data_8G82 # _entry.id 8G82 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.388 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8G82 pdb_00008g82 10.2210/pdb8g82/pdb WWPDB D_1000272311 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2024-01-24 2 'Structure model' 1 1 2024-02-07 3 'Structure model' 1 2 2024-03-13 4 'Structure model' 1 3 2024-03-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' pdbx_related_exp_data_set 4 4 'Structure model' citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.pdbx_database_id_DOI' 6 2 'Structure model' '_citation.pdbx_database_id_PubMed' 7 2 'Structure model' '_citation.title' 8 2 'Structure model' '_citation.year' 9 4 'Structure model' '_citation.journal_volume' 10 4 'Structure model' '_citation.page_first' 11 4 'Structure model' '_citation.page_last' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8G82 _pdbx_database_status.recvd_initial_deposition_date 2023-02-17 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email pjl28@drexel.edu _pdbx_contact_author.name_first Patrick _pdbx_contact_author.name_last Loll _pdbx_contact_author.name_mi J _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-5416-4500 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Loll, P.J.' 1 0000-0001-5416-4500 'Park, J.H.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Iucrj _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2052-2525 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 11 _citation.language ? _citation.page_first 133 _citation.page_last 139 _citation.title 'Crystal structure of vancomycin bound to the resistance determinant D-alanine-D-serine.' _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1107/S2052252524000289 _citation.pdbx_database_id_PubMed 38277167 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Park, J.H.' 1 ? primary 'Reviello, R.E.' 2 ? primary 'Loll, P.J.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat Vancomycin 1149.977 10 ? ? ? ? 2 polymer syn D-Ala-D-Ser 202.209 10 ? ? ? ? 3 branched man 'vancosamine-(1-2)-beta-D-glucopyranose' 323.340 8 ? ? ? ? 4 non-polymer syn 'TRIETHYLENE GLYCOL' 150.173 1 ? ? ? ? 5 non-polymer nat 'BORIC ACID' 61.833 3 ? ? ? ? 6 non-polymer syn 'DIMETHYL SULFOXIDE' 78.133 4 ? ? ? ? 7 non-polymer man beta-D-glucopyranose 180.156 2 ? ? ? ? 8 non-polymer man vancosamine 161.199 2 ? ? ? ? 9 water nat water 18.015 258 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no yes '(MLU)(OMZ)N(GHP)(GHP)(OMY)(3FG)' XXNGGYX A,B,C,D,E,F,G,H,I,J ? 2 'polypeptide(D)' no yes '(ACE)(DAL)(DSN)' XAS K,L,M,N,O,P,Q,R,S,T ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'TRIETHYLENE GLYCOL' PGE 5 'BORIC ACID' BO3 6 'DIMETHYL SULFOXIDE' DMS 7 beta-D-glucopyranose BGC 8 vancosamine RER 9 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MLU n 1 2 OMZ n 1 3 ASN n 1 4 GHP n 1 5 GHP n 1 6 OMY n 1 7 3FG n 2 1 ACE n 2 2 DAL n 2 3 DSN n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num 1 _entity_src_nat.pdbx_end_seq_num 7 _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Amycolatopsis orientalis' _entity_src_nat.pdbx_ncbi_taxonomy_id 31958 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 3 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 3 'WURCS=2.0/2,2,1/[a2122h-1b_1-5][ad621m-1a_1-5_3*C_3*N]/1-2/a2-b1' WURCS PDB2Glycan 1.1.0 2 3 '[][b-D-Glcp]{[(2+1)][a-L-2-deoxy-Fucp3N]{}}' LINUCS PDB-CARE ? # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.comp_id_1 RER _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_2 BGC _pdbx_entity_branch_link.atom_id_2 O2 _pdbx_entity_branch_link.leaving_atom_id_2 HO2 _pdbx_entity_branch_link.value_order sing _pdbx_entity_branch_link.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 3FG 'L-peptide linking' . '(2S)-amino(3,5-dihydroxyphenyl)ethanoic acid' ? 'C8 H9 N O4' 183.161 ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 BGC 'D-saccharide, beta linking' . beta-D-glucopyranose 'beta-D-glucose; D-glucose; glucose' 'C6 H12 O6' 180.156 BO3 non-polymer . 'BORIC ACID' ? 'B H3 O3' 61.833 DAL 'D-peptide linking' . D-ALANINE ? 'C3 H7 N O2' 89.093 DMS non-polymer . 'DIMETHYL SULFOXIDE' ? 'C2 H6 O S' 78.133 DSN 'D-peptide linking' . D-SERINE ? 'C3 H7 N O3' 105.093 GHP 'D-peptide linking' . '(2R)-amino(4-hydroxyphenyl)ethanoic acid' ? 'C8 H9 N O3' 167.162 HOH non-polymer . WATER ? 'H2 O' 18.015 MLU 'D-peptide linking' . N-methyl-D-leucine ? 'C7 H15 N O2' 145.199 OMY 'L-peptide linking' n '(betaR)-3-chloro-beta-hydroxy-L-tyrosine' ? 'C9 H10 Cl N O4' 231.633 OMZ 'D-peptide linking' . '(betaR)-3-CHLORO-BETA-HYDROXY-D-TYROSINE' ? 'C9 H10 Cl N O4' 231.633 PGE non-polymer . 'TRIETHYLENE GLYCOL' ? 'C6 H14 O4' 150.173 RER 'L-saccharide, alpha linking' . vancosamine '(1R,3S,4S,5S)-3-amino-2,3,6-trideoxy-3-methyl-alpha-L-arabino-hexopyranose' 'C7 H15 N O3' 161.199 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BGC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpb BGC 'COMMON NAME' GMML 1.0 b-D-glucopyranose BGC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Glcp BGC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Glc # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MLU 1 1 1 MLU MLU A . n A 1 2 OMZ 2 2 2 OMZ OMZ A . n A 1 3 ASN 3 3 3 ASN ASN A . n A 1 4 GHP 4 4 4 GHP PG9 A . n A 1 5 GHP 5 5 5 GHP PG5 A . n A 1 6 OMY 6 6 6 OMY OMY A . n A 1 7 3FG 7 7 7 3FG PG7 A . n B 1 1 MLU 1 1 1 MLU MLU B . n B 1 2 OMZ 2 2 2 OMZ OMZ B . n B 1 3 ASN 3 3 3 ASN ASN B . n B 1 4 GHP 4 4 4 GHP PG9 B . n B 1 5 GHP 5 5 5 GHP PG5 B . n B 1 6 OMY 6 6 6 OMY OMY B . n B 1 7 3FG 7 7 7 3FG PG7 B . n C 1 1 MLU 1 1 1 MLU MLU C . n C 1 2 OMZ 2 2 2 OMZ OMZ C . n C 1 3 ASN 3 3 3 ASN ASN C . n C 1 4 GHP 4 4 4 GHP PG9 C . n C 1 5 GHP 5 5 5 GHP PG5 C . n C 1 6 OMY 6 6 6 OMY OMY C . n C 1 7 3FG 7 7 7 3FG PG7 C . n D 1 1 MLU 1 1 1 MLU MLU D . n D 1 2 OMZ 2 2 2 OMZ OMZ D . n D 1 3 ASN 3 3 3 ASN ASN D . n D 1 4 GHP 4 4 4 GHP PG9 D . n D 1 5 GHP 5 5 5 GHP PG5 D . n D 1 6 OMY 6 6 6 OMY OMY D . n D 1 7 3FG 7 7 7 3FG PG7 D . n E 1 1 MLU 1 1 1 MLU MLU E . n E 1 2 OMZ 2 2 2 OMZ OMZ E . n E 1 3 ASN 3 3 3 ASN ASN E . n E 1 4 GHP 4 4 4 GHP PG9 E . n E 1 5 GHP 5 5 5 GHP PG5 E . n E 1 6 OMY 6 6 6 OMY OMY E . n E 1 7 3FG 7 7 7 3FG PG7 E . n F 1 1 MLU 1 1 1 MLU MLU F . n F 1 2 OMZ 2 2 2 OMZ OMZ F . n F 1 3 ASN 3 3 3 ASN ASN F . n F 1 4 GHP 4 4 4 GHP PG9 F . n F 1 5 GHP 5 5 5 GHP PG5 F . n F 1 6 OMY 6 6 6 OMY OMY F . n F 1 7 3FG 7 7 7 3FG PG7 F . n G 1 1 MLU 1 1 1 MLU MLU G . n G 1 2 OMZ 2 2 2 OMZ OMZ G . n G 1 3 ASN 3 3 3 ASN ASN G . n G 1 4 GHP 4 4 4 GHP PG9 G . n G 1 5 GHP 5 5 5 GHP PG5 G . n G 1 6 OMY 6 6 6 OMY OMY G . n G 1 7 3FG 7 7 7 3FG PG7 G . n H 1 1 MLU 1 1 1 MLU MLU H . n H 1 2 OMZ 2 2 2 OMZ OMZ H . n H 1 3 ASN 3 3 3 ASN ASN H . n H 1 4 GHP 4 4 4 GHP PG9 H . n H 1 5 GHP 5 5 5 GHP PG5 H . n H 1 6 OMY 6 6 6 OMY OMY H . n H 1 7 3FG 7 7 7 3FG PG7 H . n I 1 1 MLU 1 1 1 MLU MLU I . n I 1 2 OMZ 2 2 2 OMZ OMZ I . n I 1 3 ASN 3 3 3 ASN ASN I . n I 1 4 GHP 4 4 4 GHP PG9 I . n I 1 5 GHP 5 5 5 GHP PG5 I . n I 1 6 OMY 6 6 6 OMY OMY I . n I 1 7 3FG 7 7 7 3FG PG7 I . n J 1 1 MLU 1 1 1 MLU MLU J . n J 1 2 OMZ 2 2 2 OMZ OMZ J . n J 1 3 ASN 3 3 3 ASN ASN J . n J 1 4 GHP 4 4 4 GHP PG9 J . n J 1 5 GHP 5 5 5 GHP PG5 J . n J 1 6 OMY 6 6 6 OMY OMY J . n J 1 7 3FG 7 7 7 3FG PG7 J . n K 2 1 ACE 1 1 1 ACE AAS K . n K 2 2 DAL 2 2 1 DAL AAS K . n K 2 3 DSN 3 3 1 DSN AAS K . n L 2 1 ACE 1 1 2 ACE AAS L . n L 2 2 DAL 2 2 2 DAL AAS L . n L 2 3 DSN 3 3 2 DSN AAS L . n M 2 1 ACE 1 1 3 ACE AAS M . n M 2 2 DAL 2 2 3 DAL AAS M . n M 2 3 DSN 3 3 3 DSN AAS M . n N 2 1 ACE 1 1 4 ACE AAS N . n N 2 2 DAL 2 2 4 DAL AAS N . n N 2 3 DSN 3 3 4 DSN AAS N . n O 2 1 ACE 1 1 5 ACE AAS O . n O 2 2 DAL 2 2 5 DAL AAS O . n O 2 3 DSN 3 3 5 DSN AAS O . n P 2 1 ACE 1 1 6 ACE AAS P . n P 2 2 DAL 2 2 6 DAL AAS P . n P 2 3 DSN 3 3 6 DSN AAS P . n Q 2 1 ACE 1 1 7 ACE AAS Q . n Q 2 2 DAL 2 2 7 DAL AAS Q . n Q 2 3 DSN 3 3 7 DSN AAS Q . n R 2 1 ACE 1 1 8 ACE AAS R . n R 2 2 DAL 2 2 8 DAL AAS R . n R 2 3 DSN 3 3 8 DSN AAS R . n S 2 1 ACE 1 1 9 ACE AAS S . n S 2 2 DAL 2 2 9 DAL AAS S . n S 2 3 DSN 3 3 9 DSN AAS S . n T 2 1 ACE 1 1 1 ACE AAS T . n T 2 2 DAL 2 2 1 DAL AAS T . n T 2 3 DSN 3 3 1 DSN AAS T . n # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero U 3 BGC 1 U BGC 1 A GLC 8 n U 3 RER 2 U RER 2 A RER 9 n V 3 BGC 1 W BGC 1 B GLC 8 n V 3 RER 2 W RER 2 B RER 9 n W 3 BGC 1 Y BGC 1 C GLC 8 n W 3 RER 2 Y RER 2 C RER 9 n X 3 BGC 1 a BGC 1 D GLC 8 n X 3 RER 2 a RER 2 D RER 9 n Y 3 BGC 1 c BGC 1 E GLC 8 n Y 3 RER 2 c RER 2 E RER 9 n Z 3 BGC 1 e BGC 1 F GLC 8 n Z 3 RER 2 e RER 2 F RER 9 n AA 3 BGC 1 k BGC 1 I GLC 8 n AA 3 RER 2 k RER 2 I RER 9 n BA 3 BGC 1 m BGC 1 J GLC 8 n BA 3 RER 2 m RER 2 J RER 9 n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code CA 4 PGE 1 101 8 PGE PGE A . DA 5 BO3 1 101 3 BO3 BO3 D . EA 6 DMS 1 101 6 DMS DMS G . FA 7 BGC 1 102 8 BGC GLC G . GA 8 RER 1 103 9 RER RER G . HA 6 DMS 1 101 7 DMS DMS H . IA 6 DMS 1 102 4 DMS DMS H . JA 7 BGC 1 103 8 BGC GLC H . KA 8 RER 1 104 9 RER RER H . LA 5 BO3 1 101 2 BO3 BO3 J . MA 6 DMS 1 102 5 DMS DMS J . NA 5 BO3 1 101 1 BO3 BO3 O . OA 9 HOH 1 201 71 HOH HOH A . OA 9 HOH 2 202 62 HOH HOH A . OA 9 HOH 3 203 259 HOH HOH A . OA 9 HOH 4 204 242 HOH HOH A . OA 9 HOH 5 205 199 HOH HOH A . OA 9 HOH 6 206 181 HOH HOH A . OA 9 HOH 7 207 192 HOH HOH A . OA 9 HOH 8 208 140 HOH HOH A . OA 9 HOH 9 209 215 HOH HOH A . OA 9 HOH 10 210 74 HOH HOH A . OA 9 HOH 11 211 240 HOH HOH A . OA 9 HOH 12 212 261 HOH HOH A . OA 9 HOH 13 213 235 HOH HOH A . OA 9 HOH 14 214 196 HOH HOH A . OA 9 HOH 15 215 123 HOH HOH A . OA 9 HOH 16 216 72 HOH HOH A . OA 9 HOH 17 217 68 HOH HOH A . OA 9 HOH 18 218 167 HOH HOH A . OA 9 HOH 19 219 30 HOH HOH A . PA 9 HOH 1 201 223 HOH HOH B . PA 9 HOH 2 202 141 HOH HOH B . PA 9 HOH 3 203 45 HOH HOH B . PA 9 HOH 4 204 99 HOH HOH B . PA 9 HOH 5 205 60 HOH HOH B . PA 9 HOH 6 206 38 HOH HOH B . PA 9 HOH 7 207 36 HOH HOH B . PA 9 HOH 8 208 25 HOH HOH B . PA 9 HOH 9 209 47 HOH HOH B . PA 9 HOH 10 210 239 HOH HOH B . PA 9 HOH 11 211 268 HOH HOH B . PA 9 HOH 12 212 91 HOH HOH B . PA 9 HOH 13 213 50 HOH HOH B . PA 9 HOH 14 214 63 HOH HOH B . PA 9 HOH 15 215 152 HOH HOH B . PA 9 HOH 16 216 100 HOH HOH B . QA 9 HOH 1 201 70 HOH HOH C . QA 9 HOH 2 202 101 HOH HOH C . QA 9 HOH 3 203 122 HOH HOH C . QA 9 HOH 4 204 10 HOH HOH C . QA 9 HOH 5 205 252 HOH HOH C . QA 9 HOH 6 206 138 HOH HOH C . QA 9 HOH 7 207 48 HOH HOH C . QA 9 HOH 8 208 116 HOH HOH C . QA 9 HOH 9 209 51 HOH HOH C . QA 9 HOH 10 210 147 HOH HOH C . QA 9 HOH 11 211 39 HOH HOH C . QA 9 HOH 12 212 81 HOH HOH C . QA 9 HOH 13 213 84 HOH HOH C . QA 9 HOH 14 214 249 HOH HOH C . QA 9 HOH 15 215 94 HOH HOH C . QA 9 HOH 16 216 227 HOH HOH C . QA 9 HOH 17 217 251 HOH HOH C . QA 9 HOH 18 218 15 HOH HOH C . QA 9 HOH 19 219 250 HOH HOH C . QA 9 HOH 20 220 151 HOH HOH C . QA 9 HOH 21 221 222 HOH HOH C . QA 9 HOH 22 222 174 HOH HOH C . QA 9 HOH 23 223 180 HOH HOH C . QA 9 HOH 24 224 98 HOH HOH C . QA 9 HOH 25 225 7 HOH HOH C . QA 9 HOH 26 226 103 HOH HOH C . RA 9 HOH 1 201 263 HOH HOH D . RA 9 HOH 2 202 133 HOH HOH D . RA 9 HOH 3 203 22 HOH HOH D . RA 9 HOH 4 204 49 HOH HOH D . RA 9 HOH 5 205 18 HOH HOH D . RA 9 HOH 6 206 26 HOH HOH D . RA 9 HOH 7 207 88 HOH HOH D . RA 9 HOH 8 208 11 HOH HOH D . RA 9 HOH 9 209 6 HOH HOH D . RA 9 HOH 10 210 165 HOH HOH D . RA 9 HOH 11 211 8 HOH HOH D . RA 9 HOH 12 212 166 HOH HOH D . RA 9 HOH 13 213 262 HOH HOH D . RA 9 HOH 14 214 157 HOH HOH D . RA 9 HOH 15 215 37 HOH HOH D . RA 9 HOH 16 216 135 HOH HOH D . RA 9 HOH 17 217 59 HOH HOH D . RA 9 HOH 18 218 131 HOH HOH D . RA 9 HOH 19 219 253 HOH HOH D . RA 9 HOH 20 220 178 HOH HOH D . RA 9 HOH 21 221 144 HOH HOH D . RA 9 HOH 22 222 46 HOH HOH D . SA 9 HOH 1 201 14 HOH HOH E . SA 9 HOH 2 202 86 HOH HOH E . SA 9 HOH 3 203 78 HOH HOH E . SA 9 HOH 4 204 164 HOH HOH E . SA 9 HOH 5 205 61 HOH HOH E . SA 9 HOH 6 206 79 HOH HOH E . SA 9 HOH 7 207 13 HOH HOH E . SA 9 HOH 8 208 77 HOH HOH E . SA 9 HOH 9 209 35 HOH HOH E . SA 9 HOH 10 210 57 HOH HOH E . SA 9 HOH 11 211 254 HOH HOH E . SA 9 HOH 12 212 231 HOH HOH E . SA 9 HOH 13 213 119 HOH HOH E . SA 9 HOH 14 214 112 HOH HOH E . SA 9 HOH 15 215 161 HOH HOH E . SA 9 HOH 16 216 75 HOH HOH E . SA 9 HOH 17 217 65 HOH HOH E . SA 9 HOH 18 218 92 HOH HOH E . SA 9 HOH 19 219 234 HOH HOH E . SA 9 HOH 20 220 107 HOH HOH E . SA 9 HOH 21 221 216 HOH HOH E . SA 9 HOH 22 222 197 HOH HOH E . SA 9 HOH 23 223 213 HOH HOH E . SA 9 HOH 24 224 42 HOH HOH E . SA 9 HOH 25 225 207 HOH HOH E . TA 9 HOH 1 101 64 HOH HOH F . TA 9 HOH 2 102 28 HOH HOH F . TA 9 HOH 3 103 206 HOH HOH F . TA 9 HOH 4 104 2 HOH HOH F . TA 9 HOH 5 105 143 HOH HOH F . TA 9 HOH 6 106 31 HOH HOH F . TA 9 HOH 7 107 9 HOH HOH F . TA 9 HOH 8 108 162 HOH HOH F . TA 9 HOH 9 109 29 HOH HOH F . TA 9 HOH 10 110 69 HOH HOH F . TA 9 HOH 11 111 73 HOH HOH F . TA 9 HOH 12 112 177 HOH HOH F . TA 9 HOH 13 113 273 HOH HOH F . TA 9 HOH 14 114 229 HOH HOH F . TA 9 HOH 15 115 169 HOH HOH F . TA 9 HOH 16 116 139 HOH HOH F . TA 9 HOH 17 117 220 HOH HOH F . TA 9 HOH 18 118 82 HOH HOH F . TA 9 HOH 19 119 110 HOH HOH F . UA 9 HOH 1 201 232 HOH HOH G . UA 9 HOH 2 202 217 HOH HOH G . UA 9 HOH 3 203 66 HOH HOH G . UA 9 HOH 4 204 54 HOH HOH G . UA 9 HOH 5 205 245 HOH HOH G . UA 9 HOH 6 206 142 HOH HOH G . UA 9 HOH 7 207 187 HOH HOH G . UA 9 HOH 8 208 3 HOH HOH G . UA 9 HOH 9 209 19 HOH HOH G . UA 9 HOH 10 210 20 HOH HOH G . UA 9 HOH 11 211 224 HOH HOH G . UA 9 HOH 12 212 21 HOH HOH G . UA 9 HOH 13 213 238 HOH HOH G . UA 9 HOH 14 214 210 HOH HOH G . UA 9 HOH 15 215 198 HOH HOH G . UA 9 HOH 16 216 146 HOH HOH G . UA 9 HOH 17 217 145 HOH HOH G . UA 9 HOH 18 218 225 HOH HOH G . UA 9 HOH 19 219 153 HOH HOH G . UA 9 HOH 20 220 95 HOH HOH G . UA 9 HOH 21 221 89 HOH HOH G . UA 9 HOH 22 222 5 HOH HOH G . VA 9 HOH 1 201 264 HOH HOH H . VA 9 HOH 2 202 257 HOH HOH H . VA 9 HOH 3 203 93 HOH HOH H . VA 9 HOH 4 204 120 HOH HOH H . VA 9 HOH 5 205 218 HOH HOH H . VA 9 HOH 6 206 12 HOH HOH H . VA 9 HOH 7 207 87 HOH HOH H . VA 9 HOH 8 208 56 HOH HOH H . VA 9 HOH 9 209 102 HOH HOH H . VA 9 HOH 10 210 244 HOH HOH H . VA 9 HOH 11 211 34 HOH HOH H . VA 9 HOH 12 212 258 HOH HOH H . VA 9 HOH 13 213 226 HOH HOH H . VA 9 HOH 14 214 256 HOH HOH H . VA 9 HOH 15 215 171 HOH HOH H . VA 9 HOH 16 216 173 HOH HOH H . VA 9 HOH 17 217 115 HOH HOH H . VA 9 HOH 18 218 148 HOH HOH H . WA 9 HOH 1 201 16 HOH HOH I . WA 9 HOH 2 202 4 HOH HOH I . WA 9 HOH 3 203 137 HOH HOH I . WA 9 HOH 4 204 23 HOH HOH I . WA 9 HOH 5 205 32 HOH HOH I . WA 9 HOH 6 206 106 HOH HOH I . WA 9 HOH 7 207 27 HOH HOH I . WA 9 HOH 8 208 208 HOH HOH I . WA 9 HOH 9 209 163 HOH HOH I . WA 9 HOH 10 210 233 HOH HOH I . WA 9 HOH 11 211 204 HOH HOH I . WA 9 HOH 12 212 243 HOH HOH I . WA 9 HOH 13 213 158 HOH HOH I . XA 9 HOH 1 201 172 HOH HOH J . XA 9 HOH 2 202 186 HOH HOH J . XA 9 HOH 3 203 127 HOH HOH J . XA 9 HOH 4 204 33 HOH HOH J . XA 9 HOH 5 205 189 HOH HOH J . XA 9 HOH 6 206 24 HOH HOH J . XA 9 HOH 7 207 108 HOH HOH J . XA 9 HOH 8 208 104 HOH HOH J . XA 9 HOH 9 209 160 HOH HOH J . XA 9 HOH 10 210 121 HOH HOH J . XA 9 HOH 11 211 230 HOH HOH J . XA 9 HOH 12 212 228 HOH HOH J . XA 9 HOH 13 213 179 HOH HOH J . XA 9 HOH 14 214 132 HOH HOH J . XA 9 HOH 15 215 126 HOH HOH J . XA 9 HOH 16 216 191 HOH HOH J . XA 9 HOH 17 217 124 HOH HOH J . YA 9 HOH 1 101 55 HOH HOH K . YA 9 HOH 2 102 200 HOH HOH K . YA 9 HOH 3 103 134 HOH HOH K . YA 9 HOH 4 104 170 HOH HOH K . YA 9 HOH 5 105 154 HOH HOH K . YA 9 HOH 6 106 212 HOH HOH K . YA 9 HOH 7 107 128 HOH HOH K . ZA 9 HOH 1 101 90 HOH HOH L . ZA 9 HOH 2 102 17 HOH HOH L . ZA 9 HOH 3 103 58 HOH HOH L . ZA 9 HOH 4 104 40 HOH HOH L . ZA 9 HOH 5 105 260 HOH HOH L . ZA 9 HOH 6 106 76 HOH HOH L . AB 9 HOH 1 101 129 HOH HOH M . AB 9 HOH 2 102 1 HOH HOH M . AB 9 HOH 3 103 130 HOH HOH M . AB 9 HOH 4 104 44 HOH HOH M . AB 9 HOH 5 105 155 HOH HOH M . AB 9 HOH 6 106 271 HOH HOH M . AB 9 HOH 7 107 270 HOH HOH M . AB 9 HOH 8 108 183 HOH HOH M . AB 9 HOH 9 109 214 HOH HOH M . AB 9 HOH 10 110 221 HOH HOH M . AB 9 HOH 11 111 194 HOH HOH M . BB 9 HOH 1 101 52 HOH HOH N . BB 9 HOH 2 102 53 HOH HOH N . BB 9 HOH 3 103 176 HOH HOH N . BB 9 HOH 4 104 105 HOH HOH N . BB 9 HOH 5 105 193 HOH HOH N . CB 9 HOH 1 201 205 HOH HOH O . CB 9 HOH 2 202 80 HOH HOH O . CB 9 HOH 3 203 150 HOH HOH O . CB 9 HOH 4 204 201 HOH HOH O . CB 9 HOH 5 205 209 HOH HOH O . CB 9 HOH 6 206 136 HOH HOH O . CB 9 HOH 7 207 182 HOH HOH O . CB 9 HOH 8 208 188 HOH HOH O . DB 9 HOH 1 201 41 HOH HOH P . DB 9 HOH 2 202 97 HOH HOH P . DB 9 HOH 3 203 272 HOH HOH P . DB 9 HOH 4 204 184 HOH HOH P . DB 9 HOH 5 205 202 HOH HOH P . EB 9 HOH 1 101 175 HOH HOH Q . EB 9 HOH 2 102 241 HOH HOH Q . EB 9 HOH 3 103 111 HOH HOH Q . FB 9 HOH 1 101 113 HOH HOH R . FB 9 HOH 2 102 67 HOH HOH R . FB 9 HOH 3 103 117 HOH HOH R . GB 9 HOH 1 101 85 HOH HOH S . GB 9 HOH 2 102 267 HOH HOH S . GB 9 HOH 3 103 265 HOH HOH S . GB 9 HOH 4 104 43 HOH HOH S . GB 9 HOH 5 105 219 HOH HOH S . GB 9 HOH 6 106 83 HOH HOH S . GB 9 HOH 7 107 266 HOH HOH S . GB 9 HOH 8 108 114 HOH HOH S . GB 9 HOH 9 109 118 HOH HOH S . GB 9 HOH 10 110 195 HOH HOH S . HB 9 HOH 1 201 156 HOH HOH T . HB 9 HOH 2 202 125 HOH HOH T . HB 9 HOH 3 203 109 HOH HOH T . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GHP 4 ? O4 ? A GHP 4 O4 2 1 Y 1 B GHP 4 ? O4 ? B GHP 4 O4 3 1 Y 1 C GHP 4 ? O4 ? C GHP 4 O4 4 1 Y 1 D GHP 4 ? O4 ? D GHP 4 O4 5 1 Y 1 E GHP 4 ? O4 ? E GHP 4 O4 6 1 Y 1 F GHP 4 ? O4 ? F GHP 4 O4 7 1 Y 1 G GHP 4 ? O4 ? G GHP 4 O4 8 1 Y 1 H GHP 4 ? O4 ? H GHP 4 O4 9 1 Y 1 I GHP 4 ? O4 ? I GHP 4 O4 10 1 Y 1 J GHP 4 ? O4 ? J GHP 4 O4 # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.20.1_4487 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 4 # _cell.entry_id 8G82 _cell.length_a 30.490 _cell.length_b 71.150 _cell.length_c 82.440 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 40 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8G82 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8G82 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.31 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 62.80 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method MICROBATCH _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '25% PEG 1500, 100 mM MIB buffer pH 6' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 277 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 9M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2021-12-10 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9213360555844542 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'NSLS-II BEAMLINE 17-ID-1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9213360555844542 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 17-ID-1 _diffrn_source.pdbx_synchrotron_site NSLS-II # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 8G82 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 26.540 _reflns.d_resolution_high 1.200 _reflns.number_obs 53037 _reflns.number_all ? _reflns.percent_possible_obs 93.0 _reflns.pdbx_Rmerge_I_obs 0.05600 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 13.4900 _reflns.B_iso_Wilson_estimate 13.59 _reflns.pdbx_redundancy 5.200 _reflns.pdbx_CC_half ? _reflns.pdbx_CC_star ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_Rrim_I_all ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.20 _reflns_shell.d_res_low 1.23 _reflns_shell.percent_possible_all 59.9 _reflns_shell.Rmerge_I_obs 0.66500 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.720 _reflns_shell.pdbx_redundancy 3.06 _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_Rrim_I_all ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 8G82 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 53028 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.350 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 26.53 _refine.ls_d_res_high 1.20 _refine.ls_percent_reflns_obs 93.0 _refine.ls_R_factor_obs 0.154 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.153 _refine.ls_R_factor_R_free 0.171 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 3.770 _refine.ls_number_reflns_R_free 2000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 18.28 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.10 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'GEOSTD + MONOMER LIBRARY + CDL V1.2' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.099 _refine.pdbx_overall_phase_error 17.109 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1010 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 188 _refine_hist.number_atoms_solvent 258 _refine_hist.number_atoms_total 1456 _refine_hist.d_res_high 1.20 _refine_hist.d_res_low 26.53 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.012 ? ? 1295 'X-RAY DIFFRACTION' ? f_angle_d 1.757 ? ? 1802 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 54.602 ? ? 491 'X-RAY DIFFRACTION' ? f_chiral_restr 0.089 ? ? 222 'X-RAY DIFFRACTION' ? f_plane_restr 0.020 ? ? 169 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 1.2000 1.2300 2323 0.2325 60.00 0.2923 . . 91 . . . . 'X-RAY DIFFRACTION' . 1.2300 1.2600 2703 0.2006 70.00 0.2154 . . 106 . . . . 'X-RAY DIFFRACTION' . 1.2600 1.3000 3252 0.1827 84.00 0.2065 . . 128 . . . . 'X-RAY DIFFRACTION' . 1.3000 1.3400 3747 0.1617 97.00 0.2141 . . 146 . . . . 'X-RAY DIFFRACTION' . 1.3400 1.3900 3812 0.1482 99.00 0.1924 . . 150 . . . . 'X-RAY DIFFRACTION' . 1.3900 1.4500 3876 0.1322 100.00 0.1602 . . 152 . . . . 'X-RAY DIFFRACTION' . 1.4500 1.5100 3845 0.1322 99.00 0.1681 . . 150 . . . . 'X-RAY DIFFRACTION' . 1.5100 1.5900 3866 0.1235 99.00 0.1858 . . 152 . . . . 'X-RAY DIFFRACTION' . 1.5900 1.6900 3897 0.1267 99.00 0.1537 . . 153 . . . . 'X-RAY DIFFRACTION' . 1.6900 1.8200 3872 0.1357 99.00 0.1937 . . 152 . . . . 'X-RAY DIFFRACTION' . 1.8200 2.0100 3912 0.1355 100.00 0.1536 . . 152 . . . . 'X-RAY DIFFRACTION' . 2.0100 2.3000 3925 0.1427 99.00 0.1519 . . 154 . . . . 'X-RAY DIFFRACTION' . 2.3000 2.8900 3943 0.1636 99.00 0.1855 . . 156 . . . . 'X-RAY DIFFRACTION' . 2.8900 26.5300 4055 0.1661 97.00 0.1603 . . 158 . . . . # _struct.entry_id 8G82 _struct.title 'Vancomycin bound to D-Ala-D-Ser' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8G82 _struct_keywords.text 'Antibiotic resistance, ANTIBIOTIC' _struct_keywords.pdbx_keywords ANTIBIOTIC # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 1 ? H N N 1 ? I N N 1 ? J N N 1 ? K N N 2 ? L N N 2 ? M N N 2 ? N N N 2 ? O N N 2 ? P N N 2 ? Q N N 2 ? R N N 2 ? S N N 2 ? T N N 2 ? U N N 3 ? V N N 3 ? W N N 3 ? X N N 3 ? Y N N 3 ? Z N N 3 ? AA N N 3 ? BA N N 3 ? CA N N 4 ? DA N N 5 ? EA N N 6 ? FA N N 7 ? GA N N 8 ? HA N N 6 ? IA N N 6 ? JA N N 7 ? KA N N 8 ? LA N N 5 ? MA N N 6 ? NA N N 5 ? OA N N 9 ? PA N N 9 ? QA N N 9 ? RA N N 9 ? SA N N 9 ? TA N N 9 ? UA N N 9 ? VA N N 9 ? WA N N 9 ? XA N N 9 ? YA N N 9 ? ZA N N 9 ? AB N N 9 ? BB N N 9 ? CB N N 9 ? DB N N 9 ? EB N N 9 ? FB N N 9 ? GB N N 9 ? HB N N 9 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 8G82 8G82 ? 1 ? 1 2 PDB 8G82 8G82 ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8G82 A 1 ? 7 ? 8G82 1 ? 7 ? 1 7 2 1 8G82 B 1 ? 7 ? 8G82 1 ? 7 ? 1 7 3 1 8G82 C 1 ? 7 ? 8G82 1 ? 7 ? 1 7 4 1 8G82 D 1 ? 7 ? 8G82 1 ? 7 ? 1 7 5 1 8G82 E 1 ? 7 ? 8G82 1 ? 7 ? 1 7 6 1 8G82 F 1 ? 7 ? 8G82 1 ? 7 ? 1 7 7 1 8G82 G 1 ? 7 ? 8G82 1 ? 7 ? 1 7 8 1 8G82 H 1 ? 7 ? 8G82 1 ? 7 ? 1 7 9 1 8G82 I 1 ? 7 ? 8G82 1 ? 7 ? 1 7 10 1 8G82 J 1 ? 7 ? 8G82 1 ? 7 ? 1 7 11 2 8G82 K 1 ? 3 ? 8G82 1 ? 3 ? 1 3 12 2 8G82 L 1 ? 3 ? 8G82 1 ? 3 ? 1 3 13 2 8G82 M 1 ? 3 ? 8G82 1 ? 3 ? 1 3 14 2 8G82 N 1 ? 3 ? 8G82 1 ? 3 ? 1 3 15 2 8G82 O 1 ? 3 ? 8G82 1 ? 3 ? 1 3 16 2 8G82 P 1 ? 3 ? 8G82 1 ? 3 ? 1 3 17 2 8G82 Q 1 ? 3 ? 8G82 1 ? 3 ? 1 3 18 2 8G82 R 1 ? 3 ? 8G82 1 ? 3 ? 1 3 19 2 8G82 S 1 ? 3 ? 8G82 1 ? 3 ? 1 3 20 2 8G82 T 1 ? 3 ? 8G82 1 ? 3 ? 1 3 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? tetrameric 4 2 author_defined_assembly ? tetrameric 4 3 author_defined_assembly ? tetrameric 4 4 author_defined_assembly ? tetrameric 4 5 author_defined_assembly ? tetrameric 4 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,K,L,U,V,CA,OA,PA,YA,ZA 2 1 C,D,M,N,W,X,DA,QA,RA,AB,BB 3 1 E,F,O,P,Y,Z,NA,SA,TA,CB,DB 4 1 G,H,Q,R,EA,FA,GA,HA,IA,JA,KA,UA,VA,EB,FB 5 1 I,J,S,T,AA,BA,LA,MA,WA,XA,GB,HB # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A MLU 1 C ? ? ? 1_555 A OMZ 2 N ? ? A MLU 1 A OMZ 2 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale2 covale both ? A OMZ 2 C ? ? ? 1_555 A ASN 3 N ? ? A OMZ 2 A ASN 3 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale3 covale none ? A OMZ 2 OH ? ? ? 1_555 A GHP 4 C5 ? ? A OMZ 2 A GHP 4 1_555 ? ? ? ? ? ? ? 1.405 ? ? covale4 covale both ? A ASN 3 C ? ? ? 1_555 A GHP 4 N ? ? A ASN 3 A GHP 4 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale5 covale both ? A GHP 4 C ? ? ? 1_555 A GHP 5 N ? ? A GHP 4 A GHP 5 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale6 covale none ? A GHP 4 C3 ? ? ? 1_555 A OMY 6 OCZ ? ? A GHP 4 A OMY 6 1_555 ? ? ? ? ? ? ? 1.400 ? ? covale7 covale both ? A GHP 5 C ? ? ? 1_555 A OMY 6 N ? ? A GHP 5 A OMY 6 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale8 covale one ? A GHP 5 C3 ? ? ? 1_555 A 3FG 7 CG1 ? ? A GHP 5 A 3FG 7 1_555 ? ? ? ? ? ? ? 1.429 ? ? covale9 covale both ? A OMY 6 C ? ? ? 1_555 A 3FG 7 N ? ? A OMY 6 A 3FG 7 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale10 covale both ? B MLU 1 C ? ? ? 1_555 B OMZ 2 N ? ? B MLU 1 B OMZ 2 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale11 covale both ? B OMZ 2 C ? ? ? 1_555 B ASN 3 N ? ? B OMZ 2 B ASN 3 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale12 covale none ? B OMZ 2 OH ? ? ? 1_555 B GHP 4 C5 ? ? B OMZ 2 B GHP 4 1_555 ? ? ? ? ? ? ? 1.397 ? ? covale13 covale both ? B ASN 3 C ? ? ? 1_555 B GHP 4 N ? ? B ASN 3 B GHP 4 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale14 covale both ? B GHP 4 C ? ? ? 1_555 B GHP 5 N ? ? B GHP 4 B GHP 5 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale15 covale none ? B GHP 4 C3 ? ? ? 1_555 B OMY 6 OCZ ? ? B GHP 4 B OMY 6 1_555 ? ? ? ? ? ? ? 1.403 ? ? covale16 covale both ? B GHP 5 C ? ? ? 1_555 B OMY 6 N ? ? B GHP 5 B OMY 6 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale17 covale one ? B GHP 5 C3 ? ? ? 1_555 B 3FG 7 CG1 ? ? B GHP 5 B 3FG 7 1_555 ? ? ? ? ? ? ? 1.441 ? ? covale18 covale both ? B OMY 6 C ? ? ? 1_555 B 3FG 7 N ? ? B OMY 6 B 3FG 7 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale19 covale both ? C MLU 1 C ? ? ? 1_555 C OMZ 2 N ? ? C MLU 1 C OMZ 2 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale20 covale both ? C OMZ 2 C ? ? ? 1_555 C ASN 3 N ? ? C OMZ 2 C ASN 3 1_555 ? ? ? ? ? ? ? 1.343 ? ? covale21 covale none ? C OMZ 2 OH ? ? ? 1_555 C GHP 4 C5 ? ? C OMZ 2 C GHP 4 1_555 ? ? ? ? ? ? ? 1.392 ? ? covale22 covale both ? C ASN 3 C ? ? ? 1_555 C GHP 4 N ? ? C ASN 3 C GHP 4 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale23 covale both ? C GHP 4 C ? ? ? 1_555 C GHP 5 N ? ? C GHP 4 C GHP 5 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale24 covale none ? C GHP 4 C3 ? ? ? 1_555 C OMY 6 OCZ ? ? C GHP 4 C OMY 6 1_555 ? ? ? ? ? ? ? 1.413 ? ? covale25 covale both ? C GHP 5 C ? ? ? 1_555 C OMY 6 N ? ? C GHP 5 C OMY 6 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale26 covale one ? C GHP 5 C3 ? ? ? 1_555 C 3FG 7 CG1 ? ? C GHP 5 C 3FG 7 1_555 ? ? ? ? ? ? ? 1.440 ? ? covale27 covale both ? C OMY 6 C ? ? ? 1_555 C 3FG 7 N ? ? C OMY 6 C 3FG 7 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale28 covale both ? D MLU 1 C ? ? ? 1_555 D OMZ 2 N ? ? D MLU 1 D OMZ 2 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale29 covale both ? D OMZ 2 C ? ? ? 1_555 D ASN 3 N ? ? D OMZ 2 D ASN 3 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale30 covale none ? D OMZ 2 OH ? ? ? 1_555 D GHP 4 C5 ? ? D OMZ 2 D GHP 4 1_555 ? ? ? ? ? ? ? 1.403 ? ? covale31 covale both ? D ASN 3 C ? ? ? 1_555 D GHP 4 N ? ? D ASN 3 D GHP 4 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale32 covale both ? D GHP 4 C ? ? ? 1_555 D GHP 5 N ? ? D GHP 4 D GHP 5 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale33 covale none ? D GHP 4 C3 ? ? ? 1_555 D OMY 6 OCZ ? ? D GHP 4 D OMY 6 1_555 ? ? ? ? ? ? ? 1.400 ? ? covale34 covale both ? D GHP 5 C ? ? ? 1_555 D OMY 6 N ? ? D GHP 5 D OMY 6 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale35 covale one ? D GHP 5 C3 ? ? ? 1_555 D 3FG 7 CG1 ? ? D GHP 5 D 3FG 7 1_555 ? ? ? ? ? ? ? 1.445 ? ? covale36 covale both ? D OMY 6 C ? ? ? 1_555 D 3FG 7 N ? ? D OMY 6 D 3FG 7 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale37 covale both ? E MLU 1 C ? ? ? 1_555 E OMZ 2 N ? ? E MLU 1 E OMZ 2 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale38 covale both ? E OMZ 2 C ? ? ? 1_555 E ASN 3 N ? ? E OMZ 2 E ASN 3 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale39 covale none ? E OMZ 2 OH ? ? ? 1_555 E GHP 4 C5 ? ? E OMZ 2 E GHP 4 1_555 ? ? ? ? ? ? ? 1.406 ? ? covale40 covale both ? E ASN 3 C ? ? ? 1_555 E GHP 4 N ? ? E ASN 3 E GHP 4 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale41 covale both ? E GHP 4 C ? ? ? 1_555 E GHP 5 N ? ? E GHP 4 E GHP 5 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale42 covale none ? E GHP 4 C3 ? ? ? 1_555 E OMY 6 OCZ ? ? E GHP 4 E OMY 6 1_555 ? ? ? ? ? ? ? 1.411 ? ? covale43 covale both ? E GHP 5 C ? ? ? 1_555 E OMY 6 N ? ? E GHP 5 E OMY 6 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale44 covale one ? E GHP 5 C3 ? ? ? 1_555 E 3FG 7 CG1 ? ? E GHP 5 E 3FG 7 1_555 ? ? ? ? ? ? ? 1.441 ? ? covale45 covale both ? E OMY 6 C ? ? ? 1_555 E 3FG 7 N ? ? E OMY 6 E 3FG 7 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale46 covale both ? F MLU 1 C ? ? ? 1_555 F OMZ 2 N ? ? F MLU 1 F OMZ 2 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale47 covale both ? F OMZ 2 C ? ? ? 1_555 F ASN 3 N ? ? F OMZ 2 F ASN 3 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale48 covale none ? F OMZ 2 OH ? ? ? 1_555 F GHP 4 C5 ? ? F OMZ 2 F GHP 4 1_555 ? ? ? ? ? ? ? 1.391 ? ? covale49 covale both ? F ASN 3 C ? ? ? 1_555 F GHP 4 N ? ? F ASN 3 F GHP 4 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale50 covale both ? F GHP 4 C ? ? ? 1_555 F GHP 5 N ? ? F GHP 4 F GHP 5 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale51 covale none ? F GHP 4 C3 ? ? ? 1_555 F OMY 6 OCZ ? ? F GHP 4 F OMY 6 1_555 ? ? ? ? ? ? ? 1.399 ? ? covale52 covale both ? F GHP 5 C ? ? ? 1_555 F OMY 6 N ? ? F GHP 5 F OMY 6 1_555 ? ? ? ? ? ? ? 1.344 ? ? covale53 covale one ? F GHP 5 C3 ? ? ? 1_555 F 3FG 7 CG1 ? ? F GHP 5 F 3FG 7 1_555 ? ? ? ? ? ? ? 1.443 ? ? covale54 covale both ? F OMY 6 C ? ? ? 1_555 F 3FG 7 N ? ? F OMY 6 F 3FG 7 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale55 covale both ? G MLU 1 C ? ? ? 1_555 G OMZ 2 N ? ? G MLU 1 G OMZ 2 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale56 covale both ? G OMZ 2 C ? ? ? 1_555 G ASN 3 N ? ? G OMZ 2 G ASN 3 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale57 covale none ? G OMZ 2 OH ? ? ? 1_555 G GHP 4 C5 ? ? G OMZ 2 G GHP 4 1_555 ? ? ? ? ? ? ? 1.400 ? ? covale58 covale both ? G ASN 3 C ? ? ? 1_555 G GHP 4 N ? ? G ASN 3 G GHP 4 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale59 covale both ? G GHP 4 C ? ? ? 1_555 G GHP 5 N ? ? G GHP 4 G GHP 5 1_555 ? ? ? ? ? ? ? 1.318 ? ? covale60 covale none ? G GHP 4 C3 ? ? ? 1_555 G OMY 6 OCZ ? ? G GHP 4 G OMY 6 1_555 ? ? ? ? ? ? ? 1.397 ? ? covale61 covale both ? G GHP 5 C ? ? ? 1_555 G OMY 6 N ? ? G GHP 5 G OMY 6 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale62 covale one ? G GHP 5 C3 ? ? ? 1_555 G 3FG 7 CG1 ? ? G GHP 5 G 3FG 7 1_555 ? ? ? ? ? ? ? 1.446 ? ? covale63 covale both ? G OMY 6 C ? ? ? 1_555 G 3FG 7 N ? ? G OMY 6 G 3FG 7 1_555 ? ? ? ? ? ? ? 1.317 ? ? covale64 covale both ? FA BGC . O2 A ? ? 1_555 GA RER . C1 A ? G BGC 102 G RER 103 1_555 ? ? ? ? ? ? ? 1.429 ? ? covale65 covale both ? FA BGC . O2 B ? ? 1_555 GA RER . C1 B ? G BGC 102 G RER 103 1_555 ? ? ? ? ? ? ? 1.429 ? ? covale66 covale both ? H MLU 1 C ? ? ? 1_555 H OMZ 2 N ? ? H MLU 1 H OMZ 2 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale67 covale both ? H OMZ 2 C ? ? ? 1_555 H ASN 3 N ? ? H OMZ 2 H ASN 3 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale68 covale none ? H OMZ 2 OH ? ? ? 1_555 H GHP 4 C5 ? ? H OMZ 2 H GHP 4 1_555 ? ? ? ? ? ? ? 1.407 ? ? covale69 covale both ? H ASN 3 C ? ? ? 1_555 H GHP 4 N ? ? H ASN 3 H GHP 4 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale70 covale both ? H GHP 4 C ? ? ? 1_555 H GHP 5 N ? ? H GHP 4 H GHP 5 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale71 covale none ? H GHP 4 C3 ? ? ? 1_555 H OMY 6 OCZ ? ? H GHP 4 H OMY 6 1_555 ? ? ? ? ? ? ? 1.395 ? ? covale72 covale both ? H GHP 5 C ? ? ? 1_555 H OMY 6 N ? ? H GHP 5 H OMY 6 1_555 ? ? ? ? ? ? ? 1.343 ? ? covale73 covale one ? H GHP 5 C3 ? ? ? 1_555 H 3FG 7 CG1 ? ? H GHP 5 H 3FG 7 1_555 ? ? ? ? ? ? ? 1.437 ? ? covale74 covale both ? H OMY 6 C ? ? ? 1_555 H 3FG 7 N ? ? H OMY 6 H 3FG 7 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale75 covale both ? JA BGC . O2 A ? ? 1_555 KA RER . C1 A ? H BGC 103 H RER 104 1_555 ? ? ? ? ? ? ? 1.428 ? ? covale76 covale both ? JA BGC . O2 B ? ? 1_555 KA RER . C1 B ? H BGC 103 H RER 104 1_555 ? ? ? ? ? ? ? 1.434 ? ? covale77 covale both ? I MLU 1 C ? ? ? 1_555 I OMZ 2 N ? ? I MLU 1 I OMZ 2 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale78 covale both ? I OMZ 2 C ? ? ? 1_555 I ASN 3 N ? ? I OMZ 2 I ASN 3 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale79 covale none ? I OMZ 2 OH ? ? ? 1_555 I GHP 4 C5 ? ? I OMZ 2 I GHP 4 1_555 ? ? ? ? ? ? ? 1.392 ? ? covale80 covale both ? I ASN 3 C ? ? ? 1_555 I GHP 4 N ? ? I ASN 3 I GHP 4 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale81 covale both ? I GHP 4 C ? ? ? 1_555 I GHP 5 N ? ? I GHP 4 I GHP 5 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale82 covale none ? I GHP 4 C3 ? ? ? 1_555 I OMY 6 OCZ ? ? I GHP 4 I OMY 6 1_555 ? ? ? ? ? ? ? 1.402 ? ? covale83 covale both ? I GHP 5 C ? ? ? 1_555 I OMY 6 N ? ? I GHP 5 I OMY 6 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale84 covale one ? I GHP 5 C3 ? ? ? 1_555 I 3FG 7 CG1 ? ? I GHP 5 I 3FG 7 1_555 ? ? ? ? ? ? ? 1.438 ? ? covale85 covale both ? I OMY 6 C ? ? ? 1_555 I 3FG 7 N ? ? I OMY 6 I 3FG 7 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale86 covale both ? J MLU 1 C ? ? ? 1_555 J OMZ 2 N ? ? J MLU 1 J OMZ 2 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale87 covale both ? J OMZ 2 C ? ? ? 1_555 J ASN 3 N ? ? J OMZ 2 J ASN 3 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale88 covale none ? J OMZ 2 OH ? ? ? 1_555 J GHP 4 C5 ? ? J OMZ 2 J GHP 4 1_555 ? ? ? ? ? ? ? 1.395 ? ? covale89 covale both ? J ASN 3 C ? ? ? 1_555 J GHP 4 N ? ? J ASN 3 J GHP 4 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale90 covale both ? J GHP 4 C ? ? ? 1_555 J GHP 5 N ? ? J GHP 4 J GHP 5 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale91 covale none ? J GHP 4 C3 ? ? ? 1_555 J OMY 6 OCZ ? ? J GHP 4 J OMY 6 1_555 ? ? ? ? ? ? ? 1.399 ? ? covale92 covale both ? J GHP 5 C ? ? ? 1_555 J OMY 6 N ? ? J GHP 5 J OMY 6 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale93 covale one ? J GHP 5 C3 ? ? ? 1_555 J 3FG 7 CG1 ? ? J GHP 5 J 3FG 7 1_555 ? ? ? ? ? ? ? 1.419 ? ? covale94 covale both ? J OMY 6 C ? ? ? 1_555 J 3FG 7 N ? ? J OMY 6 J 3FG 7 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale95 covale both ? K ACE 1 C ? ? ? 1_555 K DAL 2 N ? ? K ACE 1 K DAL 2 1_555 ? ? ? ? ? ? ? 1.433 ? ? covale96 covale both ? K DAL 2 C ? ? ? 1_555 K DSN 3 N ? ? K DAL 2 K DSN 3 1_555 ? ? ? ? ? ? ? 1.417 ? ? covale97 covale both ? L ACE 1 C A ? ? 1_555 L DAL 2 N A ? L ACE 1 L DAL 2 1_555 ? ? ? ? ? ? ? 1.424 ? ? covale98 covale both ? L ACE 1 C B ? ? 1_555 L DAL 2 N B ? L ACE 1 L DAL 2 1_555 ? ? ? ? ? ? ? 1.440 ? ? covale99 covale both ? L DAL 2 C A ? ? 1_555 L DSN 3 N A ? L DAL 2 L DSN 3 1_555 ? ? ? ? ? ? ? 1.413 ? ? covale100 covale both ? L DAL 2 C B ? ? 1_555 L DSN 3 N B ? L DAL 2 L DSN 3 1_555 ? ? ? ? ? ? ? 1.436 ? ? covale101 covale both ? M ACE 1 C ? ? ? 1_555 M DAL 2 N ? ? M ACE 1 M DAL 2 1_555 ? ? ? ? ? ? ? 1.434 ? ? covale102 covale both ? M DAL 2 C ? ? ? 1_555 M DSN 3 N ? ? M DAL 2 M DSN 3 1_555 ? ? ? ? ? ? ? 1.434 ? ? covale103 covale both ? N ACE 1 C ? ? ? 1_555 N DAL 2 N ? ? N ACE 1 N DAL 2 1_555 ? ? ? ? ? ? ? 1.414 ? ? covale104 covale both ? N DAL 2 C ? ? ? 1_555 N DSN 3 N ? ? N DAL 2 N DSN 3 1_555 ? ? ? ? ? ? ? 1.408 ? ? covale105 covale both ? O ACE 1 C ? ? ? 1_555 O DAL 2 N ? ? O ACE 1 O DAL 2 1_555 ? ? ? ? ? ? ? 1.424 ? ? covale106 covale both ? O DAL 2 C ? ? ? 1_555 O DSN 3 N ? ? O DAL 2 O DSN 3 1_555 ? ? ? ? ? ? ? 1.428 ? ? covale107 covale both ? P ACE 1 C ? ? ? 1_555 P DAL 2 N ? ? P ACE 1 P DAL 2 1_555 ? ? ? ? ? ? ? 1.420 ? ? covale108 covale both ? P DAL 2 C ? ? ? 1_555 P DSN 3 N ? ? P DAL 2 P DSN 3 1_555 ? ? ? ? ? ? ? 1.402 ? ? covale109 covale both ? Q ACE 1 C ? ? ? 1_555 Q DAL 2 N ? ? Q ACE 1 Q DAL 2 1_555 ? ? ? ? ? ? ? 1.411 ? ? covale110 covale both ? Q DAL 2 C ? ? ? 1_555 Q DSN 3 N ? ? Q DAL 2 Q DSN 3 1_555 ? ? ? ? ? ? ? 1.403 ? ? covale111 covale both ? R ACE 1 C ? ? ? 1_555 R DAL 2 N ? ? R ACE 1 R DAL 2 1_555 ? ? ? ? ? ? ? 1.412 ? ? covale112 covale both ? R DAL 2 C ? ? ? 1_555 R DSN 3 N ? ? R DAL 2 R DSN 3 1_555 ? ? ? ? ? ? ? 1.399 ? ? covale113 covale both ? S ACE 1 C A ? ? 1_555 S DAL 2 N A ? S ACE 1 S DAL 2 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale114 covale both ? S ACE 1 C B ? ? 1_555 S DAL 2 N B ? S ACE 1 S DAL 2 1_555 ? ? ? ? ? ? ? 1.431 ? ? covale115 covale both ? S DAL 2 C A ? ? 1_555 S DSN 3 N A ? S DAL 2 S DSN 3 1_555 ? ? ? ? ? ? ? 1.428 ? ? covale116 covale both ? S DAL 2 C B ? ? 1_555 S DSN 3 N B ? S DAL 2 S DSN 3 1_555 ? ? ? ? ? ? ? 1.432 ? ? covale117 covale both ? T ACE 1 C ? ? ? 1_555 T DAL 2 N ? ? T ACE 1 T DAL 2 1_555 ? ? ? ? ? ? ? 1.445 ? ? covale118 covale both ? T DAL 2 C ? ? ? 1_555 T DSN 3 N ? ? T DAL 2 T DSN 3 1_555 ? ? ? ? ? ? ? 1.424 ? ? covale119 covale both ? U BGC . O2 ? ? ? 1_555 U RER . C1 ? ? U BGC 1 U RER 2 1_555 ? ? ? ? ? ? ? 1.433 ? ? covale120 covale both ? V BGC . O2 ? ? ? 1_555 V RER . C1 ? ? W BGC 1 W RER 2 1_555 ? ? ? ? ? ? ? 1.432 ? ? covale121 covale both ? W BGC . O2 ? ? ? 1_555 W RER . C1 ? ? Y BGC 1 Y RER 2 1_555 ? ? ? ? ? ? ? 1.428 ? ? covale122 covale both ? X BGC . O2 ? ? ? 1_555 X RER . C1 ? ? a BGC 1 a RER 2 1_555 ? ? ? ? ? ? ? 1.426 ? ? covale123 covale both ? Y BGC . O2 ? ? ? 1_555 Y RER . C1 ? ? c BGC 1 c RER 2 1_555 ? ? ? ? ? ? ? 1.435 ? ? covale124 covale both ? Z BGC . O2 ? ? ? 1_555 Z RER . C1 ? ? e BGC 1 e RER 2 1_555 ? ? ? ? ? ? ? 1.434 ? ? covale125 covale both ? AA BGC . O2 ? ? ? 1_555 AA RER . C1 ? ? k BGC 1 k RER 2 1_555 ? ? ? ? ? ? ? 1.435 ? ? covale126 covale both ? BA BGC . O2 ? ? ? 1_555 BA RER . C1 ? ? m BGC 1 m RER 2 1_555 ? ? ? ? ? ? ? 1.431 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GHP 5 A . ? GHP 5 A OMY 6 A ? OMY 6 A 1 11.93 2 GHP 5 B . ? GHP 5 B OMY 6 B ? OMY 6 B 1 1.70 3 GHP 5 C . ? GHP 5 C OMY 6 C ? OMY 6 C 1 13.51 4 GHP 5 D . ? GHP 5 D OMY 6 D ? OMY 6 D 1 10.02 5 GHP 5 E . ? GHP 5 E OMY 6 E ? OMY 6 E 1 8.82 6 GHP 5 F . ? GHP 5 F OMY 6 F ? OMY 6 F 1 11.72 7 GHP 5 G . ? GHP 5 G OMY 6 G ? OMY 6 G 1 2.98 8 GHP 5 H . ? GHP 5 H OMY 6 H ? OMY 6 H 1 4.77 9 GHP 5 I . ? GHP 5 I OMY 6 I ? OMY 6 I 1 2.18 10 GHP 5 J . ? GHP 5 J OMY 6 J ? OMY 6 J 1 10.23 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 C4 C GHP 4 ? ? O1 Y BGC 1 ? ? 1.42 2 1 C4 F GHP 4 ? ? O1 e BGC 1 ? ? 1.42 3 1 C4 D GHP 4 ? ? O1 a BGC 1 ? ? 1.42 4 1 C4 E GHP 4 ? ? O1 c BGC 1 ? ? 1.42 5 1 C4 G GHP 4 ? ? O1 G BGC 102 ? B 1.42 6 1 C4 A GHP 4 ? ? O1 U BGC 1 ? ? 1.42 7 1 C4 I GHP 4 ? ? O1 k BGC 1 ? ? 1.42 8 1 C4 B GHP 4 ? ? O1 W BGC 1 ? ? 1.42 9 1 C4 H GHP 4 ? ? O1 H BGC 103 ? B 1.42 10 1 C4 J GHP 4 ? ? O1 m BGC 1 ? ? 1.42 11 1 C4 H GHP 4 ? ? O1 H BGC 103 ? A 1.43 12 1 C4 G GHP 4 ? ? O1 G BGC 102 ? A 1.43 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN D 3 ? ? -124.13 -54.18 2 1 ASN F 3 ? ? -123.28 -51.94 # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 x+1/2,-y+1/2,-z 3 -x,y+1/2,-z+1/2 4 -x+1/2,-y,z+1/2 # _pdbx_entry_details.entry_id 8G82 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ;VANCOMYCIN IS A TRICYCLIC GLYCOPEPTIDE. THE SCAFFOLD IS A HEPTAPEPTIDE WITH THE CONFIGURATION D-D-L-D-D-L-L. IT IS FURTHER GLYCOSYLATED BY A DISACCHARIDE MADE OF D-GLUCOSE AND VANCOSAMINE. HERE, VANCOMYCIN IS REPRESENTED BY GROUPING TOUGHER THE SEQUENCE (SEQRES) AND THE TWO LIGANDS (HET) BGC AND RER. ; _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 3FG N N N N 1 3FG OD1 O N N 2 3FG CD1 C Y N 3 3FG CG1 C Y N 4 3FG CZ C Y N 5 3FG CD2 C Y N 6 3FG OD2 O N N 7 3FG CG2 C Y N 8 3FG CB C Y N 9 3FG CA C N S 10 3FG C C N N 11 3FG O O N N 12 3FG OXT O N N 13 3FG H H N N 14 3FG H2 H N N 15 3FG HA H N N 16 3FG HD1 H N N 17 3FG HG1 H N N 18 3FG HZ H N N 19 3FG HD2 H N N 20 3FG HG2 H N N 21 3FG HXT H N N 22 ACE C C N N 23 ACE O O N N 24 ACE CH3 C N N 25 ACE H H N N 26 ACE H1 H N N 27 ACE H2 H N N 28 ACE H3 H N N 29 ASN N N N N 30 ASN CA C N S 31 ASN C C N N 32 ASN O O N N 33 ASN CB C N N 34 ASN CG C N N 35 ASN OD1 O N N 36 ASN ND2 N N N 37 ASN OXT O N N 38 ASN H H N N 39 ASN H2 H N N 40 ASN HA H N N 41 ASN HB2 H N N 42 ASN HB3 H N N 43 ASN HD21 H N N 44 ASN HD22 H N N 45 ASN HXT H N N 46 BGC C2 C N R 47 BGC C3 C N S 48 BGC C4 C N S 49 BGC C5 C N R 50 BGC C6 C N N 51 BGC C1 C N R 52 BGC O1 O N N 53 BGC O2 O N N 54 BGC O3 O N N 55 BGC O4 O N N 56 BGC O5 O N N 57 BGC O6 O N N 58 BGC H2 H N N 59 BGC H3 H N N 60 BGC H4 H N N 61 BGC H5 H N N 62 BGC H61 H N N 63 BGC H62 H N N 64 BGC H1 H N N 65 BGC HO1 H N N 66 BGC HO2 H N N 67 BGC HO3 H N N 68 BGC HO4 H N N 69 BGC HO6 H N N 70 BO3 B B N N 71 BO3 O1 O N N 72 BO3 O2 O N N 73 BO3 O3 O N N 74 BO3 HO1 H N N 75 BO3 HO2 H N N 76 BO3 HO3 H N N 77 DAL N N N N 78 DAL CA C N R 79 DAL CB C N N 80 DAL C C N N 81 DAL O O N N 82 DAL OXT O N N 83 DAL H H N N 84 DAL H2 H N N 85 DAL HA H N N 86 DAL HB1 H N N 87 DAL HB2 H N N 88 DAL HB3 H N N 89 DAL HXT H N N 90 DMS S S N N 91 DMS O O N N 92 DMS C1 C N N 93 DMS C2 C N N 94 DMS H11 H N N 95 DMS H12 H N N 96 DMS H13 H N N 97 DMS H21 H N N 98 DMS H22 H N N 99 DMS H23 H N N 100 DSN N N N N 101 DSN CA C N R 102 DSN C C N N 103 DSN O O N N 104 DSN OXT O N N 105 DSN CB C N N 106 DSN OG O N N 107 DSN H H N N 108 DSN H2 H N N 109 DSN HA H N N 110 DSN HXT H N N 111 DSN HB2 H N N 112 DSN HB3 H N N 113 DSN HG H N N 114 GHP N N N N 115 GHP CA C N R 116 GHP C C N N 117 GHP O O N N 118 GHP OXT O N N 119 GHP C1 C Y N 120 GHP C2 C Y N 121 GHP C3 C Y N 122 GHP C4 C Y N 123 GHP O4 O N N 124 GHP C5 C Y N 125 GHP C6 C Y N 126 GHP H H N N 127 GHP H2 H N N 128 GHP HA H N N 129 GHP HXT H N N 130 GHP HC2 H N N 131 GHP H3 H N N 132 GHP HO4 H N N 133 GHP H5 H N N 134 GHP H6 H N N 135 HOH O O N N 136 HOH H1 H N N 137 HOH H2 H N N 138 MLU N N N N 139 MLU CN C N N 140 MLU CA C N R 141 MLU C C N N 142 MLU O O N N 143 MLU CB C N N 144 MLU CG C N N 145 MLU CD1 C N N 146 MLU CD2 C N N 147 MLU OXT O N N 148 MLU H H N N 149 MLU HCN1 H N N 150 MLU HCN2 H N N 151 MLU HCN3 H N N 152 MLU HA H N N 153 MLU HB2 H N N 154 MLU HB3 H N N 155 MLU HXT H N N 156 MLU HG H N N 157 MLU HD11 H N N 158 MLU HD12 H N N 159 MLU HD13 H N N 160 MLU HD21 H N N 161 MLU HD22 H N N 162 MLU HD23 H N N 163 OMY N N N N 164 OMY CA C N S 165 OMY OCZ O N N 166 OMY CE2 C Y N 167 OMY CE1 C Y N 168 OMY CZ C Y N 169 OMY CG C Y N 170 OMY CD2 C Y N 171 OMY CD1 C Y N 172 OMY CB C N R 173 OMY CL CL N N 174 OMY O O N N 175 OMY C C N N 176 OMY ODE O N N 177 OMY OXT O N N 178 OMY H H N N 179 OMY H2 H N N 180 OMY HA H N N 181 OMY HCZ H N N 182 OMY HE2 H N N 183 OMY HD2 H N N 184 OMY HD1 H N N 185 OMY HB H N N 186 OMY HXT H N N 187 OMY HDE H N N 188 OMZ N N N N 189 OMZ CA C N R 190 OMZ C C N N 191 OMZ O O N N 192 OMZ OXT O N N 193 OMZ CB C N R 194 OMZ OC O N N 195 OMZ CG C Y N 196 OMZ CD1 C Y N 197 OMZ CD2 C Y N 198 OMZ CE1 C Y N 199 OMZ CL CL N N 200 OMZ CE2 C Y N 201 OMZ CZ C Y N 202 OMZ OH O N N 203 OMZ H H N N 204 OMZ H2 H N N 205 OMZ HA H N N 206 OMZ HB H N N 207 OMZ HXT H N N 208 OMZ HC H N N 209 OMZ HD1 H N N 210 OMZ HD2 H N N 211 OMZ HE2 H N N 212 OMZ HH H N N 213 PGE C1 C N N 214 PGE O1 O N N 215 PGE C2 C N N 216 PGE O2 O N N 217 PGE C3 C N N 218 PGE C4 C N N 219 PGE O4 O N N 220 PGE C6 C N N 221 PGE C5 C N N 222 PGE O3 O N N 223 PGE H1 H N N 224 PGE H12 H N N 225 PGE HO1 H N N 226 PGE H2 H N N 227 PGE H22 H N N 228 PGE H3 H N N 229 PGE H32 H N N 230 PGE H4 H N N 231 PGE H42 H N N 232 PGE HO4 H N N 233 PGE H6 H N N 234 PGE H62 H N N 235 PGE H5 H N N 236 PGE H52 H N N 237 RER C1 C N R 238 RER C2 C N N 239 RER C3 C N S 240 RER N3 N N N 241 RER C3A C N N 242 RER C4 C N S 243 RER O4 O N N 244 RER C5 C N S 245 RER O5 O N N 246 RER C5A C N N 247 RER O1 O N N 248 RER H1 H N N 249 RER H21C H N N 250 RER H22C H N N 251 RER HO1 H N N 252 RER H31N H N N 253 RER H32N H N N 254 RER H3A1 H N N 255 RER H3A2 H N N 256 RER H3A3 H N N 257 RER H4 H N N 258 RER HO4 H N N 259 RER H5 H N N 260 RER H5A1 H N N 261 RER H5A2 H N N 262 RER H5A3 H N N 263 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 3FG N CA sing N N 1 3FG OD1 CD1 sing N N 2 3FG CD1 CG1 sing Y N 3 3FG CD1 CZ doub Y N 4 3FG CG1 CB doub Y N 5 3FG CZ CD2 sing Y N 6 3FG CD2 OD2 sing N N 7 3FG CD2 CG2 doub Y N 8 3FG CG2 CB sing Y N 9 3FG CB CA sing N N 10 3FG CA C sing N N 11 3FG C O doub N N 12 3FG C OXT sing N N 13 3FG N H sing N N 14 3FG N H2 sing N N 15 3FG CA HA sing N N 16 3FG OD1 HD1 sing N N 17 3FG CG1 HG1 sing N N 18 3FG CZ HZ sing N N 19 3FG OD2 HD2 sing N N 20 3FG CG2 HG2 sing N N 21 3FG OXT HXT sing N N 22 ACE C O doub N N 23 ACE C CH3 sing N N 24 ACE C H sing N N 25 ACE CH3 H1 sing N N 26 ACE CH3 H2 sing N N 27 ACE CH3 H3 sing N N 28 ASN N CA sing N N 29 ASN N H sing N N 30 ASN N H2 sing N N 31 ASN CA C sing N N 32 ASN CA CB sing N N 33 ASN CA HA sing N N 34 ASN C O doub N N 35 ASN C OXT sing N N 36 ASN CB CG sing N N 37 ASN CB HB2 sing N N 38 ASN CB HB3 sing N N 39 ASN CG OD1 doub N N 40 ASN CG ND2 sing N N 41 ASN ND2 HD21 sing N N 42 ASN ND2 HD22 sing N N 43 ASN OXT HXT sing N N 44 BGC C2 C3 sing N N 45 BGC C2 C1 sing N N 46 BGC C2 O2 sing N N 47 BGC C2 H2 sing N N 48 BGC C3 C4 sing N N 49 BGC C3 O3 sing N N 50 BGC C3 H3 sing N N 51 BGC C4 C5 sing N N 52 BGC C4 O4 sing N N 53 BGC C4 H4 sing N N 54 BGC C5 C6 sing N N 55 BGC C5 O5 sing N N 56 BGC C5 H5 sing N N 57 BGC C6 O6 sing N N 58 BGC C6 H61 sing N N 59 BGC C6 H62 sing N N 60 BGC C1 O1 sing N N 61 BGC C1 O5 sing N N 62 BGC C1 H1 sing N N 63 BGC O1 HO1 sing N N 64 BGC O2 HO2 sing N N 65 BGC O3 HO3 sing N N 66 BGC O4 HO4 sing N N 67 BGC O6 HO6 sing N N 68 BO3 B O1 sing N N 69 BO3 B O2 sing N N 70 BO3 B O3 sing N N 71 BO3 O1 HO1 sing N N 72 BO3 O2 HO2 sing N N 73 BO3 O3 HO3 sing N N 74 DAL N CA sing N N 75 DAL N H sing N N 76 DAL N H2 sing N N 77 DAL CA CB sing N N 78 DAL CA C sing N N 79 DAL CA HA sing N N 80 DAL CB HB1 sing N N 81 DAL CB HB2 sing N N 82 DAL CB HB3 sing N N 83 DAL C O doub N N 84 DAL C OXT sing N N 85 DAL OXT HXT sing N N 86 DMS S O doub N N 87 DMS S C1 sing N N 88 DMS S C2 sing N N 89 DMS C1 H11 sing N N 90 DMS C1 H12 sing N N 91 DMS C1 H13 sing N N 92 DMS C2 H21 sing N N 93 DMS C2 H22 sing N N 94 DMS C2 H23 sing N N 95 DSN N CA sing N N 96 DSN N H sing N N 97 DSN N H2 sing N N 98 DSN CA C sing N N 99 DSN CA CB sing N N 100 DSN CA HA sing N N 101 DSN C O doub N N 102 DSN C OXT sing N N 103 DSN OXT HXT sing N N 104 DSN CB OG sing N N 105 DSN CB HB2 sing N N 106 DSN CB HB3 sing N N 107 DSN OG HG sing N N 108 GHP N CA sing N N 109 GHP N H sing N N 110 GHP N H2 sing N N 111 GHP CA C sing N N 112 GHP CA C1 sing N N 113 GHP CA HA sing N N 114 GHP C O doub N N 115 GHP C OXT sing N N 116 GHP OXT HXT sing N N 117 GHP C1 C2 doub Y N 118 GHP C1 C6 sing Y N 119 GHP C2 C3 sing Y N 120 GHP C2 HC2 sing N N 121 GHP C3 C4 doub Y N 122 GHP C3 H3 sing N N 123 GHP C4 O4 sing N N 124 GHP C4 C5 sing Y N 125 GHP O4 HO4 sing N N 126 GHP C5 C6 doub Y N 127 GHP C5 H5 sing N N 128 GHP C6 H6 sing N N 129 HOH O H1 sing N N 130 HOH O H2 sing N N 131 MLU N CN sing N N 132 MLU N CA sing N N 133 MLU CA C sing N N 134 MLU CA CB sing N N 135 MLU C O doub N N 136 MLU C OXT sing N N 137 MLU CB CG sing N N 138 MLU CG CD1 sing N N 139 MLU CG CD2 sing N N 140 MLU N H sing N N 141 MLU CN HCN1 sing N N 142 MLU CN HCN2 sing N N 143 MLU CN HCN3 sing N N 144 MLU CA HA sing N N 145 MLU CB HB2 sing N N 146 MLU CB HB3 sing N N 147 MLU OXT HXT sing N N 148 MLU CG HG sing N N 149 MLU CD1 HD11 sing N N 150 MLU CD1 HD12 sing N N 151 MLU CD1 HD13 sing N N 152 MLU CD2 HD21 sing N N 153 MLU CD2 HD22 sing N N 154 MLU CD2 HD23 sing N N 155 OMY N CA sing N N 156 OMY OCZ CZ sing N N 157 OMY CZ CE2 sing Y N 158 OMY CZ CE1 doub Y N 159 OMY CE2 CD2 doub Y N 160 OMY CD2 CG sing Y N 161 OMY CG CD1 doub Y N 162 OMY CG CB sing N N 163 OMY CD1 CE1 sing Y N 164 OMY CE1 CL sing N N 165 OMY C O doub N N 166 OMY C CA sing N N 167 OMY C OXT sing N N 168 OMY CA CB sing N N 169 OMY CB ODE sing N N 170 OMY N H sing N N 171 OMY N H2 sing N N 172 OMY CA HA sing N N 173 OMY OCZ HCZ sing N N 174 OMY CE2 HE2 sing N N 175 OMY CD2 HD2 sing N N 176 OMY CD1 HD1 sing N N 177 OMY CB HB sing N N 178 OMY OXT HXT sing N N 179 OMY ODE HDE sing N N 180 OMZ N CA sing N N 181 OMZ CA C sing N N 182 OMZ CA CB sing N N 183 OMZ C O doub N N 184 OMZ C OXT sing N N 185 OMZ CL CE1 sing N N 186 OMZ CB OC sing N N 187 OMZ CB CG sing N N 188 OMZ CG CD1 doub Y N 189 OMZ CG CD2 sing Y N 190 OMZ CD1 CE1 sing Y N 191 OMZ CD2 CE2 doub Y N 192 OMZ CE1 CZ doub Y N 193 OMZ CE2 CZ sing Y N 194 OMZ CZ OH sing N N 195 OMZ N H sing N N 196 OMZ N H2 sing N N 197 OMZ CA HA sing N N 198 OMZ CB HB sing N N 199 OMZ OXT HXT sing N N 200 OMZ OC HC sing N N 201 OMZ CD1 HD1 sing N N 202 OMZ CD2 HD2 sing N N 203 OMZ CE2 HE2 sing N N 204 OMZ OH HH sing N N 205 PGE C1 O1 sing N N 206 PGE C1 C2 sing N N 207 PGE C1 H1 sing N N 208 PGE C1 H12 sing N N 209 PGE O1 HO1 sing N N 210 PGE C2 O2 sing N N 211 PGE C2 H2 sing N N 212 PGE C2 H22 sing N N 213 PGE O2 C3 sing N N 214 PGE C3 C4 sing N N 215 PGE C3 H3 sing N N 216 PGE C3 H32 sing N N 217 PGE C4 O3 sing N N 218 PGE C4 H4 sing N N 219 PGE C4 H42 sing N N 220 PGE O4 C6 sing N N 221 PGE O4 HO4 sing N N 222 PGE C6 C5 sing N N 223 PGE C6 H6 sing N N 224 PGE C6 H62 sing N N 225 PGE C5 O3 sing N N 226 PGE C5 H5 sing N N 227 PGE C5 H52 sing N N 228 RER C1 C2 sing N N 229 RER C1 O5 sing N N 230 RER C1 O1 sing N N 231 RER C2 C3 sing N N 232 RER C3 N3 sing N N 233 RER C3 C3A sing N N 234 RER C3 C4 sing N N 235 RER C4 O4 sing N N 236 RER C4 C5 sing N N 237 RER C5 O5 sing N N 238 RER C5 C5A sing N N 239 RER C1 H1 sing N N 240 RER C2 H21C sing N N 241 RER C2 H22C sing N N 242 RER O1 HO1 sing N N 243 RER N3 H31N sing N N 244 RER N3 H32N sing N N 245 RER C3A H3A1 sing N N 246 RER C3A H3A2 sing N N 247 RER C3A H3A3 sing N N 248 RER C4 H4 sing N N 249 RER O4 HO4 sing N N 250 RER C5 H5 sing N N 251 RER C5A H5A1 sing N N 252 RER C5A H5A2 sing N N 253 RER C5A H5A3 sing N N 254 # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number R01AI148679 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 3 BGC 1 n 3 RER 2 n # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1AA5 _pdbx_initial_refinement_model.details ? # _pdbx_related_exp_data_set.data_reference 10.5281/zenodo.7650364 _pdbx_related_exp_data_set.data_set_type 'diffraction image data' _pdbx_related_exp_data_set.details ? _pdbx_related_exp_data_set.metadata_reference ? _pdbx_related_exp_data_set.ordinal 1 # _space_group.name_H-M_alt 'P 21 21 21' _space_group.name_Hall 'P 2ac 2ab' _space_group.IT_number 19 _space_group.crystal_system orthorhombic _space_group.id 1 # _atom_sites.entry_id 8G82 _atom_sites.fract_transf_matrix[1][1] 0.032798 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014055 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012130 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source B ? ? 2.40390 1.74082 0.84097 ? 40.64930 0.64934 12.24639 ? 0.0 ;3-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? CL ? ? 9.50761 7.44341 ? ? 1.04373 23.83732 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? S ? ? 9.55732 6.39887 ? ? 1.23737 29.19336 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_