data_8G2V # _entry.id 8G2V # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8G2V pdb_00008g2v 10.2210/pdb8g2v/pdb WWPDB D_1000272110 ? ? EMDB EMD-29682 ? ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Cryo-EM structure of recombinant human LECT2 amyloid fibril core' _pdbx_database_related.db_id EMD-29682 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8G2V _pdbx_database_status.recvd_initial_deposition_date 2023-02-06 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Richards, L.S.' 1 0000-0002-1694-1652 'Flores, M.D.' 2 0000-0002-4483-087X 'Zink, S.' 3 0000-0002-3220-8290 'Schibrowsky, N.A.' 4 0000-0002-8952-9570 'Sawaya, M.R.' 5 0000-0003-0874-9043 'Rodriguez, J.A.' 6 0000-0002-0248-4964 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Structure _citation.journal_id_ASTM STRUE6 _citation.journal_id_CSD 2005 _citation.journal_id_ISSN 0969-2126 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 31 _citation.language ? _citation.page_first 1386 _citation.page_last 1393.e3 _citation.title 'Cryo-EM structure of a human LECT2 amyloid fibril reveals a network of polar ladders at its core.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.str.2023.08.007 _citation.pdbx_database_id_PubMed 37657439 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Richards, L.S.' 1 ? primary 'Flores, M.D.' 2 ? primary 'Zink, S.' 3 ? primary 'Schibrowsky, N.A.' 4 ? primary 'Sawaya, M.R.' 5 ? primary 'Rodriguez, J.A.' 6 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8G2V _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8G2V _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Leukocyte cell-derived chemotaxin-2' _entity.formula_weight 2389.752 _entity.pdbx_number_of_molecules 10 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name LECT-2,hLECT2 # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code MIVGQEKPYQNKNAINNGVRI _entity_poly.pdbx_seq_one_letter_code_can MIVGQEKPYQNKNAINNGVRI _entity_poly.pdbx_strand_id A,B,C,D,E,F,G,H,I,J _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ILE n 1 3 VAL n 1 4 GLY n 1 5 GLN n 1 6 GLU n 1 7 LYS n 1 8 PRO n 1 9 TYR n 1 10 GLN n 1 11 ASN n 1 12 LYS n 1 13 ASN n 1 14 ALA n 1 15 ILE n 1 16 ASN n 1 17 ASN n 1 18 GLY n 1 19 VAL n 1 20 ARG n 1 21 ILE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 21 _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene LECT2 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code LECT2_HUMAN _struct_ref.pdbx_db_accession O14960 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code MIVGQEKPYQNKNAINNGVRI _struct_ref.pdbx_align_begin 73 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8G2V A 1 ? 21 ? O14960 73 ? 93 ? 55 75 2 1 8G2V B 1 ? 21 ? O14960 73 ? 93 ? 55 75 3 1 8G2V C 1 ? 21 ? O14960 73 ? 93 ? 55 75 4 1 8G2V D 1 ? 21 ? O14960 73 ? 93 ? 55 75 5 1 8G2V E 1 ? 21 ? O14960 73 ? 93 ? 55 75 6 1 8G2V F 1 ? 21 ? O14960 73 ? 93 ? 55 75 7 1 8G2V G 1 ? 21 ? O14960 73 ? 93 ? 55 75 8 1 8G2V H 1 ? 21 ? O14960 73 ? 93 ? 55 75 9 1 8G2V I 1 ? 21 ? O14960 73 ? 93 ? 55 75 10 1 8G2V J 1 ? 21 ? O14960 73 ? 93 ? 55 75 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8G2V _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 8G2V _struct.title 'Cryo-EM structure of recombinant human LECT2 amyloid fibril core' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8G2V _struct_keywords.text 'amyloid, LECT2, human, recombinant, fibril, protein, ALECT2, cryo-EM, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 1 ? H N N 1 ? I N N 1 ? J N N 1 ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 5 ? AA3 ? 5 ? AA4 ? 5 ? AA5 ? 5 ? AA6 ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA1 4 5 ? parallel AA2 1 2 ? parallel AA2 2 3 ? parallel AA2 3 4 ? parallel AA2 4 5 ? parallel AA3 1 2 ? parallel AA3 2 3 ? parallel AA3 3 4 ? parallel AA3 4 5 ? parallel AA4 1 2 ? parallel AA4 2 3 ? parallel AA4 3 4 ? parallel AA4 4 5 ? parallel AA5 1 2 ? parallel AA5 2 3 ? parallel AA5 3 4 ? parallel AA5 4 5 ? parallel AA6 1 2 ? parallel AA6 2 3 ? parallel AA6 3 4 ? parallel AA6 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL H 3 ? GLU H 6 ? VAL H 57 GLU H 60 AA1 2 VAL D 3 ? GLU D 6 ? VAL D 57 GLU D 60 AA1 3 VAL A 3 ? GLU A 6 ? VAL A 57 GLU A 60 AA1 4 VAL E 3 ? GLU E 6 ? VAL E 57 GLU E 60 AA1 5 VAL I 3 ? GLU I 6 ? VAL I 57 GLU I 60 AA2 1 ASN H 13 ? ASN H 16 ? ASN H 67 ASN H 70 AA2 2 ASN D 13 ? ASN D 16 ? ASN D 67 ASN D 70 AA2 3 ASN A 13 ? ASN A 16 ? ASN A 67 ASN A 70 AA2 4 ASN E 13 ? ASN E 16 ? ASN E 67 ASN E 70 AA2 5 ASN I 13 ? ALA I 14 ? ASN I 67 ALA I 68 AA3 1 VAL H 19 ? ARG H 20 ? VAL H 73 ARG H 74 AA3 2 VAL D 19 ? ARG D 20 ? VAL D 73 ARG D 74 AA3 3 VAL A 19 ? ARG A 20 ? VAL A 73 ARG A 74 AA3 4 VAL E 19 ? ARG E 20 ? VAL E 73 ARG E 74 AA3 5 VAL I 19 ? ARG I 20 ? VAL I 73 ARG I 74 AA4 1 VAL F 3 ? GLU F 6 ? VAL F 57 GLU F 60 AA4 2 VAL B 3 ? GLU B 6 ? VAL B 57 GLU B 60 AA4 3 VAL C 3 ? GLU C 6 ? VAL C 57 GLU C 60 AA4 4 VAL G 3 ? GLU G 6 ? VAL G 57 GLU G 60 AA4 5 VAL J 3 ? GLU J 6 ? VAL J 57 GLU J 60 AA5 1 ASN F 13 ? ASN F 16 ? ASN F 67 ASN F 70 AA5 2 ASN B 13 ? ASN B 16 ? ASN B 67 ASN B 70 AA5 3 ASN C 13 ? ASN C 16 ? ASN C 67 ASN C 70 AA5 4 ASN G 13 ? ASN G 16 ? ASN G 67 ASN G 70 AA5 5 ASN J 13 ? ALA J 14 ? ASN J 67 ALA J 68 AA6 1 VAL F 19 ? ARG F 20 ? VAL F 73 ARG F 74 AA6 2 VAL B 19 ? ARG B 20 ? VAL B 73 ARG B 74 AA6 3 VAL C 19 ? ARG C 20 ? VAL C 73 ARG C 74 AA6 4 VAL G 19 ? ARG G 20 ? VAL G 73 ARG G 74 AA6 5 VAL J 19 ? ARG J 20 ? VAL J 73 ARG J 74 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O GLN H 5 ? O GLN H 59 N GLU D 6 ? N GLU D 60 AA1 2 3 O GLN D 5 ? O GLN D 59 N GLY A 4 ? N GLY A 58 AA1 3 4 N GLN A 5 ? N GLN A 59 O GLY E 4 ? O GLY E 58 AA1 4 5 N GLN E 5 ? N GLN E 59 O GLY I 4 ? O GLY I 58 AA2 1 2 O ASN H 13 ? O ASN H 67 N ALA D 14 ? N ALA D 68 AA2 2 3 O ASN D 13 ? O ASN D 67 N ALA A 14 ? N ALA A 68 AA2 3 4 N ASN A 13 ? N ASN A 67 O ALA E 14 ? O ALA E 68 AA2 4 5 N ASN E 13 ? N ASN E 67 O ALA I 14 ? O ALA I 68 AA3 1 2 O VAL H 19 ? O VAL H 73 N ARG D 20 ? N ARG D 74 AA3 2 3 O VAL D 19 ? O VAL D 73 N ARG A 20 ? N ARG A 74 AA3 3 4 N VAL A 19 ? N VAL A 73 O ARG E 20 ? O ARG E 74 AA3 4 5 N VAL E 19 ? N VAL E 73 O ARG I 20 ? O ARG I 74 AA4 1 2 O GLN F 5 ? O GLN F 59 N GLY B 4 ? N GLY B 58 AA4 2 3 N GLN B 5 ? N GLN B 59 O GLY C 4 ? O GLY C 58 AA4 3 4 N GLN C 5 ? N GLN C 59 O GLY G 4 ? O GLY G 58 AA4 4 5 N GLN G 5 ? N GLN G 59 O GLY J 4 ? O GLY J 58 AA5 1 2 O ASN F 13 ? O ASN F 67 N ALA B 14 ? N ALA B 68 AA5 2 3 N ASN B 13 ? N ASN B 67 O ALA C 14 ? O ALA C 68 AA5 3 4 N ASN C 13 ? N ASN C 67 O ALA G 14 ? O ALA G 68 AA5 4 5 N ASN G 13 ? N ASN G 67 O ALA J 14 ? O ALA J 68 AA6 1 2 O VAL F 19 ? O VAL F 73 N ARG B 20 ? N ARG B 74 AA6 2 3 N VAL B 19 ? N VAL B 73 O ARG C 20 ? O ARG C 74 AA6 3 4 N VAL C 19 ? N VAL C 73 O ARG G 20 ? O ARG G 74 AA6 4 5 N VAL G 19 ? N VAL G 73 O ARG J 20 ? O ARG J 74 # _atom_sites.entry_id 8G2V _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 55 55 MET MET A . n A 1 2 ILE 2 56 56 ILE ILE A . n A 1 3 VAL 3 57 57 VAL VAL A . n A 1 4 GLY 4 58 58 GLY GLY A . n A 1 5 GLN 5 59 59 GLN GLN A . n A 1 6 GLU 6 60 60 GLU GLU A . n A 1 7 LYS 7 61 61 LYS LYS A . n A 1 8 PRO 8 62 62 PRO PRO A . n A 1 9 TYR 9 63 63 TYR TYR A . n A 1 10 GLN 10 64 64 GLN GLN A . n A 1 11 ASN 11 65 65 ASN ASN A . n A 1 12 LYS 12 66 66 LYS LYS A . n A 1 13 ASN 13 67 67 ASN ASN A . n A 1 14 ALA 14 68 68 ALA ALA A . n A 1 15 ILE 15 69 69 ILE ILE A . n A 1 16 ASN 16 70 70 ASN ASN A . n A 1 17 ASN 17 71 71 ASN ASN A . n A 1 18 GLY 18 72 72 GLY GLY A . n A 1 19 VAL 19 73 73 VAL VAL A . n A 1 20 ARG 20 74 74 ARG ARG A . n A 1 21 ILE 21 75 75 ILE ILE A . n B 1 1 MET 1 55 55 MET MET B . n B 1 2 ILE 2 56 56 ILE ILE B . n B 1 3 VAL 3 57 57 VAL VAL B . n B 1 4 GLY 4 58 58 GLY GLY B . n B 1 5 GLN 5 59 59 GLN GLN B . n B 1 6 GLU 6 60 60 GLU GLU B . n B 1 7 LYS 7 61 61 LYS LYS B . n B 1 8 PRO 8 62 62 PRO PRO B . n B 1 9 TYR 9 63 63 TYR TYR B . n B 1 10 GLN 10 64 64 GLN GLN B . n B 1 11 ASN 11 65 65 ASN ASN B . n B 1 12 LYS 12 66 66 LYS LYS B . n B 1 13 ASN 13 67 67 ASN ASN B . n B 1 14 ALA 14 68 68 ALA ALA B . n B 1 15 ILE 15 69 69 ILE ILE B . n B 1 16 ASN 16 70 70 ASN ASN B . n B 1 17 ASN 17 71 71 ASN ASN B . n B 1 18 GLY 18 72 72 GLY GLY B . n B 1 19 VAL 19 73 73 VAL VAL B . n B 1 20 ARG 20 74 74 ARG ARG B . n B 1 21 ILE 21 75 75 ILE ILE B . n C 1 1 MET 1 55 55 MET MET C . n C 1 2 ILE 2 56 56 ILE ILE C . n C 1 3 VAL 3 57 57 VAL VAL C . n C 1 4 GLY 4 58 58 GLY GLY C . n C 1 5 GLN 5 59 59 GLN GLN C . n C 1 6 GLU 6 60 60 GLU GLU C . n C 1 7 LYS 7 61 61 LYS LYS C . n C 1 8 PRO 8 62 62 PRO PRO C . n C 1 9 TYR 9 63 63 TYR TYR C . n C 1 10 GLN 10 64 64 GLN GLN C . n C 1 11 ASN 11 65 65 ASN ASN C . n C 1 12 LYS 12 66 66 LYS LYS C . n C 1 13 ASN 13 67 67 ASN ASN C . n C 1 14 ALA 14 68 68 ALA ALA C . n C 1 15 ILE 15 69 69 ILE ILE C . n C 1 16 ASN 16 70 70 ASN ASN C . n C 1 17 ASN 17 71 71 ASN ASN C . n C 1 18 GLY 18 72 72 GLY GLY C . n C 1 19 VAL 19 73 73 VAL VAL C . n C 1 20 ARG 20 74 74 ARG ARG C . n C 1 21 ILE 21 75 75 ILE ILE C . n D 1 1 MET 1 55 55 MET MET D . n D 1 2 ILE 2 56 56 ILE ILE D . n D 1 3 VAL 3 57 57 VAL VAL D . n D 1 4 GLY 4 58 58 GLY GLY D . n D 1 5 GLN 5 59 59 GLN GLN D . n D 1 6 GLU 6 60 60 GLU GLU D . n D 1 7 LYS 7 61 61 LYS LYS D . n D 1 8 PRO 8 62 62 PRO PRO D . n D 1 9 TYR 9 63 63 TYR TYR D . n D 1 10 GLN 10 64 64 GLN GLN D . n D 1 11 ASN 11 65 65 ASN ASN D . n D 1 12 LYS 12 66 66 LYS LYS D . n D 1 13 ASN 13 67 67 ASN ASN D . n D 1 14 ALA 14 68 68 ALA ALA D . n D 1 15 ILE 15 69 69 ILE ILE D . n D 1 16 ASN 16 70 70 ASN ASN D . n D 1 17 ASN 17 71 71 ASN ASN D . n D 1 18 GLY 18 72 72 GLY GLY D . n D 1 19 VAL 19 73 73 VAL VAL D . n D 1 20 ARG 20 74 74 ARG ARG D . n D 1 21 ILE 21 75 75 ILE ILE D . n E 1 1 MET 1 55 55 MET MET E . n E 1 2 ILE 2 56 56 ILE ILE E . n E 1 3 VAL 3 57 57 VAL VAL E . n E 1 4 GLY 4 58 58 GLY GLY E . n E 1 5 GLN 5 59 59 GLN GLN E . n E 1 6 GLU 6 60 60 GLU GLU E . n E 1 7 LYS 7 61 61 LYS LYS E . n E 1 8 PRO 8 62 62 PRO PRO E . n E 1 9 TYR 9 63 63 TYR TYR E . n E 1 10 GLN 10 64 64 GLN GLN E . n E 1 11 ASN 11 65 65 ASN ASN E . n E 1 12 LYS 12 66 66 LYS LYS E . n E 1 13 ASN 13 67 67 ASN ASN E . n E 1 14 ALA 14 68 68 ALA ALA E . n E 1 15 ILE 15 69 69 ILE ILE E . n E 1 16 ASN 16 70 70 ASN ASN E . n E 1 17 ASN 17 71 71 ASN ASN E . n E 1 18 GLY 18 72 72 GLY GLY E . n E 1 19 VAL 19 73 73 VAL VAL E . n E 1 20 ARG 20 74 74 ARG ARG E . n E 1 21 ILE 21 75 75 ILE ILE E . n F 1 1 MET 1 55 55 MET MET F . n F 1 2 ILE 2 56 56 ILE ILE F . n F 1 3 VAL 3 57 57 VAL VAL F . n F 1 4 GLY 4 58 58 GLY GLY F . n F 1 5 GLN 5 59 59 GLN GLN F . n F 1 6 GLU 6 60 60 GLU GLU F . n F 1 7 LYS 7 61 61 LYS LYS F . n F 1 8 PRO 8 62 62 PRO PRO F . n F 1 9 TYR 9 63 63 TYR TYR F . n F 1 10 GLN 10 64 64 GLN GLN F . n F 1 11 ASN 11 65 65 ASN ASN F . n F 1 12 LYS 12 66 66 LYS LYS F . n F 1 13 ASN 13 67 67 ASN ASN F . n F 1 14 ALA 14 68 68 ALA ALA F . n F 1 15 ILE 15 69 69 ILE ILE F . n F 1 16 ASN 16 70 70 ASN ASN F . n F 1 17 ASN 17 71 71 ASN ASN F . n F 1 18 GLY 18 72 72 GLY GLY F . n F 1 19 VAL 19 73 73 VAL VAL F . n F 1 20 ARG 20 74 74 ARG ARG F . n F 1 21 ILE 21 75 75 ILE ILE F . n G 1 1 MET 1 55 55 MET MET G . n G 1 2 ILE 2 56 56 ILE ILE G . n G 1 3 VAL 3 57 57 VAL VAL G . n G 1 4 GLY 4 58 58 GLY GLY G . n G 1 5 GLN 5 59 59 GLN GLN G . n G 1 6 GLU 6 60 60 GLU GLU G . n G 1 7 LYS 7 61 61 LYS LYS G . n G 1 8 PRO 8 62 62 PRO PRO G . n G 1 9 TYR 9 63 63 TYR TYR G . n G 1 10 GLN 10 64 64 GLN GLN G . n G 1 11 ASN 11 65 65 ASN ASN G . n G 1 12 LYS 12 66 66 LYS LYS G . n G 1 13 ASN 13 67 67 ASN ASN G . n G 1 14 ALA 14 68 68 ALA ALA G . n G 1 15 ILE 15 69 69 ILE ILE G . n G 1 16 ASN 16 70 70 ASN ASN G . n G 1 17 ASN 17 71 71 ASN ASN G . n G 1 18 GLY 18 72 72 GLY GLY G . n G 1 19 VAL 19 73 73 VAL VAL G . n G 1 20 ARG 20 74 74 ARG ARG G . n G 1 21 ILE 21 75 75 ILE ILE G . n H 1 1 MET 1 55 55 MET MET H . n H 1 2 ILE 2 56 56 ILE ILE H . n H 1 3 VAL 3 57 57 VAL VAL H . n H 1 4 GLY 4 58 58 GLY GLY H . n H 1 5 GLN 5 59 59 GLN GLN H . n H 1 6 GLU 6 60 60 GLU GLU H . n H 1 7 LYS 7 61 61 LYS LYS H . n H 1 8 PRO 8 62 62 PRO PRO H . n H 1 9 TYR 9 63 63 TYR TYR H . n H 1 10 GLN 10 64 64 GLN GLN H . n H 1 11 ASN 11 65 65 ASN ASN H . n H 1 12 LYS 12 66 66 LYS LYS H . n H 1 13 ASN 13 67 67 ASN ASN H . n H 1 14 ALA 14 68 68 ALA ALA H . n H 1 15 ILE 15 69 69 ILE ILE H . n H 1 16 ASN 16 70 70 ASN ASN H . n H 1 17 ASN 17 71 71 ASN ASN H . n H 1 18 GLY 18 72 72 GLY GLY H . n H 1 19 VAL 19 73 73 VAL VAL H . n H 1 20 ARG 20 74 74 ARG ARG H . n H 1 21 ILE 21 75 75 ILE ILE H . n I 1 1 MET 1 55 55 MET MET I . n I 1 2 ILE 2 56 56 ILE ILE I . n I 1 3 VAL 3 57 57 VAL VAL I . n I 1 4 GLY 4 58 58 GLY GLY I . n I 1 5 GLN 5 59 59 GLN GLN I . n I 1 6 GLU 6 60 60 GLU GLU I . n I 1 7 LYS 7 61 61 LYS LYS I . n I 1 8 PRO 8 62 62 PRO PRO I . n I 1 9 TYR 9 63 63 TYR TYR I . n I 1 10 GLN 10 64 64 GLN GLN I . n I 1 11 ASN 11 65 65 ASN ASN I . n I 1 12 LYS 12 66 66 LYS LYS I . n I 1 13 ASN 13 67 67 ASN ASN I . n I 1 14 ALA 14 68 68 ALA ALA I . n I 1 15 ILE 15 69 69 ILE ILE I . n I 1 16 ASN 16 70 70 ASN ASN I . n I 1 17 ASN 17 71 71 ASN ASN I . n I 1 18 GLY 18 72 72 GLY GLY I . n I 1 19 VAL 19 73 73 VAL VAL I . n I 1 20 ARG 20 74 74 ARG ARG I . n I 1 21 ILE 21 75 75 ILE ILE I . n J 1 1 MET 1 55 55 MET MET J . n J 1 2 ILE 2 56 56 ILE ILE J . n J 1 3 VAL 3 57 57 VAL VAL J . n J 1 4 GLY 4 58 58 GLY GLY J . n J 1 5 GLN 5 59 59 GLN GLN J . n J 1 6 GLU 6 60 60 GLU GLU J . n J 1 7 LYS 7 61 61 LYS LYS J . n J 1 8 PRO 8 62 62 PRO PRO J . n J 1 9 TYR 9 63 63 TYR TYR J . n J 1 10 GLN 10 64 64 GLN GLN J . n J 1 11 ASN 11 65 65 ASN ASN J . n J 1 12 LYS 12 66 66 LYS LYS J . n J 1 13 ASN 13 67 67 ASN ASN J . n J 1 14 ALA 14 68 68 ALA ALA J . n J 1 15 ILE 15 69 69 ILE ILE J . n J 1 16 ASN 16 70 70 ASN ASN J . n J 1 17 ASN 17 71 71 ASN ASN J . n J 1 18 GLY 18 72 72 GLY GLY J . n J 1 19 VAL 19 73 73 VAL VAL J . n J 1 20 ARG 20 74 74 ARG ARG J . n J 1 21 ILE 21 75 75 ILE ILE J . n # _pdbx_contact_author.id 3 _pdbx_contact_author.email jarod7@gmail.com _pdbx_contact_author.name_first Jose _pdbx_contact_author.name_last Rodriguez _pdbx_contact_author.name_mi A. _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-0248-4964 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2023-08-16 2 'Structure model' 1 1 2023-09-13 3 'Structure model' 1 2 2023-11-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.pdbx_database_id_DOI' 2 2 'Structure model' '_citation.pdbx_database_id_PubMed' 3 2 'Structure model' '_citation.title' 4 2 'Structure model' '_citation_author.identifier_ORCID' 5 3 'Structure model' '_citation.journal_volume' 6 3 'Structure model' '_citation.page_first' 7 3 'Structure model' '_citation.page_last' # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name PHENIX _software.os ? _software.os_version ? _software.type ? _software.version 1.20_4459: _software.pdbx_ordinal 1 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 8G2V _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space REAL _em_3d_fitting.ref_protocol 'AB INITIO MODEL' # _em_3d_reconstruction.entry_id 8G2V _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 2.715 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 24770 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type HELICAL # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 6.5 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'Recombinant human LECT2 amyloid fibril core.' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 8G2V _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 800 _em_imaging.nominal_defocus_max 1800 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material GOLD _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type 'Quantifoil R1.2/1.3' _em_sample_support.details ? _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_vitrification.entry_id 8G2V _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 8G2V _em_experiment.id 1 _em_experiment.reconstruction_method HELICAL _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 GLN N N N N 58 GLN CA C N S 59 GLN C C N N 60 GLN O O N N 61 GLN CB C N N 62 GLN CG C N N 63 GLN CD C N N 64 GLN OE1 O N N 65 GLN NE2 N N N 66 GLN OXT O N N 67 GLN H H N N 68 GLN H2 H N N 69 GLN HA H N N 70 GLN HB2 H N N 71 GLN HB3 H N N 72 GLN HG2 H N N 73 GLN HG3 H N N 74 GLN HE21 H N N 75 GLN HE22 H N N 76 GLN HXT H N N 77 GLU N N N N 78 GLU CA C N S 79 GLU C C N N 80 GLU O O N N 81 GLU CB C N N 82 GLU CG C N N 83 GLU CD C N N 84 GLU OE1 O N N 85 GLU OE2 O N N 86 GLU OXT O N N 87 GLU H H N N 88 GLU H2 H N N 89 GLU HA H N N 90 GLU HB2 H N N 91 GLU HB3 H N N 92 GLU HG2 H N N 93 GLU HG3 H N N 94 GLU HE2 H N N 95 GLU HXT H N N 96 GLY N N N N 97 GLY CA C N N 98 GLY C C N N 99 GLY O O N N 100 GLY OXT O N N 101 GLY H H N N 102 GLY H2 H N N 103 GLY HA2 H N N 104 GLY HA3 H N N 105 GLY HXT H N N 106 ILE N N N N 107 ILE CA C N S 108 ILE C C N N 109 ILE O O N N 110 ILE CB C N S 111 ILE CG1 C N N 112 ILE CG2 C N N 113 ILE CD1 C N N 114 ILE OXT O N N 115 ILE H H N N 116 ILE H2 H N N 117 ILE HA H N N 118 ILE HB H N N 119 ILE HG12 H N N 120 ILE HG13 H N N 121 ILE HG21 H N N 122 ILE HG22 H N N 123 ILE HG23 H N N 124 ILE HD11 H N N 125 ILE HD12 H N N 126 ILE HD13 H N N 127 ILE HXT H N N 128 LYS N N N N 129 LYS CA C N S 130 LYS C C N N 131 LYS O O N N 132 LYS CB C N N 133 LYS CG C N N 134 LYS CD C N N 135 LYS CE C N N 136 LYS NZ N N N 137 LYS OXT O N N 138 LYS H H N N 139 LYS H2 H N N 140 LYS HA H N N 141 LYS HB2 H N N 142 LYS HB3 H N N 143 LYS HG2 H N N 144 LYS HG3 H N N 145 LYS HD2 H N N 146 LYS HD3 H N N 147 LYS HE2 H N N 148 LYS HE3 H N N 149 LYS HZ1 H N N 150 LYS HZ2 H N N 151 LYS HZ3 H N N 152 LYS HXT H N N 153 MET N N N N 154 MET CA C N S 155 MET C C N N 156 MET O O N N 157 MET CB C N N 158 MET CG C N N 159 MET SD S N N 160 MET CE C N N 161 MET OXT O N N 162 MET H H N N 163 MET H2 H N N 164 MET HA H N N 165 MET HB2 H N N 166 MET HB3 H N N 167 MET HG2 H N N 168 MET HG3 H N N 169 MET HE1 H N N 170 MET HE2 H N N 171 MET HE3 H N N 172 MET HXT H N N 173 PRO N N N N 174 PRO CA C N S 175 PRO C C N N 176 PRO O O N N 177 PRO CB C N N 178 PRO CG C N N 179 PRO CD C N N 180 PRO OXT O N N 181 PRO H H N N 182 PRO HA H N N 183 PRO HB2 H N N 184 PRO HB3 H N N 185 PRO HG2 H N N 186 PRO HG3 H N N 187 PRO HD2 H N N 188 PRO HD3 H N N 189 PRO HXT H N N 190 TYR N N N N 191 TYR CA C N S 192 TYR C C N N 193 TYR O O N N 194 TYR CB C N N 195 TYR CG C Y N 196 TYR CD1 C Y N 197 TYR CD2 C Y N 198 TYR CE1 C Y N 199 TYR CE2 C Y N 200 TYR CZ C Y N 201 TYR OH O N N 202 TYR OXT O N N 203 TYR H H N N 204 TYR H2 H N N 205 TYR HA H N N 206 TYR HB2 H N N 207 TYR HB3 H N N 208 TYR HD1 H N N 209 TYR HD2 H N N 210 TYR HE1 H N N 211 TYR HE2 H N N 212 TYR HH H N N 213 TYR HXT H N N 214 VAL N N N N 215 VAL CA C N S 216 VAL C C N N 217 VAL O O N N 218 VAL CB C N N 219 VAL CG1 C N N 220 VAL CG2 C N N 221 VAL OXT O N N 222 VAL H H N N 223 VAL H2 H N N 224 VAL HA H N N 225 VAL HB H N N 226 VAL HG11 H N N 227 VAL HG12 H N N 228 VAL HG13 H N N 229 VAL HG21 H N N 230 VAL HG22 H N N 231 VAL HG23 H N N 232 VAL HXT H N N 233 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 GLN N CA sing N N 55 GLN N H sing N N 56 GLN N H2 sing N N 57 GLN CA C sing N N 58 GLN CA CB sing N N 59 GLN CA HA sing N N 60 GLN C O doub N N 61 GLN C OXT sing N N 62 GLN CB CG sing N N 63 GLN CB HB2 sing N N 64 GLN CB HB3 sing N N 65 GLN CG CD sing N N 66 GLN CG HG2 sing N N 67 GLN CG HG3 sing N N 68 GLN CD OE1 doub N N 69 GLN CD NE2 sing N N 70 GLN NE2 HE21 sing N N 71 GLN NE2 HE22 sing N N 72 GLN OXT HXT sing N N 73 GLU N CA sing N N 74 GLU N H sing N N 75 GLU N H2 sing N N 76 GLU CA C sing N N 77 GLU CA CB sing N N 78 GLU CA HA sing N N 79 GLU C O doub N N 80 GLU C OXT sing N N 81 GLU CB CG sing N N 82 GLU CB HB2 sing N N 83 GLU CB HB3 sing N N 84 GLU CG CD sing N N 85 GLU CG HG2 sing N N 86 GLU CG HG3 sing N N 87 GLU CD OE1 doub N N 88 GLU CD OE2 sing N N 89 GLU OE2 HE2 sing N N 90 GLU OXT HXT sing N N 91 GLY N CA sing N N 92 GLY N H sing N N 93 GLY N H2 sing N N 94 GLY CA C sing N N 95 GLY CA HA2 sing N N 96 GLY CA HA3 sing N N 97 GLY C O doub N N 98 GLY C OXT sing N N 99 GLY OXT HXT sing N N 100 ILE N CA sing N N 101 ILE N H sing N N 102 ILE N H2 sing N N 103 ILE CA C sing N N 104 ILE CA CB sing N N 105 ILE CA HA sing N N 106 ILE C O doub N N 107 ILE C OXT sing N N 108 ILE CB CG1 sing N N 109 ILE CB CG2 sing N N 110 ILE CB HB sing N N 111 ILE CG1 CD1 sing N N 112 ILE CG1 HG12 sing N N 113 ILE CG1 HG13 sing N N 114 ILE CG2 HG21 sing N N 115 ILE CG2 HG22 sing N N 116 ILE CG2 HG23 sing N N 117 ILE CD1 HD11 sing N N 118 ILE CD1 HD12 sing N N 119 ILE CD1 HD13 sing N N 120 ILE OXT HXT sing N N 121 LYS N CA sing N N 122 LYS N H sing N N 123 LYS N H2 sing N N 124 LYS CA C sing N N 125 LYS CA CB sing N N 126 LYS CA HA sing N N 127 LYS C O doub N N 128 LYS C OXT sing N N 129 LYS CB CG sing N N 130 LYS CB HB2 sing N N 131 LYS CB HB3 sing N N 132 LYS CG CD sing N N 133 LYS CG HG2 sing N N 134 LYS CG HG3 sing N N 135 LYS CD CE sing N N 136 LYS CD HD2 sing N N 137 LYS CD HD3 sing N N 138 LYS CE NZ sing N N 139 LYS CE HE2 sing N N 140 LYS CE HE3 sing N N 141 LYS NZ HZ1 sing N N 142 LYS NZ HZ2 sing N N 143 LYS NZ HZ3 sing N N 144 LYS OXT HXT sing N N 145 MET N CA sing N N 146 MET N H sing N N 147 MET N H2 sing N N 148 MET CA C sing N N 149 MET CA CB sing N N 150 MET CA HA sing N N 151 MET C O doub N N 152 MET C OXT sing N N 153 MET CB CG sing N N 154 MET CB HB2 sing N N 155 MET CB HB3 sing N N 156 MET CG SD sing N N 157 MET CG HG2 sing N N 158 MET CG HG3 sing N N 159 MET SD CE sing N N 160 MET CE HE1 sing N N 161 MET CE HE2 sing N N 162 MET CE HE3 sing N N 163 MET OXT HXT sing N N 164 PRO N CA sing N N 165 PRO N CD sing N N 166 PRO N H sing N N 167 PRO CA C sing N N 168 PRO CA CB sing N N 169 PRO CA HA sing N N 170 PRO C O doub N N 171 PRO C OXT sing N N 172 PRO CB CG sing N N 173 PRO CB HB2 sing N N 174 PRO CB HB3 sing N N 175 PRO CG CD sing N N 176 PRO CG HG2 sing N N 177 PRO CG HG3 sing N N 178 PRO CD HD2 sing N N 179 PRO CD HD3 sing N N 180 PRO OXT HXT sing N N 181 TYR N CA sing N N 182 TYR N H sing N N 183 TYR N H2 sing N N 184 TYR CA C sing N N 185 TYR CA CB sing N N 186 TYR CA HA sing N N 187 TYR C O doub N N 188 TYR C OXT sing N N 189 TYR CB CG sing N N 190 TYR CB HB2 sing N N 191 TYR CB HB3 sing N N 192 TYR CG CD1 doub Y N 193 TYR CG CD2 sing Y N 194 TYR CD1 CE1 sing Y N 195 TYR CD1 HD1 sing N N 196 TYR CD2 CE2 doub Y N 197 TYR CD2 HD2 sing N N 198 TYR CE1 CZ doub Y N 199 TYR CE1 HE1 sing N N 200 TYR CE2 CZ sing Y N 201 TYR CE2 HE2 sing N N 202 TYR CZ OH sing N N 203 TYR OH HH sing N N 204 TYR OXT HXT sing N N 205 VAL N CA sing N N 206 VAL N H sing N N 207 VAL N H2 sing N N 208 VAL CA C sing N N 209 VAL CA CB sing N N 210 VAL CA HA sing N N 211 VAL C O doub N N 212 VAL C OXT sing N N 213 VAL CB CG1 sing N N 214 VAL CB CG2 sing N N 215 VAL CB HB sing N N 216 VAL CG1 HG11 sing N N 217 VAL CG1 HG12 sing N N 218 VAL CG1 HG13 sing N N 219 VAL CG2 HG21 sing N N 220 VAL CG2 HG22 sing N N 221 VAL CG2 HG23 sing N N 222 VAL OXT HXT sing N N 223 # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type NONE # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units ? _em_entity_assembly_molwt.value ? # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 562 _em_entity_assembly_recombinant.organism 'Escherichia coli' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.details ? _em_helical_entity.axial_symmetry C1 _em_helical_entity.angular_rotation_per_subunit 179.49 _em_helical_entity.axial_rise_per_subunit 2.345 # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 1.3 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 BIOQUANTUM (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # _em_imaging_optics.chr_aberration_corrector ? _em_imaging_optics.energyfilter_lower ? _em_imaging_optics.energyfilter_slit_width ? _em_imaging_optics.energyfilter_name ? _em_imaging_optics.energyfilter_upper ? _em_imaging_optics.id 1 _em_imaging_optics.imaging_id 1 _em_imaging_optics.phase_plate 'VOLTA PHASE PLATE' _em_imaging_optics.sph_aberration_corrector ? _em_imaging_optics.details ? # _em_particle_selection.details ? _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.method ? _em_particle_selection.num_particles_selected 1622942 _em_particle_selection.reference_model ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? crYOLO ? 'IMAGE ACQUISITION' ? 2 ? ? 1 EPU ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? CTFFIND 4 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? 1 ? Coot ? OTHER ? 8 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 9 1 ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 10 1 ? ? RELION 3.1 CLASSIFICATION ? 11 1 ? ? RELION 3.1 RECONSTRUCTION ? 12 1 ? ? RELION 3.1 'MODEL REFINEMENT' ? 13 ? 1 ? PHENIX ? 'VOLUME SELECTION' ? 14 1 1 1 ? ? 'SERIES ALIGNMENT' ? 15 1 1 1 ? ? 'MOLECULAR REPLACEMENT' ? 16 1 1 1 ? ? 'LATTICE DISTORTION CORRECTION' ? 17 1 1 1 ? ? 'SYMMETRY DETERMINATION' ? 18 1 1 1 ? ? 'CRYSTALLOGRAPHY MERGING' ? 19 1 1 1 ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Department of Energy (DOE, United States)' 'United States' DE-FC02-02ER63421 1 'National Science Foundation (NSF, United States)' 'United States' DMR-1548924 2 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' 'Grant R35 GM128867' 3 'National Institutes of Health/National Center for Research Resources (NIH/NCRR)' 'United States' 5T32GM008496 4 'National Institutes of Health/National Center for Research Resources (NIH/NCRR)' 'United States' 'U24 GM129541' 5 # loop_ _pdbx_struct_assembly_auth_evidence.id _pdbx_struct_assembly_auth_evidence.assembly_id _pdbx_struct_assembly_auth_evidence.experimental_support _pdbx_struct_assembly_auth_evidence.details 1 1 'mass spectrometry' ? 2 1 'native gel electrophoresis' ? #