data_8GBS # _entry.id 8GBS # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.394 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8GBS pdb_00008gbs 10.2210/pdb8gbs/pdb WWPDB D_1000272555 ? ? EMDB EMD-29921 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2023-04-19 2 'Structure model' 1 1 2023-04-26 3 'Structure model' 1 2 2023-05-17 4 'Structure model' 1 3 2024-06-19 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation 4 4 'Structure model' chem_comp_atom 5 4 'Structure model' chem_comp_bond 6 4 'Structure model' em_3d_fitting_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.pdbx_database_id_PubMed' 2 2 'Structure model' '_citation.title' 3 2 'Structure model' '_citation_author.name' 4 3 'Structure model' '_citation.journal_volume' 5 3 'Structure model' '_citation.page_first' 6 3 'Structure model' '_citation.page_last' 7 4 'Structure model' '_em_3d_fitting_list.initial_refinement_model_id' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8GBS _pdbx_database_status.recvd_initial_deposition_date 2023-02-28 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible N # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type EMDB . EMD-29921 'associated EM volume' EMDB . EMD-29922 'other EM volume' EMDB . EMD-29923 'other EM volume' EMDB . EMD-29924 'other EM volume' EMDB . EMD-29925 'other EM volume' # loop_ _pdbx_contact_author.id _pdbx_contact_author.email _pdbx_contact_author.name_first _pdbx_contact_author.name_last _pdbx_contact_author.name_mi _pdbx_contact_author.role _pdbx_contact_author.identifier_ORCID 2 grant_jensen@byu.edu Grant Jensen J. 'principal investigator/group leader' 0000-0003-1556-4864 3 mikhail@caltech.edu Mikhail Shapiro G. 'principal investigator/group leader' 0000-0002-0291-4215 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Dutka, P.' 1 0000-0003-3819-1618 'Metskas, L.A.' 2 0000-0002-8073-6960 'Hurt, R.C.' 3 0000-0002-4347-6901 'Salahshoor, H.' 4 ? 'Wang, T.U.' 5 ? 'Malounda, D.' 6 0000-0001-7086-9877 'Lu, G.' 7 0000-0002-4689-9686 'Chou, T.F.' 8 0000-0003-2410-2186 'Shapiro, M.G.' 9 0000-0002-0291-4215 'Jensen, J.J.' 10 0000-0003-1556-4864 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Structure _citation.journal_id_ASTM STRUE6 _citation.journal_id_CSD 2005 _citation.journal_id_ISSN 0969-2126 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 31 _citation.language ? _citation.page_first 518 _citation.page_last 528.e6 _citation.title 'Structure of Anabaena flos-aquae gas vesicles revealed by cryo-ET.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.str.2023.03.011 _citation.pdbx_database_id_PubMed 37040766 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Dutka, P.' 1 ? primary 'Metskas, L.A.' 2 ? primary 'Hurt, R.C.' 3 ? primary 'Salahshoor, H.' 4 ? primary 'Wang, T.Y.' 5 ? primary 'Malounda, D.' 6 ? primary 'Lu, G.J.' 7 ? primary 'Chou, T.F.' 8 ? primary 'Shapiro, M.G.' 9 ? primary 'Jensen, G.J.' 10 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Gas vesicle structural protein' 7534.721 4 ? ? ? ? 2 polymer nat 'Gas vesicle protein C' 2826.475 1 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'GVP, Gas vesicle structural protein A, GvpA' 2 'Gas vesicle structural protein C, GvpC' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no MAVEKTNSSSSLAEVIDRILDKGIVIDAWVRVSLVGIELLAIEARIVIASVETYLKYAEAVGLTQSAAVPA MAVEKTNSSSSLAEVIDRILDKGIVIDAWVRVSLVGIELLAIEARIVIASVETYLKYAEAVGLTQSAAVPA A1,A2,A4,A3 ? 2 'polypeptide(L)' no no ;(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK) ; XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 VAL n 1 4 GLU n 1 5 LYS n 1 6 THR n 1 7 ASN n 1 8 SER n 1 9 SER n 1 10 SER n 1 11 SER n 1 12 LEU n 1 13 ALA n 1 14 GLU n 1 15 VAL n 1 16 ILE n 1 17 ASP n 1 18 ARG n 1 19 ILE n 1 20 LEU n 1 21 ASP n 1 22 LYS n 1 23 GLY n 1 24 ILE n 1 25 VAL n 1 26 ILE n 1 27 ASP n 1 28 ALA n 1 29 TRP n 1 30 VAL n 1 31 ARG n 1 32 VAL n 1 33 SER n 1 34 LEU n 1 35 VAL n 1 36 GLY n 1 37 ILE n 1 38 GLU n 1 39 LEU n 1 40 LEU n 1 41 ALA n 1 42 ILE n 1 43 GLU n 1 44 ALA n 1 45 ARG n 1 46 ILE n 1 47 VAL n 1 48 ILE n 1 49 ALA n 1 50 SER n 1 51 VAL n 1 52 GLU n 1 53 THR n 1 54 TYR n 1 55 LEU n 1 56 LYS n 1 57 TYR n 1 58 ALA n 1 59 GLU n 1 60 ALA n 1 61 VAL n 1 62 GLY n 1 63 LEU n 1 64 THR n 1 65 GLN n 1 66 SER n 1 67 ALA n 1 68 ALA n 1 69 VAL n 1 70 PRO n 1 71 ALA n 2 1 UNK n 2 2 UNK n 2 3 UNK n 2 4 UNK n 2 5 UNK n 2 6 UNK n 2 7 UNK n 2 8 UNK n 2 9 UNK n 2 10 UNK n 2 11 UNK n 2 12 UNK n 2 13 UNK n 2 14 UNK n 2 15 UNK n 2 16 UNK n 2 17 UNK n 2 18 UNK n 2 19 UNK n 2 20 UNK n 2 21 UNK n 2 22 UNK n 2 23 UNK n 2 24 UNK n 2 25 UNK n 2 26 UNK n 2 27 UNK n 2 28 UNK n 2 29 UNK n 2 30 UNK n 2 31 UNK n 2 32 UNK n 2 33 UNK n # loop_ _entity_src_nat.entity_id _entity_src_nat.pdbx_src_id _entity_src_nat.pdbx_alt_source_flag _entity_src_nat.pdbx_beg_seq_num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.common_name _entity_src_nat.pdbx_organism_scientific _entity_src_nat.pdbx_ncbi_taxonomy_id _entity_src_nat.genus _entity_src_nat.species _entity_src_nat.strain _entity_src_nat.tissue _entity_src_nat.tissue_fraction _entity_src_nat.pdbx_secretion _entity_src_nat.pdbx_fragment _entity_src_nat.pdbx_variant _entity_src_nat.pdbx_cell_line _entity_src_nat.pdbx_atcc _entity_src_nat.pdbx_cellular_location _entity_src_nat.pdbx_organ _entity_src_nat.pdbx_organelle _entity_src_nat.pdbx_cell _entity_src_nat.pdbx_plasmid_name _entity_src_nat.pdbx_plasmid_details _entity_src_nat.details 1 1 sample 1 71 'Anabaena flos-aquae' 'Dolichospermum flos-aquae' 1166 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 1 33 'Anabaena flos-aquae' 'Dolichospermum flos-aquae' 1166 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 UNK 'L-peptide linking' . UNKNOWN ? 'C4 H9 N O2' 103.120 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A1 . n A 1 2 ALA 2 2 2 ALA ALA A1 . n A 1 3 VAL 3 3 3 VAL VAL A1 . n A 1 4 GLU 4 4 4 GLU GLU A1 . n A 1 5 LYS 5 5 5 LYS LYS A1 . n A 1 6 THR 6 6 6 THR THR A1 . n A 1 7 ASN 7 7 7 ASN ASN A1 . n A 1 8 SER 8 8 8 SER SER A1 . n A 1 9 SER 9 9 9 SER SER A1 . n A 1 10 SER 10 10 10 SER SER A1 . n A 1 11 SER 11 11 11 SER SER A1 . n A 1 12 LEU 12 12 12 LEU LEU A1 . n A 1 13 ALA 13 13 13 ALA ALA A1 . n A 1 14 GLU 14 14 14 GLU GLU A1 . n A 1 15 VAL 15 15 15 VAL VAL A1 . n A 1 16 ILE 16 16 16 ILE ILE A1 . n A 1 17 ASP 17 17 17 ASP ASP A1 . n A 1 18 ARG 18 18 18 ARG ARG A1 . n A 1 19 ILE 19 19 19 ILE ILE A1 . n A 1 20 LEU 20 20 20 LEU LEU A1 . n A 1 21 ASP 21 21 21 ASP ASP A1 . n A 1 22 LYS 22 22 22 LYS LYS A1 . n A 1 23 GLY 23 23 23 GLY GLY A1 . n A 1 24 ILE 24 24 24 ILE ILE A1 . n A 1 25 VAL 25 25 25 VAL VAL A1 . n A 1 26 ILE 26 26 26 ILE ILE A1 . n A 1 27 ASP 27 27 27 ASP ASP A1 . n A 1 28 ALA 28 28 28 ALA ALA A1 . n A 1 29 TRP 29 29 29 TRP TRP A1 . n A 1 30 VAL 30 30 30 VAL VAL A1 . n A 1 31 ARG 31 31 31 ARG ARG A1 . n A 1 32 VAL 32 32 32 VAL VAL A1 . n A 1 33 SER 33 33 33 SER SER A1 . n A 1 34 LEU 34 34 34 LEU LEU A1 . n A 1 35 VAL 35 35 35 VAL VAL A1 . n A 1 36 GLY 36 36 36 GLY GLY A1 . n A 1 37 ILE 37 37 37 ILE ILE A1 . n A 1 38 GLU 38 38 38 GLU GLU A1 . n A 1 39 LEU 39 39 39 LEU LEU A1 . n A 1 40 LEU 40 40 40 LEU LEU A1 . n A 1 41 ALA 41 41 41 ALA ALA A1 . n A 1 42 ILE 42 42 42 ILE ILE A1 . n A 1 43 GLU 43 43 43 GLU GLU A1 . n A 1 44 ALA 44 44 44 ALA ALA A1 . n A 1 45 ARG 45 45 45 ARG ARG A1 . n A 1 46 ILE 46 46 46 ILE ILE A1 . n A 1 47 VAL 47 47 47 VAL VAL A1 . n A 1 48 ILE 48 48 48 ILE ILE A1 . n A 1 49 ALA 49 49 49 ALA ALA A1 . n A 1 50 SER 50 50 50 SER SER A1 . n A 1 51 VAL 51 51 51 VAL VAL A1 . n A 1 52 GLU 52 52 52 GLU GLU A1 . n A 1 53 THR 53 53 53 THR THR A1 . n A 1 54 TYR 54 54 54 TYR TYR A1 . n A 1 55 LEU 55 55 55 LEU LEU A1 . n A 1 56 LYS 56 56 56 LYS LYS A1 . n A 1 57 TYR 57 57 57 TYR TYR A1 . n A 1 58 ALA 58 58 58 ALA ALA A1 . n A 1 59 GLU 59 59 59 GLU GLU A1 . n A 1 60 ALA 60 60 60 ALA ALA A1 . n A 1 61 VAL 61 61 61 VAL VAL A1 . n A 1 62 GLY 62 62 62 GLY GLY A1 . n A 1 63 LEU 63 63 63 LEU LEU A1 . n A 1 64 THR 64 64 64 THR THR A1 . n A 1 65 GLN 65 65 65 GLN GLN A1 . n A 1 66 SER 66 66 66 SER SER A1 . n A 1 67 ALA 67 67 ? ? ? A1 . n A 1 68 ALA 68 68 ? ? ? A1 . n A 1 69 VAL 69 69 ? ? ? A1 . n A 1 70 PRO 70 70 ? ? ? A1 . n A 1 71 ALA 71 71 ? ? ? A1 . n B 1 1 MET 1 1 ? ? ? A2 . n B 1 2 ALA 2 2 2 ALA ALA A2 . n B 1 3 VAL 3 3 3 VAL VAL A2 . n B 1 4 GLU 4 4 4 GLU GLU A2 . n B 1 5 LYS 5 5 5 LYS LYS A2 . n B 1 6 THR 6 6 6 THR THR A2 . n B 1 7 ASN 7 7 7 ASN ASN A2 . n B 1 8 SER 8 8 8 SER SER A2 . n B 1 9 SER 9 9 9 SER SER A2 . n B 1 10 SER 10 10 10 SER SER A2 . n B 1 11 SER 11 11 11 SER SER A2 . n B 1 12 LEU 12 12 12 LEU LEU A2 . n B 1 13 ALA 13 13 13 ALA ALA A2 . n B 1 14 GLU 14 14 14 GLU GLU A2 . n B 1 15 VAL 15 15 15 VAL VAL A2 . n B 1 16 ILE 16 16 16 ILE ILE A2 . n B 1 17 ASP 17 17 17 ASP ASP A2 . n B 1 18 ARG 18 18 18 ARG ARG A2 . n B 1 19 ILE 19 19 19 ILE ILE A2 . n B 1 20 LEU 20 20 20 LEU LEU A2 . n B 1 21 ASP 21 21 21 ASP ASP A2 . n B 1 22 LYS 22 22 22 LYS LYS A2 . n B 1 23 GLY 23 23 23 GLY GLY A2 . n B 1 24 ILE 24 24 24 ILE ILE A2 . n B 1 25 VAL 25 25 25 VAL VAL A2 . n B 1 26 ILE 26 26 26 ILE ILE A2 . n B 1 27 ASP 27 27 27 ASP ASP A2 . n B 1 28 ALA 28 28 28 ALA ALA A2 . n B 1 29 TRP 29 29 29 TRP TRP A2 . n B 1 30 VAL 30 30 30 VAL VAL A2 . n B 1 31 ARG 31 31 31 ARG ARG A2 . n B 1 32 VAL 32 32 32 VAL VAL A2 . n B 1 33 SER 33 33 33 SER SER A2 . n B 1 34 LEU 34 34 34 LEU LEU A2 . n B 1 35 VAL 35 35 35 VAL VAL A2 . n B 1 36 GLY 36 36 36 GLY GLY A2 . n B 1 37 ILE 37 37 37 ILE ILE A2 . n B 1 38 GLU 38 38 38 GLU GLU A2 . n B 1 39 LEU 39 39 39 LEU LEU A2 . n B 1 40 LEU 40 40 40 LEU LEU A2 . n B 1 41 ALA 41 41 41 ALA ALA A2 . n B 1 42 ILE 42 42 42 ILE ILE A2 . n B 1 43 GLU 43 43 43 GLU GLU A2 . n B 1 44 ALA 44 44 44 ALA ALA A2 . n B 1 45 ARG 45 45 45 ARG ARG A2 . n B 1 46 ILE 46 46 46 ILE ILE A2 . n B 1 47 VAL 47 47 47 VAL VAL A2 . n B 1 48 ILE 48 48 48 ILE ILE A2 . n B 1 49 ALA 49 49 49 ALA ALA A2 . n B 1 50 SER 50 50 50 SER SER A2 . n B 1 51 VAL 51 51 51 VAL VAL A2 . n B 1 52 GLU 52 52 52 GLU GLU A2 . n B 1 53 THR 53 53 53 THR THR A2 . n B 1 54 TYR 54 54 54 TYR TYR A2 . n B 1 55 LEU 55 55 55 LEU LEU A2 . n B 1 56 LYS 56 56 56 LYS LYS A2 . n B 1 57 TYR 57 57 57 TYR TYR A2 . n B 1 58 ALA 58 58 58 ALA ALA A2 . n B 1 59 GLU 59 59 59 GLU GLU A2 . n B 1 60 ALA 60 60 60 ALA ALA A2 . n B 1 61 VAL 61 61 61 VAL VAL A2 . n B 1 62 GLY 62 62 62 GLY GLY A2 . n B 1 63 LEU 63 63 63 LEU LEU A2 . n B 1 64 THR 64 64 64 THR THR A2 . n B 1 65 GLN 65 65 65 GLN GLN A2 . n B 1 66 SER 66 66 66 SER SER A2 . n B 1 67 ALA 67 67 ? ? ? A2 . n B 1 68 ALA 68 68 ? ? ? A2 . n B 1 69 VAL 69 69 ? ? ? A2 . n B 1 70 PRO 70 70 ? ? ? A2 . n B 1 71 ALA 71 71 ? ? ? A2 . n C 1 1 MET 1 1 ? ? ? A4 . n C 1 2 ALA 2 2 2 ALA ALA A4 . n C 1 3 VAL 3 3 3 VAL VAL A4 . n C 1 4 GLU 4 4 4 GLU GLU A4 . n C 1 5 LYS 5 5 5 LYS LYS A4 . n C 1 6 THR 6 6 6 THR THR A4 . n C 1 7 ASN 7 7 7 ASN ASN A4 . n C 1 8 SER 8 8 8 SER SER A4 . n C 1 9 SER 9 9 9 SER SER A4 . n C 1 10 SER 10 10 10 SER SER A4 . n C 1 11 SER 11 11 11 SER SER A4 . n C 1 12 LEU 12 12 12 LEU LEU A4 . n C 1 13 ALA 13 13 13 ALA ALA A4 . n C 1 14 GLU 14 14 14 GLU GLU A4 . n C 1 15 VAL 15 15 15 VAL VAL A4 . n C 1 16 ILE 16 16 16 ILE ILE A4 . n C 1 17 ASP 17 17 17 ASP ASP A4 . n C 1 18 ARG 18 18 18 ARG ARG A4 . n C 1 19 ILE 19 19 19 ILE ILE A4 . n C 1 20 LEU 20 20 20 LEU LEU A4 . n C 1 21 ASP 21 21 21 ASP ASP A4 . n C 1 22 LYS 22 22 22 LYS LYS A4 . n C 1 23 GLY 23 23 23 GLY GLY A4 . n C 1 24 ILE 24 24 24 ILE ILE A4 . n C 1 25 VAL 25 25 25 VAL VAL A4 . n C 1 26 ILE 26 26 26 ILE ILE A4 . n C 1 27 ASP 27 27 27 ASP ASP A4 . n C 1 28 ALA 28 28 28 ALA ALA A4 . n C 1 29 TRP 29 29 29 TRP TRP A4 . n C 1 30 VAL 30 30 30 VAL VAL A4 . n C 1 31 ARG 31 31 31 ARG ARG A4 . n C 1 32 VAL 32 32 32 VAL VAL A4 . n C 1 33 SER 33 33 33 SER SER A4 . n C 1 34 LEU 34 34 34 LEU LEU A4 . n C 1 35 VAL 35 35 35 VAL VAL A4 . n C 1 36 GLY 36 36 36 GLY GLY A4 . n C 1 37 ILE 37 37 37 ILE ILE A4 . n C 1 38 GLU 38 38 38 GLU GLU A4 . n C 1 39 LEU 39 39 39 LEU LEU A4 . n C 1 40 LEU 40 40 40 LEU LEU A4 . n C 1 41 ALA 41 41 41 ALA ALA A4 . n C 1 42 ILE 42 42 42 ILE ILE A4 . n C 1 43 GLU 43 43 43 GLU GLU A4 . n C 1 44 ALA 44 44 44 ALA ALA A4 . n C 1 45 ARG 45 45 45 ARG ARG A4 . n C 1 46 ILE 46 46 46 ILE ILE A4 . n C 1 47 VAL 47 47 47 VAL VAL A4 . n C 1 48 ILE 48 48 48 ILE ILE A4 . n C 1 49 ALA 49 49 49 ALA ALA A4 . n C 1 50 SER 50 50 50 SER SER A4 . n C 1 51 VAL 51 51 51 VAL VAL A4 . n C 1 52 GLU 52 52 52 GLU GLU A4 . n C 1 53 THR 53 53 53 THR THR A4 . n C 1 54 TYR 54 54 54 TYR TYR A4 . n C 1 55 LEU 55 55 55 LEU LEU A4 . n C 1 56 LYS 56 56 56 LYS LYS A4 . n C 1 57 TYR 57 57 57 TYR TYR A4 . n C 1 58 ALA 58 58 58 ALA ALA A4 . n C 1 59 GLU 59 59 59 GLU GLU A4 . n C 1 60 ALA 60 60 60 ALA ALA A4 . n C 1 61 VAL 61 61 61 VAL VAL A4 . n C 1 62 GLY 62 62 62 GLY GLY A4 . n C 1 63 LEU 63 63 63 LEU LEU A4 . n C 1 64 THR 64 64 64 THR THR A4 . n C 1 65 GLN 65 65 65 GLN GLN A4 . n C 1 66 SER 66 66 66 SER SER A4 . n C 1 67 ALA 67 67 ? ? ? A4 . n C 1 68 ALA 68 68 ? ? ? A4 . n C 1 69 VAL 69 69 ? ? ? A4 . n C 1 70 PRO 70 70 ? ? ? A4 . n C 1 71 ALA 71 71 ? ? ? A4 . n D 2 1 UNK 1 85 85 UNK ALA C . n D 2 2 UNK 2 86 86 UNK ALA C . n D 2 3 UNK 3 87 87 UNK ALA C . n D 2 4 UNK 4 88 88 UNK ALA C . n D 2 5 UNK 5 89 89 UNK ALA C . n D 2 6 UNK 6 90 90 UNK ALA C . n D 2 7 UNK 7 91 91 UNK ALA C . n D 2 8 UNK 8 92 92 UNK ALA C . n D 2 9 UNK 9 93 93 UNK ALA C . n D 2 10 UNK 10 94 94 UNK ALA C . n D 2 11 UNK 11 95 95 UNK ALA C . n D 2 12 UNK 12 96 96 UNK ALA C . n D 2 13 UNK 13 97 97 UNK ALA C . n D 2 14 UNK 14 98 98 UNK ALA C . n D 2 15 UNK 15 99 99 UNK ALA C . n D 2 16 UNK 16 100 100 UNK ALA C . n D 2 17 UNK 17 101 101 UNK ALA C . n D 2 18 UNK 18 102 102 UNK ALA C . n D 2 19 UNK 19 103 103 UNK ALA C . n D 2 20 UNK 20 104 104 UNK ALA C . n D 2 21 UNK 21 105 105 UNK ALA C . n D 2 22 UNK 22 106 106 UNK ALA C . n D 2 23 UNK 23 107 107 UNK ALA C . n D 2 24 UNK 24 108 108 UNK ALA C . n D 2 25 UNK 25 109 109 UNK ALA C . n D 2 26 UNK 26 110 110 UNK ALA C . n D 2 27 UNK 27 111 111 UNK ALA C . n D 2 28 UNK 28 112 112 UNK ALA C . n D 2 29 UNK 29 113 113 UNK ALA C . n D 2 30 UNK 30 114 114 UNK ALA C . n D 2 31 UNK 31 115 115 UNK ALA C . n D 2 32 UNK 32 116 116 UNK ALA C . n D 2 33 UNK 33 117 117 UNK ALA C . n E 1 1 MET 1 1 ? ? ? A3 . n E 1 2 ALA 2 2 2 ALA ALA A3 . n E 1 3 VAL 3 3 3 VAL VAL A3 . n E 1 4 GLU 4 4 4 GLU GLU A3 . n E 1 5 LYS 5 5 5 LYS LYS A3 . n E 1 6 THR 6 6 6 THR THR A3 . n E 1 7 ASN 7 7 7 ASN ASN A3 . n E 1 8 SER 8 8 8 SER SER A3 . n E 1 9 SER 9 9 9 SER SER A3 . n E 1 10 SER 10 10 10 SER SER A3 . n E 1 11 SER 11 11 11 SER SER A3 . n E 1 12 LEU 12 12 12 LEU LEU A3 . n E 1 13 ALA 13 13 13 ALA ALA A3 . n E 1 14 GLU 14 14 14 GLU GLU A3 . n E 1 15 VAL 15 15 15 VAL VAL A3 . n E 1 16 ILE 16 16 16 ILE ILE A3 . n E 1 17 ASP 17 17 17 ASP ASP A3 . n E 1 18 ARG 18 18 18 ARG ARG A3 . n E 1 19 ILE 19 19 19 ILE ILE A3 . n E 1 20 LEU 20 20 20 LEU LEU A3 . n E 1 21 ASP 21 21 21 ASP ASP A3 . n E 1 22 LYS 22 22 22 LYS LYS A3 . n E 1 23 GLY 23 23 23 GLY GLY A3 . n E 1 24 ILE 24 24 24 ILE ILE A3 . n E 1 25 VAL 25 25 25 VAL VAL A3 . n E 1 26 ILE 26 26 26 ILE ILE A3 . n E 1 27 ASP 27 27 27 ASP ASP A3 . n E 1 28 ALA 28 28 28 ALA ALA A3 . n E 1 29 TRP 29 29 29 TRP TRP A3 . n E 1 30 VAL 30 30 30 VAL VAL A3 . n E 1 31 ARG 31 31 31 ARG ARG A3 . n E 1 32 VAL 32 32 32 VAL VAL A3 . n E 1 33 SER 33 33 33 SER SER A3 . n E 1 34 LEU 34 34 34 LEU LEU A3 . n E 1 35 VAL 35 35 35 VAL VAL A3 . n E 1 36 GLY 36 36 36 GLY GLY A3 . n E 1 37 ILE 37 37 37 ILE ILE A3 . n E 1 38 GLU 38 38 38 GLU GLU A3 . n E 1 39 LEU 39 39 39 LEU LEU A3 . n E 1 40 LEU 40 40 40 LEU LEU A3 . n E 1 41 ALA 41 41 41 ALA ALA A3 . n E 1 42 ILE 42 42 42 ILE ILE A3 . n E 1 43 GLU 43 43 43 GLU GLU A3 . n E 1 44 ALA 44 44 44 ALA ALA A3 . n E 1 45 ARG 45 45 45 ARG ARG A3 . n E 1 46 ILE 46 46 46 ILE ILE A3 . n E 1 47 VAL 47 47 47 VAL VAL A3 . n E 1 48 ILE 48 48 48 ILE ILE A3 . n E 1 49 ALA 49 49 49 ALA ALA A3 . n E 1 50 SER 50 50 50 SER SER A3 . n E 1 51 VAL 51 51 51 VAL VAL A3 . n E 1 52 GLU 52 52 52 GLU GLU A3 . n E 1 53 THR 53 53 53 THR THR A3 . n E 1 54 TYR 54 54 54 TYR TYR A3 . n E 1 55 LEU 55 55 55 LEU LEU A3 . n E 1 56 LYS 56 56 56 LYS LYS A3 . n E 1 57 TYR 57 57 57 TYR TYR A3 . n E 1 58 ALA 58 58 58 ALA ALA A3 . n E 1 59 GLU 59 59 59 GLU GLU A3 . n E 1 60 ALA 60 60 60 ALA ALA A3 . n E 1 61 VAL 61 61 61 VAL VAL A3 . n E 1 62 GLY 62 62 62 GLY GLY A3 . n E 1 63 LEU 63 63 63 LEU LEU A3 . n E 1 64 THR 64 64 64 THR THR A3 . n E 1 65 GLN 65 65 65 GLN GLN A3 . n E 1 66 SER 66 66 66 SER SER A3 . n E 1 67 ALA 67 67 ? ? ? A3 . n E 1 68 ALA 68 68 ? ? ? A3 . n E 1 69 VAL 69 69 ? ? ? A3 . n E 1 70 PRO 70 70 ? ? ? A3 . n E 1 71 ALA 71 71 ? ? ? A3 . n # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A1 VAL 30 ? CG1 ? A VAL 30 CG1 2 1 Y 1 A1 VAL 30 ? CG2 ? A VAL 30 CG2 3 1 Y 1 A2 VAL 30 ? CG1 ? B VAL 30 CG1 4 1 Y 1 A2 VAL 30 ? CG2 ? B VAL 30 CG2 5 1 Y 1 A4 VAL 30 ? CG1 ? C VAL 30 CG1 6 1 Y 1 A4 VAL 30 ? CG2 ? C VAL 30 CG2 7 1 Y 1 A3 VAL 30 ? CG1 ? E VAL 30 CG1 8 1 Y 1 A3 VAL 30 ? CG2 ? E VAL 30 CG2 # _software.citation_id ? _software.classification 'model building' _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location https://www.rbvi.ucsf.edu/chimerax/ _software.mods ? _software.name 'UCSF ChimeraX' _software.os macOS _software.os_version ? _software.type package _software.version 1.5/v9 _software.pdbx_ordinal 1 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8GBS _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8GBS _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8GBS _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 8GBS _struct.title 'Integrative model of the native Ana GV shell' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8GBS _struct_keywords.text 'Gas vesicles, Flotation, cyanobacteria, CYTOSOLIC PROTEIN' _struct_keywords.pdbx_keywords 'CYTOSOLIC PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 1 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP GVPA_DOLFA P10397 ? 1 MAVEKTNSSSSLAEVIDRILDKGIVIDAWVRVSLVGIELLAIEARIVIASVETYLKYAEAVGLTQSAAVPA 1 2 PDB 8GBS 8GBS ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8GBS A1 1 ? 71 ? P10397 1 ? 71 ? 1 71 2 1 8GBS A2 1 ? 71 ? P10397 1 ? 71 ? 1 71 3 1 8GBS A4 1 ? 71 ? P10397 1 ? 71 ? 1 71 4 2 8GBS C 1 ? 33 ? 8GBS 85 ? 117 ? 85 117 5 1 8GBS A3 1 ? 71 ? P10397 1 ? 71 ? 1 71 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_auth_evidence.id _pdbx_struct_assembly_auth_evidence.assembly_id _pdbx_struct_assembly_auth_evidence.experimental_support _pdbx_struct_assembly_auth_evidence.details 1 1 homology ? 2 1 'mass spectrometry' ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 11 ? GLY A 23 ? SER A1 11 GLY A1 23 1 ? 13 HELX_P HELX_P2 AA2 SER A 50 ? GLY A 62 ? SER A1 50 GLY A1 62 1 ? 13 HELX_P HELX_P3 AA3 SER B 11 ? GLY B 23 ? SER A2 11 GLY A2 23 1 ? 13 HELX_P HELX_P4 AA4 SER B 50 ? GLY B 62 ? SER A2 50 GLY A2 62 1 ? 13 HELX_P HELX_P5 AA5 SER C 11 ? GLY C 23 ? SER A4 11 GLY A4 23 1 ? 13 HELX_P HELX_P6 AA6 SER C 50 ? GLY C 62 ? SER A4 50 GLY A4 62 1 ? 13 HELX_P HELX_P7 AA7 UNK D 2 ? UNK D 32 ? UNK C 86 UNK C 116 1 ? 31 HELX_P HELX_P8 AA8 SER E 11 ? GLY E 23 ? SER A3 11 GLY A3 23 1 ? 13 HELX_P HELX_P9 AA9 SER E 50 ? GLY E 62 ? SER A3 50 GLY A3 62 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 8 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA1 6 7 ? anti-parallel AA1 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ILE A 24 ? LEU A 34 ? ILE A1 24 LEU A1 34 AA1 2 ILE A 37 ? ILE A 48 ? ILE A1 37 ILE A1 48 AA1 3 ILE B 24 ? LEU B 34 ? ILE A2 24 LEU A2 34 AA1 4 ILE B 37 ? ILE B 48 ? ILE A2 37 ILE A2 48 AA1 5 ILE E 24 ? LEU E 34 ? ILE A3 24 LEU A3 34 AA1 6 ILE E 37 ? ILE E 48 ? ILE A3 37 ILE A3 48 AA1 7 ILE C 24 ? LEU C 34 ? ILE A4 24 LEU A4 34 AA1 8 ILE C 37 ? ILE C 48 ? ILE A4 37 ILE A4 48 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N LEU A 34 ? N LEU A1 34 O ILE A 37 ? O ILE A1 37 AA1 2 3 N ALA A 41 ? N ALA A1 41 O SER B 33 ? O SER A2 33 AA1 3 4 N LEU B 34 ? N LEU A2 34 O ILE B 37 ? O ILE A2 37 AA1 4 5 N ALA B 41 ? N ALA A2 41 O SER E 33 ? O SER A3 33 AA1 5 6 N LEU E 34 ? N LEU A3 34 O ILE E 37 ? O ILE A3 37 AA1 6 7 O ALA E 41 ? O ALA A3 41 N SER C 33 ? N SER A4 33 AA1 7 8 N LEU C 34 ? N LEU A4 34 O ILE C 37 ? O ILE A4 37 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 VAL A1 35 ? ? 43.62 28.03 2 1 VAL A2 35 ? ? 43.64 28.10 3 1 VAL A4 35 ? ? 43.66 28.06 4 1 VAL A3 35 ? ? 43.62 28.02 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 8GBS _em_3d_fitting.method ? _em_3d_fitting.target_criteria 'Cross-correlation, occupancy' _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol 'RIGID BODY FIT' # _em_3d_fitting_list.id 1 _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.pdb_entry_id 7R1C _em_3d_fitting_list.pdb_chain_id ? _em_3d_fitting_list.pdb_chain_residue_range ? _em_3d_fitting_list.details ? _em_3d_fitting_list.chain_id ? _em_3d_fitting_list.chain_residue_range ? _em_3d_fitting_list.source_name PDB _em_3d_fitting_list.type 'experimental model' _em_3d_fitting_list.accession_code 7R1C _em_3d_fitting_list.initial_refinement_model_id 1 # _em_3d_reconstruction.entry_id 8GBS _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 8 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 5874 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type ? # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details '10 mM HEPES, pH 7.5' _em_buffer.pH 7.5 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source NATURAL _em_entity_assembly.type 'ORGANELLE OR CELLULAR COMPONENT' _em_entity_assembly.name 'Gas vesicles (GVs)' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list '1, 2' # _em_imaging.entry_id 8GBS _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 1500 _em_imaging.nominal_defocus_max 3500 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type C-flat-2/2 _em_sample_support.details ? _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_vitrification.entry_id 8GBS _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE-PROPANE _em_vitrification.humidity 100 _em_vitrification.temp ? _em_vitrification.chamber_temperature 277 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details 'blot force 3, blot time 4 s' # _em_experiment.entry_id 8GBS _em_experiment.id 1 _em_experiment.reconstruction_method TOMOGRAPHY _em_experiment.aggregation_state 'HELICAL ARRAY' _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A1 MET 1 ? A MET 1 2 1 Y 1 A1 ALA 67 ? A ALA 67 3 1 Y 1 A1 ALA 68 ? A ALA 68 4 1 Y 1 A1 VAL 69 ? A VAL 69 5 1 Y 1 A1 PRO 70 ? A PRO 70 6 1 Y 1 A1 ALA 71 ? A ALA 71 7 1 Y 1 A2 MET 1 ? B MET 1 8 1 Y 1 A2 ALA 67 ? B ALA 67 9 1 Y 1 A2 ALA 68 ? B ALA 68 10 1 Y 1 A2 VAL 69 ? B VAL 69 11 1 Y 1 A2 PRO 70 ? B PRO 70 12 1 Y 1 A2 ALA 71 ? B ALA 71 13 1 Y 1 A4 MET 1 ? C MET 1 14 1 Y 1 A4 ALA 67 ? C ALA 67 15 1 Y 1 A4 ALA 68 ? C ALA 68 16 1 Y 1 A4 VAL 69 ? C VAL 69 17 1 Y 1 A4 PRO 70 ? C PRO 70 18 1 Y 1 A4 ALA 71 ? C ALA 71 19 1 Y 1 A3 MET 1 ? E MET 1 20 1 Y 1 A3 ALA 67 ? E ALA 67 21 1 Y 1 A3 ALA 68 ? E ALA 68 22 1 Y 1 A3 VAL 69 ? E VAL 69 23 1 Y 1 A3 PRO 70 ? E PRO 70 24 1 Y 1 A3 ALA 71 ? E ALA 71 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 ILE N N N N 123 ILE CA C N S 124 ILE C C N N 125 ILE O O N N 126 ILE CB C N S 127 ILE CG1 C N N 128 ILE CG2 C N N 129 ILE CD1 C N N 130 ILE OXT O N N 131 ILE H H N N 132 ILE H2 H N N 133 ILE HA H N N 134 ILE HB H N N 135 ILE HG12 H N N 136 ILE HG13 H N N 137 ILE HG21 H N N 138 ILE HG22 H N N 139 ILE HG23 H N N 140 ILE HD11 H N N 141 ILE HD12 H N N 142 ILE HD13 H N N 143 ILE HXT H N N 144 LEU N N N N 145 LEU CA C N S 146 LEU C C N N 147 LEU O O N N 148 LEU CB C N N 149 LEU CG C N N 150 LEU CD1 C N N 151 LEU CD2 C N N 152 LEU OXT O N N 153 LEU H H N N 154 LEU H2 H N N 155 LEU HA H N N 156 LEU HB2 H N N 157 LEU HB3 H N N 158 LEU HG H N N 159 LEU HD11 H N N 160 LEU HD12 H N N 161 LEU HD13 H N N 162 LEU HD21 H N N 163 LEU HD22 H N N 164 LEU HD23 H N N 165 LEU HXT H N N 166 LYS N N N N 167 LYS CA C N S 168 LYS C C N N 169 LYS O O N N 170 LYS CB C N N 171 LYS CG C N N 172 LYS CD C N N 173 LYS CE C N N 174 LYS NZ N N N 175 LYS OXT O N N 176 LYS H H N N 177 LYS H2 H N N 178 LYS HA H N N 179 LYS HB2 H N N 180 LYS HB3 H N N 181 LYS HG2 H N N 182 LYS HG3 H N N 183 LYS HD2 H N N 184 LYS HD3 H N N 185 LYS HE2 H N N 186 LYS HE3 H N N 187 LYS HZ1 H N N 188 LYS HZ2 H N N 189 LYS HZ3 H N N 190 LYS HXT H N N 191 MET N N N N 192 MET CA C N S 193 MET C C N N 194 MET O O N N 195 MET CB C N N 196 MET CG C N N 197 MET SD S N N 198 MET CE C N N 199 MET OXT O N N 200 MET H H N N 201 MET H2 H N N 202 MET HA H N N 203 MET HB2 H N N 204 MET HB3 H N N 205 MET HG2 H N N 206 MET HG3 H N N 207 MET HE1 H N N 208 MET HE2 H N N 209 MET HE3 H N N 210 MET HXT H N N 211 PRO N N N N 212 PRO CA C N S 213 PRO C C N N 214 PRO O O N N 215 PRO CB C N N 216 PRO CG C N N 217 PRO CD C N N 218 PRO OXT O N N 219 PRO H H N N 220 PRO HA H N N 221 PRO HB2 H N N 222 PRO HB3 H N N 223 PRO HG2 H N N 224 PRO HG3 H N N 225 PRO HD2 H N N 226 PRO HD3 H N N 227 PRO HXT H N N 228 SER N N N N 229 SER CA C N S 230 SER C C N N 231 SER O O N N 232 SER CB C N N 233 SER OG O N N 234 SER OXT O N N 235 SER H H N N 236 SER H2 H N N 237 SER HA H N N 238 SER HB2 H N N 239 SER HB3 H N N 240 SER HG H N N 241 SER HXT H N N 242 THR N N N N 243 THR CA C N S 244 THR C C N N 245 THR O O N N 246 THR CB C N R 247 THR OG1 O N N 248 THR CG2 C N N 249 THR OXT O N N 250 THR H H N N 251 THR H2 H N N 252 THR HA H N N 253 THR HB H N N 254 THR HG1 H N N 255 THR HG21 H N N 256 THR HG22 H N N 257 THR HG23 H N N 258 THR HXT H N N 259 TRP N N N N 260 TRP CA C N S 261 TRP C C N N 262 TRP O O N N 263 TRP CB C N N 264 TRP CG C Y N 265 TRP CD1 C Y N 266 TRP CD2 C Y N 267 TRP NE1 N Y N 268 TRP CE2 C Y N 269 TRP CE3 C Y N 270 TRP CZ2 C Y N 271 TRP CZ3 C Y N 272 TRP CH2 C Y N 273 TRP OXT O N N 274 TRP H H N N 275 TRP H2 H N N 276 TRP HA H N N 277 TRP HB2 H N N 278 TRP HB3 H N N 279 TRP HD1 H N N 280 TRP HE1 H N N 281 TRP HE3 H N N 282 TRP HZ2 H N N 283 TRP HZ3 H N N 284 TRP HH2 H N N 285 TRP HXT H N N 286 TYR N N N N 287 TYR CA C N S 288 TYR C C N N 289 TYR O O N N 290 TYR CB C N N 291 TYR CG C Y N 292 TYR CD1 C Y N 293 TYR CD2 C Y N 294 TYR CE1 C Y N 295 TYR CE2 C Y N 296 TYR CZ C Y N 297 TYR OH O N N 298 TYR OXT O N N 299 TYR H H N N 300 TYR H2 H N N 301 TYR HA H N N 302 TYR HB2 H N N 303 TYR HB3 H N N 304 TYR HD1 H N N 305 TYR HD2 H N N 306 TYR HE1 H N N 307 TYR HE2 H N N 308 TYR HH H N N 309 TYR HXT H N N 310 VAL N N N N 311 VAL CA C N S 312 VAL C C N N 313 VAL O O N N 314 VAL CB C N N 315 VAL CG1 C N N 316 VAL CG2 C N N 317 VAL OXT O N N 318 VAL H H N N 319 VAL H2 H N N 320 VAL HA H N N 321 VAL HB H N N 322 VAL HG11 H N N 323 VAL HG12 H N N 324 VAL HG13 H N N 325 VAL HG21 H N N 326 VAL HG22 H N N 327 VAL HG23 H N N 328 VAL HXT H N N 329 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 ILE N CA sing N N 116 ILE N H sing N N 117 ILE N H2 sing N N 118 ILE CA C sing N N 119 ILE CA CB sing N N 120 ILE CA HA sing N N 121 ILE C O doub N N 122 ILE C OXT sing N N 123 ILE CB CG1 sing N N 124 ILE CB CG2 sing N N 125 ILE CB HB sing N N 126 ILE CG1 CD1 sing N N 127 ILE CG1 HG12 sing N N 128 ILE CG1 HG13 sing N N 129 ILE CG2 HG21 sing N N 130 ILE CG2 HG22 sing N N 131 ILE CG2 HG23 sing N N 132 ILE CD1 HD11 sing N N 133 ILE CD1 HD12 sing N N 134 ILE CD1 HD13 sing N N 135 ILE OXT HXT sing N N 136 LEU N CA sing N N 137 LEU N H sing N N 138 LEU N H2 sing N N 139 LEU CA C sing N N 140 LEU CA CB sing N N 141 LEU CA HA sing N N 142 LEU C O doub N N 143 LEU C OXT sing N N 144 LEU CB CG sing N N 145 LEU CB HB2 sing N N 146 LEU CB HB3 sing N N 147 LEU CG CD1 sing N N 148 LEU CG CD2 sing N N 149 LEU CG HG sing N N 150 LEU CD1 HD11 sing N N 151 LEU CD1 HD12 sing N N 152 LEU CD1 HD13 sing N N 153 LEU CD2 HD21 sing N N 154 LEU CD2 HD22 sing N N 155 LEU CD2 HD23 sing N N 156 LEU OXT HXT sing N N 157 LYS N CA sing N N 158 LYS N H sing N N 159 LYS N H2 sing N N 160 LYS CA C sing N N 161 LYS CA CB sing N N 162 LYS CA HA sing N N 163 LYS C O doub N N 164 LYS C OXT sing N N 165 LYS CB CG sing N N 166 LYS CB HB2 sing N N 167 LYS CB HB3 sing N N 168 LYS CG CD sing N N 169 LYS CG HG2 sing N N 170 LYS CG HG3 sing N N 171 LYS CD CE sing N N 172 LYS CD HD2 sing N N 173 LYS CD HD3 sing N N 174 LYS CE NZ sing N N 175 LYS CE HE2 sing N N 176 LYS CE HE3 sing N N 177 LYS NZ HZ1 sing N N 178 LYS NZ HZ2 sing N N 179 LYS NZ HZ3 sing N N 180 LYS OXT HXT sing N N 181 MET N CA sing N N 182 MET N H sing N N 183 MET N H2 sing N N 184 MET CA C sing N N 185 MET CA CB sing N N 186 MET CA HA sing N N 187 MET C O doub N N 188 MET C OXT sing N N 189 MET CB CG sing N N 190 MET CB HB2 sing N N 191 MET CB HB3 sing N N 192 MET CG SD sing N N 193 MET CG HG2 sing N N 194 MET CG HG3 sing N N 195 MET SD CE sing N N 196 MET CE HE1 sing N N 197 MET CE HE2 sing N N 198 MET CE HE3 sing N N 199 MET OXT HXT sing N N 200 PRO N CA sing N N 201 PRO N CD sing N N 202 PRO N H sing N N 203 PRO CA C sing N N 204 PRO CA CB sing N N 205 PRO CA HA sing N N 206 PRO C O doub N N 207 PRO C OXT sing N N 208 PRO CB CG sing N N 209 PRO CB HB2 sing N N 210 PRO CB HB3 sing N N 211 PRO CG CD sing N N 212 PRO CG HG2 sing N N 213 PRO CG HG3 sing N N 214 PRO CD HD2 sing N N 215 PRO CD HD3 sing N N 216 PRO OXT HXT sing N N 217 SER N CA sing N N 218 SER N H sing N N 219 SER N H2 sing N N 220 SER CA C sing N N 221 SER CA CB sing N N 222 SER CA HA sing N N 223 SER C O doub N N 224 SER C OXT sing N N 225 SER CB OG sing N N 226 SER CB HB2 sing N N 227 SER CB HB3 sing N N 228 SER OG HG sing N N 229 SER OXT HXT sing N N 230 THR N CA sing N N 231 THR N H sing N N 232 THR N H2 sing N N 233 THR CA C sing N N 234 THR CA CB sing N N 235 THR CA HA sing N N 236 THR C O doub N N 237 THR C OXT sing N N 238 THR CB OG1 sing N N 239 THR CB CG2 sing N N 240 THR CB HB sing N N 241 THR OG1 HG1 sing N N 242 THR CG2 HG21 sing N N 243 THR CG2 HG22 sing N N 244 THR CG2 HG23 sing N N 245 THR OXT HXT sing N N 246 TRP N CA sing N N 247 TRP N H sing N N 248 TRP N H2 sing N N 249 TRP CA C sing N N 250 TRP CA CB sing N N 251 TRP CA HA sing N N 252 TRP C O doub N N 253 TRP C OXT sing N N 254 TRP CB CG sing N N 255 TRP CB HB2 sing N N 256 TRP CB HB3 sing N N 257 TRP CG CD1 doub Y N 258 TRP CG CD2 sing Y N 259 TRP CD1 NE1 sing Y N 260 TRP CD1 HD1 sing N N 261 TRP CD2 CE2 doub Y N 262 TRP CD2 CE3 sing Y N 263 TRP NE1 CE2 sing Y N 264 TRP NE1 HE1 sing N N 265 TRP CE2 CZ2 sing Y N 266 TRP CE3 CZ3 doub Y N 267 TRP CE3 HE3 sing N N 268 TRP CZ2 CH2 doub Y N 269 TRP CZ2 HZ2 sing N N 270 TRP CZ3 CH2 sing Y N 271 TRP CZ3 HZ3 sing N N 272 TRP CH2 HH2 sing N N 273 TRP OXT HXT sing N N 274 TYR N CA sing N N 275 TYR N H sing N N 276 TYR N H2 sing N N 277 TYR CA C sing N N 278 TYR CA CB sing N N 279 TYR CA HA sing N N 280 TYR C O doub N N 281 TYR C OXT sing N N 282 TYR CB CG sing N N 283 TYR CB HB2 sing N N 284 TYR CB HB3 sing N N 285 TYR CG CD1 doub Y N 286 TYR CG CD2 sing Y N 287 TYR CD1 CE1 sing Y N 288 TYR CD1 HD1 sing N N 289 TYR CD2 CE2 doub Y N 290 TYR CD2 HD2 sing N N 291 TYR CE1 CZ doub Y N 292 TYR CE1 HE1 sing N N 293 TYR CE2 CZ sing Y N 294 TYR CE2 HE2 sing N N 295 TYR CZ OH sing N N 296 TYR OH HH sing N N 297 TYR OXT HXT sing N N 298 VAL N CA sing N N 299 VAL N H sing N N 300 VAL N H2 sing N N 301 VAL CA C sing N N 302 VAL CA CB sing N N 303 VAL CA HA sing N N 304 VAL C O doub N N 305 VAL C OXT sing N N 306 VAL CB CG1 sing N N 307 VAL CB CG2 sing N N 308 VAL CB HB sing N N 309 VAL CG1 HG11 sing N N 310 VAL CG1 HG12 sing N N 311 VAL CG1 HG13 sing N N 312 VAL CG2 HG21 sing N N 313 VAL CG2 HG22 sing N N 314 VAL CG2 HG23 sing N N 315 VAL OXT HXT sing N N 316 # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING ONLY' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units ? _em_entity_assembly_molwt.value ? # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 1166 _em_entity_assembly_naturalsource.organism 'Dolichospermum flos-aquae' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 1 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # _em_imaging_optics.chr_aberration_corrector ? _em_imaging_optics.energyfilter_lower ? _em_imaging_optics.energyfilter_slit_width 20 _em_imaging_optics.energyfilter_name ? _em_imaging_optics.energyfilter_upper ? _em_imaging_optics.id 1 _em_imaging_optics.imaging_id 1 _em_imaging_optics.phase_plate ? _em_imaging_optics.sph_aberration_corrector ? _em_imaging_optics.details ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'IMAGE ACQUISITION' ? 1 ? ? 1 SerialEM ? MASKING ? 2 ? ? ? ? ? 'CTF CORRECTION' ? 3 1 ? ? ? ? 'LAYERLINE INDEXING' ? 4 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 5 ? ? ? ? ? 'MODEL FITTING' ? 6 ? 1 ? 'UCSF ChimeraX' ? OTHER ? 7 ? ? ? ? ? 'SERIES ALIGNMENT' ? 8 1 ? ? Warp ? RECONSTRUCTION ? 9 1 ? ? RELION ? 'MODEL REFINEMENT' ? 10 ? 1 ? ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)' 'United States' AI127401 1 'National Institutes of Health/National Institute of Biomedical Imaging and Bioengineering (NIH/NIBIB)' 'United States' EB018975 2 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 7R1C # _atom_sites.entry_id 8GBS _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O # loop_ #