 3.8400 1.00 3421 144 0.1712 0.1955 REMARK 3 4 3.8400 - 3.4900 1.00 3414 143 0.1988 0.2227 REMARK 3 5 3.4900 - 3.2400 1.00 3370 143 0.2080 0.2476 REMARK 3 6 3.2400 - 3.0500 1.00 3406 144 0.2427 0.2970 REMARK 3 7 3.0500 - 2.8900 1.00 3351 141 0.2539 0.2641 REMARK 3 8 2.8900 - 2.7700 1.00 3385 142 0.2454 0.2970 REMARK 3 9 2.7700 - 2.6600 1.00 3350 141 0.2446 0.2835 REMARK 3 10 2.6600 - 2.5700 1.00 3368 142 0.2552 0.2829 REMARK 3 11 2.5700 - 2.4900 1.00 3345 141 0.2422 0.2781 REMARK 3 12 2.4900 - 2.4200 1.00 3366 142 0.2528 0.2632 REMARK 3 13 2.4200 - 2.3600 1.00 3327 140 0.2543 0.2889 REMARK 3 14 2.3600 - 2.3000 0.98 3296 139 0.2617 0.2973 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.390 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 7658 REMARK 3 ANGLE : 1.082 10632 REMARK 3 CHIRALITY : 0.053 1153 REMARK 3 PLANARITY : 0.011 1074 REMARK 3 DIHEDRAL : 25.577 1488 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND ( RESID 148:507 OR RESID 604:604 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.380 27.130 19.841 REMARK 3 T TENSOR REMARK 3 T11: 0.2930 T22: 0.3288 REMARK 3 T33: 0.3469 T12: 0.0174 REMARK 3 T13: -0.0098 T23: -0.0399 REMARK 3 L TENSOR REMARK 3 L11: 1.7437 L22: 2.7641 REMARK 3 L33: 1.2564 L12: -0.6506 REMARK 3 L13: -0.3607 L23: -0.2154 REMARK 3 S TENSOR REMARK 3 S11: -0.0029 S12: -0.0434 S13: 0.0501 REMARK 3 S21: 0.1156 S22: 0.0030 S23: 0.2899 REMARK 3 S31: -0.1489 S32: -0.1531 S33: 0.0069 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN C AND ( RESID 148:507 OR RESID 604:604 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.661 -7.849 19.024 REMARK 3 T TENSOR REMARK 3 T11: 0.3408 T22: 0.3595 REMARK 3 T33: 0.3486 T12: 0.0503 REMARK 3 T13: 0.0382 T23: 0.0475 REMARK 3 L TENSOR REMARK 3 L11: 2.3094 L22: 3.1165 REMARK 3 L33: 1.5339 L12: -1.2958 REMARK 3 L13: 0.1628 L23: -0.2754 REMARK 3 S TENSOR REMARK 3 S11: -0.1774 S12: -0.2777 S13: -0.1702 REMARK 3 S21: 0.1940 S22: 0.1330 S23: -0.2236 REMARK 3 S31: 0.1848 S32: 0.1336 S33: 0.0395 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN E AND RESID 1:18 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.952 23.358 31.552 REMARK 3 T TENSOR REMARK 3 T11: 0.6610 T22: 0.6928 REMARK 3 T33: 0.5361 T12: -0.1641 REMARK 3 T13: 0.0412 T23: -0.0148 REMARK 3 L TENSOR REMARK 3 L11: 2.6563 L22: 1.4955 REMARK 3 L33: 2.9130 L12: -0.4467 REMARK 3 L13: 0.6849 L23: 0.8408 REMARK 3 S TENSOR REMARK 3 S11: 0.2492 S12: -0.8264 S13: -0.0602 REMARK 3 S21: 0.7353 S22: 0.0400 S23: -0.0104 REMARK 3 S31: -0.1863 S32: 0.2705 S33: -0.3092 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN F AND RESID 1:18 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.631 23.936 32.419 REMARK 3 T TENSOR REMARK 3 T11: 0.7193 T22: 0.7399 REMARK 3 T33: 0.5310 T12: -0.0628 REMARK 3 T13: -0.0103 T23: 0.0175 REMARK 3 L TENSOR REMARK 3 L11: 1.6681 L22: 2.2726 REMARK 3 L33: 1.8674 L12: -0.3958 REMARK 3 L13: 0.8027 L23: 0.1537 REMARK 3 S TENSOR REMARK 3 S11: 0.1924 S12: -0.7097 S13: -0.1337 REMARK 3 S21: 0.5922 S22: -0.2001 S23: 0.0235 REMARK 3 S31: 0.4546 S32: 0.5273 S33: -0.0618 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN I AND RESID 1:18 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.300 -8.687 18.067 REMARK 3 T TENSOR REMARK 3 T11: 0.5357 T22: 0.5583 REMARK 3 T33: 0.6711 T12: -0.1464 REMARK 3 T13: 0.0163 T23: 0.0199 REMARK 3 L TENSOR REMARK 3 L11: 2.7628 L22: 2.4145 REMARK 3 L33: 1.5961 L12: -0.8591 REMARK 3 L13: -0.9731 L23: -0.6403 REMARK 3 S TENSOR REMARK 3 S11: 0.1072 S12: 0.0268 S13: -0.6309 REMARK 3 S21: -0.0138 S22: 0.1887 S23: 0.1598 REMARK 3 S31: 0.4662 S32: -0.6843 S33: -0.2933 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN J AND RESID 1:18 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.770 -6.687 18.840 REMARK 3 T TENSOR REMARK 3 T11: 0.6768 T22: 0.6655 REMARK 3 T33: 0.5959 T12: -0.0257 REMARK 3 T13: 0.1271 T23: 0.0868 REMARK 3 L TENSOR REMARK 3 L11: 3.1960 L22: 2.9966 REMARK 3 L33: 1.3651 L12: -0.1819 REMARK 3 L13: 0.3081 L23: 0.0278 REMARK 3 S TENSOR REMARK 3 S11: 0.1323 S12: 0.4403 S13: -0.3273 REMARK 3 S21: -0.1444 S22: 0.1097 S23: 0.4703 REMARK 3 S31: -0.1659 S32: -0.5313 S33: -0.1468 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8G1J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-FEB-23. REMARK 100 THE DEPOSITION ID IS D_1000272045. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-SEP-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0-7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : HORIZONTAL BOUNCE SI(111) DOUBLE REMARK 200 CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 20210205 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.7 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49568 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 29.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.37 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.75300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 11.7.03 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM ACETATE, 32% MPD, WITH REMARK 280 0.1 M BIS-TRIS PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.04350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.05000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.24200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.05000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.04350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.24200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -64.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, E, F, I, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 144 REMARK 465 THR A 145 REMARK 465 GLY A 146 REMARK 465 PRO A 147 REMARK 465 LYS A 240 REMARK 465 ARG A 241 REMARK 465 ILE A 242 REMARK 465 PRO A 243 REMARK 465 ARG A 244 REMARK 465 ASN A 351 REMARK 465 ALA A 352 REMARK 465 LYS A 353 REMARK 465 ASP A 354 REMARK 465 GLY A 355 REMARK 465 ASN A 356 REMARK 465 SER A 357 REMARK 465 PHE A 358 REMARK 465 GLY C 144 REMARK 465 THR C 145 REMARK 465 GLY C 146 REMARK 465 PRO C 147 REMARK 465 LYS C 240 REMARK 465 ARG C 241 REMARK 465 ILE C 242 REMARK 465 PRO C 243 REMARK 465 ARG C 244 REMARK 465 GLY C 245 REMARK 465 LYS C 353 REMARK 465 ASP C 354 REMARK 465 GLY C 355 REMARK 465 ASN C 356 REMARK 465 SER C 357 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 309 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC F 8 O3' DC F 8 C3' -0.071 REMARK 500 DG F 11 O3' DG F 11 C3' -0.056 REMARK 500 DT I 10 O3' DT I 10 C3' -0.043 REMARK 500 DG I 11 O3' DG I 11 C3' -0.039 REMARK 500 DC J 14 O3' DC J 14 C3' -0.049 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 301 C - N - CD ANGL. DEV. = -15.7 DEGREES REMARK 500 DT E 12 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DA E 15 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 185 -138.18 31.69 REMARK 500 GLU A 186 49.37 -89.13 REMARK 500 SER A 207 -58.79 74.17 REMARK 500 ARG A 222 71.90 60.11 REMARK 500 GLU A 230 19.06 54.50 REMARK 500 GLU A 255 -33.95 69.66 REMARK 500 ASN A 300 51.25 -109.36 REMARK 500 PRO A 301 -65.46 19.72 REMARK 500 TRP A 331 -69.76 -132.11 REMARK 500 LYS C 149 -103.82 45.52 REMARK 500 LYS C 184 96.38 -66.71 REMARK 500 ARG C 185 174.22 148.17 REMARK 500 GLU C 186 -72.42 -60.78 REMARK 500 SER C 187 127.51 61.96 REMARK 500 SER C 207 -60.44 75.51 REMARK 500 TYR C 228 -90.67 -62.79 REMARK 500 GLU C 253 -105.53 -138.23 REMARK 500 ARG C 299 -162.75 -109.48 REMARK 500 ASN C 300 -70.55 109.11 REMARK 500 GLU C 302 169.17 156.62 REMARK 500 TRP C 331 -71.01 -126.49 REMARK 500 ASN C 351 115.58 91.69 REMARK 500 ASN C 377 59.77 -142.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 300 PRO A 301 -103.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 GTP A 602 REMARK 610 GTP C 602 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 603 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 211 OE1 REMARK 620 2 ASN A 213 OD1 90.5 REMARK 620 3 ATP A 601 O3G 93.2 175.1 REMARK 620 4 ATP A 601 O2B 170.2 80.6 95.6 REMARK 620 5 ATP A 601 O2A 96.5 87.2 95.6 87.0 REMARK 620 6 HOH A 724 O 80.8 81.1 96.3 93.8 168.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 604 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 378 NE2 REMARK 620 2 CYS A 384 SG 110.3 REMARK 620 3 CYS A 385 SG 106.1 127.5 REMARK 620 4 CYS A 392 SG 100.1 101.4 108.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 603 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN C 211 OE1 REMARK 620 2 ASN C 213 OD1 84.6 REMARK 620 3 ATP C 601 O3G 95.4 166.6 REMARK 620 4 ATP C 601 O2B 168.7 85.4 93.0 REMARK 620 5 ATP C 601 O2A 95.4 90.1 103.2 90.0 REMARK 620 6 HOH C 705 O 85.6 76.9 89.7 86.8 166.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 604 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 378 NE2 REMARK 620 2 CYS C 384 SG 113.7 REMARK 620 3 CYS C 385 SG 103.8 129.0 REMARK 620 4 CYS C 392 SG 100.5 101.2 104.7 REMARK 620 N 1 2 3 DBREF 8G1J A 147 507 UNP Q8C6L5 CGAS_MOUSE 147 507 DBREF 8G1J C 147 507 UNP Q8C6L5 CGAS_MOUSE 147 507 DBREF 8G1J E 1 18 PDB 8G1J 8G1J 1 18 DBREF 8G1J F 1 18 PDB 8G1J 8G1J 1 18 DBREF 8G1J I 1 18 PDB 8G1J 8G1J 1 18 DBREF 8G1J J 1 18 PDB 8G1J 8G1J 1 18 SEQADV 8G1J GLY A 144 UNP Q8C6L5 EXPRESSION TAG SEQADV 8G1J THR A 145 UNP Q8C6L5 EXPRESSION TAG SEQADV 8G1J GLY A 146 UNP Q8C6L5 EXPRESSION TAG SEQADV 8G1J GLN A 211 UNP Q8C6L5 GLU 211 ENGINEERED MUTATION SEQADV 8G1J ASN A 213 UNP Q8C6L5 ASP 213 ENGINEERED MUTATION SEQADV 8G1J GLY C 144 UNP Q8C6L5 EXPRESSION TAG SEQADV 8G1J THR C 145 UNP Q8C6L5 EXPRESSION TAG SEQADV 8G1J GLY C 146 UNP Q8C6L5 EXPRESSION TAG SEQADV 8G1J GLN C 211 UNP Q8C6L5 GLU 211 ENGINEERED MUTATION SEQADV 8G1J ASN C 213 UNP Q8C6L5 ASP 213 ENGINEERED MUTATION SEQRES 1 A 364 GLY THR GLY PRO ASP LYS LEU LYS LYS VAL LEU ASP LYS SEQRES 2 A 364 LEU ARG LEU LYS ARG LYS ASP ILE SER GLU ALA ALA GLU SEQRES 3 A 364 THR VAL ASN LYS VAL VAL GLU ARG LEU LEU ARG ARG MET SEQRES 4 A 364 GLN LYS ARG GLU SER GLU PHE LYS GLY VAL GLU GLN LEU SEQRES 5 A 364 ASN THR GLY SER TYR TYR GLU HIS VAL LYS ILE SER ALA SEQRES 6 A 364 PRO ASN GLN PHE ASN VAL MET PHE LYS LEU GLU VAL PRO SEQRES 7 A 364 ARG ILE GLU LEU GLN GLU TYR TYR GLU THR GLY ALA PHE SEQRES 8 A 364 TYR LEU VAL LYS PHE LYS ARG ILE PRO ARG GLY ASN PRO SEQRES 9 A 364 LEU SER HIS PHE LEU GLU GLY GLU VAL LEU SER ALA THR SEQRES 10 A 364 LYS MET LEU SER LYS PHE ARG LYS ILE ILE LYS GLU GLU SEQRES 11 A 364 VAL LYS GLU ILE LYS ASP ILE ASP VAL SER VAL GLU LYS SEQRES 12 A 364 GLU LYS PRO GLY SER PRO ALA VAL THR LEU LEU ILE ARG SEQRES 13 A 364 ASN PRO GLU GLU ILE SER VAL ASP ILE ILE LEU ALA LEU SEQRES 14 A 364 GLU SER LYS GLY SER TRP PRO ILE SER THR LYS GLU GLY SEQRES 15 A 364 LEU PRO ILE GLN GLY TRP LEU GLY THR LYS VAL ARG THR SEQRES 16 A 364 ASN LEU ARG ARG GLU PRO PHE TYR LEU VAL PRO LYS ASN SEQRES 17 A 364 ALA LYS ASP GLY ASN SER PHE GLN GLY GLU THR TRP ARG SEQRES 18 A 364 LEU SER PHE SER HIS THR GLU LYS TYR ILE LEU ASN ASN SEQRES 19 A 364 HIS GLY ILE GLU LYS THR CYS CYS GLU SER SER GLY ALA SEQRES 20 A 364 LYS CYS CYS ARG LYS GLU CYS LEU LYS LEU MET LYS TYR SEQRES 21 A 364 LEU LEU GLU GLN LEU LYS LYS GLU PHE GLN GLU LEU ASP SEQRES 22 A 364 ALA PHE CYS SER TYR HIS VAL LYS THR ALA ILE PHE HIS SEQRES 23 A 364 MET TRP THR GLN ASP PRO GLN ASP SER GLN TRP ASP PRO SEQRES 24 A 364 ARG ASN LEU SER SER CYS PHE ASP LYS LEU LEU ALA PHE SEQRES 25 A 364 PHE LEU GLU CYS LEU ARG THR GLU LYS LEU ASP HIS TYR SEQRES 26 A 364 PHE ILE PRO LYS PHE ASN LEU PHE SER GLN GLU LEU ILE SEQRES 27 A 364 ASP ARG LYS SER LYS GLU PHE LEU SER LYS LYS ILE GLU SEQRES 28 A 364 TYR GLU ARG ASN ASN GLY PHE PRO ILE PHE ASP LYS LEU SEQRES 1 C 364 GLY THR GLY PRO ASP LYS LEU LYS LYS VAL LEU ASP LYS SEQRES 2 C 364 LEU ARG LEU LYS ARG LYS ASP ILE SER GLU ALA ALA GLU SEQRES 3 C 364 THR VAL ASN LYS VAL VAL GLU ARG LEU LEU ARG ARG MET SEQRES 4 C 364 GLN LYS ARG GLU SER GLU PHE LYS GLY VAL GLU GLN LEU SEQRES 5 C 364 ASN THR GLY SER TYR TYR GLU HIS VAL LYS ILE SER ALA SEQRES 6 C 364 PRO ASN GLN PHE ASN VAL MET PHE LYS LEU GLU VAL PRO SEQRES 7 C 364 ARG ILE GLU LEU GLN GLU TYR TYR GLU THR GLY ALA PHE SEQRES 8 C 364 TYR LEU VAL LYS PHE LYS ARG ILE PRO ARG GLY ASN PRO SEQRES 9 C 364 LEU SER HIS PHE LEU GLU GLY GLU VAL LEU SER ALA THR SEQRES 10 C 364 LYS MET LEU SER LYS PHE ARG LYS ILE ILE LYS GLU GLU SEQRES 11 C 364 VAL LYS GLU ILE LYS ASP ILE ASP VAL SER VAL GLU LYS SEQRES 12 C 364 GLU LYS PRO GLY SER PRO ALA VAL THR LEU LEU ILE ARG SEQRES 13 C 364 ASN PRO GLU GLU ILE SER VAL ASP ILE ILE LEU ALA LEU SEQRES 14 C 364 GLU SER LYS GLY SER TRP PRO ILE SER THR LYS GLU GLY SEQRES 15 C 364 LEU PRO ILE GLN GLY TRP LEU GLY THR LYS VAL ARG THR SEQRES 16 C 364 ASN LEU ARG ARG GLU PRO PHE TYR LEU VAL PRO LYS ASN SEQRES 17 C 364 ALA LYS ASP GLY ASN SER PHE GLN GLY GLU THR TRP ARG SEQRES 18 C 364 LEU SER PHE SER HIS THR GLU LYS TYR ILE LEU ASN ASN SEQRES 19 C 364 HIS GLY ILE GLU LYS THR CYS CYS GLU SER SER GLY ALA SEQRES 20 C 364 LYS CYS CYS ARG LYS GLU CYS LEU LYS LEU MET LYS TYR SEQRES 21 C 364 LEU LEU GLU GLN LEU LYS LYS GLU PHE GLN GLU LEU ASP SEQRES 22 C 364 ALA PHE CYS SER TYR HIS VAL LYS THR ALA ILE PHE HIS SEQRES 23 C 364 MET TRP THR GLN ASP PRO GLN ASP SER GLN TRP ASP PRO SEQRES 24 C 364 ARG ASN LEU SER SER CYS PHE ASP LYS LEU LEU ALA PHE SEQRES 25 C 364 PHE LEU GLU CYS LEU ARG THR GLU LYS LEU ASP HIS TYR SEQRES 26 C 364 PHE ILE PRO LYS PHE ASN LEU PHE SER GLN GLU LEU ILE SEQRES 27 C 364 ASP ARG LYS SER LYS GLU PHE LEU SER LYS LYS ILE GLU SEQRES 28 C 364 TYR GLU ARG ASN ASN GLY PHE PRO ILE PHE ASP LYS LEU SEQRES 1 E 18 DA DT DC DT DG DT DA DC DA DT DG DT DA SEQRES 2 E 18 DC DA DG DA DT SEQRES 1 F 18 DA DT DC DT DG DT DA DC DA DT DG DT DA SEQRES 2 F 18 DC DA DG DA DT SEQRES 1 I 18 DA DT DC DT DG DT DA DC DA DT DG DT DA SEQRES 2 I 18 DC DA DG DA DT SEQRES 1 J 18 DA DT DC DT DG DT DA DC DA DT DG DT DA SEQRES 2 J 18 DC DA DG DA DT HET ATP A 601 31 HET GTP A 602 31 HET MG A 603 1 HET ZN A 604 1 HET ATP C 601 31 HET GTP C 602 31 HET MG C 603 1 HET ZN C 604 1 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM ZN ZINC ION FORMUL 7 ATP 2(C10 H16 N5 O13 P3) FORMUL 8 GTP 2(C10 H16 N5 O14 P3) FORMUL 9 MG 2(MG 2+) FORMUL 10 ZN 2(ZN 2+) FORMUL 15 HOH *104(H2 O) HELIX 1 AA1 ASP A 148 ARG A 158 1 11 HELIX 2 AA2 LYS A 160 GLN A 183 1 24 HELIX 3 AA3 LEU A 248 HIS A 250 5 3 HELIX 4 AA4 SER A 258 GLU A 276 1 19 HELIX 5 AA5 PRO A 319 LYS A 323 5 5 HELIX 6 AA6 GLY A 333 ARG A 342 1 10 HELIX 7 AA7 PHE A 367 ASN A 377 1 11 HELIX 8 AA8 CYS A 393 PHE A 412 1 20 HELIX 9 AA9 GLN A 413 ASP A 416 5 4 HELIX 10 AB1 CYS A 419 ASP A 434 1 16 HELIX 11 AB2 GLN A 436 ARG A 443 5 8 HELIX 12 AB3 ASN A 444 GLU A 463 1 20 HELIX 13 AB4 ASP A 482 ASN A 498 1 17 HELIX 14 AB5 ASN A 499 GLY A 500 5 2 HELIX 15 AB6 PHE A 501 LYS A 506 5 6 HELIX 16 AB7 LYS C 149 ARG C 158 1 10 HELIX 17 AB8 LYS C 160 LYS C 184 1 25 HELIX 18 AB9 ASN C 246 LEU C 252 5 7 HELIX 19 AC1 SER C 258 ILE C 277 1 20 HELIX 20 AC2 PRO C 319 LYS C 323 5 5 HELIX 21 AC3 GLY C 333 ARG C 342 1 10 HELIX 22 AC4 PHE C 358 THR C 362 5 5 HELIX 23 AC5 PHE C 367 ASN C 377 1 11 HELIX 24 AC6 CYS C 393 PHE C 412 1 20 HELIX 25 AC7 GLN C 413 ASP C 416 5 4 HELIX 26 AC8 CYS C 419 ASP C 434 1 16 HELIX 27 AC9 GLN C 436 ARG C 443 5 8 HELIX 28 AD1 ASN C 444 GLU C 463 1 20 HELIX 29 AD2 ASP C 482 ASN C 498 1 17 HELIX 30 AD3 ASN C 499 GLY C 500 5 2 HELIX 31 AD4 PHE C 501 ASP C 505 5 5 SHEET 1 AA1 7 GLU A 193 THR A 197 0 SHEET 2 AA1 7 GLN A 211 GLU A 219 -1 O MET A 215 N LEU A 195 SHEET 3 AA1 7 GLU A 303 SER A 314 1 O ALA A 311 N LEU A 218 SHEET 4 AA1 7 PHE A 345 PRO A 349 -1 O LEU A 347 N LEU A 312 SHEET 5 AA1 7 TRP A 363 SER A 366 -1 O ARG A 364 N VAL A 348 SHEET 6 AA1 7 PHE A 234 LYS A 238 -1 N TYR A 235 O TRP A 363 SHEET 7 AA1 7 GLU A 224 GLU A 227 -1 N GLN A 226 O LEU A 236 SHEET 1 AA2 5 GLU A 193 THR A 197 0 SHEET 2 AA2 5 GLN A 211 GLU A 219 -1 O MET A 215 N LEU A 195 SHEET 3 AA2 5 GLU A 303 SER A 314 1 O ALA A 311 N LEU A 218 SHEET 4 AA2 5 ALA A 293 ARG A 299 -1 N ILE A 298 O ILE A 304 SHEET 5 AA2 5 ASP A 281 VAL A 284 -1 N SER A 283 O LEU A 297 SHEET 1 AA3 2 LEU A 252 GLU A 253 0 SHEET 2 AA3 2 VAL A 256 LEU A 257 -1 O VAL A 256 N GLU A 253 SHEET 1 AA4 7 GLU C 193 THR C 197 0 SHEET 2 AA4 7 GLN C 211 GLU C 219 -1 O MET C 215 N LEU C 195 SHEET 3 AA4 7 ILE C 304 SER C 314 1 O ILE C 309 N VAL C 214 SHEET 4 AA4 7 PHE C 345 VAL C 348 -1 O LEU C 347 N LEU C 312 SHEET 5 AA4 7 TRP C 363 SER C 366 -1 O ARG C 364 N VAL C 348 SHEET 6 AA4 7 PHE C 234 LYS C 238 -1 N TYR C 235 O TRP C 363 SHEET 7 AA4 7 GLU C 224 GLU C 227 -1 N GLN C 226 O LEU C 236 SHEET 1 AA5 5 GLU C 193 THR C 197 0 SHEET 2 AA5 5 GLN C 211 GLU C 219 -1 O MET C 215 N LEU C 195 SHEET 3 AA5 5 ILE C 304 SER C 314 1 O ILE C 309 N VAL C 214 SHEET 4 AA5 5 ALA C 293 ILE C 298 -1 N ILE C 298 O ILE C 304 SHEET 5 AA5 5 VAL C 282 VAL C 284 -1 N SER C 283 O LEU C 297 LINK OE1 GLN A 211 MG MG A 603 1555 1555 2.10 LINK OD1 ASN A 213 MG MG A 603 1555 1555 2.16 LINK NE2 HIS A 378 ZN ZN A 604 1555 1555 2.05 LINK SG CYS A 384 ZN ZN A 604 1555 1555 2.33 LINK SG CYS A 385 ZN ZN A 604 1555 1555 2.31 LINK SG CYS A 392 ZN ZN A 604 1555 1555 2.34 LINK O3G ATP A 601 MG MG A 603 1555 1555 1.96 LINK O2B ATP A 601 MG MG A 603 1555 1555 2.14 LINK O2A ATP A 601 MG MG A 603 1555 1555 2.10 LINK MG MG A 603 O HOH A 724 1555 1555 2.24 LINK OE1 GLN C 211 MG MG C 603 1555 1555 2.18 LINK OD1 ASN C 213 MG MG C 603 1555 1555 2.21 LINK NE2 HIS C 378 ZN ZN C 604 1555 1555 2.11 LINK SG CYS C 384 ZN ZN C 604 1555 1555 2.31 LINK SG CYS C 385 ZN ZN C 604 1555 1555 2.30 LINK SG CYS C 392 ZN ZN C 604 1555 1555 2.32 LINK O3G ATP C 601 MG MG C 603 1555 1555 2.05 LINK O2B ATP C 601 MG MG C 603 1555 1555 2.04 LINK O2A ATP C 601 MG MG C 603 1555 1555 2.01 LINK MG MG C 603 O HOH C 705 1555 1555 2.32 CRYST1 78.087 98.484 142.100 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012806 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010154 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007037 0.00000