HEADER LIGASE 15-FEB-23 8G6P TITLE CRYSTAL STRUCTURE OF MYCOBACTERIUM THERMORESISTIBILE MURE IN COMPLEX TITLE 2 WITH ADP AND 2,6-DIAMINOPIMELIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE--2,6- COMPND 3 DIAMINOPIMELATE LIGASE; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOLICIBACTERIUM THERMORESISTIBILE; SOURCE 3 ORGANISM_TAXID: 1797; SOURCE 4 GENE: MURE; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ADP-BINDING LIGASE, CELL WALL BIOSYNTHESIS, MURE, M-DAP COMPLEX, KEYWDS 2 LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR N.O.ROSSINI,C.S.SILVA,M.V.B.DIAS REVDAT 3 15-NOV-23 8G6P 1 ATOM REVDAT 2 19-JUL-23 8G6P 1 REMARK REVDAT 1 05-APR-23 8G6P 0 JRNL AUTH N.O.ROSSINI,C.SILVA,M.V.B.DIAS JRNL TITL THE CRYSTAL STRUCTURE OF MYCOBACTERIUM THERMORESISTIBILE JRNL TITL 2 MURE LIGASE REVEALS THE BINDING MODE OF THE SUBSTRATE JRNL TITL 3 M-DIAMINOPIMELATE. JRNL REF J.STRUCT.BIOL. V. 215 07957 2023 JRNL REFN ESSN 1095-8657 JRNL PMID 36944394 JRNL DOI 10.1016/J.JSB.2023.107957 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 85462 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4275 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.4000 - 4.5000 1.00 3011 175 0.1829 0.1671 REMARK 3 2 4.5000 - 3.5800 1.00 2850 163 0.1394 0.1744 REMARK 3 3 3.5800 - 3.1200 1.00 2802 140 0.1539 0.1831 REMARK 3 4 3.1200 - 2.8400 1.00 2751 161 0.1703 0.1882 REMARK 3 5 2.8400 - 2.6300 1.00 2777 134 0.1694 0.1940 REMARK 3 6 2.6300 - 2.4800 1.00 2750 143 0.1728 0.1903 REMARK 3 7 2.4800 - 2.3600 1.00 2761 124 0.1672 0.2131 REMARK 3 8 2.3600 - 2.2500 1.00 2714 135 0.1663 0.1622 REMARK 3 9 2.2500 - 2.1700 1.00 2700 141 0.1610 0.1775 REMARK 3 10 2.1700 - 2.0900 1.00 2724 143 0.1559 0.1792 REMARK 3 11 2.0900 - 2.0300 1.00 2682 157 0.1553 0.1905 REMARK 3 12 2.0300 - 1.9700 1.00 2717 122 0.1592 0.1596 REMARK 3 13 1.9700 - 1.9200 1.00 2734 142 0.1553 0.1947 REMARK 3 14 1.9200 - 1.8700 1.00 2690 135 0.1649 0.1793 REMARK 3 15 1.8700 - 1.8300 1.00 2715 146 0.1800 0.1939 REMARK 3 16 1.8300 - 1.7900 1.00 2663 136 0.1773 0.2151 REMARK 3 17 1.7900 - 1.7500 1.00 2684 144 0.1795 0.2015 REMARK 3 18 1.7500 - 1.7200 1.00 2707 140 0.1777 0.2035 REMARK 3 19 1.7200 - 1.6900 1.00 2665 139 0.1754 0.1934 REMARK 3 20 1.6900 - 1.6600 1.00 2666 157 0.1736 0.2133 REMARK 3 21 1.6600 - 1.6300 1.00 2673 140 0.1786 0.1994 REMARK 3 22 1.6300 - 1.6100 1.00 2656 123 0.1854 0.2219 REMARK 3 23 1.6100 - 1.5800 1.00 2716 137 0.1852 0.2258 REMARK 3 24 1.5800 - 1.5600 1.00 2645 158 0.1902 0.2017 REMARK 3 25 1.5600 - 1.5400 1.00 2678 124 0.2074 0.2508 REMARK 3 26 1.5400 - 1.5200 0.99 2662 133 0.2229 0.2634 REMARK 3 27 1.5200 - 1.5000 0.99 2641 146 0.2339 0.2260 REMARK 3 28 1.5000 - 1.4800 0.98 2610 141 0.2442 0.2688 REMARK 3 29 1.4800 - 1.4700 0.97 2574 143 0.2643 0.2835 REMARK 3 30 1.4700 - 1.4500 0.97 2569 153 0.2829 0.3102 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.290 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.63 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3964 REMARK 3 ANGLE : 0.894 5424 REMARK 3 CHIRALITY : 0.079 631 REMARK 3 PLANARITY : 0.008 727 REMARK 3 DIHEDRAL : 12.391 1466 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8G6P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-FEB-23. REMARK 100 THE DEPOSITION ID IS D_1000272285. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-NOV-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS SIRIUS REMARK 200 BEAMLINE : MANACA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9772 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.1 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 85597 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 47.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 25.60 REMARK 200 R MERGE (I) : 0.12200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 22.50 REMARK 200 R MERGE FOR SHELL (I) : 2.06800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, MAGNESIUM CHLORIDE, TRIS PH REMARK 280 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 119.13350 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 31.39600 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 31.39600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 178.70025 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 31.39600 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 31.39600 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 59.56675 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 31.39600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 31.39600 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 178.70025 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 31.39600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 31.39600 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 59.56675 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 119.13350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1500 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A -1 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 67 O HOH A 901 1.90 REMARK 500 O HOH A 1253 O HOH A 1455 1.95 REMARK 500 O HOH A 961 O HOH A 1469 1.97 REMARK 500 O HOH A 1315 O HOH A 1330 1.97 REMARK 500 O HOH A 903 O HOH A 1281 2.01 REMARK 500 O HOH A 1111 O HOH A 1423 2.01 REMARK 500 OD1 ASP A 454 O HOH A 902 2.02 REMARK 500 O HOH A 1053 O HOH A 1471 2.02 REMARK 500 O HOH A 926 O HOH A 1361 2.02 REMARK 500 O HOH A 1277 O HOH A 1341 2.03 REMARK 500 O HOH A 1128 O HOH A 1415 2.05 REMARK 500 O HOH A 1412 O HOH A 1462 2.06 REMARK 500 O HOH A 1329 O HOH A 1368 2.06 REMARK 500 O HOH A 999 O HOH A 1451 2.07 REMARK 500 O HOH A 1361 O HOH A 1420 2.08 REMARK 500 O HOH A 903 O HOH A 1054 2.08 REMARK 500 O HOH A 1353 O HOH A 1455 2.08 REMARK 500 O ALA A 143 O HOH A 903 2.08 REMARK 500 O HOH A 1193 O HOH A 1328 2.09 REMARK 500 O HOH A 1134 O HOH A 1376 2.09 REMARK 500 O HOH A 1247 O HOH A 1291 2.10 REMARK 500 O HOH A 1040 O HOH A 1451 2.11 REMARK 500 O HOH A 969 O HOH A 1295 2.11 REMARK 500 O HOH A 1455 O HOH A 1519 2.11 REMARK 500 O HOH A 1169 O HOH A 1302 2.11 REMARK 500 O HOH A 1162 O HOH A 1443 2.12 REMARK 500 O HOH A 1248 O HOH A 1481 2.13 REMARK 500 O HOH A 1051 O HOH A 1452 2.13 REMARK 500 O HOH A 987 O HOH A 1210 2.13 REMARK 500 NH1 ARG A 142 O HOH A 904 2.14 REMARK 500 O HOH A 982 O HOH A 1415 2.14 REMARK 500 O HOH A 1201 O HOH A 1269 2.14 REMARK 500 O THR A 506 O HOH A 905 2.15 REMARK 500 O HOH A 1022 O HOH A 1446 2.15 REMARK 500 O HOH A 1132 O HOH A 1312 2.15 REMARK 500 O HOH A 1365 O HOH A 1415 2.17 REMARK 500 O HOH A 1349 O HOH A 1451 2.18 REMARK 500 O HOH A 1301 O HOH A 1333 2.18 REMARK 500 O HOH A 1371 O HOH A 1408 2.19 REMARK 500 O HOH A 1234 O HOH A 1348 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1200 O HOH A 1396 5354 1.81 REMARK 500 O HOH A 1229 O HOH A 1465 5344 1.87 REMARK 500 O1 GOL A 802 O HOH A 993 5454 1.88 REMARK 500 O HOH A 1129 O HOH A 1390 1455 1.91 REMARK 500 O HOH A 1396 O HOH A 1397 5344 1.91 REMARK 500 O HOH A 1416 O HOH A 1444 5354 1.92 REMARK 500 O HOH A 1417 O HOH A 1501 5444 1.92 REMARK 500 O HOH A 1223 O HOH A 1469 5454 1.93 REMARK 500 O HOH A 1465 O HOH A 1503 5354 1.94 REMARK 500 O HOH A 902 O HOH A 1058 7465 2.01 REMARK 500 O HOH A 905 O HOH A 1367 4445 2.03 REMARK 500 O HOH A 1421 O HOH A 1452 5354 2.04 REMARK 500 NH2 ARG A 456 O HOH A 1035 7465 2.06 REMARK 500 NH1 ARG A 47 O HOH A 1324 7465 2.10 REMARK 500 O HOH A 1467 O HOH A 1469 5454 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 58 25.96 48.93 REMARK 500 ASP A 87 109.89 -59.19 REMARK 500 ASN A 99 75.50 -162.45 REMARK 500 ASP A 399 90.98 -10.34 REMARK 500 ARG A 425 -124.94 56.60 REMARK 500 PHE A 492 99.85 -161.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1521 DISTANCE = 6.89 ANGSTROMS REMARK 525 HOH A1522 DISTANCE = 7.26 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 811 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 131 OG1 REMARK 620 2 THR A 153 OG1 84.2 REMARK 620 3 GLU A 193 OE1 72.3 63.0 REMARK 620 4 ADP A 804 O2B 61.1 139.3 85.3 REMARK 620 5 ADP A 804 O3B 105.2 164.0 131.9 55.7 REMARK 620 6 HOH A1364 O 152.6 83.8 122.6 136.6 82.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 801 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 953 O REMARK 620 2 HOH A1027 O 84.0 REMARK 620 3 HOH A1056 O 89.6 92.5 REMARK 620 4 HOH A1109 O 94.1 177.8 86.3 REMARK 620 5 HOH A1480 O 175.2 94.1 86.1 87.7 REMARK 620 6 HOH A1482 O 92.9 94.0 173.2 87.2 91.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 810 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 945 O REMARK 620 2 HOH A 970 O 87.5 REMARK 620 3 HOH A1002 O 90.8 178.3 REMARK 620 4 HOH A1181 O 87.8 93.6 86.6 REMARK 620 5 HOH A1260 O 176.1 90.3 91.3 89.1 REMARK 620 N 1 2 3 4 DBREF1 8G6P A 1 506 UNP A0A100XI70_MYCTH DBREF2 8G6P A A0A100XI70 3 508 SEQADV 8G6P HIS A -1 UNP A0A100XI7 EXPRESSION TAG SEQADV 8G6P MET A 0 UNP A0A100XI7 EXPRESSION TAG SEQRES 1 A 508 HIS MET MET ASN LEU ARG PRO SER ASP PRO VAL GLY ALA SEQRES 2 A 508 SER LEU ARG HIS LEU ALA GLU GLN VAL HIS ALA VAL PRO SEQRES 3 A 508 ILE GLY SER VAL GLU VAL PRO ASP LEU HIS ILE SER GLY SEQRES 4 A 508 ILE THR LEU ARG SER GLN ASP ALA ARG ARG GLY ASP LEU SEQRES 5 A 508 PHE ALA ALA LEU ALA GLY ALA SER ALA HIS GLY ALA ASP SEQRES 6 A 508 HIS ALA ALA ASP ALA VAL ALA ARG GLY ALA VAL ALA VAL SEQRES 7 A 508 LEU THR ASP SER ALA GLY ALA THR ARG LEU ASP GLY THR SEQRES 8 A 508 VAL PRO ALA PRO VAL LEU VAL HIS PRO ASN PRO ARG THR SEQRES 9 A 508 VAL LEU GLY GLU LEU ALA ALA THR VAL TYR GLY ARG PRO SEQRES 10 A 508 ALA ASP ARG LEU ARG VAL ILE GLY ILE THR GLY THR SER SEQRES 11 A 508 GLY LYS THR THR THR ALA TYR LEU VAL GLU ALA GLY LEU SEQRES 12 A 508 ARG ALA ALA ASP ARG VAL PRO GLY LEU ILE GLY THR VAL SEQRES 13 A 508 GLY VAL ARG ILE ASP GLY MET ASP GLU PRO SER ALA LEU SEQRES 14 A 508 THR THR PRO GLU ALA PRO ASP LEU GLN ALA LEU LEU ALA SEQRES 15 A 508 VAL MET ALA ASP ARG GLY VAL ASP THR VAL VAL MET GLU SEQRES 16 A 508 VAL SER SER HIS ALA LEU SER LEU HIS ARG VAL ASP GLY SEQRES 17 A 508 VAL ARG PHE ALA VAL GLY GLY PHE THR ASN LEU SER ARG SEQRES 18 A 508 ASP HIS LEU ASP PHE HIS PRO THR MET ALA ASP TYR PHE SEQRES 19 A 508 ALA ALA KCX ALA ARG LEU PHE ASP PRO GLN ALA PRO THR SEQRES 20 A 508 CYS ALA GLU ARG SER VAL ILE CYS ILE ASP ASP GLU ALA SEQRES 21 A 508 GLY ARG ALA MET LEU ALA GLY ALA HIS ARG PRO VAL SER SEQRES 22 A 508 VAL SER ALA THR GLY GLN ARG ALA ASP TRP VAL ALA GLU SEQRES 23 A 508 ASP VAL ARG PHE ALA GLY PRO THR ALA GLN ASP PHE THR SEQRES 24 A 508 ALA VAL ASP PRO ALA GLY VAL ARG HIS ARG LEU ARG VAL SEQRES 25 A 508 GLY LEU PRO GLY ARG PHE ASN ILE ALA ASN CYS LEU LEU SEQRES 26 A 508 ALA VAL ALA LEU LEU ASP ALA VAL GLY VAL SER PRO ALA SEQRES 27 A 508 GLN ALA ALA PRO GLY LEU ARG THR ALA THR VAL PRO GLY SEQRES 28 A 508 ARG LEU GLU PRO VAL ASP ARG GLY GLN ASP PHE LEU ALA SEQRES 29 A 508 LEU VAL ASP TYR ALA HIS LYS PRO GLY ALA LEU SER ALA SEQRES 30 A 508 VAL LEU ASP SER LEU ARG ALA SER ALA THR GLY ARG LEU SEQRES 31 A 508 ALA VAL VAL PHE GLY ALA GLY GLY ASN ARG ASP PRO GLY SEQRES 32 A 508 LYS ARG GLU GLU MET GLY ARG VAL ALA ALA GLU ARG ALA SEQRES 33 A 508 ASP LEU VAL VAL VAL THR ASP ASP ASN PRO ARG ASP GLU SEQRES 34 A 508 ASP PRO ALA ALA ILE ARG ALA ALA ILE VAL ALA GLY ALA SEQRES 35 A 508 LYS SER VAL ALA GLY GLN ALA GLN ILE VAL GLU ILE ALA SEQRES 36 A 508 ASP ARG ARG GLU ALA ILE ASP HIS ALA VAL ARG TRP ALA SEQRES 37 A 508 GLY ALA GLY ASP VAL VAL LEU ILE ALA GLY LYS GLY HIS SEQRES 38 A 508 GLU SER GLY GLN THR ARG GLY GLY GLN THR ARG PRO PHE SEQRES 39 A 508 ASP ASP ARG ALA GLU LEU ALA ALA ALA LEU VAL ALA ARG SEQRES 40 A 508 THR MODRES 8G6P KCX A 235 LYS MODIFIED RESIDUE HET KCX A 235 12 HET MG A 801 1 HET GOL A 802 6 HET GOL A 803 6 HET ADP A 804 39 HET GOL A 805 14 HET GOL A 806 14 HET GOL A 807 14 HET GOL A 808 6 HET API A 809 13 HET MG A 810 1 HET MG A 811 1 HETNAM KCX LYSINE NZ-CARBOXYLIC ACID HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM API 2,6-DIAMINOPIMELIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 KCX C7 H14 N2 O4 FORMUL 2 MG 3(MG 2+) FORMUL 3 GOL 6(C3 H8 O3) FORMUL 5 ADP C10 H15 N5 O10 P2 FORMUL 10 API C7 H14 N2 O4 FORMUL 13 HOH *622(H2 O) HELIX 1 AA1 LEU A 13 HIS A 21 1 9 HELIX 2 AA2 ARG A 41 ALA A 45 5 5 HELIX 3 AA3 HIS A 60 ASP A 63 5 4 HELIX 4 AA4 HIS A 64 ARG A 71 1 8 HELIX 5 AA5 ASP A 79 ASP A 87 1 9 HELIX 6 AA6 ASN A 99 THR A 102 5 4 HELIX 7 AA7 VAL A 103 TYR A 112 1 10 HELIX 8 AA8 ARG A 114 ARG A 118 5 5 HELIX 9 AA9 GLY A 129 ALA A 144 1 16 HELIX 10 AB1 GLU A 171 ARG A 185 1 15 HELIX 11 AB2 SER A 195 LEU A 201 1 7 HELIX 12 AB3 THR A 227 ARG A 237 1 11 HELIX 13 AB4 ASP A 256 ALA A 266 1 11 HELIX 14 AB5 ARG A 315 VAL A 331 1 17 HELIX 15 AB6 SER A 334 ALA A 345 1 12 HELIX 16 AB7 LYS A 369 LEU A 380 1 12 HELIX 17 AB8 GLY A 401 ALA A 414 1 14 HELIX 18 AB9 ASP A 428 VAL A 443 1 16 HELIX 19 AC1 ASP A 454 ALA A 466 1 13 HELIX 20 AC2 ASP A 493 THR A 506 1 14 SHEET 1 AA1 2 ALA A 11 SER A 12 0 SHEET 2 AA1 2 HIS A 34 ILE A 35 -1 O ILE A 35 N ALA A 11 SHEET 1 AA2 5 VAL A 23 PRO A 24 0 SHEET 2 AA2 5 VAL A 94 VAL A 96 -1 O VAL A 96 N VAL A 23 SHEET 3 AA2 5 ALA A 75 THR A 78 1 N VAL A 76 O LEU A 95 SHEET 4 AA2 5 ASP A 49 ALA A 53 1 N PHE A 51 O ALA A 75 SHEET 5 AA2 5 GLY A 37 THR A 39 1 N THR A 39 O ALA A 52 SHEET 1 AA311 MET A 161 ASP A 162 0 SHEET 2 AA311 VAL A 156 ILE A 158 -1 N ILE A 158 O MET A 161 SHEET 3 AA311 PRO A 148 ILE A 151 -1 N LEU A 150 O ARG A 157 SHEET 4 AA311 THR A 189 GLU A 193 1 O VAL A 191 N GLY A 149 SHEET 5 AA311 ARG A 120 THR A 125 1 N ILE A 122 O VAL A 190 SHEET 6 AA311 VAL A 211 PHE A 214 1 O GLY A 213 N THR A 125 SHEET 7 AA311 ARG A 249 CYS A 253 1 O VAL A 251 N GLY A 212 SHEET 8 AA311 PRO A 269 SER A 273 1 O VAL A 270 N ILE A 252 SHEET 9 AA311 TRP A 281 PHE A 288 1 O TRP A 281 N SER A 273 SHEET 10 AA311 GLN A 294 VAL A 299 -1 O ASP A 295 N ARG A 287 SHEET 11 AA311 ARG A 305 VAL A 310 -1 O LEU A 308 N PHE A 296 SHEET 1 AA4 6 GLU A 352 PRO A 353 0 SHEET 2 AA4 6 LEU A 361 ASP A 365 -1 O VAL A 364 N GLU A 352 SHEET 3 AA4 6 VAL A 471 ALA A 475 1 O VAL A 472 N LEU A 363 SHEET 4 AA4 6 LEU A 388 PHE A 392 1 N ALA A 389 O VAL A 471 SHEET 5 AA4 6 LEU A 416 VAL A 419 1 O VAL A 418 N VAL A 390 SHEET 6 AA4 6 GLN A 448 GLU A 451 1 O VAL A 450 N VAL A 419 SHEET 1 AA5 2 GLN A 483 ARG A 485 0 SHEET 2 AA5 2 GLN A 488 ARG A 490 -1 O GLN A 488 N ARG A 485 LINK C ALA A 234 N KCX A 235 1555 1555 1.33 LINK C KCX A 235 N ALA A 236 1555 1555 1.33 LINK OG1 THR A 131 MG MG A 811 1555 1555 2.89 LINK OG1BTHR A 153 MG MG A 811 1555 1555 2.64 LINK OE1 GLU A 193 MG MG A 811 1555 1555 2.69 LINK MG MG A 801 O HOH A 953 1555 1555 2.03 LINK MG MG A 801 O HOH A1027 1555 1555 2.05 LINK MG MG A 801 O HOH A1056 1555 1555 2.09 LINK MG MG A 801 O HOH A1109 1555 1555 2.13 LINK MG MG A 801 O HOH A1480 1555 1555 2.07 LINK MG MG A 801 O HOH A1482 1555 1555 2.10 LINK O2B ADP A 804 MG MG A 811 1555 1555 2.21 LINK O3B ADP A 804 MG MG A 811 1555 1555 2.93 LINK MG MG A 810 O HOH A 945 1555 1555 2.02 LINK MG MG A 810 O HOH A 970 1555 1555 2.09 LINK MG MG A 810 O HOH A1002 1555 1555 2.10 LINK MG MG A 810 O HOH A1181 1555 1555 2.06 LINK MG MG A 810 O HOH A1260 1555 1555 2.09 LINK MG MG A 811 O HOH A1364 1555 1555 2.63 CRYST1 62.792 62.792 238.267 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015926 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015926 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004197 0.00000