HEADER CHAPERONE 24-FEB-23 8GB3 TITLE STRUCTURE OF THE MYCOBACTERIUM TUBERCULOSIS HSP70 PROTEIN DNAK BOUND TITLE 2 TO THE NUCLEOTIDE EXCHANGE FACTOR GRPE CAVEAT 8GB3 RESIDUES GLY D 184 AND GLY D 186 ARE LINKED TOGETHER IN THE CAVEAT 2 8GB3 MODEL; HOWEVER, THERE ARE RESIDUES BETWEEN THEM IN THE CAVEAT 3 8GB3 DEPOSITED POLYMERIC SEQUENCE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHAPERONE PROTEIN DNAK; COMPND 3 CHAIN: D; COMPND 4 SYNONYM: HSP70,HEAT SHOCK 70 KDA PROTEIN,HEAT SHOCK PROTEIN 70; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PROTEIN GRPE; COMPND 8 CHAIN: E, F; COMPND 9 SYNONYM: HSP-70 COFACTOR; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: DNAK_2, DNAK, E5M05_19850, ERS007703_00955, ERS023446_02581, SOURCE 5 ERS027651_01905, FCN16_12395, SAMEA2682864_01182, SOURCE 6 SAMEA2683035_02658; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 11 ORGANISM_TAXID: 1773; SOURCE 12 GENE: GRPE, E5M05_19845, E5M52_19255, E5M78_19290, ERS007681_03281, SOURCE 13 ERS007703_00954, ERS024276_02384, SAMEA2683035_02659; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HEAT SHOCK PROTEIN 70, NUCLEOTIDE EXCHANGE FACTOR, PROTEIN FOLDING KEYWDS 2 AND REFOLDING, CHAPERONE EXPDTA ELECTRON MICROSCOPY AUTHOR X.XIAO,H.LI REVDAT 3 01-MAY-24 8GB3 1 JRNL REVDAT 2 13-MAR-24 8GB3 1 REMARK REVDAT 1 31-JAN-24 8GB3 0 JRNL AUTH X.XIAO,A.FAY,P.S.MOLINA,A.KOVACH,M.S.GLICKMAN,H.LI JRNL TITL STRUCTURE OF THE M. TUBERCULOSIS DNAK-GRPE COMPLEX REVEALS JRNL TITL 2 HOW KEY DNAK ROLES ARE CONTROLLED. JRNL REF NAT COMMUN V. 15 660 2024 JRNL REFN ESSN 2041-1723 JRNL PMID 38253530 JRNL DOI 10.1038/S41467-024-44933-9 REMARK 2 REMARK 2 RESOLUTION. 3.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, SERIALEM, CRYOSPARC, UCSF REMARK 3 CHIMERAX, CRYOSPARC, CRYOSPARC, REMARK 3 CRYOSPARC, CRYOSPARC, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.700 REMARK 3 NUMBER OF PARTICLES : 240737 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8GB3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-FEB-23. REMARK 100 THE DEPOSITION ID IS D_1000272379. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : BINARY COMPLEX OF DNAK WITH REMARK 245 NUCLEOTIDE EXCHANGE FACTOR GRPE REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 15720 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 BIOQUANTUM (6K X REMARK 245 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1300.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 1800.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 6600.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 105000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET D 1 REMARK 465 ALA D 2 REMARK 465 GLY D 160 REMARK 465 GLU D 161 REMARK 465 GLU D 185 REMARK 465 ALA D 262 REMARK 465 ASP D 263 REMARK 465 LYS D 264 REMARK 465 GLU D 514 REMARK 465 THR D 515 REMARK 465 LEU D 516 REMARK 465 VAL D 517 REMARK 465 TYR D 518 REMARK 465 GLN D 519 REMARK 465 THR D 520 REMARK 465 GLU D 521 REMARK 465 LYS D 522 REMARK 465 PHE D 523 REMARK 465 VAL D 524 REMARK 465 LYS D 525 REMARK 465 GLU D 526 REMARK 465 GLN D 527 REMARK 465 ARG D 528 REMARK 465 GLU D 529 REMARK 465 ALA D 530 REMARK 465 GLU D 531 REMARK 465 GLY D 532 REMARK 465 GLY D 533 REMARK 465 SER D 534 REMARK 465 LYS D 535 REMARK 465 VAL D 536 REMARK 465 PRO D 537 REMARK 465 GLU D 538 REMARK 465 ASP D 539 REMARK 465 THR D 540 REMARK 465 LEU D 541 REMARK 465 ASN D 542 REMARK 465 LYS D 543 REMARK 465 VAL D 544 REMARK 465 ASP D 545 REMARK 465 ALA D 546 REMARK 465 ALA D 547 REMARK 465 VAL D 548 REMARK 465 ALA D 549 REMARK 465 GLU D 550 REMARK 465 ALA D 551 REMARK 465 LYS D 552 REMARK 465 ALA D 553 REMARK 465 ALA D 554 REMARK 465 LEU D 555 REMARK 465 GLY D 556 REMARK 465 GLY D 557 REMARK 465 SER D 558 REMARK 465 ASP D 559 REMARK 465 ILE D 560 REMARK 465 SER D 561 REMARK 465 ALA D 562 REMARK 465 ILE D 563 REMARK 465 LYS D 564 REMARK 465 SER D 565 REMARK 465 ALA D 566 REMARK 465 MET D 567 REMARK 465 GLU D 568 REMARK 465 LYS D 569 REMARK 465 LEU D 570 REMARK 465 GLY D 571 REMARK 465 GLN D 572 REMARK 465 GLU D 573 REMARK 465 SER D 574 REMARK 465 GLN D 575 REMARK 465 ALA D 576 REMARK 465 LEU D 577 REMARK 465 GLY D 578 REMARK 465 GLN D 579 REMARK 465 ALA D 580 REMARK 465 ILE D 581 REMARK 465 TYR D 582 REMARK 465 GLU D 583 REMARK 465 ALA D 584 REMARK 465 ALA D 585 REMARK 465 GLN D 586 REMARK 465 ALA D 587 REMARK 465 ALA D 588 REMARK 465 SER D 589 REMARK 465 GLN D 590 REMARK 465 ALA D 591 REMARK 465 THR D 592 REMARK 465 GLY D 593 REMARK 465 ALA D 594 REMARK 465 ALA D 595 REMARK 465 HIS D 596 REMARK 465 PRO D 597 REMARK 465 GLY D 598 REMARK 465 GLY D 599 REMARK 465 GLU D 600 REMARK 465 PRO D 601 REMARK 465 GLY D 602 REMARK 465 GLY D 603 REMARK 465 ALA D 604 REMARK 465 HIS D 605 REMARK 465 PRO D 606 REMARK 465 GLY D 607 REMARK 465 SER D 608 REMARK 465 ALA D 609 REMARK 465 ASP D 610 REMARK 465 ASP D 611 REMARK 465 VAL D 612 REMARK 465 VAL D 613 REMARK 465 ASP D 614 REMARK 465 ALA D 615 REMARK 465 GLU D 616 REMARK 465 VAL D 617 REMARK 465 VAL D 618 REMARK 465 ASP D 619 REMARK 465 ASP D 620 REMARK 465 GLY D 621 REMARK 465 ARG D 622 REMARK 465 GLU D 623 REMARK 465 ALA D 624 REMARK 465 LYS D 625 REMARK 465 MET E 1 REMARK 465 THR E 2 REMARK 465 ASP E 3 REMARK 465 GLY E 4 REMARK 465 ASN E 5 REMARK 465 GLN E 6 REMARK 465 LYS E 7 REMARK 465 PRO E 8 REMARK 465 ASP E 9 REMARK 465 GLY E 10 REMARK 465 ASN E 11 REMARK 465 SER E 12 REMARK 465 GLY E 13 REMARK 465 GLU E 14 REMARK 465 GLN E 15 REMARK 465 VAL E 16 REMARK 465 THR E 17 REMARK 465 VAL E 18 REMARK 465 THR E 19 REMARK 465 ASP E 20 REMARK 465 LYS E 21 REMARK 465 ARG E 22 REMARK 465 ARG E 23 REMARK 465 ILE E 24 REMARK 465 ASP E 25 REMARK 465 PRO E 26 REMARK 465 GLU E 27 REMARK 465 THR E 28 REMARK 465 GLY E 29 REMARK 465 GLU E 30 REMARK 465 VAL E 31 REMARK 465 ARG E 32 REMARK 465 HIS E 33 REMARK 465 VAL E 34 REMARK 465 PRO E 35 REMARK 465 PRO E 36 REMARK 465 GLY E 37 REMARK 465 ASP E 38 REMARK 465 MET E 39 REMARK 465 PRO E 40 REMARK 465 GLY E 41 REMARK 465 GLY E 42 REMARK 465 THR E 43 REMARK 465 GLY E 156 REMARK 465 GLY E 157 REMARK 465 GLN E 158 REMARK 465 GLY E 159 REMARK 465 ASP E 188 REMARK 465 THR E 189 REMARK 465 VAL E 190 REMARK 465 VAL E 191 REMARK 465 VAL E 192 REMARK 465 ASP E 193 REMARK 465 ALA E 194 REMARK 465 ALA E 195 REMARK 465 GLU E 196 REMARK 465 LEU E 197 REMARK 465 GLU E 198 REMARK 465 SER E 199 REMARK 465 VAL E 200 REMARK 465 ASP E 201 REMARK 465 ASP E 202 REMARK 465 GLY E 203 REMARK 465 THR E 204 REMARK 465 ALA E 205 REMARK 465 VAL E 206 REMARK 465 ALA E 207 REMARK 465 ASP E 208 REMARK 465 THR E 209 REMARK 465 ALA E 210 REMARK 465 GLU E 211 REMARK 465 ASN E 212 REMARK 465 ASP E 213 REMARK 465 GLN E 214 REMARK 465 ALA E 215 REMARK 465 ASP E 216 REMARK 465 GLN E 217 REMARK 465 GLY E 218 REMARK 465 ASN E 219 REMARK 465 SER E 220 REMARK 465 ALA E 221 REMARK 465 ASP E 222 REMARK 465 THR E 223 REMARK 465 SER E 224 REMARK 465 GLY E 225 REMARK 465 GLU E 226 REMARK 465 GLN E 227 REMARK 465 ALA E 228 REMARK 465 GLU E 229 REMARK 465 SER E 230 REMARK 465 GLU E 231 REMARK 465 PRO E 232 REMARK 465 SER E 233 REMARK 465 GLY E 234 REMARK 465 SER E 235 REMARK 465 MET F 1 REMARK 465 THR F 2 REMARK 465 ASP F 3 REMARK 465 GLY F 4 REMARK 465 ASN F 5 REMARK 465 GLN F 6 REMARK 465 LYS F 7 REMARK 465 PRO F 8 REMARK 465 ASP F 9 REMARK 465 GLY F 10 REMARK 465 ASN F 11 REMARK 465 SER F 12 REMARK 465 GLY F 13 REMARK 465 GLU F 14 REMARK 465 GLN F 15 REMARK 465 VAL F 16 REMARK 465 THR F 17 REMARK 465 VAL F 18 REMARK 465 THR F 19 REMARK 465 ASP F 20 REMARK 465 LYS F 21 REMARK 465 ARG F 22 REMARK 465 ARG F 23 REMARK 465 ILE F 24 REMARK 465 ASP F 25 REMARK 465 PRO F 26 REMARK 465 GLU F 27 REMARK 465 THR F 28 REMARK 465 GLY F 29 REMARK 465 GLU F 30 REMARK 465 VAL F 31 REMARK 465 ARG F 32 REMARK 465 HIS F 33 REMARK 465 VAL F 34 REMARK 465 PRO F 35 REMARK 465 PRO F 36 REMARK 465 GLY F 37 REMARK 465 ASP F 38 REMARK 465 MET F 39 REMARK 465 PRO F 40 REMARK 465 GLY F 41 REMARK 465 GLY F 42 REMARK 465 THR F 43 REMARK 465 ALA F 44 REMARK 465 PHE F 135 REMARK 465 GLY F 136 REMARK 465 ALA F 137 REMARK 465 GLU F 138 REMARK 465 GLY F 139 REMARK 465 GLU F 140 REMARK 465 ASP F 141 REMARK 465 PHE F 142 REMARK 465 ASP F 143 REMARK 465 PRO F 144 REMARK 465 VAL F 145 REMARK 465 LEU F 146 REMARK 465 HIS F 147 REMARK 465 GLU F 148 REMARK 465 ALA F 149 REMARK 465 VAL F 150 REMARK 465 GLN F 151 REMARK 465 HIS F 152 REMARK 465 GLU F 153 REMARK 465 GLY F 154 REMARK 465 ASP F 155 REMARK 465 GLY F 156 REMARK 465 GLY F 157 REMARK 465 GLN F 158 REMARK 465 GLY F 159 REMARK 465 SER F 160 REMARK 465 LYS F 161 REMARK 465 PRO F 162 REMARK 465 VAL F 163 REMARK 465 ILE F 164 REMARK 465 GLY F 165 REMARK 465 THR F 166 REMARK 465 VAL F 167 REMARK 465 MET F 168 REMARK 465 ARG F 169 REMARK 465 GLN F 170 REMARK 465 GLY F 171 REMARK 465 TYR F 172 REMARK 465 GLN F 173 REMARK 465 LEU F 174 REMARK 465 GLY F 175 REMARK 465 GLU F 176 REMARK 465 GLN F 177 REMARK 465 VAL F 178 REMARK 465 LEU F 179 REMARK 465 ARG F 180 REMARK 465 HIS F 181 REMARK 465 ALA F 182 REMARK 465 LEU F 183 REMARK 465 VAL F 184 REMARK 465 GLY F 185 REMARK 465 VAL F 186 REMARK 465 VAL F 187 REMARK 465 ASP F 188 REMARK 465 THR F 189 REMARK 465 VAL F 190 REMARK 465 VAL F 191 REMARK 465 VAL F 192 REMARK 465 ASP F 193 REMARK 465 ALA F 194 REMARK 465 ALA F 195 REMARK 465 GLU F 196 REMARK 465 LEU F 197 REMARK 465 GLU F 198 REMARK 465 SER F 199 REMARK 465 VAL F 200 REMARK 465 ASP F 201 REMARK 465 ASP F 202 REMARK 465 GLY F 203 REMARK 465 THR F 204 REMARK 465 ALA F 205 REMARK 465 VAL F 206 REMARK 465 ALA F 207 REMARK 465 ASP F 208 REMARK 465 THR F 209 REMARK 465 ALA F 210 REMARK 465 GLU F 211 REMARK 465 ASN F 212 REMARK 465 ASP F 213 REMARK 465 GLN F 214 REMARK 465 ALA F 215 REMARK 465 ASP F 216 REMARK 465 GLN F 217 REMARK 465 GLY F 218 REMARK 465 ASN F 219 REMARK 465 SER F 220 REMARK 465 ALA F 221 REMARK 465 ASP F 222 REMARK 465 THR F 223 REMARK 465 SER F 224 REMARK 465 GLY F 225 REMARK 465 GLU F 226 REMARK 465 GLN F 227 REMARK 465 ALA F 228 REMARK 465 GLU F 229 REMARK 465 SER F 230 REMARK 465 GLU F 231 REMARK 465 PRO F 232 REMARK 465 SER F 233 REMARK 465 GLY F 234 REMARK 465 SER F 235 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE D 81 CD1 REMARK 470 THR D 87 OG1 CG2 REMARK 470 ILE D 95 CD1 REMARK 470 ILE D 111 CD1 REMARK 470 LYS D 159 CG CD CE NZ REMARK 470 LYS D 162 CB CG CD CE NZ REMARK 470 ARG D 165 CD NE CZ NH1 NH2 REMARK 470 VAL D 188 CG1 REMARK 470 ARG D 191 CZ NH1 NH2 REMARK 470 THR D 225 CG2 REMARK 470 LYS D 228 CE NZ REMARK 470 VAL D 260 CG1 REMARK 470 THR D 330 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN D 29 -168.40 -77.88 REMARK 500 GLU D 31 50.90 -93.74 REMARK 500 ASP D 82 15.67 55.89 REMARK 500 ARG D 191 -60.50 -98.87 REMARK 500 SER D 246 41.57 -85.16 REMARK 500 SER D 248 71.37 50.25 REMARK 500 ASP D 270 116.90 -160.09 REMARK 500 ARG D 318 1.03 -68.43 REMARK 500 LYS D 361 -125.15 61.23 REMARK 500 ASP D 362 -135.35 51.39 REMARK 500 LEU D 365 -3.29 67.28 REMARK 500 VAL D 368 -62.51 -122.46 REMARK 500 PRO D 370 45.26 -83.67 REMARK 500 LEU D 371 -98.52 50.67 REMARK 500 GLN D 476 14.91 58.50 REMARK 500 HIS D 496 54.24 -92.99 REMARK 500 LEU E 179 -62.27 -94.21 REMARK 500 ALA F 89 -150.74 52.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-29912 RELATED DB: EMDB REMARK 900 STRUCTURE OF THE MYCOBACTERIUM TUBERCULOSIS HSP70 PROTEIN DNAK REMARK 900 BOUND TO THE NUCLEOTIDE EXCHANGE FACTOR GRPE REMARK 900 RELATED ID: EMD-29913 RELATED DB: EMDB REMARK 900 CRYO-EM 3D MAP OF THE MYCOBACTERIUM TUBERCULOSIS HSP70 PROTEIN DNAK REMARK 900 BOUND TO THE NUCLEOTIDE EXCHANGE FACTOR GRPE REMARK 900 RELATED ID: EMD-29914 RELATED DB: EMDB REMARK 900 CRYO-EM 3D FOCUSED MAP OF THE MYCOBACTERIUM TUBERCULOSIS HSP70 REMARK 900 PROTEIN DNAK SBD DOMAIN DBREF1 8GB3 D 1 625 UNP A0A045JRR0_MYCTX DBREF2 8GB3 D A0A045JRR0 1 625 DBREF1 8GB3 E 1 235 UNP A0A045J399_MYCTX DBREF2 8GB3 E A0A045J399 1 235 DBREF1 8GB3 F 1 235 UNP A0A045J399_MYCTX DBREF2 8GB3 F A0A045J399 1 235 SEQRES 1 D 625 MET ALA ARG ALA VAL GLY ILE ASP LEU GLY THR THR ASN SEQRES 2 D 625 SER VAL VAL SER VAL LEU GLU GLY GLY ASP PRO VAL VAL SEQRES 3 D 625 VAL ALA ASN SER GLU GLY SER ARG THR THR PRO SER ILE SEQRES 4 D 625 VAL ALA PHE ALA ARG ASN GLY GLU VAL LEU VAL GLY GLN SEQRES 5 D 625 PRO ALA LYS ASN GLN ALA VAL THR ASN VAL ASP ARG THR SEQRES 6 D 625 VAL ARG SER VAL LYS ARG HIS MET GLY SER ASP TRP SER SEQRES 7 D 625 ILE GLU ILE ASP GLY LYS LYS TYR THR ALA PRO GLU ILE SEQRES 8 D 625 SER ALA ARG ILE LEU MET LYS LEU LYS ARG ASP ALA GLU SEQRES 9 D 625 ALA TYR LEU GLY GLU ASP ILE THR ASP ALA VAL ILE THR SEQRES 10 D 625 THR PRO ALA TYR PHE ASN ASP ALA GLN ARG GLN ALA THR SEQRES 11 D 625 LYS ASP ALA GLY GLN ILE ALA GLY LEU ASN VAL LEU ARG SEQRES 12 D 625 ILE VAL ASN GLU PRO THR ALA ALA ALA LEU ALA TYR GLY SEQRES 13 D 625 LEU ASP LYS GLY GLU LYS GLU GLN ARG ILE LEU VAL PHE SEQRES 14 D 625 ASP LEU GLY GLY GLY THR PHE ASP VAL SER LEU LEU GLU SEQRES 15 D 625 ILE GLY GLU GLY VAL VAL GLU VAL ARG ALA THR SER GLY SEQRES 16 D 625 ASP ASN HIS LEU GLY GLY ASP ASP TRP ASP GLN ARG VAL SEQRES 17 D 625 VAL ASP TRP LEU VAL ASP LYS PHE LYS GLY THR SER GLY SEQRES 18 D 625 ILE ASP LEU THR LYS ASP LYS MET ALA MET GLN ARG LEU SEQRES 19 D 625 ARG GLU ALA ALA GLU LYS ALA LYS ILE GLU LEU SER SER SEQRES 20 D 625 SER GLN SER THR SER ILE ASN LEU PRO TYR ILE THR VAL SEQRES 21 D 625 ASP ALA ASP LYS ASN PRO LEU PHE LEU ASP GLU GLN LEU SEQRES 22 D 625 THR ARG ALA GLU PHE GLN ARG ILE THR GLN ASP LEU LEU SEQRES 23 D 625 ASP ARG THR ARG LYS PRO PHE GLN SER VAL ILE ALA ASP SEQRES 24 D 625 THR GLY ILE SER VAL SER GLU ILE ASP HIS VAL VAL LEU SEQRES 25 D 625 VAL GLY GLY SER THR ARG MET PRO ALA VAL THR ASP LEU SEQRES 26 D 625 VAL LYS GLU LEU THR GLY GLY LYS GLU PRO ASN LYS GLY SEQRES 27 D 625 VAL ASN PRO ASP GLU VAL VAL ALA VAL GLY ALA ALA LEU SEQRES 28 D 625 GLN ALA GLY VAL LEU LYS GLY GLU VAL LYS ASP VAL LEU SEQRES 29 D 625 LEU LEU ASP VAL THR PRO LEU SER LEU GLY ILE GLU THR SEQRES 30 D 625 LYS GLY GLY VAL MET THR ARG LEU ILE GLU ARG ASN THR SEQRES 31 D 625 THR ILE PRO THR LYS ARG SER GLU THR PHE THR THR ALA SEQRES 32 D 625 ASP ASP ASN GLN PRO SER VAL GLN ILE GLN VAL TYR GLN SEQRES 33 D 625 GLY GLU ARG GLU ILE ALA ALA HIS ASN LYS LEU LEU GLY SEQRES 34 D 625 SER PHE GLU LEU THR GLY ILE PRO PRO ALA PRO ARG GLY SEQRES 35 D 625 ILE PRO GLN ILE GLU VAL THR PHE ASP ILE ASP ALA ASN SEQRES 36 D 625 GLY ILE VAL HIS VAL THR ALA LYS ASP LYS GLY THR GLY SEQRES 37 D 625 LYS GLU ASN THR ILE ARG ILE GLN GLU GLY SER GLY LEU SEQRES 38 D 625 SER LYS GLU ASP ILE ASP ARG MET ILE LYS ASP ALA GLU SEQRES 39 D 625 ALA HIS ALA GLU GLU ASP ARG LYS ARG ARG GLU GLU ALA SEQRES 40 D 625 ASP VAL ARG ASN GLN ALA GLU THR LEU VAL TYR GLN THR SEQRES 41 D 625 GLU LYS PHE VAL LYS GLU GLN ARG GLU ALA GLU GLY GLY SEQRES 42 D 625 SER LYS VAL PRO GLU ASP THR LEU ASN LYS VAL ASP ALA SEQRES 43 D 625 ALA VAL ALA GLU ALA LYS ALA ALA LEU GLY GLY SER ASP SEQRES 44 D 625 ILE SER ALA ILE LYS SER ALA MET GLU LYS LEU GLY GLN SEQRES 45 D 625 GLU SER GLN ALA LEU GLY GLN ALA ILE TYR GLU ALA ALA SEQRES 46 D 625 GLN ALA ALA SER GLN ALA THR GLY ALA ALA HIS PRO GLY SEQRES 47 D 625 GLY GLU PRO GLY GLY ALA HIS PRO GLY SER ALA ASP ASP SEQRES 48 D 625 VAL VAL ASP ALA GLU VAL VAL ASP ASP GLY ARG GLU ALA SEQRES 49 D 625 LYS SEQRES 1 E 235 MET THR ASP GLY ASN GLN LYS PRO ASP GLY ASN SER GLY SEQRES 2 E 235 GLU GLN VAL THR VAL THR ASP LYS ARG ARG ILE ASP PRO SEQRES 3 E 235 GLU THR GLY GLU VAL ARG HIS VAL PRO PRO GLY ASP MET SEQRES 4 E 235 PRO GLY GLY THR ALA ALA ALA ASP ALA ALA HIS THR GLU SEQRES 5 E 235 ASP LYS VAL ALA GLU LEU THR ALA ASP LEU GLN ARG VAL SEQRES 6 E 235 GLN ALA ASP PHE ALA ASN TYR ARG LYS ARG ALA LEU ARG SEQRES 7 E 235 ASP GLN GLN ALA ALA ALA ASP ARG ALA LYS ALA SER VAL SEQRES 8 E 235 VAL SER GLN LEU LEU GLY VAL LEU ASP ASP LEU GLU ARG SEQRES 9 E 235 ALA ARG LYS HIS GLY ASP LEU GLU SER GLY PRO LEU LYS SEQRES 10 E 235 SER VAL ALA ASP LYS LEU ASP SER ALA LEU THR GLY LEU SEQRES 11 E 235 GLY LEU VAL ALA PHE GLY ALA GLU GLY GLU ASP PHE ASP SEQRES 12 E 235 PRO VAL LEU HIS GLU ALA VAL GLN HIS GLU GLY ASP GLY SEQRES 13 E 235 GLY GLN GLY SER LYS PRO VAL ILE GLY THR VAL MET ARG SEQRES 14 E 235 GLN GLY TYR GLN LEU GLY GLU GLN VAL LEU ARG HIS ALA SEQRES 15 E 235 LEU VAL GLY VAL VAL ASP THR VAL VAL VAL ASP ALA ALA SEQRES 16 E 235 GLU LEU GLU SER VAL ASP ASP GLY THR ALA VAL ALA ASP SEQRES 17 E 235 THR ALA GLU ASN ASP GLN ALA ASP GLN GLY ASN SER ALA SEQRES 18 E 235 ASP THR SER GLY GLU GLN ALA GLU SER GLU PRO SER GLY SEQRES 19 E 235 SER SEQRES 1 F 235 MET THR ASP GLY ASN GLN LYS PRO ASP GLY ASN SER GLY SEQRES 2 F 235 GLU GLN VAL THR VAL THR ASP LYS ARG ARG ILE ASP PRO SEQRES 3 F 235 GLU THR GLY GLU VAL ARG HIS VAL PRO PRO GLY ASP MET SEQRES 4 F 235 PRO GLY GLY THR ALA ALA ALA ASP ALA ALA HIS THR GLU SEQRES 5 F 235 ASP LYS VAL ALA GLU LEU THR ALA ASP LEU GLN ARG VAL SEQRES 6 F 235 GLN ALA ASP PHE ALA ASN TYR ARG LYS ARG ALA LEU ARG SEQRES 7 F 235 ASP GLN GLN ALA ALA ALA ASP ARG ALA LYS ALA SER VAL SEQRES 8 F 235 VAL SER GLN LEU LEU GLY VAL LEU ASP ASP LEU GLU ARG SEQRES 9 F 235 ALA ARG LYS HIS GLY ASP LEU GLU SER GLY PRO LEU LYS SEQRES 10 F 235 SER VAL ALA ASP LYS LEU ASP SER ALA LEU THR GLY LEU SEQRES 11 F 235 GLY LEU VAL ALA PHE GLY ALA GLU GLY GLU ASP PHE ASP SEQRES 12 F 235 PRO VAL LEU HIS GLU ALA VAL GLN HIS GLU GLY ASP GLY SEQRES 13 F 235 GLY GLN GLY SER LYS PRO VAL ILE GLY THR VAL MET ARG SEQRES 14 F 235 GLN GLY TYR GLN LEU GLY GLU GLN VAL LEU ARG HIS ALA SEQRES 15 F 235 LEU VAL GLY VAL VAL ASP THR VAL VAL VAL ASP ALA ALA SEQRES 16 F 235 GLU LEU GLU SER VAL ASP ASP GLY THR ALA VAL ALA ASP SEQRES 17 F 235 THR ALA GLU ASN ASP GLN ALA ASP GLN GLY ASN SER ALA SEQRES 18 F 235 ASP THR SER GLY GLU GLN ALA GLU SER GLU PRO SER GLY SEQRES 19 F 235 SER HELIX 1 AA1 GLY D 51 ASN D 61 1 11 HELIX 2 AA2 ALA D 88 ALA D 103 1 16 HELIX 3 AA3 GLU D 104 TYR D 106 5 3 HELIX 4 AA4 ASN D 123 GLY D 138 1 16 HELIX 5 AA5 ASN D 146 GLY D 156 1 11 HELIX 6 AA6 GLY D 200 SER D 220 1 21 HELIX 7 AA7 ASP D 227 LEU D 245 1 19 HELIX 8 AA8 THR D 274 ARG D 288 1 15 HELIX 9 AA9 THR D 289 THR D 300 1 12 HELIX 10 AB1 MET D 319 THR D 330 1 12 HELIX 11 AB2 ASN D 340 ASP D 342 5 3 HELIX 12 AB3 GLU D 343 LYS D 357 1 15 HELIX 13 AB4 SER D 482 HIS D 496 1 15 HELIX 14 AB5 ARG D 501 VAL D 509 1 9 HELIX 15 AB6 ARG D 510 GLN D 512 5 3 HELIX 16 AB7 ALA E 45 ASP E 79 1 35 HELIX 17 AB8 ASP E 79 GLN E 94 1 16 HELIX 18 AB9 LEU E 95 HIS E 108 1 14 HELIX 19 AC1 GLY E 114 GLY E 129 1 16 HELIX 20 AC2 ASP F 47 ALA F 83 1 37 HELIX 21 AC3 ALA F 83 ALA F 89 1 7 HELIX 22 AC4 SER F 90 LYS F 107 1 18 HELIX 23 AC5 GLY F 114 LEU F 116 5 3 HELIX 24 AC6 LYS F 117 LEU F 130 1 14 SHEET 1 AA1 5 PRO D 24 VAL D 27 0 SHEET 2 AA1 5 VAL D 15 LEU D 19 -1 N VAL D 18 O VAL D 25 SHEET 3 AA1 5 ALA D 4 ASP D 8 -1 N GLY D 6 O SER D 17 SHEET 4 AA1 5 ASP D 113 ILE D 116 1 O VAL D 115 N ILE D 7 SHEET 5 AA1 5 ASN D 140 VAL D 141 1 O ASN D 140 N ALA D 114 SHEET 1 AA2 3 ASP D 177 LEU D 181 0 SHEET 2 AA2 3 ILE D 166 ASP D 170 -1 N ILE D 166 O LEU D 181 SHEET 3 AA2 3 HIS D 309 VAL D 313 1 O HIS D 309 N LEU D 167 SHEET 1 AA3 4 VAL D 381 ILE D 386 0 SHEET 2 AA3 4 LEU D 373 THR D 377 -1 N THR D 377 O VAL D 381 SHEET 3 AA3 4 VAL D 410 GLN D 416 -1 O GLN D 413 N GLU D 376 SHEET 4 AA3 4 LYS D 426 LEU D 433 -1 O PHE D 431 N ILE D 412 SHEET 1 AA4 4 THR D 399 PHE D 400 0 SHEET 2 AA4 4 ILE D 446 ILE D 452 -1 O ILE D 446 N PHE D 400 SHEET 3 AA4 4 VAL D 458 ASP D 464 -1 O HIS D 459 N ASP D 451 SHEET 4 AA4 4 GLU D 470 ILE D 473 -1 O ASN D 471 N ALA D 462 SHEET 1 AA5 2 VAL E 163 ARG E 169 0 SHEET 2 AA5 2 LEU E 183 VAL E 187 -1 O GLY E 185 N GLY E 165 SHEET 1 AA6 2 TYR E 172 LEU E 174 0 SHEET 2 AA6 2 GLN E 177 ARG E 180 -1 O GLN E 177 N LEU E 174 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000