HEADER DE NOVO PROTEIN 23-FEB-23 8GAQ TITLE C5HR2_4R: EXTENDABLE REPEAT PROTEIN PENTAMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: C5HR2_4R; COMPND 3 CHAIN: A, C, E, G, I; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS OLIGOMER, REPEAT PROTEIN, DE NOVO PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR N.P.BETHEL,A.J.BORST REVDAT 3 20-DEC-23 8GAQ 1 JRNL REVDAT 2 20-SEP-23 8GAQ 1 JRNL REVDAT 1 30-AUG-23 8GAQ 0 JRNL AUTH N.P.BETHEL,A.J.BORST,F.PARMEGGIANI,M.J.BICK,T.J.BRUNETTE, JRNL AUTH 2 H.NGUYEN,A.KANG,A.K.BERA,L.CARTER,M.C.MIRANDA,R.D.KIBLER, JRNL AUTH 3 M.LAMB,X.LI,B.SANKARAN,D.BAKER JRNL TITL PRECISELY PATTERNED NANOFIBRES MADE FROM EXTENDABLE PROTEIN JRNL TITL 2 MULTIPLEXES. JRNL REF NAT.CHEM. V. 15 1664 2023 JRNL REFN ESSN 1755-4349 JRNL PMID 37667012 JRNL DOI 10.1038/S41557-023-01314-X REMARK 2 REMARK 2 RESOLUTION. 3.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.730 REMARK 3 NUMBER OF PARTICLES : 42938 REMARK 3 CTF CORRECTION METHOD : NONE REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8GAQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-FEB-23. REMARK 100 THE DEPOSITION ID IS D_1000272470. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : C5HR2_4R REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS GLACIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, E, G, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 LYS A 148 REMARK 465 GLU A 149 REMARK 465 GLY A 150 REMARK 465 SER A 151 REMARK 465 TRP A 152 REMARK 465 LEU A 153 REMARK 465 GLU A 154 REMARK 465 HIS A 155 REMARK 465 HIS A 156 REMARK 465 HIS A 157 REMARK 465 HIS A 158 REMARK 465 HIS A 159 REMARK 465 HIS A 160 REMARK 465 MET C 148 REMARK 465 LYS C 296 REMARK 465 GLU C 297 REMARK 465 GLY C 298 REMARK 465 SER C 299 REMARK 465 TRP C 300 REMARK 465 LEU C 301 REMARK 465 GLU C 302 REMARK 465 HIS C 303 REMARK 465 HIS C 304 REMARK 465 HIS C 305 REMARK 465 HIS C 306 REMARK 465 HIS C 307 REMARK 465 HIS C 308 REMARK 465 MET E 296 REMARK 465 LYS E 444 REMARK 465 GLU E 445 REMARK 465 GLY E 446 REMARK 465 SER E 447 REMARK 465 TRP E 448 REMARK 465 LEU E 449 REMARK 465 GLU E 450 REMARK 465 HIS E 451 REMARK 465 HIS E 452 REMARK 465 HIS E 453 REMARK 465 HIS E 454 REMARK 465 HIS E 455 REMARK 465 HIS E 456 REMARK 465 MET G 444 REMARK 465 LYS G 592 REMARK 465 GLU G 593 REMARK 465 GLY G 594 REMARK 465 SER G 595 REMARK 465 TRP G 596 REMARK 465 LEU G 597 REMARK 465 GLU G 598 REMARK 465 HIS G 599 REMARK 465 HIS G 600 REMARK 465 HIS G 601 REMARK 465 HIS G 602 REMARK 465 HIS G 603 REMARK 465 HIS G 604 REMARK 465 MET I 592 REMARK 465 LYS I 740 REMARK 465 GLU I 741 REMARK 465 GLY I 742 REMARK 465 SER I 743 REMARK 465 TRP I 744 REMARK 465 LEU I 745 REMARK 465 GLU I 746 REMARK 465 HIS I 747 REMARK 465 HIS I 748 REMARK 465 HIS I 749 REMARK 465 HIS I 750 REMARK 465 HIS I 751 REMARK 465 HIS I 752 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 16 67.27 64.07 REMARK 500 ASP E 312 65.09 61.37 REMARK 500 ASP E 364 87.44 -157.93 REMARK 500 ASP G 460 67.22 60.38 REMARK 500 ASP G 478 89.00 -156.10 REMARK 500 ASP G 512 88.05 -160.14 REMARK 500 ASP I 608 60.73 38.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-29904 RELATED DB: EMDB REMARK 900 C5HR2_4R: EXTENDABLE REPEAT PROTEIN PENTAMER DBREF 8GAQ A 0 160 PDB 8GAQ 8GAQ 0 160 DBREF 8GAQ C 148 308 PDB 8GAQ 8GAQ 148 308 DBREF 8GAQ E 296 456 PDB 8GAQ 8GAQ 296 456 DBREF 8GAQ G 444 604 PDB 8GAQ 8GAQ 444 604 DBREF 8GAQ I 592 752 PDB 8GAQ 8GAQ 592 752 SEQRES 1 A 161 MET VAL GLU GLU LEU LYS ARG LYS LEU ARG GLN ALA LYS SEQRES 2 A 161 GLU ASP GLY ASP GLU GLU LEU LEU GLU ARG VAL LYS ASN SEQRES 3 A 161 GLU MET LEU LEU LEU ALA VAL VAL ASP PRO ARG VAL LEU SEQRES 4 A 161 VAL GLU VAL LEU ASN THR ALA LYS GLU LEU GLY ASP GLU SEQRES 5 A 161 GLU MET TYR LYS LYS VAL LYS GLY ILE MET LEU ARG LEU SEQRES 6 A 161 ALA VAL VAL ASP PRO ARG VAL LEU VAL LEU VAL LEU GLU SEQRES 7 A 161 LEU ALA GLU ALA LEU GLY ASP GLU GLU MET LYS GLU LYS SEQRES 8 A 161 VAL LYS ASN ILE MET LEU LEU LEU ALA VAL VAL ASP PRO SEQRES 9 A 161 ARG VAL LEU VAL LEU VAL LEU GLU LEU ALA GLU GLU LEU SEQRES 10 A 161 GLY ASP GLU GLU MET LYS LYS GLU VAL GLU GLU ILE LEU SEQRES 11 A 161 ASP LYS LEU ALA GLU VAL ASP PRO ARG VAL ALA VAL LEU SEQRES 12 A 161 LYS GLU VAL ALA LYS LYS GLU GLY SER TRP LEU GLU HIS SEQRES 13 A 161 HIS HIS HIS HIS HIS SEQRES 1 C 161 MET VAL GLU GLU LEU LYS ARG LYS LEU ARG GLN ALA LYS SEQRES 2 C 161 GLU ASP GLY ASP GLU GLU LEU LEU GLU ARG VAL LYS ASN SEQRES 3 C 161 GLU MET LEU LEU LEU ALA VAL VAL ASP PRO ARG VAL LEU SEQRES 4 C 161 VAL GLU VAL LEU ASN THR ALA LYS GLU LEU GLY ASP GLU SEQRES 5 C 161 GLU MET TYR LYS LYS VAL LYS GLY ILE MET LEU ARG LEU SEQRES 6 C 161 ALA VAL VAL ASP PRO ARG VAL LEU VAL LEU VAL LEU GLU SEQRES 7 C 161 LEU ALA GLU ALA LEU GLY ASP GLU GLU MET LYS GLU LYS SEQRES 8 C 161 VAL LYS ASN ILE MET LEU LEU LEU ALA VAL VAL ASP PRO SEQRES 9 C 161 ARG VAL LEU VAL LEU VAL LEU GLU LEU ALA GLU GLU LEU SEQRES 10 C 161 GLY ASP GLU GLU MET LYS LYS GLU VAL GLU GLU ILE LEU SEQRES 11 C 161 ASP LYS LEU ALA GLU VAL ASP PRO ARG VAL ALA VAL LEU SEQRES 12 C 161 LYS GLU VAL ALA LYS LYS GLU GLY SER TRP LEU GLU HIS SEQRES 13 C 161 HIS HIS HIS HIS HIS SEQRES 1 E 161 MET VAL GLU GLU LEU LYS ARG LYS LEU ARG GLN ALA LYS SEQRES 2 E 161 GLU ASP GLY ASP GLU GLU LEU LEU GLU ARG VAL LYS ASN SEQRES 3 E 161 GLU MET LEU LEU LEU ALA VAL VAL ASP PRO ARG VAL LEU SEQRES 4 E 161 VAL GLU VAL LEU ASN THR ALA LYS GLU LEU GLY ASP GLU SEQRES 5 E 161 GLU MET TYR LYS LYS VAL LYS GLY ILE MET LEU ARG LEU SEQRES 6 E 161 ALA VAL VAL ASP PRO ARG VAL LEU VAL LEU VAL LEU GLU SEQRES 7 E 161 LEU ALA GLU ALA LEU GLY ASP GLU GLU MET LYS GLU LYS SEQRES 8 E 161 VAL LYS ASN ILE MET LEU LEU LEU ALA VAL VAL ASP PRO SEQRES 9 E 161 ARG VAL LEU VAL LEU VAL LEU GLU LEU ALA GLU GLU LEU SEQRES 10 E 161 GLY ASP GLU GLU MET LYS LYS GLU VAL GLU GLU ILE LEU SEQRES 11 E 161 ASP LYS LEU ALA GLU VAL ASP PRO ARG VAL ALA VAL LEU SEQRES 12 E 161 LYS GLU VAL ALA LYS LYS GLU GLY SER TRP LEU GLU HIS SEQRES 13 E 161 HIS HIS HIS HIS HIS SEQRES 1 G 161 MET VAL GLU GLU LEU LYS ARG LYS LEU ARG GLN ALA LYS SEQRES 2 G 161 GLU ASP GLY ASP GLU GLU LEU LEU GLU ARG VAL LYS ASN SEQRES 3 G 161 GLU MET LEU LEU LEU ALA VAL VAL ASP PRO ARG VAL LEU SEQRES 4 G 161 VAL GLU VAL LEU ASN THR ALA LYS GLU LEU GLY ASP GLU SEQRES 5 G 161 GLU MET TYR LYS LYS VAL LYS GLY ILE MET LEU ARG LEU SEQRES 6 G 161 ALA VAL VAL ASP PRO ARG VAL LEU VAL LEU VAL LEU GLU SEQRES 7 G 161 LEU ALA GLU ALA LEU GLY ASP GLU GLU MET LYS GLU LYS SEQRES 8 G 161 VAL LYS ASN ILE MET LEU LEU LEU ALA VAL VAL ASP PRO SEQRES 9 G 161 ARG VAL LEU VAL LEU VAL LEU GLU LEU ALA GLU GLU LEU SEQRES 10 G 161 GLY ASP GLU GLU MET LYS LYS GLU VAL GLU GLU ILE LEU SEQRES 11 G 161 ASP LYS LEU ALA GLU VAL ASP PRO ARG VAL ALA VAL LEU SEQRES 12 G 161 LYS GLU VAL ALA LYS LYS GLU GLY SER TRP LEU GLU HIS SEQRES 13 G 161 HIS HIS HIS HIS HIS SEQRES 1 I 161 MET VAL GLU GLU LEU LYS ARG LYS LEU ARG GLN ALA LYS SEQRES 2 I 161 GLU ASP GLY ASP GLU GLU LEU LEU GLU ARG VAL LYS ASN SEQRES 3 I 161 GLU MET LEU LEU LEU ALA VAL VAL ASP PRO ARG VAL LEU SEQRES 4 I 161 VAL GLU VAL LEU ASN THR ALA LYS GLU LEU GLY ASP GLU SEQRES 5 I 161 GLU MET TYR LYS LYS VAL LYS GLY ILE MET LEU ARG LEU SEQRES 6 I 161 ALA VAL VAL ASP PRO ARG VAL LEU VAL LEU VAL LEU GLU SEQRES 7 I 161 LEU ALA GLU ALA LEU GLY ASP GLU GLU MET LYS GLU LYS SEQRES 8 I 161 VAL LYS ASN ILE MET LEU LEU LEU ALA VAL VAL ASP PRO SEQRES 9 I 161 ARG VAL LEU VAL LEU VAL LEU GLU LEU ALA GLU GLU LEU SEQRES 10 I 161 GLY ASP GLU GLU MET LYS LYS GLU VAL GLU GLU ILE LEU SEQRES 11 I 161 ASP LYS LEU ALA GLU VAL ASP PRO ARG VAL ALA VAL LEU SEQRES 12 I 161 LYS GLU VAL ALA LYS LYS GLU GLY SER TRP LEU GLU HIS SEQRES 13 I 161 HIS HIS HIS HIS HIS HELIX 1 AA1 VAL A 1 GLY A 15 1 15 HELIX 2 AA2 ASP A 16 ASP A 34 1 19 HELIX 3 AA3 ASP A 34 LEU A 48 1 15 HELIX 4 AA4 ASP A 50 VAL A 66 1 17 HELIX 5 AA5 ARG A 70 GLY A 83 1 14 HELIX 6 AA6 GLU A 86 ALA A 99 1 14 HELIX 7 AA7 ASP A 102 LEU A 116 1 15 HELIX 8 AA8 ASP A 118 GLU A 134 1 17 HELIX 9 AA9 ASP A 136 ALA A 146 1 11 HELIX 10 AB1 GLU C 150 GLY C 163 1 14 HELIX 11 AB2 ASP C 164 ASP C 182 1 19 HELIX 12 AB3 VAL C 185 GLY C 197 1 13 HELIX 13 AB4 ASP C 198 LEU C 212 1 15 HELIX 14 AB5 ALA C 213 VAL C 215 5 3 HELIX 15 AB6 ASP C 216 GLY C 231 1 16 HELIX 16 AB7 ASP C 232 ALA C 247 1 16 HELIX 17 AB8 ARG C 252 VAL C 255 5 4 HELIX 18 AB9 LEU C 256 LEU C 264 1 9 HELIX 19 AC1 ASP C 266 ALA C 281 1 16 HELIX 20 AC2 ASP C 284 ALA C 294 1 11 HELIX 21 AC3 GLU E 298 GLU E 309 1 12 HELIX 22 AC4 ASP E 312 ASP E 330 1 19 HELIX 23 AC5 VAL E 333 GLY E 345 1 13 HELIX 24 AC6 ASP E 346 VAL E 362 1 17 HELIX 25 AC7 ASP E 364 GLY E 379 1 16 HELIX 26 AC8 GLU E 382 ALA E 395 1 14 HELIX 27 AC9 ARG E 400 VAL E 403 5 4 HELIX 28 AD1 LEU E 404 LEU E 412 1 9 HELIX 29 AD2 ASP E 414 GLU E 430 1 17 HELIX 30 AD3 ASP E 432 ALA E 442 1 11 HELIX 31 AD4 GLU G 446 GLY G 459 1 14 HELIX 32 AD5 ASP G 460 VAL G 477 1 18 HELIX 33 AD6 ASP G 478 ARG G 480 5 3 HELIX 34 AD7 VAL G 481 LEU G 492 1 12 HELIX 35 AD8 ASP G 494 VAL G 510 1 17 HELIX 36 AD9 ASP G 512 GLY G 527 1 16 HELIX 37 AE1 GLU G 530 ALA G 543 1 14 HELIX 38 AE2 ARG G 548 VAL G 551 5 4 HELIX 39 AE3 LEU G 552 LEU G 560 1 9 HELIX 40 AE4 ASP G 562 GLU G 578 1 17 HELIX 41 AE5 ASP G 580 ALA G 590 1 11 HELIX 42 AE6 GLU I 594 GLY I 607 1 14 HELIX 43 AE7 ASP I 608 ASP I 626 1 19 HELIX 44 AE8 VAL I 629 LEU I 640 1 12 HELIX 45 AE9 ASP I 642 VAL I 658 1 17 HELIX 46 AF1 ASP I 660 GLY I 675 1 16 HELIX 47 AF2 GLU I 678 ALA I 691 1 14 HELIX 48 AF3 ARG I 696 LEU I 708 1 13 HELIX 49 AF4 ASP I 710 GLU I 726 1 17 HELIX 50 AF5 ASP I 728 ALA I 738 1 11 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000