HEADER VIRAL PROTEIN/IMMUNE SYSTEM 23-FEB-23 8GAT TITLE STRUCTURE OF HUMAN NDS.1 FAB AND 1G01 FAB IN COMPLEX WITH INFLUENZA TITLE 2 VIRUS NEURAMINIDASE FROM A/INDIANA/10/2011 (H3N2V), BASED ON TITLE 3 CONSENSUS CRYO-EM MAP WITH ONLY FAB 1G01 RESOLVED COMPND MOL_ID: 1; COMPND 2 MOLECULE: VASODILATOR-STIMULATED PHOSPHOPROTEIN, NEURAMINIDASE COMPND 3 CHIMERA; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: VASP; COMPND 6 EC: 3.2.1.18; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: FAB 1G01, HEAVY CHAIN; COMPND 10 CHAIN: M; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: FAB 1G01, LIGHT CHAIN; COMPND 14 CHAIN: N; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS, INFLUENZA A VIRUS SOURCE 3 (A/INDIANA/10/2011(H3N2)); SOURCE 4 ORGANISM_COMMON: HUMAN; SOURCE 5 ORGANISM_TAXID: 9606, 1111139; SOURCE 6 STRAIN: A/INDIANA/10/2011(H3N2); SOURCE 7 GENE: VASP, NA, L998_47825GPNA; SOURCE 8 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 9 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM_CELL_LINE: EXPI293; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 17 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 19 EXPRESSION_SYSTEM_CELL_LINE: EXPI293; SOURCE 20 MOL_ID: 3; SOURCE 21 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 22 ORGANISM_COMMON: HUMAN; SOURCE 23 ORGANISM_TAXID: 9606; SOURCE 24 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 25 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 26 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 27 EXPRESSION_SYSTEM_CELL_LINE: EXPI293 KEYWDS NEURAMINIDASE, ANTIBODY, INFLUENZA, VIRAL PROTEIN-IMMUNE SYSTEM KEYWDS 2 COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR Y.TSYBOVSKY,J.LEDERHOFER,P.D.KWONG,M.KANEKIYO REVDAT 4 24-APR-24 8GAT 1 REMARK REVDAT 3 27-MAR-24 8GAT 1 JRNL REVDAT 2 13-MAR-24 8GAT 1 JRNL REVDAT 1 28-FEB-24 8GAT 0 JRNL AUTH J.LEDERHOFER,Y.TSYBOVSKY,L.NGUYEN,J.E.RAAB,A.CREANGA, JRNL AUTH 2 T.STEPHENS,R.A.GILLESPIE,H.Z.SYEDA,B.E.FISHER,M.SKERTIC, JRNL AUTH 3 C.YAP,A.J.SCHAUB,R.RAWI,P.D.KWONG,B.S.GRAHAM,A.B.MCDERMOTT, JRNL AUTH 4 S.F.ANDREWS,N.P.KING,M.KANEKIYO JRNL TITL PROTECTIVE HUMAN MONOCLONAL ANTIBODIES TARGET CONSERVED JRNL TITL 2 SITES OF VULNERABILITY ON THE UNDERSIDE OF INFLUENZA VIRUS JRNL TITL 3 NEURAMINIDASE. JRNL REF IMMUNITY V. 57 574 2024 JRNL REFN ISSN 1074-7613 JRNL PMID 38430907 JRNL DOI 10.1016/J.IMMUNI.2024.02.003 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : SERIALEM REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : BACKBONE TRACE REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.000 REMARK 3 NUMBER OF PARTICLES : 62699 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8GAT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-FEB-23. REMARK 100 THE DEPOSITION ID IS D_1000272248. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : INFLUENZA VIRUS NEURAMINIDASE REMARK 245 FROM A/INDIANA/10/2011 (H3N2V) REMARK 245 IN COMPLEX WITH FABS NDS.1 AND REMARK 245 1G01 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.15 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 3000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 4000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 CYCLIC POINT SYMMETRY (SCHOENFLIES SYMBOL = C4). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, M, N REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 355.20001 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 355.20001 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 355.20000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 355.20001 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 4 REMARK 465 GLU A 5 REMARK 465 PHE A 6 REMARK 465 GLY A 7 REMARK 465 LEU A 8 REMARK 465 SER A 9 REMARK 465 TRP A 10 REMARK 465 ILE A 11 REMARK 465 PHE A 12 REMARK 465 LEU A 13 REMARK 465 ALA A 14 REMARK 465 ALA A 15 REMARK 465 ILE A 16 REMARK 465 LEU A 17 REMARK 465 LYS A 18 REMARK 465 GLY A 19 REMARK 465 VAL A 20 REMARK 465 GLN A 21 REMARK 465 CYS A 22 REMARK 465 ALA A 23 REMARK 465 ASP A 24 REMARK 465 PRO A 25 REMARK 465 HIS A 26 REMARK 465 HIS A 27 REMARK 465 HIS A 28 REMARK 465 HIS A 29 REMARK 465 HIS A 30 REMARK 465 HIS A 31 REMARK 465 SER A 32 REMARK 465 SER A 33 REMARK 465 SER A 34 REMARK 465 ASP A 35 REMARK 465 TYR A 36 REMARK 465 SER A 37 REMARK 465 ASP A 38 REMARK 465 LEU A 39 REMARK 465 GLN A 40 REMARK 465 ARG A 41 REMARK 465 VAL A 42 REMARK 465 LYS A 43 REMARK 465 GLN A 44 REMARK 465 GLU A 45 REMARK 465 LEU A 46 REMARK 465 LEU A 47 REMARK 465 GLU A 48 REMARK 465 GLU A 49 REMARK 465 VAL A 50 REMARK 465 LYS A 51 REMARK 465 LYS A 52 REMARK 465 GLU A 53 REMARK 465 LEU A 54 REMARK 465 GLN A 55 REMARK 465 LYS A 56 REMARK 465 VAL A 57 REMARK 465 LYS A 58 REMARK 465 GLU A 59 REMARK 465 GLU A 60 REMARK 465 ILE A 61 REMARK 465 ILE A 62 REMARK 465 GLU A 63 REMARK 465 ALA A 64 REMARK 465 PHE A 65 REMARK 465 VAL A 66 REMARK 465 GLN A 67 REMARK 465 GLU A 68 REMARK 465 LEU A 69 REMARK 465 ARG A 70 REMARK 465 LYS A 71 REMARK 465 ARG A 72 REMARK 465 GLY A 73 REMARK 465 SER A 74 REMARK 465 LEU A 75 REMARK 465 VAL A 76 REMARK 465 PRO A 77 REMARK 465 ARG A 78 REMARK 465 GLY A 79 REMARK 465 SER A 80 REMARK 465 GLY A 81 REMARK 465 GLY A 82 REMARK 465 ILE A 469 REMARK 465 ASP M 0 REMARK 465 GLU M 1 REMARK 465 SER M 112 REMARK 465 SER M 113 REMARK 465 ALA M 114 REMARK 465 SER M 115 REMARK 465 THR M 116 REMARK 465 LYS M 117 REMARK 465 GLY M 118 REMARK 465 PRO M 119 REMARK 465 SER M 120 REMARK 465 VAL M 121 REMARK 465 PHE M 122 REMARK 465 PRO M 123 REMARK 465 LEU M 124 REMARK 465 ALA M 125 REMARK 465 PRO M 126 REMARK 465 SER M 127 REMARK 465 SER M 128 REMARK 465 LYS M 129 REMARK 465 SER M 130 REMARK 465 THR M 131 REMARK 465 SER M 132 REMARK 465 GLY M 133 REMARK 465 GLY M 134 REMARK 465 THR M 135 REMARK 465 ALA M 136 REMARK 465 ALA M 137 REMARK 465 LEU M 138 REMARK 465 GLY M 139 REMARK 465 CYS M 140 REMARK 465 LEU M 141 REMARK 465 VAL M 142 REMARK 465 LYS M 143 REMARK 465 ASP M 144 REMARK 465 TYR M 145 REMARK 465 PHE M 146 REMARK 465 PRO M 147 REMARK 465 GLU M 148 REMARK 465 PRO M 149 REMARK 465 VAL M 150 REMARK 465 THR M 151 REMARK 465 VAL M 152 REMARK 465 SER M 153 REMARK 465 TRP M 154 REMARK 465 ASN M 155 REMARK 465 SER M 156 REMARK 465 GLY M 157 REMARK 465 ALA M 158 REMARK 465 LEU M 159 REMARK 465 THR M 160 REMARK 465 SER M 161 REMARK 465 GLY M 162 REMARK 465 VAL M 163 REMARK 465 HIS M 164 REMARK 465 THR M 165 REMARK 465 PHE M 166 REMARK 465 PRO M 167 REMARK 465 ALA M 168 REMARK 465 VAL M 169 REMARK 465 LEU M 170 REMARK 465 GLN M 171 REMARK 465 SER M 172 REMARK 465 SER M 173 REMARK 465 GLY M 174 REMARK 465 LEU M 175 REMARK 465 TYR M 176 REMARK 465 SER M 177 REMARK 465 LEU M 178 REMARK 465 SER M 179 REMARK 465 SER M 180 REMARK 465 VAL M 181 REMARK 465 VAL M 182 REMARK 465 THR M 183 REMARK 465 VAL M 184 REMARK 465 PRO M 185 REMARK 465 SER M 186 REMARK 465 SER M 187 REMARK 465 SER M 188 REMARK 465 LEU M 189 REMARK 465 GLY M 190 REMARK 465 THR M 191 REMARK 465 GLN M 192 REMARK 465 THR M 193 REMARK 465 TYR M 194 REMARK 465 ILE M 195 REMARK 465 CYS M 196 REMARK 465 ASN M 197 REMARK 465 VAL M 198 REMARK 465 ASN M 199 REMARK 465 HIS M 200 REMARK 465 LYS M 201 REMARK 465 PRO M 202 REMARK 465 SER M 203 REMARK 465 ASN M 204 REMARK 465 THR M 205 REMARK 465 LYS M 206 REMARK 465 VAL M 207 REMARK 465 ASP M 208 REMARK 465 LYS M 209 REMARK 465 ARG M 210 REMARK 465 VAL M 211 REMARK 465 GLU M 212 REMARK 465 PRO M 213 REMARK 465 LYS M 214 REMARK 465 SER M 215 REMARK 465 CYS M 216 REMARK 465 HIS M 217 REMARK 465 HIS M 218 REMARK 465 HIS M 219 REMARK 465 HIS M 220 REMARK 465 HIS M 221 REMARK 465 HIS M 222 REMARK 465 ASP N 0 REMARK 465 ARG N 108 REMARK 465 THR N 109 REMARK 465 VAL N 110 REMARK 465 ALA N 111 REMARK 465 ALA N 112 REMARK 465 PRO N 113 REMARK 465 SER N 114 REMARK 465 VAL N 115 REMARK 465 PHE N 116 REMARK 465 ILE N 117 REMARK 465 PHE N 118 REMARK 465 PRO N 119 REMARK 465 PRO N 120 REMARK 465 SER N 121 REMARK 465 ASP N 122 REMARK 465 GLU N 123 REMARK 465 GLN N 124 REMARK 465 LEU N 125 REMARK 465 LYS N 126 REMARK 465 SER N 127 REMARK 465 GLY N 128 REMARK 465 THR N 129 REMARK 465 ALA N 130 REMARK 465 SER N 131 REMARK 465 VAL N 132 REMARK 465 VAL N 133 REMARK 465 CYS N 134 REMARK 465 LEU N 135 REMARK 465 LEU N 136 REMARK 465 ASN N 137 REMARK 465 ASN N 138 REMARK 465 PHE N 139 REMARK 465 TYR N 140 REMARK 465 PRO N 141 REMARK 465 ARG N 142 REMARK 465 GLU N 143 REMARK 465 ALA N 144 REMARK 465 LYS N 145 REMARK 465 VAL N 146 REMARK 465 GLN N 147 REMARK 465 TRP N 148 REMARK 465 LYS N 149 REMARK 465 VAL N 150 REMARK 465 ASP N 151 REMARK 465 ASN N 152 REMARK 465 ALA N 153 REMARK 465 LEU N 154 REMARK 465 GLN N 155 REMARK 465 SER N 156 REMARK 465 GLY N 157 REMARK 465 ASN N 158 REMARK 465 SER N 159 REMARK 465 GLN N 160 REMARK 465 GLU N 161 REMARK 465 SER N 162 REMARK 465 VAL N 163 REMARK 465 THR N 164 REMARK 465 GLU N 165 REMARK 465 GLN N 166 REMARK 465 ASP N 167 REMARK 465 SER N 168 REMARK 465 LYS N 169 REMARK 465 ASP N 170 REMARK 465 SER N 171 REMARK 465 THR N 172 REMARK 465 TYR N 173 REMARK 465 SER N 174 REMARK 465 LEU N 175 REMARK 465 SER N 176 REMARK 465 SER N 177 REMARK 465 THR N 178 REMARK 465 LEU N 179 REMARK 465 THR N 180 REMARK 465 LEU N 181 REMARK 465 SER N 182 REMARK 465 LYS N 183 REMARK 465 ALA N 184 REMARK 465 ASP N 185 REMARK 465 TYR N 186 REMARK 465 GLU N 187 REMARK 465 LYS N 188 REMARK 465 HIS N 189 REMARK 465 LYS N 190 REMARK 465 VAL N 191 REMARK 465 TYR N 192 REMARK 465 ALA N 193 REMARK 465 CYS N 194 REMARK 465 GLU N 195 REMARK 465 VAL N 196 REMARK 465 THR N 197 REMARK 465 HIS N 198 REMARK 465 GLN N 199 REMARK 465 GLY N 200 REMARK 465 LEU N 201 REMARK 465 SER N 202 REMARK 465 SER N 203 REMARK 465 PRO N 204 REMARK 465 VAL N 205 REMARK 465 THR N 206 REMARK 465 LYS N 207 REMARK 465 SER N 208 REMARK 465 PHE N 209 REMARK 465 ASN N 210 REMARK 465 ARG N 211 REMARK 465 GLY N 212 REMARK 465 GLU N 213 REMARK 465 CYS N 214 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN M 52 NH2 ARG M 71 2.11 REMARK 500 CG LYS M 28 OD1 ASP M 30 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 119 72.51 58.29 REMARK 500 ASN A 221 -68.74 -103.18 REMARK 500 PHE A 284 128.40 -36.64 REMARK 500 CYS A 318 32.25 -94.25 REMARK 500 GLU A 343 -65.33 -94.27 REMARK 500 LYS A 344 39.49 -140.23 REMARK 500 ASN A 465 49.19 -93.37 REMARK 500 PRO M 14 46.98 -75.38 REMARK 500 LYS M 43 -169.77 -126.05 REMARK 500 ASN M 52 -157.52 -79.28 REMARK 500 ILE M 56 97.66 94.52 REMARK 500 ASN M 73 46.80 -91.48 REMARK 500 SER M 82B 75.72 53.03 REMARK 500 ALA N 51 -10.25 70.47 REMARK 500 SER N 52 -13.84 -141.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-29907 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-29908 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-29909 RELATED DB: EMDB DBREF 8GAT A 32 70 UNP P50552 VASP_HUMAN 337 375 DBREF 8GAT A 83 469 UNP G9LQ08 G9LQ08_9INFA 83 469 DBREF 8GAT M 0 222 PDB 8GAT 8GAT 0 222 DBREF 8GAT N 0 214 PDB 8GAT 8GAT 0 214 SEQADV 8GAT MET A 4 UNP P50552 EXPRESSION TAG SEQADV 8GAT GLU A 5 UNP P50552 EXPRESSION TAG SEQADV 8GAT PHE A 6 UNP P50552 EXPRESSION TAG SEQADV 8GAT GLY A 7 UNP P50552 EXPRESSION TAG SEQADV 8GAT LEU A 8 UNP P50552 EXPRESSION TAG SEQADV 8GAT SER A 9 UNP P50552 EXPRESSION TAG SEQADV 8GAT TRP A 10 UNP P50552 EXPRESSION TAG SEQADV 8GAT ILE A 11 UNP P50552 EXPRESSION TAG SEQADV 8GAT PHE A 12 UNP P50552 EXPRESSION TAG SEQADV 8GAT LEU A 13 UNP P50552 EXPRESSION TAG SEQADV 8GAT ALA A 14 UNP P50552 EXPRESSION TAG SEQADV 8GAT ALA A 15 UNP P50552 EXPRESSION TAG SEQADV 8GAT ILE A 16 UNP P50552 EXPRESSION TAG SEQADV 8GAT LEU A 17 UNP P50552 EXPRESSION TAG SEQADV 8GAT LYS A 18 UNP P50552 EXPRESSION TAG SEQADV 8GAT GLY A 19 UNP P50552 EXPRESSION TAG SEQADV 8GAT VAL A 20 UNP P50552 EXPRESSION TAG SEQADV 8GAT GLN A 21 UNP P50552 EXPRESSION TAG SEQADV 8GAT CYS A 22 UNP P50552 EXPRESSION TAG SEQADV 8GAT ALA A 23 UNP P50552 EXPRESSION TAG SEQADV 8GAT ASP A 24 UNP P50552 EXPRESSION TAG SEQADV 8GAT PRO A 25 UNP P50552 EXPRESSION TAG SEQADV 8GAT HIS A 26 UNP P50552 EXPRESSION TAG SEQADV 8GAT HIS A 27 UNP P50552 EXPRESSION TAG SEQADV 8GAT HIS A 28 UNP P50552 EXPRESSION TAG SEQADV 8GAT HIS A 29 UNP P50552 EXPRESSION TAG SEQADV 8GAT HIS A 30 UNP P50552 EXPRESSION TAG SEQADV 8GAT HIS A 31 UNP P50552 EXPRESSION TAG SEQADV 8GAT LYS A 71 UNP P50552 LINKER SEQADV 8GAT ARG A 72 UNP P50552 LINKER SEQADV 8GAT GLY A 73 UNP P50552 LINKER SEQADV 8GAT SER A 74 UNP P50552 LINKER SEQADV 8GAT LEU A 75 UNP P50552 LINKER SEQADV 8GAT VAL A 76 UNP P50552 LINKER SEQADV 8GAT PRO A 77 UNP P50552 LINKER SEQADV 8GAT ARG A 78 UNP P50552 LINKER SEQADV 8GAT GLY A 79 UNP P50552 LINKER SEQADV 8GAT SER A 80 UNP P50552 LINKER SEQADV 8GAT GLY A 81 UNP P50552 LINKER SEQADV 8GAT GLY A 82 UNP P50552 LINKER SEQRES 1 A 466 MET GLU PHE GLY LEU SER TRP ILE PHE LEU ALA ALA ILE SEQRES 2 A 466 LEU LYS GLY VAL GLN CYS ALA ASP PRO HIS HIS HIS HIS SEQRES 3 A 466 HIS HIS SER SER SER ASP TYR SER ASP LEU GLN ARG VAL SEQRES 4 A 466 LYS GLN GLU LEU LEU GLU GLU VAL LYS LYS GLU LEU GLN SEQRES 5 A 466 LYS VAL LYS GLU GLU ILE ILE GLU ALA PHE VAL GLN GLU SEQRES 6 A 466 LEU ARG LYS ARG GLY SER LEU VAL PRO ARG GLY SER GLY SEQRES 7 A 466 GLY GLU TYR ARG ASN TRP SER LYS PRO GLN CYS ASN ILE SEQRES 8 A 466 THR GLY PHE ALA PRO PHE SER LYS ASP ASN SER ILE ARG SEQRES 9 A 466 LEU SER ALA GLY GLY ASP ILE TRP VAL THR ARG GLU PRO SEQRES 10 A 466 TYR VAL SER CYS ASP PRO ASP LYS CYS TYR GLN PHE ALA SEQRES 11 A 466 LEU GLY GLN GLY THR THR LEU ASN ASN GLY HIS SER ASN SEQRES 12 A 466 ASN THR VAL HIS ASP ARG THR PRO TYR ARG THR LEU LEU SEQRES 13 A 466 MET ASN GLU LEU GLY VAL PRO PHE HIS LEU GLY THR ARG SEQRES 14 A 466 GLN VAL CYS MET ALA TRP SER SER SER SER CYS HIS ASP SEQRES 15 A 466 GLY LYS ALA TRP LEU HIS VAL CYS ILE THR GLY ASN ASP SEQRES 16 A 466 ASN ASN ALA THR ALA SER PHE ILE TYR ASN GLY ARG LEU SEQRES 17 A 466 VAL ASP SER ILE GLY SER TRP SER LYS ASN ILE LEU ARG SEQRES 18 A 466 THR GLN GLU SER GLU CYS VAL CYS ILE ASN GLY THR CYS SEQRES 19 A 466 THR VAL VAL MET THR ASP GLY SER ALA SER GLY LYS ALA SEQRES 20 A 466 ASP THR LYS ILE LEU PHE VAL GLU GLU GLY LYS ILE VAL SEQRES 21 A 466 HIS ILE SER THR LEU SER GLY SER ALA GLN HIS VAL GLU SEQRES 22 A 466 GLU CYS SER CYS TYR PRO ARG PHE PRO GLY VAL ARG CYS SEQRES 23 A 466 VAL CYS ARG ASP ASN TRP LYS GLY SER ASN ARG PRO ILE SEQRES 24 A 466 VAL ASP ILE ASN VAL LYS ASN TYR SER ILE VAL SER SER SEQRES 25 A 466 TYR VAL CYS SER GLY LEU VAL GLY ASP THR PRO ARG LYS SEQRES 26 A 466 SER ASP SER VAL SER SER SER TYR CYS LEU ASP PRO ASN SEQRES 27 A 466 ASN GLU LYS GLY GLY HIS GLY VAL LYS GLY TRP ALA PHE SEQRES 28 A 466 ASP ASP GLY ASN ASP VAL TRP MET GLY ARG THR ILE ASN SEQRES 29 A 466 GLU THR LEU ARG LEU GLY TYR GLU THR PHE LYS VAL ILE SEQRES 30 A 466 GLU GLY TRP SER LYS ALA ASN SER LYS LEU GLN THR ASN SEQRES 31 A 466 ARG GLN VAL ILE VAL GLU LYS GLY ASP ARG SER GLY TYR SEQRES 32 A 466 SER GLY ILE PHE SER VAL GLU GLY LYS SER CYS ILE ASN SEQRES 33 A 466 ARG CYS PHE TYR VAL GLU LEU ILE ARG GLY ARG LYS GLU SEQRES 34 A 466 GLU THR LYS VAL TRP TRP THR SER ASN SER ILE VAL VAL SEQRES 35 A 466 PHE CYS GLY THR SER GLY THR TYR GLY THR GLY SER TRP SEQRES 36 A 466 PRO ASP GLY ALA ASP ILE ASN LEU MET PRO ILE SEQRES 1 M 240 ASP GLU VAL GLN LEU VAL GLU SER GLY GLY ARG ALA LEU SEQRES 2 M 240 ARG PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER SEQRES 3 M 240 GLY PHE LYS PHE ASP ASP TYR ALA MET SER TRP VAL ARG SEQRES 4 M 240 GLN VAL PRO GLY LYS GLY LEU GLU PHE VAL SER GLY LEU SEQRES 5 M 240 ASN TRP ASN GLY ASP ILE THR ALA TYR THR ASP SER VAL SEQRES 6 M 240 LYS GLY ARG PHE THR VAL SER ARG ASP ASN ALA LYS ASN SEQRES 7 M 240 SER LEU TYR LEU HIS ILE ASN SER PRO LYS PRO GLU ASP SEQRES 8 M 240 THR ALA LEU TYR TYR CYS ALA ARG THR SER SER TRP GLY SEQRES 9 M 240 ASP TYR THR ARG GLY PRO GLU PRO LYS ILE THR TRP TYR SEQRES 10 M 240 PHE ASP LEU TRP GLY ARG GLY THR LEU VAL THR VAL SER SEQRES 11 M 240 SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA SEQRES 12 M 240 PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA LEU SEQRES 13 M 240 GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR SEQRES 14 M 240 VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS SEQRES 15 M 240 THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER SEQRES 16 M 240 LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU GLY SEQRES 17 M 240 THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER SEQRES 18 M 240 ASN THR LYS VAL ASP LYS ARG VAL GLU PRO LYS SER CYS SEQRES 19 M 240 HIS HIS HIS HIS HIS HIS SEQRES 1 N 216 ASP ASP ILE GLN LEU THR GLN SER PRO SER PHE LEU SER SEQRES 2 N 216 ALA SER VAL GLY ASP ARG ILE THR ILE THR CYS ARG ALA SEQRES 3 N 216 SER GLN GLY ILE ASP GLY TYR LEU ALA TRP TYR GLN GLN SEQRES 4 N 216 ARG PRO GLY LYS ALA PRO ASN LEU LEU ILE TYR ALA ALA SEQRES 5 N 216 SER LEU LEU GLN SER GLY VAL PRO SER ARG PHE SER GLY SEQRES 6 N 216 SER GLY TYR GLY THR GLU PHE THR LEU THR ILE SER SER SEQRES 7 N 216 LEU GLN PRO GLU ASP PHE ALA THR TYR TYR CYS GLN HIS SEQRES 8 N 216 LEU ASP SER TYR PRO LEU PHE THR PHE GLY PRO GLY THR SEQRES 9 N 216 LYS VAL ASP ILE LYS ARG THR VAL ALA ALA PRO SER VAL SEQRES 10 N 216 PHE ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY SEQRES 11 N 216 THR ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO SEQRES 12 N 216 ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU SEQRES 13 N 216 GLN SER GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SEQRES 14 N 216 SER LYS ASP SER THR TYR SER LEU SER SER THR LEU THR SEQRES 15 N 216 LEU SER LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA SEQRES 16 N 216 CYS GLU VAL THR HIS GLN GLY LEU SER SER PRO VAL THR SEQRES 17 N 216 LYS SER PHE ASN ARG GLY GLU CYS HET NAG A 501 14 HET NAG A 502 14 HET NAG A 503 14 HET NAG A 504 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 4 NAG 4(C8 H15 N O6) HELIX 1 AA1 ASN A 104 SER A 109 1 6 HELIX 2 AA2 ASN A 142 ASN A 146 5 5 HELIX 3 AA3 ASP A 463 MET A 467 5 5 HELIX 4 AA4 ASP M 61 LYS M 64 5 4 SHEET 1 AA1 4 GLY A 96 LYS A 102 0 SHEET 2 AA1 4 ILE A 443 THR A 449 -1 O CYS A 447 N ALA A 98 SHEET 3 AA1 4 ILE A 418 GLU A 425 -1 N ARG A 420 O GLY A 448 SHEET 4 AA1 4 SER A 407 GLU A 413 -1 N VAL A 412 O ASN A 419 SHEET 1 AA2 4 TRP A 115 CYS A 124 0 SHEET 2 AA2 4 CYS A 129 THR A 139 -1 O TYR A 130 N SER A 123 SHEET 3 AA2 4 THR A 157 GLU A 162 -1 O LEU A 159 N ALA A 133 SHEET 4 AA2 4 ARG A 172 MET A 176 -1 O VAL A 174 N LEU A 158 SHEET 1 AA3 4 SER A 179 HIS A 184 0 SHEET 2 AA3 4 TRP A 189 THR A 195 -1 O LEU A 190 N CYS A 183 SHEET 3 AA3 4 THR A 202 TYR A 207 -1 O SER A 204 N CYS A 193 SHEET 4 AA3 4 ARG A 210 GLY A 216 -1 O ARG A 210 N TYR A 207 SHEET 1 AA4 3 LEU A 223 ARG A 224 0 SHEET 2 AA4 3 THR A 236 GLY A 244 -1 O THR A 242 N ARG A 224 SHEET 3 AA4 3 VAL A 231 ILE A 233 -1 N ILE A 233 O THR A 236 SHEET 1 AA5 4 LEU A 223 ARG A 224 0 SHEET 2 AA5 4 THR A 236 GLY A 244 -1 O THR A 242 N ARG A 224 SHEET 3 AA5 4 ALA A 250 GLU A 258 -1 O LEU A 255 N VAL A 239 SHEET 4 AA5 4 LYS A 261 THR A 267 -1 O LYS A 261 N GLU A 258 SHEET 1 AA6 4 GLU A 276 ARG A 283 0 SHEET 2 AA6 4 GLY A 286 ARG A 292 -1 O ARG A 292 N GLU A 276 SHEET 3 AA6 4 PRO A 301 ASN A 306 -1 O VAL A 303 N CYS A 289 SHEET 4 AA6 4 ILE A 312 TYR A 316 -1 O SER A 315 N ILE A 302 SHEET 1 AA7 4 ALA A 353 ASP A 356 0 SHEET 2 AA7 4 ASP A 359 ARG A 364 -1 O TRP A 361 N PHE A 354 SHEET 3 AA7 4 LEU A 372 VAL A 379 -1 O GLU A 375 N ARG A 364 SHEET 4 AA7 4 GLN A 391 ARG A 403 -1 O GLN A 395 N THR A 376 SHEET 1 AA8 2 ARG A 428 GLY A 429 0 SHEET 2 AA8 2 THR A 439 SER A 440 -1 O SER A 440 N ARG A 428 SHEET 1 AA9 4 GLN M 3 SER M 7 0 SHEET 2 AA9 4 LEU M 18 SER M 25 -1 O SER M 21 N SER M 7 SHEET 3 AA9 4 SER M 77 ILE M 82 -1 O LEU M 80 N LEU M 20 SHEET 4 AA9 4 PHE M 67 ASP M 72 -1 N THR M 68 O HIS M 81 SHEET 1 AB1 5 THR M 57 TYR M 59 0 SHEET 2 AB1 5 LEU M 45 LEU M 51 -1 N GLY M 50 O ALA M 58 SHEET 3 AB1 5 ALA M 33 GLN M 39 -1 N ARG M 38 O GLU M 46 SHEET 4 AB1 5 LEU M 89 SER M 96 -1 O TYR M 91 N VAL M 37 SHEET 5 AB1 5 TYR M 100L TRP M 103 -1 O ASP M 101 N ARG M 94 SHEET 1 AB2 5 THR M 57 TYR M 59 0 SHEET 2 AB2 5 LEU M 45 LEU M 51 -1 N GLY M 50 O ALA M 58 SHEET 3 AB2 5 ALA M 33 GLN M 39 -1 N ARG M 38 O GLU M 46 SHEET 4 AB2 5 LEU M 89 SER M 96 -1 O TYR M 91 N VAL M 37 SHEET 5 AB2 5 THR M 107 LEU M 108 -1 O THR M 107 N TYR M 90 SHEET 1 AB3 4 LEU N 4 SER N 7 0 SHEET 2 AB3 4 ILE N 19 ALA N 25 -1 O ARG N 24 N THR N 5 SHEET 3 AB3 4 GLU N 70 ILE N 75 -1 O LEU N 73 N ILE N 21 SHEET 4 AB3 4 PHE N 62 SER N 65 -1 N SER N 65 O THR N 72 SHEET 1 AB4 2 PHE N 10 ALA N 13 0 SHEET 2 AB4 2 LYS N 103 ILE N 106 1 O ASP N 105 N ALA N 13 SHEET 1 AB5 4 LEU N 53 LEU N 54 0 SHEET 2 AB5 4 ASN N 45 TYR N 49 -1 N TYR N 49 O LEU N 53 SHEET 3 AB5 4 ALA N 34 GLN N 38 -1 N GLN N 37 O ASN N 45 SHEET 4 AB5 4 THR N 85 GLN N 89 -1 O TYR N 87 N TYR N 36 SSBOND 1 CYS A 92 CYS A 417 1555 1555 2.03 SSBOND 2 CYS A 124 CYS A 129 1555 1555 2.03 SSBOND 3 CYS A 175 CYS A 193 1555 1555 2.03 SSBOND 4 CYS A 183 CYS A 230 1555 1555 2.03 SSBOND 5 CYS A 232 CYS A 237 1555 1555 2.03 SSBOND 6 CYS A 278 CYS A 291 1555 1555 2.03 SSBOND 7 CYS A 280 CYS A 289 1555 1555 2.03 SSBOND 8 CYS A 318 CYS A 337 1555 1555 2.03 SSBOND 9 CYS A 421 CYS A 447 1555 1555 2.03 SSBOND 10 CYS M 22 CYS M 92 1555 1555 2.04 SSBOND 11 CYS N 23 CYS N 88 1555 1555 2.04 LINK ND2 ASN A 146 C1 NAG A 502 1555 1555 1.44 LINK ND2 ASN A 200 C1 NAG A 501 1555 1555 1.44 LINK ND2 ASN A 234 C1 NAG A 504 1555 1555 1.44 LINK ND2 ASN A 367 C1 NAG A 503 1555 1555 1.44 CISPEP 1 PHE A 284 PRO A 285 0 4.41 CISPEP 2 THR A 325 PRO A 326 0 2.32 CISPEP 3 ARG A 430 LYS A 431 0 9.85 CISPEP 4 SER N 7 PRO N 8 0 -3.98 CISPEP 5 TYR N 94 PRO N 95 0 -4.24 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000