HEADER DNA BINDING PROTEIN/DNA 17-FEB-23 8G8E TITLE HUMAN OCT4 BOUND TO NUCLEOSOME WITH HUMAN LIN28B SEQUENCE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIN28B DNA (32-MER); COMPND 3 CHAIN: J; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: LIN28B DNA (32-MER); COMPND 7 CHAIN: I; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: POU DOMAIN, CLASS 5, TRANSCRIPTION FACTOR 1; COMPND 11 CHAIN: X; COMPND 12 SYNONYM: OCTAMER-BINDING PROTEIN 3,OCT-3,OCTAMER-BINDING PROTEIN 4, COMPND 13 OCT-4,OCTAMER-BINDING TRANSCRIPTION FACTOR 3,OTF-3; COMPND 14 ENGINEERED: YES; COMPND 15 OTHER_DETAILS: HUMAN OCT4 SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_COMMON: HUMAN; SOURCE 5 ORGANISM_TAXID: 9606; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: POU5F1, OCT3, OCT4, OTF3; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OCT4, NUCLEOSOME, LIN28B DNA, IPSC, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR K.K.SINHA,S.BILOKAPIC,Y.DU,D.MALIK,M.HALIC REVDAT 5 26-JUL-23 8G8E 1 JRNL REVDAT 4 07-JUN-23 8G8E 1 JRNL REVDAT 3 24-MAY-23 8G8E 1 JRNL REVDAT 2 17-MAY-23 8G8E 1 REMARK REVDAT 1 22-MAR-23 8G8E 0 JRNL AUTH K.K.SINHA,S.BILOKAPIC,Y.DU,D.MALIK,M.HALIC JRNL TITL HISTONE MODIFICATIONS REGULATE PIONEER TRANSCRIPTION FACTOR JRNL TITL 2 COOPERATIVITY. JRNL REF NATURE V. 619 378 2023 JRNL REFN ESSN 1476-4687 JRNL PMID 37225990 JRNL DOI 10.1038/S41586-023-06112-6 REMARK 2 REMARK 2 RESOLUTION. 3.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : RELION REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.900 REMARK 3 NUMBER OF PARTICLES : 65000 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8G8E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-MAR-23. REMARK 100 THE DEPOSITION ID IS D_1000272356. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : HUMAN OCT4 BOUND TO A REMARK 245 NUCLEOSOME WITH HUMAN LIN28 DNA REMARK 245 SEQUENCE REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.20 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 700.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 3000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 9000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: J, I, X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 DG J -106 REMARK 465 DC J -105 REMARK 465 DA J -104 REMARK 465 DT J -103 REMARK 465 DA J -102 REMARK 465 DA J -101 REMARK 465 DG J -68 REMARK 465 DT J -67 REMARK 465 DA J -66 REMARK 465 DT J -65 REMARK 465 DT J -64 REMARK 465 DA J -63 REMARK 465 DA J -62 REMARK 465 DC J -61 REMARK 465 DA J -60 REMARK 465 DT J -59 REMARK 465 DG J -58 REMARK 465 DG J -57 REMARK 465 DA J -56 REMARK 465 DA J -55 REMARK 465 DC J -54 REMARK 465 DT J -53 REMARK 465 DT J -52 REMARK 465 DA J -51 REMARK 465 DC J -50 REMARK 465 DT J -49 REMARK 465 DC J -48 REMARK 465 DC J -47 REMARK 465 DA J -46 REMARK 465 DA J -45 REMARK 465 DC J -44 REMARK 465 DA J -43 REMARK 465 DA J -42 REMARK 465 DT J -41 REMARK 465 DA J -40 REMARK 465 DC J -39 REMARK 465 DA J -38 REMARK 465 DG J -37 REMARK 465 DA J -36 REMARK 465 DT J -35 REMARK 465 DG J -34 REMARK 465 DC J -33 REMARK 465 DT J -32 REMARK 465 DG J -31 REMARK 465 DA J -30 REMARK 465 DA J -29 REMARK 465 DT J -28 REMARK 465 DA J -27 REMARK 465 DA J -26 REMARK 465 DA J -25 REMARK 465 DT J -24 REMARK 465 DG J -23 REMARK 465 DT J -22 REMARK 465 DA J -21 REMARK 465 DG J -20 REMARK 465 DT J -19 REMARK 465 DC J -18 REMARK 465 DT J -17 REMARK 465 DA J -16 REMARK 465 DA J -15 REMARK 465 DG J -14 REMARK 465 DT J -13 REMARK 465 DG J -12 REMARK 465 DA J -11 REMARK 465 DA J -10 REMARK 465 DG J -9 REMARK 465 DA J -8 REMARK 465 DA J -7 REMARK 465 DA J -6 REMARK 465 DG J -5 REMARK 465 DA J -4 REMARK 465 DA J -3 REMARK 465 DG J -2 REMARK 465 DG J -1 REMARK 465 DA J 0 REMARK 465 DA J 1 REMARK 465 DA J 2 REMARK 465 DG J 3 REMARK 465 DG J 4 REMARK 465 DT J 5 REMARK 465 DG J 6 REMARK 465 DG J 7 REMARK 465 DG J 8 REMARK 465 DA J 9 REMARK 465 DG J 10 REMARK 465 DC J 11 REMARK 465 DT J 12 REMARK 465 DG J 13 REMARK 465 DC J 14 REMARK 465 DC J 15 REMARK 465 DA J 16 REMARK 465 DT J 17 REMARK 465 DC J 18 REMARK 465 DA J 19 REMARK 465 DC J 20 REMARK 465 DT J 21 REMARK 465 DC J 22 REMARK 465 DA J 23 REMARK 465 DG J 24 REMARK 465 DA J 25 REMARK 465 DA J 26 REMARK 465 DT J 27 REMARK 465 DT J 28 REMARK 465 DG J 29 REMARK 465 DT J 30 REMARK 465 DC J 31 REMARK 465 DC J 32 REMARK 465 DA J 33 REMARK 465 DG J 34 REMARK 465 DC J 35 REMARK 465 DA J 36 REMARK 465 DG J 37 REMARK 465 DG J 38 REMARK 465 DG J 39 REMARK 465 DA J 40 REMARK 465 DT J 41 REMARK 465 DT J 42 REMARK 465 DG J 43 REMARK 465 DT J 44 REMARK 465 DG J 45 REMARK 465 DC J 46 REMARK 465 DA J 47 REMARK 465 DA J 48 REMARK 465 DG J 49 REMARK 465 DC J 50 REMARK 465 DT J 51 REMARK 465 DT J 52 REMARK 465 DG J 53 REMARK 465 DT J 54 REMARK 465 DG J 55 REMARK 465 DA J 56 REMARK 465 DA J 57 REMARK 465 DT J 58 REMARK 465 DA J 59 REMARK 465 DA J 60 REMARK 465 DA J 61 REMARK 465 DG J 62 REMARK 465 DA J 63 REMARK 465 DC J 64 REMARK 465 DA J 65 REMARK 465 DC J 66 REMARK 465 DA J 67 REMARK 465 DT J 68 REMARK 465 DA J 69 REMARK 465 DC J 70 REMARK 465 DT J 71 REMARK 465 DT J 72 REMARK 465 DC J 73 REMARK 465 DA J 74 REMARK 465 DT J 75 REMARK 465 DA I -75 REMARK 465 DT I -74 REMARK 465 DG I -73 REMARK 465 DA I -72 REMARK 465 DA I -71 REMARK 465 DG I -70 REMARK 465 DT I -69 REMARK 465 DA I -68 REMARK 465 DT I -67 REMARK 465 DG I -66 REMARK 465 DT I -65 REMARK 465 DG I -64 REMARK 465 DT I -63 REMARK 465 DC I -62 REMARK 465 DT I -61 REMARK 465 DT I -60 REMARK 465 DT I -59 REMARK 465 DA I -58 REMARK 465 DT I -57 REMARK 465 DT I -56 REMARK 465 DC I -55 REMARK 465 DA I -54 REMARK 465 DC I -53 REMARK 465 DA I -52 REMARK 465 DA I -51 REMARK 465 DG I -50 REMARK 465 DC I -49 REMARK 465 DT I -48 REMARK 465 DT I -47 REMARK 465 DG I -46 REMARK 465 DC I -45 REMARK 465 DA I -44 REMARK 465 DC I -43 REMARK 465 DA I -42 REMARK 465 DA I -41 REMARK 465 DT I -40 REMARK 465 DC I -39 REMARK 465 DC I -38 REMARK 465 DC I -37 REMARK 465 DT I -36 REMARK 465 DG I -35 REMARK 465 DC I -34 REMARK 465 DT I -33 REMARK 465 DG I -32 REMARK 465 DG I -31 REMARK 465 DA I -30 REMARK 465 DC I -29 REMARK 465 DA I -28 REMARK 465 DA I -27 REMARK 465 DT I -26 REMARK 465 DT I -25 REMARK 465 DC I -24 REMARK 465 DT I -23 REMARK 465 DG I -22 REMARK 465 DA I -21 REMARK 465 DG I -20 REMARK 465 DT I -19 REMARK 465 DG I -18 REMARK 465 DA I -17 REMARK 465 DT I -16 REMARK 465 DG I -15 REMARK 465 DG I -14 REMARK 465 DC I -13 REMARK 465 DA I -12 REMARK 465 DG I -11 REMARK 465 DC I -10 REMARK 465 DT I -9 REMARK 465 DC I -8 REMARK 465 DC I -7 REMARK 465 DC I -6 REMARK 465 DA I -5 REMARK 465 DC I -4 REMARK 465 DC I -3 REMARK 465 DT I -2 REMARK 465 DT I -1 REMARK 465 DT I 0 REMARK 465 DC I 1 REMARK 465 DC I 2 REMARK 465 DT I 3 REMARK 465 DT I 4 REMARK 465 DC I 5 REMARK 465 DT I 6 REMARK 465 DT I 7 REMARK 465 DT I 8 REMARK 465 DC I 9 REMARK 465 DT I 10 REMARK 465 DT I 11 REMARK 465 DC I 12 REMARK 465 DA I 13 REMARK 465 DC I 14 REMARK 465 DT I 15 REMARK 465 DT I 16 REMARK 465 DA I 17 REMARK 465 DG I 18 REMARK 465 DA I 19 REMARK 465 DC I 20 REMARK 465 DT I 21 REMARK 465 DA I 22 REMARK 465 DC I 23 REMARK 465 DA I 24 REMARK 465 DT I 25 REMARK 465 DT I 26 REMARK 465 DT I 27 REMARK 465 DA I 28 REMARK 465 DT I 29 REMARK 465 DT I 30 REMARK 465 DC I 31 REMARK 465 DA I 32 REMARK 465 DG I 33 REMARK 465 DC I 34 REMARK 465 DA I 35 REMARK 465 DT I 36 REMARK 465 DC I 37 REMARK 465 DT I 38 REMARK 465 DG I 39 REMARK 465 DT I 40 REMARK 465 DA I 41 REMARK 465 DT I 42 REMARK 465 DT I 43 REMARK 465 DG I 44 REMARK 465 DT I 45 REMARK 465 DT I 46 REMARK 465 DG I 47 REMARK 465 DG I 48 REMARK 465 DA I 49 REMARK 465 DG I 50 REMARK 465 DT I 51 REMARK 465 DA I 52 REMARK 465 DA I 53 REMARK 465 DG I 54 REMARK 465 DT I 55 REMARK 465 DT I 56 REMARK 465 DC I 57 REMARK 465 DC I 58 REMARK 465 DA I 59 REMARK 465 DT I 60 REMARK 465 DG I 61 REMARK 465 DT I 62 REMARK 465 DT I 63 REMARK 465 DA I 64 REMARK 465 DA I 65 REMARK 465 DT I 66 REMARK 465 DA I 67 REMARK 465 DC I 68 REMARK 465 DT I 101 REMARK 465 DT I 102 REMARK 465 DA I 103 REMARK 465 DT I 104 REMARK 465 DG I 105 REMARK 465 DC I 106 REMARK 465 GLY X -34 REMARK 465 SER X -33 REMARK 465 SER X -32 REMARK 465 HIS X -31 REMARK 465 HIS X -30 REMARK 465 HIS X -29 REMARK 465 HIS X -28 REMARK 465 HIS X -27 REMARK 465 HIS X -26 REMARK 465 SER X -25 REMARK 465 SER X -24 REMARK 465 GLY X -23 REMARK 465 LEU X -22 REMARK 465 VAL X -21 REMARK 465 PRO X -20 REMARK 465 ARG X -19 REMARK 465 GLY X -18 REMARK 465 SER X -17 REMARK 465 HIS X -16 REMARK 465 MET X -15 REMARK 465 ALA X -14 REMARK 465 SER X -13 REMARK 465 MET X -12 REMARK 465 THR X -11 REMARK 465 GLY X -10 REMARK 465 GLY X -9 REMARK 465 GLN X -8 REMARK 465 GLN X -7 REMARK 465 MET X -6 REMARK 465 GLY X -5 REMARK 465 ARG X -4 REMARK 465 ASP X -3 REMARK 465 PRO X -2 REMARK 465 ASN X -1 REMARK 465 SER X 0 REMARK 465 MET X 1 REMARK 465 ALA X 2 REMARK 465 GLY X 3 REMARK 465 HIS X 4 REMARK 465 LEU X 5 REMARK 465 ALA X 6 REMARK 465 SER X 7 REMARK 465 ASP X 8 REMARK 465 PHE X 9 REMARK 465 ALA X 10 REMARK 465 PHE X 11 REMARK 465 SER X 12 REMARK 465 PRO X 13 REMARK 465 PRO X 14 REMARK 465 PRO X 15 REMARK 465 GLY X 16 REMARK 465 GLY X 17 REMARK 465 GLY X 18 REMARK 465 GLY X 19 REMARK 465 ASP X 20 REMARK 465 GLY X 21 REMARK 465 PRO X 22 REMARK 465 GLY X 23 REMARK 465 GLY X 24 REMARK 465 PRO X 25 REMARK 465 GLU X 26 REMARK 465 PRO X 27 REMARK 465 GLY X 28 REMARK 465 TRP X 29 REMARK 465 VAL X 30 REMARK 465 ASP X 31 REMARK 465 PRO X 32 REMARK 465 ARG X 33 REMARK 465 THR X 34 REMARK 465 TRP X 35 REMARK 465 LEU X 36 REMARK 465 SER X 37 REMARK 465 PHE X 38 REMARK 465 GLN X 39 REMARK 465 GLY X 40 REMARK 465 PRO X 41 REMARK 465 PRO X 42 REMARK 465 GLY X 43 REMARK 465 GLY X 44 REMARK 465 PRO X 45 REMARK 465 GLY X 46 REMARK 465 ILE X 47 REMARK 465 GLY X 48 REMARK 465 PRO X 49 REMARK 465 GLY X 50 REMARK 465 VAL X 51 REMARK 465 GLY X 52 REMARK 465 PRO X 53 REMARK 465 GLY X 54 REMARK 465 SER X 55 REMARK 465 GLU X 56 REMARK 465 VAL X 57 REMARK 465 TRP X 58 REMARK 465 GLY X 59 REMARK 465 ILE X 60 REMARK 465 PRO X 61 REMARK 465 PRO X 62 REMARK 465 CYS X 63 REMARK 465 PRO X 64 REMARK 465 PRO X 65 REMARK 465 PRO X 66 REMARK 465 TYR X 67 REMARK 465 GLU X 68 REMARK 465 PHE X 69 REMARK 465 CYS X 70 REMARK 465 GLY X 71 REMARK 465 GLY X 72 REMARK 465 MET X 73 REMARK 465 ALA X 74 REMARK 465 TYR X 75 REMARK 465 CYS X 76 REMARK 465 GLY X 77 REMARK 465 PRO X 78 REMARK 465 GLN X 79 REMARK 465 VAL X 80 REMARK 465 GLY X 81 REMARK 465 VAL X 82 REMARK 465 GLY X 83 REMARK 465 LEU X 84 REMARK 465 VAL X 85 REMARK 465 PRO X 86 REMARK 465 GLN X 87 REMARK 465 GLY X 88 REMARK 465 GLY X 89 REMARK 465 LEU X 90 REMARK 465 GLU X 91 REMARK 465 THR X 92 REMARK 465 SER X 93 REMARK 465 GLN X 94 REMARK 465 PRO X 95 REMARK 465 GLU X 96 REMARK 465 GLY X 97 REMARK 465 GLU X 98 REMARK 465 ALA X 99 REMARK 465 GLY X 100 REMARK 465 VAL X 101 REMARK 465 GLY X 102 REMARK 465 VAL X 103 REMARK 465 GLU X 104 REMARK 465 SER X 105 REMARK 465 ASN X 106 REMARK 465 SER X 107 REMARK 465 ASP X 108 REMARK 465 GLY X 109 REMARK 465 ALA X 110 REMARK 465 SER X 111 REMARK 465 PRO X 112 REMARK 465 GLU X 113 REMARK 465 PRO X 114 REMARK 465 CYS X 115 REMARK 465 THR X 116 REMARK 465 VAL X 117 REMARK 465 THR X 118 REMARK 465 PRO X 119 REMARK 465 GLY X 120 REMARK 465 ALA X 121 REMARK 465 VAL X 122 REMARK 465 LYS X 123 REMARK 465 LEU X 124 REMARK 465 GLU X 125 REMARK 465 LYS X 126 REMARK 465 GLU X 127 REMARK 465 LYS X 128 REMARK 465 LEU X 129 REMARK 465 GLU X 130 REMARK 465 GLN X 131 REMARK 465 ASN X 132 REMARK 465 PRO X 133 REMARK 465 GLU X 134 REMARK 465 GLU X 135 REMARK 465 SER X 136 REMARK 465 GLN X 137 REMARK 465 ASP X 138 REMARK 465 ILE X 139 REMARK 465 CYS X 221 REMARK 465 LYS X 222 REMARK 465 ALA X 223 REMARK 465 GLU X 224 REMARK 465 THR X 225 REMARK 465 LEU X 226 REMARK 465 VAL X 227 REMARK 465 GLN X 228 REMARK 465 ALA X 229 REMARK 465 SER X 289 REMARK 465 SER X 290 REMARK 465 ASP X 291 REMARK 465 TYR X 292 REMARK 465 ALA X 293 REMARK 465 GLN X 294 REMARK 465 ARG X 295 REMARK 465 GLU X 296 REMARK 465 ASP X 297 REMARK 465 PHE X 298 REMARK 465 GLU X 299 REMARK 465 ALA X 300 REMARK 465 ALA X 301 REMARK 465 GLY X 302 REMARK 465 SER X 303 REMARK 465 PRO X 304 REMARK 465 PHE X 305 REMARK 465 SER X 306 REMARK 465 GLY X 307 REMARK 465 GLY X 308 REMARK 465 PRO X 309 REMARK 465 VAL X 310 REMARK 465 SER X 311 REMARK 465 PHE X 312 REMARK 465 PRO X 313 REMARK 465 LEU X 314 REMARK 465 ALA X 315 REMARK 465 PRO X 316 REMARK 465 GLY X 317 REMARK 465 PRO X 318 REMARK 465 HIS X 319 REMARK 465 PHE X 320 REMARK 465 GLY X 321 REMARK 465 THR X 322 REMARK 465 PRO X 323 REMARK 465 GLY X 324 REMARK 465 TYR X 325 REMARK 465 GLY X 326 REMARK 465 SER X 327 REMARK 465 PRO X 328 REMARK 465 HIS X 329 REMARK 465 PHE X 330 REMARK 465 THR X 331 REMARK 465 ALA X 332 REMARK 465 LEU X 333 REMARK 465 TYR X 334 REMARK 465 SER X 335 REMARK 465 SER X 336 REMARK 465 VAL X 337 REMARK 465 PRO X 338 REMARK 465 PHE X 339 REMARK 465 PRO X 340 REMARK 465 GLU X 341 REMARK 465 GLY X 342 REMARK 465 GLU X 343 REMARK 465 ALA X 344 REMARK 465 PHE X 345 REMARK 465 PRO X 346 REMARK 465 PRO X 347 REMARK 465 VAL X 348 REMARK 465 SER X 349 REMARK 465 VAL X 350 REMARK 465 THR X 351 REMARK 465 THR X 352 REMARK 465 LEU X 353 REMARK 465 GLY X 354 REMARK 465 SER X 355 REMARK 465 PRO X 356 REMARK 465 MET X 357 REMARK 465 HIS X 358 REMARK 465 SER X 359 REMARK 465 ASN X 360 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT J -88 C3' - C2' - C1' ANGL. DEV. = -4.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU X 250 -4.36 71.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-29846 RELATED DB: EMDB REMARK 900 HUMAN OCT4 BOUND TO NUCLEOSOME WITH HUMAN LIN28B SEQUENCE REMARK 900 RELATED ID: EMD-29850 RELATED DB: EMDB REMARK 900 HUMAN OCT4 BOUND TO NUCLEOSOME WITH HUMAN LIN28B SEQUENCE REMARK 900 RELATED ID: EMD-29841 RELATED DB: EMDB REMARK 900 HUMAN OCT4 BOUND TO NUCLEOSOME WITH HUMAN NMATN1 SEQUENCE (FOCUSED REMARK 900 REFINEMENT OF OCT4 BOUND REGION) REMARK 900 RELATED ID: EMD-29837 RELATED DB: EMDB REMARK 900 HUMAN OCT4 BOUND TO NUCLEOSOME WITH HUMAN NMATN1 SEQUENCE (FOCUSED REMARK 900 REFINEMENT OF NUCLEOSOME) REMARK 900 RELATED ID: EMD-29843 RELATED DB: EMDB REMARK 900 HUMAN OCT4 BOUND TO NUCLEOSOME WITH HUMAN NMATN1 SEQUENCE REMARK 900 RELATED ID: EMD-29845 RELATED DB: EMDB REMARK 900 NUCLEOSOME WITH HUMAN LIN28B SEQUENCE IN COMPLEX WITH HUMAN OCT4 REMARK 900 RELATED ID: 8G8G RELATED DB: PDB REMARK 900 HUMAN OCT4 BOUND TO NUCLEOSOME WITH HUMAN LIN28B SEQUENCE REMARK 900 RELATED ID: 8G8B RELATED DB: PDB REMARK 900 NUCLEOSOME WITH HUMAN LIN28B SEQUENCE IN COMPLEX WITH HUMAN OCT4 REMARK 900 RELATED ID: 8G88 RELATED DB: PDB REMARK 900 HUMAN OCT4 BOUND TO NUCLEOSOME WITH HUMAN NMATN1 SEQUENCE REMARK 900 RELATED ID: 8G87 RELATED DB: PDB REMARK 900 HUMAN OCT4 BOUND TO NUCLEOSOME WITH HUMAN NMATN1 SEQUENCE (FOCUSED REMARK 900 REFINEMENT OF OCT4 BOUND REGION) REMARK 900 RELATED ID: 8G86 RELATED DB: PDB REMARK 900 HUMAN OCT4 BOUND TO NUCLEOSOME WITH HUMAN NMATN1 SEQUENCE (FOCUSED REMARK 900 REFINEMENT OF NUCLEOSOME) DBREF 8G8E J -106 75 PDB 8G8E 8G8E -106 75 DBREF 8G8E I -75 106 PDB 8G8E 8G8E -75 106 DBREF 8G8E X 1 360 UNP Q01860 PO5F1_HUMAN 1 360 SEQADV 8G8E GLY X -34 UNP Q01860 EXPRESSION TAG SEQADV 8G8E SER X -33 UNP Q01860 EXPRESSION TAG SEQADV 8G8E SER X -32 UNP Q01860 EXPRESSION TAG SEQADV 8G8E HIS X -31 UNP Q01860 EXPRESSION TAG SEQADV 8G8E HIS X -30 UNP Q01860 EXPRESSION TAG SEQADV 8G8E HIS X -29 UNP Q01860 EXPRESSION TAG SEQADV 8G8E HIS X -28 UNP Q01860 EXPRESSION TAG SEQADV 8G8E HIS X -27 UNP Q01860 EXPRESSION TAG SEQADV 8G8E HIS X -26 UNP Q01860 EXPRESSION TAG SEQADV 8G8E SER X -25 UNP Q01860 EXPRESSION TAG SEQADV 8G8E SER X -24 UNP Q01860 EXPRESSION TAG SEQADV 8G8E GLY X -23 UNP Q01860 EXPRESSION TAG SEQADV 8G8E LEU X -22 UNP Q01860 EXPRESSION TAG SEQADV 8G8E VAL X -21 UNP Q01860 EXPRESSION TAG SEQADV 8G8E PRO X -20 UNP Q01860 EXPRESSION TAG SEQADV 8G8E ARG X -19 UNP Q01860 EXPRESSION TAG SEQADV 8G8E GLY X -18 UNP Q01860 EXPRESSION TAG SEQADV 8G8E SER X -17 UNP Q01860 EXPRESSION TAG SEQADV 8G8E HIS X -16 UNP Q01860 EXPRESSION TAG SEQADV 8G8E MET X -15 UNP Q01860 EXPRESSION TAG SEQADV 8G8E ALA X -14 UNP Q01860 EXPRESSION TAG SEQADV 8G8E SER X -13 UNP Q01860 EXPRESSION TAG SEQADV 8G8E MET X -12 UNP Q01860 EXPRESSION TAG SEQADV 8G8E THR X -11 UNP Q01860 EXPRESSION TAG SEQADV 8G8E GLY X -10 UNP Q01860 EXPRESSION TAG SEQADV 8G8E GLY X -9 UNP Q01860 EXPRESSION TAG SEQADV 8G8E GLN X -8 UNP Q01860 EXPRESSION TAG SEQADV 8G8E GLN X -7 UNP Q01860 EXPRESSION TAG SEQADV 8G8E MET X -6 UNP Q01860 EXPRESSION TAG SEQADV 8G8E GLY X -5 UNP Q01860 EXPRESSION TAG SEQADV 8G8E ARG X -4 UNP Q01860 EXPRESSION TAG SEQADV 8G8E ASP X -3 UNP Q01860 EXPRESSION TAG SEQADV 8G8E PRO X -2 UNP Q01860 EXPRESSION TAG SEQADV 8G8E ASN X -1 UNP Q01860 EXPRESSION TAG SEQADV 8G8E SER X 0 UNP Q01860 EXPRESSION TAG SEQRES 1 J 182 DG DC DA DT DA DA DG DT DT DA DA DG DT SEQRES 2 J 182 DG DG DT DA DT DT DA DA DC DA DT DA DT SEQRES 3 J 182 DC DC DT DC DA DG DT DG DG DT DG DA DG SEQRES 4 J 182 DT DA DT DT DA DA DC DA DT DG DG DA DA SEQRES 5 J 182 DC DT DT DA DC DT DC DC DA DA DC DA DA SEQRES 6 J 182 DT DA DC DA DG DA DT DG DC DT DG DA DA SEQRES 7 J 182 DT DA DA DA DT DG DT DA DG DT DC DT DA SEQRES 8 J 182 DA DG DT DG DA DA DG DA DA DA DG DA DA SEQRES 9 J 182 DG DG DA DA DA DG DG DT DG DG DG DA DG SEQRES 10 J 182 DC DT DG DC DC DA DT DC DA DC DT DC DA SEQRES 11 J 182 DG DA DA DT DT DG DT DC DC DA DG DC DA SEQRES 12 J 182 DG DG DG DA DT DT DG DT DG DC DA DA DG SEQRES 13 J 182 DC DT DT DG DT DG DA DA DT DA DA DA DG SEQRES 14 J 182 DA DC DA DC DA DT DA DC DT DT DC DA DT SEQRES 1 I 182 DA DT DG DA DA DG DT DA DT DG DT DG DT SEQRES 2 I 182 DC DT DT DT DA DT DT DC DA DC DA DA DG SEQRES 3 I 182 DC DT DT DG DC DA DC DA DA DT DC DC DC SEQRES 4 I 182 DT DG DC DT DG DG DA DC DA DA DT DT DC SEQRES 5 I 182 DT DG DA DG DT DG DA DT DG DG DC DA DG SEQRES 6 I 182 DC DT DC DC DC DA DC DC DT DT DT DC DC SEQRES 7 I 182 DT DT DC DT DT DT DC DT DT DC DA DC DT SEQRES 8 I 182 DT DA DG DA DC DT DA DC DA DT DT DT DA SEQRES 9 I 182 DT DT DC DA DG DC DA DT DC DT DG DT DA SEQRES 10 I 182 DT DT DG DT DT DG DG DA DG DT DA DA DG SEQRES 11 I 182 DT DT DC DC DA DT DG DT DT DA DA DT DA SEQRES 12 I 182 DC DT DC DA DC DC DA DC DT DG DA DG DG SEQRES 13 I 182 DA DT DA DT DG DT DT DA DA DT DA DC DC SEQRES 14 I 182 DA DC DT DT DA DA DC DT DT DA DT DG DC SEQRES 1 X 395 GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY LEU SEQRES 2 X 395 VAL PRO ARG GLY SER HIS MET ALA SER MET THR GLY GLY SEQRES 3 X 395 GLN GLN MET GLY ARG ASP PRO ASN SER MET ALA GLY HIS SEQRES 4 X 395 LEU ALA SER ASP PHE ALA PHE SER PRO PRO PRO GLY GLY SEQRES 5 X 395 GLY GLY ASP GLY PRO GLY GLY PRO GLU PRO GLY TRP VAL SEQRES 6 X 395 ASP PRO ARG THR TRP LEU SER PHE GLN GLY PRO PRO GLY SEQRES 7 X 395 GLY PRO GLY ILE GLY PRO GLY VAL GLY PRO GLY SER GLU SEQRES 8 X 395 VAL TRP GLY ILE PRO PRO CYS PRO PRO PRO TYR GLU PHE SEQRES 9 X 395 CYS GLY GLY MET ALA TYR CYS GLY PRO GLN VAL GLY VAL SEQRES 10 X 395 GLY LEU VAL PRO GLN GLY GLY LEU GLU THR SER GLN PRO SEQRES 11 X 395 GLU GLY GLU ALA GLY VAL GLY VAL GLU SER ASN SER ASP SEQRES 12 X 395 GLY ALA SER PRO GLU PRO CYS THR VAL THR PRO GLY ALA SEQRES 13 X 395 VAL LYS LEU GLU LYS GLU LYS LEU GLU GLN ASN PRO GLU SEQRES 14 X 395 GLU SER GLN ASP ILE LYS ALA LEU GLN LYS GLU LEU GLU SEQRES 15 X 395 GLN PHE ALA LYS LEU LEU LYS GLN LYS ARG ILE THR LEU SEQRES 16 X 395 GLY TYR THR GLN ALA ASP VAL GLY LEU THR LEU GLY VAL SEQRES 17 X 395 LEU PHE GLY LYS VAL PHE SER GLN THR THR ILE CYS ARG SEQRES 18 X 395 PHE GLU ALA LEU GLN LEU SER PHE LYS ASN MET CYS LYS SEQRES 19 X 395 LEU ARG PRO LEU LEU GLN LYS TRP VAL GLU GLU ALA ASP SEQRES 20 X 395 ASN ASN GLU ASN LEU GLN GLU ILE CYS LYS ALA GLU THR SEQRES 21 X 395 LEU VAL GLN ALA ARG LYS ARG LYS ARG THR SER ILE GLU SEQRES 22 X 395 ASN ARG VAL ARG GLY ASN LEU GLU ASN LEU PHE LEU GLN SEQRES 23 X 395 CYS PRO LYS PRO THR LEU GLN GLN ILE SER HIS ILE ALA SEQRES 24 X 395 GLN GLN LEU GLY LEU GLU LYS ASP VAL VAL ARG VAL TRP SEQRES 25 X 395 PHE CYS ASN ARG ARG GLN LYS GLY LYS ARG SER SER SER SEQRES 26 X 395 ASP TYR ALA GLN ARG GLU ASP PHE GLU ALA ALA GLY SER SEQRES 27 X 395 PRO PHE SER GLY GLY PRO VAL SER PHE PRO LEU ALA PRO SEQRES 28 X 395 GLY PRO HIS PHE GLY THR PRO GLY TYR GLY SER PRO HIS SEQRES 29 X 395 PHE THR ALA LEU TYR SER SER VAL PRO PHE PRO GLU GLY SEQRES 30 X 395 GLU ALA PHE PRO PRO VAL SER VAL THR THR LEU GLY SER SEQRES 31 X 395 PRO MET HIS SER ASN HELIX 1 AA1 ALA X 141 GLY X 161 1 21 HELIX 2 AA2 THR X 163 GLY X 176 1 14 HELIX 3 AA3 SER X 180 ALA X 189 1 10 HELIX 4 AA4 SER X 193 ALA X 211 1 19 HELIX 5 AA5 GLU X 215 ILE X 220 1 6 HELIX 6 AA6 GLU X 238 PHE X 249 1 12 HELIX 7 AA7 THR X 256 GLY X 268 1 13 HELIX 8 AA8 GLU X 270 SER X 288 1 19 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000