HEADER TRANSFERASE 26-FEB-23 8GBL TITLE STRUCTURE OF APO HUMAN SIRT5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: REGULATORY PROTEIN SIR2 HOMOLOG 5,SIR2-LIKE PROTEIN 5; COMPND 5 EC: 2.3.1.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SIRT5, SIR2L5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DEACETYLASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR E.M.PETRUNAK,J.A.STUCKEY REVDAT 2 19-JUN-24 8GBL 1 JRNL REVDAT 1 05-JUN-24 8GBL 0 JRNL AUTH T.YUAN,S.KUMAR,M.E.SKINNER,R.VICTOR-JOSEPH,M.ABUAITA, JRNL AUTH 2 J.KEIJER,J.ZHANG,T.J.KUNKEL,Y.LIU,E.M.PETRUNAK,T.L.SAUNDERS, JRNL AUTH 3 A.P.LIEBERMAN,J.A.STUCKEY,N.NEAMATI,F.AL-MURSHEDI, JRNL AUTH 4 M.ALFADHEL,J.N.SPELBRINK,R.RODENBURG,V.C.J.DE BOER, JRNL AUTH 5 D.B.LOMBARD JRNL TITL HUMAN SIRT5 VARIANTS WITH REDUCED STABILITY AND ACTIVITY DO JRNL TITL 2 NOT CAUSE NEUROPATHOLOGY IN MICE. JRNL REF ISCIENCE V. 27 09991 2024 JRNL REFN ESSN 2589-0042 JRNL PMID 38846003 JRNL DOI 10.1016/J.ISCI.2024.109991 REMARK 2 REMARK 2 RESOLUTION. 2.24 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.24 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 23941 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.770 REMARK 3 FREE R VALUE TEST SET COUNT : 1143 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 50 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.24 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.27 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 64.45 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 479 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2194 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 465 REMARK 3 BIN R VALUE (WORKING SET) : 0.2163 REMARK 3 BIN FREE R VALUE : 0.3204 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 2.92 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3791 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 116 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.39000 REMARK 3 B22 (A**2) : 1.71680 REMARK 3 B33 (A**2) : -1.32690 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.78030 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.320 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.318 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.227 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.333 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.234 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.909 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.869 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3886 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5286 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1256 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 665 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3886 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 505 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4401 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.06 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.85 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.99 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|38 - A|67 } REMARK 3 ORIGIN FOR THE GROUP (A): 0.895 0.743 -1.017 REMARK 3 T TENSOR REMARK 3 T11: -0.1088 T22: 0.0789 REMARK 3 T33: -0.2598 T12: -0.0838 REMARK 3 T13: -0.0309 T23: 0.0810 REMARK 3 L TENSOR REMARK 3 L11: -0.0006 L22: 5.0830 REMARK 3 L33: 4.3571 L12: -0.6995 REMARK 3 L13: 0.5842 L23: -0.7345 REMARK 3 S TENSOR REMARK 3 S11: -0.0036 S12: 0.6702 S13: -0.3909 REMARK 3 S21: -0.6813 S22: 0.3663 S23: 0.5357 REMARK 3 S31: 0.2202 S32: -0.4142 S33: -0.3627 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|68 - A|112 } REMARK 3 ORIGIN FOR THE GROUP (A): 23.023 0.445 20.579 REMARK 3 T TENSOR REMARK 3 T11: -0.0714 T22: -0.0161 REMARK 3 T33: 0.0534 T12: -0.1188 REMARK 3 T13: 0.1345 T23: -0.1211 REMARK 3 L TENSOR REMARK 3 L11: 4.0534 L22: 5.4676 REMARK 3 L33: 5.6918 L12: 0.8579 REMARK 3 L13: 1.4109 L23: -0.7552 REMARK 3 S TENSOR REMARK 3 S11: -0.2252 S12: 0.6630 S13: -0.6121 REMARK 3 S21: -0.5253 S22: 0.3565 S23: -0.6666 REMARK 3 S31: -0.1656 S32: 0.6118 S33: -0.1313 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { A|113 - A|227 } REMARK 3 ORIGIN FOR THE GROUP (A): 9.928 3.508 20.666 REMARK 3 T TENSOR REMARK 3 T11: -0.0464 T22: -0.0681 REMARK 3 T33: -0.0915 T12: 0.0196 REMARK 3 T13: 0.0652 T23: -0.0010 REMARK 3 L TENSOR REMARK 3 L11: 1.9030 L22: 1.7035 REMARK 3 L33: 3.4397 L12: 0.1615 REMARK 3 L13: 1.0748 L23: -0.1812 REMARK 3 S TENSOR REMARK 3 S11: 0.0080 S12: -0.0695 S13: 0.0044 REMARK 3 S21: -0.0790 S22: 0.1038 S23: -0.0800 REMARK 3 S31: -0.3964 S32: -0.2259 S33: -0.1119 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { A|228 - A|262 } REMARK 3 ORIGIN FOR THE GROUP (A): 1.446 -8.800 8.335 REMARK 3 T TENSOR REMARK 3 T11: -0.0295 T22: -0.0294 REMARK 3 T33: -0.0554 T12: 0.0116 REMARK 3 T13: 0.0272 T23: -0.0604 REMARK 3 L TENSOR REMARK 3 L11: 9.1553 L22: 5.4097 REMARK 3 L33: 5.1399 L12: 3.2338 REMARK 3 L13: -1.9678 L23: -4.9461 REMARK 3 S TENSOR REMARK 3 S11: -0.0209 S12: -0.0283 S13: -0.5694 REMARK 3 S21: -0.5375 S22: 0.1854 S23: 0.6781 REMARK 3 S31: 0.7393 S32: -0.2284 S33: -0.1645 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { A|263 - A|302 } REMARK 3 ORIGIN FOR THE GROUP (A): 4.025 -2.494 -3.891 REMARK 3 T TENSOR REMARK 3 T11: -0.0013 T22: 0.0442 REMARK 3 T33: -0.2298 T12: -0.0133 REMARK 3 T13: -0.0319 T23: 0.0648 REMARK 3 L TENSOR REMARK 3 L11: 1.0854 L22: 8.2517 REMARK 3 L33: 9.6621 L12: 0.4066 REMARK 3 L13: -0.6827 L23: 2.1458 REMARK 3 S TENSOR REMARK 3 S11: 0.0451 S12: 0.2600 S13: -0.2523 REMARK 3 S21: -0.3618 S22: 0.1278 S23: -0.2454 REMARK 3 S31: 0.6928 S32: -0.5516 S33: -0.1730 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: { B|38 - B|75 } REMARK 3 ORIGIN FOR THE GROUP (A): 15.874 -29.735 8.395 REMARK 3 T TENSOR REMARK 3 T11: 0.0030 T22: 0.0161 REMARK 3 T33: -0.2044 T12: -0.0753 REMARK 3 T13: -0.0990 T23: -0.0431 REMARK 3 L TENSOR REMARK 3 L11: 0.0010 L22: 6.7074 REMARK 3 L33: 7.4742 L12: 0.6581 REMARK 3 L13: -0.9910 L23: 0.9824 REMARK 3 S TENSOR REMARK 3 S11: -0.1332 S12: 0.7097 S13: 0.3063 REMARK 3 S21: -0.6239 S22: 0.2721 S23: 0.0188 REMARK 3 S31: -0.2622 S32: -0.3872 S33: -0.1388 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: { B|76 - B|190 } REMARK 3 ORIGIN FOR THE GROUP (A): 8.578 -32.844 25.688 REMARK 3 T TENSOR REMARK 3 T11: -0.1404 T22: -0.1600 REMARK 3 T33: -0.1374 T12: -0.0385 REMARK 3 T13: -0.1303 T23: -0.0197 REMARK 3 L TENSOR REMARK 3 L11: 2.8861 L22: 2.1390 REMARK 3 L33: 5.1538 L12: 0.6854 REMARK 3 L13: -2.1236 L23: -0.0682 REMARK 3 S TENSOR REMARK 3 S11: -0.1663 S12: 0.2055 S13: 0.0621 REMARK 3 S21: -0.2051 S22: 0.0943 S23: 0.1808 REMARK 3 S31: 0.4740 S32: -0.3174 S33: 0.0720 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: { B|191 - B|225 } REMARK 3 ORIGIN FOR THE GROUP (A): 1.858 -29.673 37.823 REMARK 3 T TENSOR REMARK 3 T11: -0.1436 T22: 0.0511 REMARK 3 T33: -0.0056 T12: -0.0149 REMARK 3 T13: -0.0486 T23: -0.0250 REMARK 3 L TENSOR REMARK 3 L11: 4.5536 L22: 5.6088 REMARK 3 L33: 2.0442 L12: 2.4022 REMARK 3 L13: -2.1770 L23: 0.0209 REMARK 3 S TENSOR REMARK 3 S11: 0.0403 S12: 0.0404 S13: 0.4578 REMARK 3 S21: -0.1146 S22: 0.2060 S23: 0.6453 REMARK 3 S31: 0.3863 S32: -0.5498 S33: -0.2463 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: { B|226 - B|252 } REMARK 3 ORIGIN FOR THE GROUP (A): 21.011 -21.149 17.435 REMARK 3 T TENSOR REMARK 3 T11: -0.0391 T22: -0.0788 REMARK 3 T33: -0.0246 T12: -0.0157 REMARK 3 T13: -0.0638 T23: 0.0161 REMARK 3 L TENSOR REMARK 3 L11: 3.0603 L22: 7.6493 REMARK 3 L33: 6.6769 L12: 2.6128 REMARK 3 L13: 1.2919 L23: 4.9720 REMARK 3 S TENSOR REMARK 3 S11: -0.0176 S12: 0.1464 S13: 0.3146 REMARK 3 S21: -0.3785 S22: 0.1198 S23: -0.5122 REMARK 3 S31: -0.7707 S32: 0.3512 S33: -0.1022 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: { B|257 - B|302 } REMARK 3 ORIGIN FOR THE GROUP (A): 16.683 -25.343 5.061 REMARK 3 T TENSOR REMARK 3 T11: 0.1276 T22: -0.0967 REMARK 3 T33: -0.2287 T12: -0.0465 REMARK 3 T13: -0.0583 T23: 0.0015 REMARK 3 L TENSOR REMARK 3 L11: 0.7375 L22: 9.0138 REMARK 3 L33: 7.1744 L12: 0.4670 REMARK 3 L13: -0.4840 L23: 0.8556 REMARK 3 S TENSOR REMARK 3 S11: 0.0130 S12: 0.5456 S13: 0.3571 REMARK 3 S21: -0.7003 S22: 0.0141 S23: 0.2952 REMARK 3 S31: -0.9775 S32: -0.0463 S33: -0.0271 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8GBL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-MAR-23. REMARK 100 THE DEPOSITION ID IS D_1000272516. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-APR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23939 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 41.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.75600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES 6.5, 25% PEG 4K, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 56.26400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 32 REMARK 465 MET A 33 REMARK 465 ALA A 34 REMARK 465 ARG A 35 REMARK 465 PRO A 36 REMARK 465 SER A 37 REMARK 465 THR A 278 REMARK 465 THR A 279 REMARK 465 PRO A 280 REMARK 465 ALA A 281 REMARK 465 THR A 282 REMARK 465 ASN A 283 REMARK 465 ARG A 284 REMARK 465 PHE A 285 REMARK 465 LYS B 32 REMARK 465 MET B 33 REMARK 465 ALA B 34 REMARK 465 ARG B 35 REMARK 465 PRO B 36 REMARK 465 SER B 37 REMARK 465 VAL B 253 REMARK 465 VAL B 254 REMARK 465 TYR B 255 REMARK 465 PRO B 256 REMARK 465 THR B 278 REMARK 465 THR B 279 REMARK 465 PRO B 280 REMARK 465 ALA B 281 REMARK 465 THR B 282 REMARK 465 ASN B 283 REMARK 465 ARG B 284 REMARK 465 PHE B 285 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 38 OG REMARK 470 ASP A 42 CG OD1 OD2 REMARK 470 LYS A 45 CD CE NZ REMARK 470 LYS A 49 CG CD CE NZ REMARK 470 LYS A 51 NZ REMARK 470 ARG A 71 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 79 CG CD CE NZ REMARK 470 GLN A 81 CG CD OE1 NE2 REMARK 470 GLU A 113 CG CD OE1 OE2 REMARK 470 LYS A 130 CG CD CE NZ REMARK 470 LYS A 177 CG CD CE NZ REMARK 470 GLN A 195 CG CD OE1 NE2 REMARK 470 LYS A 203 CE NZ REMARK 470 GLU A 233 CD OE1 OE2 REMARK 470 ARG A 286 CG CD NE CZ NH1 NH2 REMARK 470 SER B 38 OG REMARK 470 ASP B 42 CG OD1 OD2 REMARK 470 LYS B 45 CD CE NZ REMARK 470 LYS B 49 CE NZ REMARK 470 LYS B 51 NZ REMARK 470 ARG B 71 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 79 CE NZ REMARK 470 GLN B 83 CG CD OE1 NE2 REMARK 470 LYS B 130 CG CD CE NZ REMARK 470 GLN B 140 CG CD OE1 NE2 REMARK 470 LYS B 177 CG CD CE NZ REMARK 470 GLN B 195 CG CD OE1 NE2 REMARK 470 LYS B 203 CE NZ REMARK 470 GLU B 233 CD OE1 OE2 REMARK 470 GLU B 277 CG CD OE1 OE2 REMARK 470 ARG B 286 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 39 -175.29 -67.16 REMARK 500 ARG A 78 -135.06 56.27 REMARK 500 SER A 198 56.23 39.63 REMARK 500 CYS A 212 -77.11 -99.78 REMARK 500 THR A 276 32.45 -88.79 REMARK 500 SER B 39 -175.68 -66.86 REMARK 500 PHE B 70 43.15 -83.06 REMARK 500 ARG B 78 -125.10 56.85 REMARK 500 GLN B 83 -19.78 -44.84 REMARK 500 CYS B 212 -75.34 -100.05 REMARK 500 PHE B 260 -52.98 -120.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 600 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 166 SG REMARK 620 2 CYS A 169 SG 108.4 REMARK 620 3 CYS A 207 SG 108.2 112.6 REMARK 620 4 CYS A 212 SG 99.2 115.4 111.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 600 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 166 SG REMARK 620 2 CYS B 169 SG 107.4 REMARK 620 3 CYS B 207 SG 104.4 112.5 REMARK 620 4 CYS B 212 SG 101.3 117.6 112.0 REMARK 620 N 1 2 3 DBREF 8GBL A 32 302 UNP Q9NXA8 SIR5_HUMAN 32 302 DBREF 8GBL B 32 302 UNP Q9NXA8 SIR5_HUMAN 32 302 SEQRES 1 A 271 LYS MET ALA ARG PRO SER SER SER MET ALA ASP PHE ARG SEQRES 2 A 271 LYS PHE PHE ALA LYS ALA LYS HIS ILE VAL ILE ILE SER SEQRES 3 A 271 GLY ALA GLY VAL SER ALA GLU SER GLY VAL PRO THR PHE SEQRES 4 A 271 ARG GLY ALA GLY GLY TYR TRP ARG LYS TRP GLN ALA GLN SEQRES 5 A 271 ASP LEU ALA THR PRO LEU ALA PHE ALA HIS ASN PRO SER SEQRES 6 A 271 ARG VAL TRP GLU PHE TYR HIS TYR ARG ARG GLU VAL MET SEQRES 7 A 271 GLY SER LYS GLU PRO ASN ALA GLY HIS ARG ALA ILE ALA SEQRES 8 A 271 GLU CYS GLU THR ARG LEU GLY LYS GLN GLY ARG ARG VAL SEQRES 9 A 271 VAL VAL ILE THR GLN ASN ILE ASP GLU LEU HIS ARG LYS SEQRES 10 A 271 ALA GLY THR LYS ASN LEU LEU GLU ILE HIS GLY SER LEU SEQRES 11 A 271 PHE LYS THR ARG CYS THR SER CYS GLY VAL VAL ALA GLU SEQRES 12 A 271 ASN TYR LYS SER PRO ILE CYS PRO ALA LEU SER GLY LYS SEQRES 13 A 271 GLY ALA PRO GLU PRO GLY THR GLN ASP ALA SER ILE PRO SEQRES 14 A 271 VAL GLU LYS LEU PRO ARG CYS GLU GLU ALA GLY CYS GLY SEQRES 15 A 271 GLY LEU LEU ARG PRO HIS VAL VAL TRP PHE GLY GLU ASN SEQRES 16 A 271 LEU ASP PRO ALA ILE LEU GLU GLU VAL ASP ARG GLU LEU SEQRES 17 A 271 ALA HIS CYS ASP LEU CYS LEU VAL VAL GLY THR SER SER SEQRES 18 A 271 VAL VAL TYR PRO ALA ALA MET PHE ALA PRO GLN VAL ALA SEQRES 19 A 271 ALA ARG GLY VAL PRO VAL ALA GLU PHE ASN THR GLU THR SEQRES 20 A 271 THR PRO ALA THR ASN ARG PHE ARG PHE HIS PHE GLN GLY SEQRES 21 A 271 PRO CYS GLY THR THR LEU PRO GLU ALA LEU ALA SEQRES 1 B 271 LYS MET ALA ARG PRO SER SER SER MET ALA ASP PHE ARG SEQRES 2 B 271 LYS PHE PHE ALA LYS ALA LYS HIS ILE VAL ILE ILE SER SEQRES 3 B 271 GLY ALA GLY VAL SER ALA GLU SER GLY VAL PRO THR PHE SEQRES 4 B 271 ARG GLY ALA GLY GLY TYR TRP ARG LYS TRP GLN ALA GLN SEQRES 5 B 271 ASP LEU ALA THR PRO LEU ALA PHE ALA HIS ASN PRO SER SEQRES 6 B 271 ARG VAL TRP GLU PHE TYR HIS TYR ARG ARG GLU VAL MET SEQRES 7 B 271 GLY SER LYS GLU PRO ASN ALA GLY HIS ARG ALA ILE ALA SEQRES 8 B 271 GLU CYS GLU THR ARG LEU GLY LYS GLN GLY ARG ARG VAL SEQRES 9 B 271 VAL VAL ILE THR GLN ASN ILE ASP GLU LEU HIS ARG LYS SEQRES 10 B 271 ALA GLY THR LYS ASN LEU LEU GLU ILE HIS GLY SER LEU SEQRES 11 B 271 PHE LYS THR ARG CYS THR SER CYS GLY VAL VAL ALA GLU SEQRES 12 B 271 ASN TYR LYS SER PRO ILE CYS PRO ALA LEU SER GLY LYS SEQRES 13 B 271 GLY ALA PRO GLU PRO GLY THR GLN ASP ALA SER ILE PRO SEQRES 14 B 271 VAL GLU LYS LEU PRO ARG CYS GLU GLU ALA GLY CYS GLY SEQRES 15 B 271 GLY LEU LEU ARG PRO HIS VAL VAL TRP PHE GLY GLU ASN SEQRES 16 B 271 LEU ASP PRO ALA ILE LEU GLU GLU VAL ASP ARG GLU LEU SEQRES 17 B 271 ALA HIS CYS ASP LEU CYS LEU VAL VAL GLY THR SER SER SEQRES 18 B 271 VAL VAL TYR PRO ALA ALA MET PHE ALA PRO GLN VAL ALA SEQRES 19 B 271 ALA ARG GLY VAL PRO VAL ALA GLU PHE ASN THR GLU THR SEQRES 20 B 271 THR PRO ALA THR ASN ARG PHE ARG PHE HIS PHE GLN GLY SEQRES 21 B 271 PRO CYS GLY THR THR LEU PRO GLU ALA LEU ALA HET ZN A 600 1 HET ZN B 600 1 HETNAM ZN ZINC ION FORMUL 3 ZN 2(ZN 2+) FORMUL 5 HOH *116(H2 O) HELIX 1 AA1 SER A 39 ALA A 50 1 12 HELIX 2 AA2 GLY A 58 GLU A 64 1 7 HELIX 3 AA3 THR A 87 ASN A 94 1 8 HELIX 4 AA4 ASN A 94 MET A 109 1 16 HELIX 5 AA5 GLY A 110 LYS A 112 5 3 HELIX 6 AA6 ASN A 115 LYS A 130 1 16 HELIX 7 AA7 GLU A 144 GLY A 150 1 7 HELIX 8 AA8 CYS A 181 SER A 185 5 5 HELIX 9 AA9 PRO A 200 LEU A 204 5 5 HELIX 10 AB1 ASP A 228 CYS A 242 1 15 HELIX 11 AB2 PRO A 256 PHE A 260 5 5 HELIX 12 AB3 ALA A 261 ALA A 266 1 6 HELIX 13 AB4 PRO A 292 LEU A 301 1 10 HELIX 14 AB5 SER B 39 ALA B 50 1 12 HELIX 15 AB6 GLY B 58 GLU B 64 1 7 HELIX 16 AB7 GLN B 81 ALA B 86 1 6 HELIX 17 AB8 THR B 87 ASN B 94 1 8 HELIX 18 AB9 ASN B 94 MET B 109 1 16 HELIX 19 AC1 GLY B 110 LYS B 112 5 3 HELIX 20 AC2 ASN B 115 LYS B 130 1 16 HELIX 21 AC3 GLU B 144 GLY B 150 1 7 HELIX 22 AC4 CYS B 181 SER B 185 5 5 HELIX 23 AC5 PRO B 200 LEU B 204 5 5 HELIX 24 AC6 ASP B 228 CYS B 242 1 15 HELIX 25 AC7 ALA B 261 ALA B 266 1 6 HELIX 26 AC8 PRO B 292 LEU B 301 1 10 SHEET 1 AA1 6 LEU A 154 GLU A 156 0 SHEET 2 AA1 6 ARG A 134 THR A 139 1 N VAL A 137 O LEU A 155 SHEET 3 AA1 6 HIS A 52 SER A 57 1 N ILE A 55 O ILE A 138 SHEET 4 AA1 6 LEU A 244 VAL A 248 1 O LEU A 246 N ILE A 56 SHEET 5 AA1 6 VAL A 271 ASN A 275 1 O PHE A 274 N VAL A 247 SHEET 6 AA1 6 PHE A 287 GLN A 290 1 O PHE A 289 N GLU A 273 SHEET 1 AA2 2 TYR A 76 TRP A 77 0 SHEET 2 AA2 2 TRP A 80 GLN A 81 -1 O TRP A 80 N TRP A 77 SHEET 1 AA3 3 VAL A 172 GLU A 174 0 SHEET 2 AA3 3 GLY A 159 CYS A 166 -1 N THR A 164 O ALA A 173 SHEET 3 AA3 3 LEU A 216 VAL A 220 -1 O HIS A 219 N LYS A 163 SHEET 1 AA4 6 LEU B 154 GLU B 156 0 SHEET 2 AA4 6 ARG B 134 THR B 139 1 N VAL B 137 O LEU B 155 SHEET 3 AA4 6 HIS B 52 SER B 57 1 N ILE B 55 O ILE B 138 SHEET 4 AA4 6 LEU B 244 VAL B 248 1 O LEU B 246 N ILE B 56 SHEET 5 AA4 6 VAL B 271 ASN B 275 1 O PHE B 274 N VAL B 247 SHEET 6 AA4 6 PHE B 287 GLN B 290 1 O PHE B 289 N GLU B 273 SHEET 1 AA5 3 VAL B 172 GLU B 174 0 SHEET 2 AA5 3 GLY B 159 CYS B 166 -1 N THR B 164 O ALA B 173 SHEET 3 AA5 3 LEU B 216 VAL B 220 -1 O HIS B 219 N LYS B 163 LINK SG CYS A 166 ZN ZN A 600 1555 1555 2.32 LINK SG CYS A 169 ZN ZN A 600 1555 1555 2.22 LINK SG CYS A 207 ZN ZN A 600 1555 1555 2.29 LINK SG CYS A 212 ZN ZN A 600 1555 1555 2.37 LINK SG CYS B 166 ZN ZN B 600 1555 1555 2.33 LINK SG CYS B 169 ZN ZN B 600 1555 1555 2.26 LINK SG CYS B 207 ZN ZN B 600 1555 1555 2.33 LINK SG CYS B 212 ZN ZN B 600 1555 1555 2.27 CISPEP 1 SER A 178 PRO A 179 0 -4.98 CISPEP 2 TYR A 255 PRO A 256 0 0.40 CISPEP 3 SER B 178 PRO B 179 0 -6.17 CRYST1 41.624 112.528 56.083 90.00 90.03 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024025 0.000000 0.000013 0.00000 SCALE2 0.000000 0.008887 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017831 0.00000