HEADER ANTIBIOTIC/LIPID TRANSPORT 23-FEB-23 8GAJ TITLE CRYSTAL STRUCTURE OF E. COLI LPTA IN COMPLEX WITH PODISUS TITLE 2 MACULIVENTRIS THANATIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIPOPOLYSACCHARIDE EXPORT SYSTEM PROTEIN LPTA; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: THANATIN; COMPND 7 CHAIN: B, D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: LPTA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: PODISUS MACULIVENTRIS; SOURCE 9 ORGANISM_COMMON: SPINED SOLDIER BUG; SOURCE 10 ORGANISM_TAXID: 29025; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 12 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS LPTA, THANATIN, ANTIBIOTIC, ANTIBIOTIC-LIPID TRANSPORT COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.HUYNH,A.KIBROM,B.DONALD,P.ZHOU REVDAT 2 16-OCT-24 8GAJ 1 REMARK REVDAT 1 19-JUL-23 8GAJ 0 JRNL AUTH K.HUYNH,A.KIBROM,B.R.DONALD,P.ZHOU JRNL TITL DISCOVERY, CHARACTERIZATION, AND REDESIGN OF POTENT JRNL TITL 2 ANTIMICROBIAL THANATIN ORTHOLOGS FROM CHINAVIA UBICA AND JRNL TITL 3 MURGANTIA HISTRIONICA TARGETING E. COLI LPTA. JRNL REF J STRUCT BIOL X V. 8 00091 2023 JRNL REFN ESSN 2590-1524 JRNL PMID 37416832 JRNL DOI 10.1016/J.YJSBX.2023.100091 REMARK 2 REMARK 2 RESOLUTION. 2.43 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.43 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.75 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 16461 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.920 REMARK 3 FREE R VALUE TEST SET COUNT : 810 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.7500 - 4.4100 1.00 2766 134 0.1835 0.2225 REMARK 3 2 4.4100 - 3.5000 1.00 2629 131 0.1670 0.2062 REMARK 3 3 3.5000 - 3.0600 1.00 2593 127 0.1787 0.2285 REMARK 3 4 3.0600 - 2.7800 1.00 2566 142 0.2104 0.2450 REMARK 3 5 2.7800 - 2.5800 1.00 2541 142 0.2204 0.3046 REMARK 3 6 2.5800 - 2.4300 1.00 2556 134 0.2394 0.2829 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.239 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.814 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.98 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 2271 REMARK 3 ANGLE : 0.617 3070 REMARK 3 CHIRALITY : 0.051 346 REMARK 3 PLANARITY : 0.005 407 REMARK 3 DIHEDRAL : 4.471 307 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 23 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 28 THROUGH 41 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.2314 -25.4767 -13.0257 REMARK 3 T TENSOR REMARK 3 T11: 0.1162 T22: 0.0605 REMARK 3 T33: 0.1784 T12: -0.0820 REMARK 3 T13: -0.0422 T23: 0.0436 REMARK 3 L TENSOR REMARK 3 L11: 0.7147 L22: 0.6015 REMARK 3 L33: 3.7582 L12: 0.0663 REMARK 3 L13: 0.5128 L23: 1.4065 REMARK 3 S TENSOR REMARK 3 S11: 0.0137 S12: -0.0770 S13: 0.0695 REMARK 3 S21: -0.1462 S22: -0.0251 S23: 0.2557 REMARK 3 S31: -0.2064 S32: -0.0998 S33: 0.0295 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 42 THROUGH 50 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.3639 -35.1143 -29.9049 REMARK 3 T TENSOR REMARK 3 T11: 0.4649 T22: 0.3210 REMARK 3 T33: 0.1756 T12: -0.1143 REMARK 3 T13: 0.0695 T23: -0.0279 REMARK 3 L TENSOR REMARK 3 L11: 5.0054 L22: 4.7989 REMARK 3 L33: 6.5417 L12: 0.0304 REMARK 3 L13: 1.8447 L23: -0.8648 REMARK 3 S TENSOR REMARK 3 S11: -0.1992 S12: 0.1882 S13: -0.4073 REMARK 3 S21: -0.6305 S22: 0.2549 S23: -0.0118 REMARK 3 S31: 0.4601 S32: -0.4229 S33: -0.0269 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 51 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.6729 -27.0176 -23.1465 REMARK 3 T TENSOR REMARK 3 T11: 0.2425 T22: 0.0675 REMARK 3 T33: 0.0897 T12: -0.0766 REMARK 3 T13: -0.0735 T23: -0.0280 REMARK 3 L TENSOR REMARK 3 L11: 0.6336 L22: 0.9260 REMARK 3 L33: 1.3038 L12: 0.1420 REMARK 3 L13: 0.1128 L23: 0.4045 REMARK 3 S TENSOR REMARK 3 S11: -0.0330 S12: 0.0973 S13: -0.0861 REMARK 3 S21: -0.1723 S22: -0.0301 S23: 0.0332 REMARK 3 S31: -0.0059 S32: -0.1101 S33: 0.0395 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 63 THROUGH 70 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.7393 -23.6759 -17.0284 REMARK 3 T TENSOR REMARK 3 T11: 0.1176 T22: 0.0940 REMARK 3 T33: 0.0993 T12: -0.0723 REMARK 3 T13: -0.0770 T23: -0.0203 REMARK 3 L TENSOR REMARK 3 L11: 0.6969 L22: 2.0700 REMARK 3 L33: 5.6574 L12: -0.0580 REMARK 3 L13: -0.1253 L23: 2.5530 REMARK 3 S TENSOR REMARK 3 S11: -0.0127 S12: 0.1107 S13: 0.0070 REMARK 3 S21: -0.2697 S22: 0.0861 S23: -0.0011 REMARK 3 S31: -0.2974 S32: 0.2143 S33: -0.0951 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 71 THROUGH 79 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.5497 -37.0698 -22.3730 REMARK 3 T TENSOR REMARK 3 T11: 0.5013 T22: 0.1779 REMARK 3 T33: 0.2509 T12: -0.0637 REMARK 3 T13: -0.0822 T23: -0.0661 REMARK 3 L TENSOR REMARK 3 L11: 3.4320 L22: 5.1583 REMARK 3 L33: 0.9291 L12: 2.7893 REMARK 3 L13: 0.0379 L23: -0.1072 REMARK 3 S TENSOR REMARK 3 S11: 0.0383 S12: 0.0560 S13: -0.4707 REMARK 3 S21: 0.0791 S22: -0.0070 S23: -0.1493 REMARK 3 S31: 0.4564 S32: -0.2286 S33: 0.0081 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 80 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.2145 -30.6818 -16.5129 REMARK 3 T TENSOR REMARK 3 T11: 0.3000 T22: 0.1098 REMARK 3 T33: 0.0925 T12: -0.0691 REMARK 3 T13: -0.0467 T23: -0.0449 REMARK 3 L TENSOR REMARK 3 L11: 0.6800 L22: 1.1244 REMARK 3 L33: 0.8556 L12: 0.0934 REMARK 3 L13: 0.5179 L23: 0.7227 REMARK 3 S TENSOR REMARK 3 S11: 0.1212 S12: 0.2115 S13: -0.2668 REMARK 3 S21: -0.0092 S22: 0.0358 S23: 0.0277 REMARK 3 S31: 0.4528 S32: -0.1822 S33: -0.0775 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 99 THROUGH 109 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.3617 -22.3264 -6.8148 REMARK 3 T TENSOR REMARK 3 T11: -0.0234 T22: 0.2159 REMARK 3 T33: 0.1228 T12: -0.0057 REMARK 3 T13: 0.0300 T23: -0.0438 REMARK 3 L TENSOR REMARK 3 L11: 2.4622 L22: 1.5891 REMARK 3 L33: 2.7552 L12: -0.5072 REMARK 3 L13: -0.9654 L23: 0.3802 REMARK 3 S TENSOR REMARK 3 S11: 0.0732 S12: 0.1848 S13: -0.1002 REMARK 3 S21: -0.1239 S22: 0.0059 S23: -0.1257 REMARK 3 S31: 0.0107 S32: 0.0426 S33: -0.0606 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 110 THROUGH 124 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.1981 -35.2220 -14.1373 REMARK 3 T TENSOR REMARK 3 T11: 0.4016 T22: 0.1650 REMARK 3 T33: 0.1787 T12: 0.0159 REMARK 3 T13: -0.0465 T23: -0.0839 REMARK 3 L TENSOR REMARK 3 L11: 3.9099 L22: 2.3750 REMARK 3 L33: 0.4798 L12: 1.1124 REMARK 3 L13: -0.3533 L23: -0.0862 REMARK 3 S TENSOR REMARK 3 S11: -0.0356 S12: 0.4450 S13: -0.5796 REMARK 3 S21: -0.2966 S22: 0.0621 S23: -0.1498 REMARK 3 S31: 0.6028 S32: -0.1598 S33: 0.0199 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 125 THROUGH 141 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.8520 -15.1381 -10.5943 REMARK 3 T TENSOR REMARK 3 T11: -0.0274 T22: 0.2487 REMARK 3 T33: 0.1474 T12: 0.1207 REMARK 3 T13: 0.0408 T23: -0.0590 REMARK 3 L TENSOR REMARK 3 L11: 1.5679 L22: 1.8421 REMARK 3 L33: 0.8747 L12: 0.6378 REMARK 3 L13: -0.1062 L23: -0.2397 REMARK 3 S TENSOR REMARK 3 S11: 0.0568 S12: 0.1366 S13: 0.0768 REMARK 3 S21: -0.2059 S22: -0.2465 S23: -0.0121 REMARK 3 S31: -0.0904 S32: -0.1698 S33: 0.0600 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 142 THROUGH 154 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.5778 -1.9429 -3.6824 REMARK 3 T TENSOR REMARK 3 T11: 0.1907 T22: 0.2898 REMARK 3 T33: 0.2176 T12: -0.1202 REMARK 3 T13: -0.0658 T23: -0.0521 REMARK 3 L TENSOR REMARK 3 L11: 1.4333 L22: 0.5483 REMARK 3 L33: 3.6388 L12: 0.5942 REMARK 3 L13: 2.2505 L23: 1.1151 REMARK 3 S TENSOR REMARK 3 S11: 0.0598 S12: -0.3469 S13: 0.1870 REMARK 3 S21: 0.3023 S22: 0.0718 S23: -0.4480 REMARK 3 S31: -0.3460 S32: 0.3603 S33: -0.1298 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 3 THROUGH 8 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.3106 -33.4816 -10.9824 REMARK 3 T TENSOR REMARK 3 T11: 0.3575 T22: 0.3753 REMARK 3 T33: 0.3550 T12: -0.2590 REMARK 3 T13: -0.1214 T23: 0.1262 REMARK 3 L TENSOR REMARK 3 L11: 3.7479 L22: 5.9579 REMARK 3 L33: 2.2711 L12: 4.1849 REMARK 3 L13: 0.6827 L23: 1.8160 REMARK 3 S TENSOR REMARK 3 S11: 0.4891 S12: -0.8874 S13: -0.6722 REMARK 3 S21: 0.7071 S22: -0.4760 S23: -0.7320 REMARK 3 S31: 0.4027 S32: 0.0030 S33: -0.0239 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 9 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.9344 -24.0455 -24.7693 REMARK 3 T TENSOR REMARK 3 T11: 0.2381 T22: 0.1670 REMARK 3 T33: 0.2783 T12: -0.1465 REMARK 3 T13: -0.0298 T23: -0.0083 REMARK 3 L TENSOR REMARK 3 L11: 1.8601 L22: 2.0114 REMARK 3 L33: 0.7012 L12: 0.3332 REMARK 3 L13: 0.6684 L23: 0.3752 REMARK 3 S TENSOR REMARK 3 S11: 0.0693 S12: -0.0785 S13: -0.2133 REMARK 3 S21: -0.0759 S22: 0.0850 S23: 0.1038 REMARK 3 S31: 0.3198 S32: -0.2062 S33: -0.0638 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 28 THROUGH 41 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.4072 -11.3295 -23.0253 REMARK 3 T TENSOR REMARK 3 T11: -0.0055 T22: 0.1194 REMARK 3 T33: 0.1324 T12: -0.0436 REMARK 3 T13: -0.0142 T23: -0.0316 REMARK 3 L TENSOR REMARK 3 L11: 0.8967 L22: 0.9572 REMARK 3 L33: 1.6502 L12: -0.6572 REMARK 3 L13: 0.4877 L23: -1.1700 REMARK 3 S TENSOR REMARK 3 S11: 0.1145 S12: -0.0517 S13: -0.0869 REMARK 3 S21: -0.1117 S22: 0.0194 S23: -0.0107 REMARK 3 S31: 0.0338 S32: 0.1764 S33: -0.0753 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 42 THROUGH 50 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.5979 -0.9781 -39.9432 REMARK 3 T TENSOR REMARK 3 T11: 0.3644 T22: 0.2464 REMARK 3 T33: 0.2429 T12: 0.0979 REMARK 3 T13: -0.0719 T23: 0.0287 REMARK 3 L TENSOR REMARK 3 L11: 4.1773 L22: 1.0930 REMARK 3 L33: 7.2334 L12: -2.1230 REMARK 3 L13: 1.1336 L23: -0.2642 REMARK 3 S TENSOR REMARK 3 S11: -0.0961 S12: 0.3256 S13: 0.4686 REMARK 3 S21: -0.5163 S22: -0.0076 S23: -0.0707 REMARK 3 S31: -0.5381 S32: 0.2970 S33: 0.1033 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 51 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.8732 -9.1625 -30.3769 REMARK 3 T TENSOR REMARK 3 T11: 0.1879 T22: 0.0598 REMARK 3 T33: 0.0192 T12: 0.0744 REMARK 3 T13: -0.1411 T23: 0.0087 REMARK 3 L TENSOR REMARK 3 L11: 0.8487 L22: 0.7951 REMARK 3 L33: 0.8915 L12: -0.3075 REMARK 3 L13: 0.6119 L23: -0.6623 REMARK 3 S TENSOR REMARK 3 S11: -0.0014 S12: 0.2088 S13: 0.0965 REMARK 3 S21: -0.2128 S22: -0.0539 S23: 0.1153 REMARK 3 S31: -0.0155 S32: 0.0950 S33: -0.0023 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 63 THROUGH 70 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.6608 -12.3192 -22.5003 REMARK 3 T TENSOR REMARK 3 T11: 0.0806 T22: 0.0776 REMARK 3 T33: 0.0284 T12: 0.0413 REMARK 3 T13: -0.0937 T23: 0.0327 REMARK 3 L TENSOR REMARK 3 L11: 5.1586 L22: 1.2115 REMARK 3 L33: 4.8069 L12: -1.0188 REMARK 3 L13: 3.7707 L23: -1.1223 REMARK 3 S TENSOR REMARK 3 S11: 0.1544 S12: 0.1166 S13: -0.0953 REMARK 3 S21: -0.2650 S22: -0.0165 S23: 0.2293 REMARK 3 S31: 0.0907 S32: -0.2664 S33: -0.1890 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 71 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.8365 0.5008 -28.3002 REMARK 3 T TENSOR REMARK 3 T11: 0.5559 T22: 0.0739 REMARK 3 T33: 0.1375 T12: 0.0391 REMARK 3 T13: -0.0479 T23: 0.1140 REMARK 3 L TENSOR REMARK 3 L11: 1.8841 L22: 2.3913 REMARK 3 L33: 2.2986 L12: -0.0554 REMARK 3 L13: 0.1600 L23: -1.2605 REMARK 3 S TENSOR REMARK 3 S11: -0.0552 S12: 0.2145 S13: 0.3928 REMARK 3 S21: -0.2594 S22: -0.0604 S23: -0.1739 REMARK 3 S31: -0.5345 S32: 0.1836 S33: 0.3263 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 90 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.2017 -11.6562 -18.4289 REMARK 3 T TENSOR REMARK 3 T11: -0.0106 T22: 0.1239 REMARK 3 T33: 0.0609 T12: 0.1503 REMARK 3 T13: -0.1217 T23: 0.0128 REMARK 3 L TENSOR REMARK 3 L11: 1.6375 L22: 1.7766 REMARK 3 L33: 1.1566 L12: 0.5452 REMARK 3 L13: -0.0679 L23: -0.4473 REMARK 3 S TENSOR REMARK 3 S11: 0.0242 S12: 0.2054 S13: 0.1671 REMARK 3 S21: -0.1941 S22: -0.0081 S23: 0.3000 REMARK 3 S31: -0.0753 S32: -0.1924 S33: -0.0680 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 99 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.6895 -8.5131 -14.6508 REMARK 3 T TENSOR REMARK 3 T11: 0.0588 T22: 0.1551 REMARK 3 T33: 0.0974 T12: 0.0844 REMARK 3 T13: -0.0737 T23: 0.0489 REMARK 3 L TENSOR REMARK 3 L11: 1.8390 L22: 1.1262 REMARK 3 L33: 1.5734 L12: -0.1438 REMARK 3 L13: 0.5421 L23: -0.5162 REMARK 3 S TENSOR REMARK 3 S11: -0.0024 S12: 0.2173 S13: 0.1573 REMARK 3 S21: -0.2372 S22: -0.0028 S23: 0.2189 REMARK 3 S31: -0.2842 S32: -0.1237 S33: -0.0571 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 116 THROUGH 141 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.2785 -13.4045 -13.1110 REMARK 3 T TENSOR REMARK 3 T11: 0.0929 T22: 0.2021 REMARK 3 T33: 0.1759 T12: 0.1909 REMARK 3 T13: -0.0942 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.6863 L22: 0.5041 REMARK 3 L33: 0.2248 L12: 0.3409 REMARK 3 L13: 0.1490 L23: -0.1716 REMARK 3 S TENSOR REMARK 3 S11: -0.0172 S12: 0.0101 S13: -0.0470 REMARK 3 S21: -0.1591 S22: -0.1286 S23: -0.0428 REMARK 3 S31: -0.1124 S32: -0.0235 S33: 0.0084 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 142 THROUGH 154 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.3093 -31.3206 1.4859 REMARK 3 T TENSOR REMARK 3 T11: 0.1896 T22: 0.2636 REMARK 3 T33: 0.2378 T12: -0.1208 REMARK 3 T13: 0.0038 T23: -0.0235 REMARK 3 L TENSOR REMARK 3 L11: 1.4292 L22: 0.6173 REMARK 3 L33: 2.4346 L12: -0.0368 REMARK 3 L13: -1.4567 L23: -0.7259 REMARK 3 S TENSOR REMARK 3 S11: -0.1734 S12: -0.1346 S13: -0.2445 REMARK 3 S21: 0.0809 S22: -0.1129 S23: 0.2721 REMARK 3 S31: 0.5026 S32: -0.2397 S33: 0.2503 REMARK 3 TLS GROUP : 22 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 3 THROUGH 8 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.7134 -4.2239 -24.0618 REMARK 3 T TENSOR REMARK 3 T11: 0.4376 T22: 0.3268 REMARK 3 T33: 0.3065 T12: -0.2904 REMARK 3 T13: 0.1124 T23: 0.0086 REMARK 3 L TENSOR REMARK 3 L11: 6.1907 L22: 5.7014 REMARK 3 L33: 2.4478 L12: 3.2284 REMARK 3 L13: -3.0595 L23: -3.4754 REMARK 3 S TENSOR REMARK 3 S11: 0.4059 S12: -0.6185 S13: 0.2733 REMARK 3 S21: 0.6980 S22: -0.3593 S23: 0.0185 REMARK 3 S31: -0.4499 S32: 0.3231 S33: -0.0756 REMARK 3 TLS GROUP : 23 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 9 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.3584 -13.1600 -36.4570 REMARK 3 T TENSOR REMARK 3 T11: 0.6297 T22: 0.3656 REMARK 3 T33: 0.1714 T12: -0.0798 REMARK 3 T13: 0.0476 T23: 0.0034 REMARK 3 L TENSOR REMARK 3 L11: 3.7488 L22: 0.5066 REMARK 3 L33: 3.6859 L12: -0.1191 REMARK 3 L13: -1.7430 L23: 0.0072 REMARK 3 S TENSOR REMARK 3 S11: -0.2712 S12: 0.8195 S13: 0.0745 REMARK 3 S21: -0.8184 S22: 0.1891 S23: -0.0190 REMARK 3 S31: -0.4390 S32: 0.3868 S33: 0.0649 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8GAJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAR-23. REMARK 100 THE DEPOSITION ID IS D_1000270152. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUL-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16463 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.430 REMARK 200 RESOLUTION RANGE LOW (A) : 47.750 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 11.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 23.2700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.43 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.52 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.025 M TRIS PH 8.5, 100 MM NACL, 0.05 REMARK 280 M MES PH 5.8, 35% MPD, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.47500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.16500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.91500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.16500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.47500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.91500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 155 REMARK 465 LYS A 156 REMARK 465 GLY A 157 REMARK 465 LYS A 158 REMARK 465 ARG A 159 REMARK 465 GLY B 1 REMARK 465 SER B 2 REMARK 465 ASP C 155 REMARK 465 LYS C 156 REMARK 465 GLY C 157 REMARK 465 LYS C 158 REMARK 465 ARG C 159 REMARK 465 GLY D 1 REMARK 465 SER D 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 83 CG CD CE NZ REMARK 470 LYS A 91 CG CD CE NZ REMARK 470 LYS A 137 CG CD CE NZ REMARK 470 LYS B 3 CG CD CE NZ REMARK 470 LYS B 4 CG CD CE NZ REMARK 470 ASP C 119 CG OD1 OD2 REMARK 470 LYS C 137 CE NZ REMARK 470 LYS D 3 CG CD CE NZ REMARK 470 LYS D 4 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 134 145.20 -170.55 REMARK 500 REMARK 500 REMARK: NULL DBREF1 8GAJ A 28 159 UNP A0A6D0DFJ5_ECOLX DBREF2 8GAJ A A0A6D0DFJ5 28 159 DBREF 8GAJ B 1 21 UNP P55788 THAN_PODMA 1 21 DBREF1 8GAJ C 28 159 UNP A0A6D0DFJ5_ECOLX DBREF2 8GAJ C A0A6D0DFJ5 28 159 DBREF 8GAJ D 1 21 UNP P55788 THAN_PODMA 1 21 SEQRES 1 A 132 VAL THR GLY ASP THR ASP GLN PRO ILE HIS ILE GLU SER SEQRES 2 A 132 ASP GLN GLN SER LEU ASP MET GLN GLY ASN VAL VAL THR SEQRES 3 A 132 PHE THR GLY ASN VAL ILE VAL THR GLN GLY THR ILE LYS SEQRES 4 A 132 ILE ASN ALA ASP LYS VAL VAL VAL THR ARG PRO GLY GLY SEQRES 5 A 132 GLU GLN GLY LYS GLU VAL ILE ASP GLY TYR GLY LYS PRO SEQRES 6 A 132 ALA THR PHE TYR GLN MET GLN ASP ASN GLY LYS PRO VAL SEQRES 7 A 132 GLU GLY HIS ALA SER GLN MET HIS TYR GLU LEU ALA LYS SEQRES 8 A 132 ASP PHE VAL VAL LEU THR GLY ASN ALA TYR LEU GLN GLN SEQRES 9 A 132 VAL ASP SER ASN ILE LYS GLY ASP LYS ILE THR TYR LEU SEQRES 10 A 132 VAL LYS GLU GLN LYS MET GLN ALA PHE SER ASP LYS GLY SEQRES 11 A 132 LYS ARG SEQRES 1 B 21 GLY SER LYS LYS PRO VAL PRO ILE ILE TYR CYS ASN ARG SEQRES 2 B 21 ARG THR GLY LYS CYS GLN ARG MET SEQRES 1 C 132 VAL THR GLY ASP THR ASP GLN PRO ILE HIS ILE GLU SER SEQRES 2 C 132 ASP GLN GLN SER LEU ASP MET GLN GLY ASN VAL VAL THR SEQRES 3 C 132 PHE THR GLY ASN VAL ILE VAL THR GLN GLY THR ILE LYS SEQRES 4 C 132 ILE ASN ALA ASP LYS VAL VAL VAL THR ARG PRO GLY GLY SEQRES 5 C 132 GLU GLN GLY LYS GLU VAL ILE ASP GLY TYR GLY LYS PRO SEQRES 6 C 132 ALA THR PHE TYR GLN MET GLN ASP ASN GLY LYS PRO VAL SEQRES 7 C 132 GLU GLY HIS ALA SER GLN MET HIS TYR GLU LEU ALA LYS SEQRES 8 C 132 ASP PHE VAL VAL LEU THR GLY ASN ALA TYR LEU GLN GLN SEQRES 9 C 132 VAL ASP SER ASN ILE LYS GLY ASP LYS ILE THR TYR LEU SEQRES 10 C 132 VAL LYS GLU GLN LYS MET GLN ALA PHE SER ASP LYS GLY SEQRES 11 C 132 LYS ARG SEQRES 1 D 21 GLY SER LYS LYS PRO VAL PRO ILE ILE TYR CYS ASN ARG SEQRES 2 D 21 ARG THR GLY LYS CYS GLN ARG MET FORMUL 5 HOH *169(H2 O) HELIX 1 AA1 GLY A 30 GLN A 34 5 5 HELIX 2 AA2 PRO A 77 GLU A 80 5 4 HELIX 3 AA3 GLY C 30 GLN C 34 5 5 HELIX 4 AA4 PRO C 77 GLU C 80 5 4 SHEET 1 AA112 GLN A 42 LEU A 45 0 SHEET 2 AA112 VAL A 51 GLN A 62 -1 O THR A 53 N SER A 44 SHEET 3 AA112 ILE A 65 THR A 75 -1 O VAL A 72 N PHE A 54 SHEET 4 AA112 VAL A 85 MET A 98 -1 O TYR A 89 N LYS A 71 SHEET 5 AA112 PRO A 104 GLU A 115 -1 O ALA A 109 N ALA A 93 SHEET 6 AA112 PHE A 120 LEU A 144 -1 O GLN A 130 N GLU A 106 SHEET 7 AA112 PHE C 120 LEU C 144 -1 O ILE C 141 N LEU A 123 SHEET 8 AA112 PRO C 104 GLU C 115 -1 N GLU C 106 O GLN C 130 SHEET 9 AA112 VAL C 85 MET C 98 -1 N GLN C 97 O VAL C 105 SHEET 10 AA112 ILE C 65 THR C 75 -1 N THR C 75 O VAL C 85 SHEET 11 AA112 VAL C 51 GLN C 62 -1 N PHE C 54 O VAL C 72 SHEET 12 AA112 GLN C 42 LEU C 45 -1 N SER C 44 O THR C 53 SHEET 1 AA216 CYS B 18 ARG B 20 0 SHEET 2 AA216 ILE B 8 ASN B 12 -1 N TYR B 10 O GLN B 19 SHEET 3 AA216 ILE A 36 SER A 40 1 N ILE A 36 O ILE B 9 SHEET 4 AA216 VAL A 51 GLN A 62 -1 O THR A 61 N HIS A 37 SHEET 5 AA216 ILE A 65 THR A 75 -1 O VAL A 72 N PHE A 54 SHEET 6 AA216 VAL A 85 MET A 98 -1 O TYR A 89 N LYS A 71 SHEET 7 AA216 PRO A 104 GLU A 115 -1 O ALA A 109 N ALA A 93 SHEET 8 AA216 PHE A 120 LEU A 144 -1 O GLN A 130 N GLU A 106 SHEET 9 AA216 PHE C 120 LEU C 144 -1 O ILE C 141 N LEU A 123 SHEET 10 AA216 PRO C 104 GLU C 115 -1 N GLU C 106 O GLN C 130 SHEET 11 AA216 VAL C 85 MET C 98 -1 N GLN C 97 O VAL C 105 SHEET 12 AA216 ILE C 65 THR C 75 -1 N THR C 75 O VAL C 85 SHEET 13 AA216 VAL C 51 GLN C 62 -1 N PHE C 54 O VAL C 72 SHEET 14 AA216 ILE C 36 SER C 40 -1 N HIS C 37 O THR C 61 SHEET 15 AA216 ILE D 8 ASN D 12 1 O ILE D 9 N ILE C 36 SHEET 16 AA216 CYS D 18 ARG D 20 -1 O GLN D 19 N TYR D 10 SSBOND 1 CYS B 11 CYS B 18 1555 1555 2.04 SSBOND 2 CYS D 11 CYS D 18 1555 1555 2.04 CISPEP 1 LYS A 91 PRO A 92 0 -6.00 CISPEP 2 LYS C 91 PRO C 92 0 -4.57 CRYST1 44.950 61.830 150.330 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022247 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016173 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006652 0.00000