HEADER IMMUNE SYSTEM 28-FEB-23 8GBW TITLE CRYSTAL STRUCTURE OF PC39-23D, AN ANTI-HIV BROADLY NEUTRALIZING TITLE 2 ANTIBODY COMPND MOL_ID: 1; COMPND 2 MOLECULE: PC39-23D FAB HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: THE N-TERMINAL PYROGLUTAMIC ACID RESIDUE IS A POST- COMPND 6 TRANSLATIONALLY MODIFIED GLN; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PC39-23D FAB LIGHT CHAIN; COMPND 9 CHAIN: L; COMPND 10 ENGINEERED: YES; COMPND 11 OTHER_DETAILS: THE N-TERMINAL RESIDUES "VH" ORIGINATE FROM THE SIGNAL COMPND 12 PEPTIDE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS ANTIBODY, BROADLY NEUTRALIZING, HIV-1, V3 GLYCAN, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR S.MURRELL,O.OMORODION,I.A.WILSON REVDAT 3 16-AUG-23 8GBW 1 REMARK REVDAT 2 12-JUL-23 8GBW 1 JRNL REVDAT 1 07-JUN-23 8GBW 0 JRNL AUTH C.JOYCE,S.MURRELL,B.MURRELL,O.OMORODION,L.S.VER,N.CARRICO, JRNL AUTH 2 R.BASTIDAS,R.NEDELLEC,M.BICK,J.WOEHL,F.ZHAO,A.BURNS, JRNL AUTH 3 S.BARMAN,M.APPEL,A.RAMOS,L.WICKRAMASINGHE,K.EREN, JRNL AUTH 4 T.VOLLBRECHT,D.M.SMITH,S.L.KOSAKOVSKY POND,R.MCBRIDE, JRNL AUTH 5 C.WORTH,F.BATISTA,D.SOK,P.POIGNARD,B.BRINEY,I.A.WILSON, JRNL AUTH 6 E.LANDAIS,D.R.BURTON JRNL TITL ANTIGEN PRESSURE FROM TWO FOUNDER VIRUSES INDUCES MULTIPLE JRNL TITL 2 INSERTIONS AT A SINGLE ANTIBODY POSITION TO GENERATE BROADLY JRNL TITL 3 NEUTRALIZING HIV ANTIBODIES. JRNL REF PLOS PATHOG. V. 19 11416 2023 JRNL REFN ESSN 1553-7374 JRNL PMID 37384622 JRNL DOI 10.1371/JOURNAL.PPAT.1011416 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.53 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 98324 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 4911 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.5300 - 4.6600 1.00 3369 192 0.1611 0.1770 REMARK 3 2 4.6600 - 3.7000 0.99 3198 165 0.1494 0.1596 REMARK 3 3 3.7000 - 3.2300 1.00 3186 175 0.1726 0.2275 REMARK 3 4 3.2300 - 2.9400 1.00 3206 149 0.1886 0.2046 REMARK 3 5 2.9400 - 2.7300 0.99 3133 160 0.2009 0.1836 REMARK 3 6 2.7300 - 2.5700 1.00 3134 167 0.1983 0.2193 REMARK 3 7 2.5700 - 2.4400 1.00 3150 174 0.1901 0.2210 REMARK 3 8 2.4400 - 2.3300 1.00 3117 178 0.1914 0.2310 REMARK 3 9 2.3300 - 2.2400 1.00 3130 167 0.1943 0.1990 REMARK 3 10 2.2400 - 2.1600 1.00 3113 172 0.1841 0.2195 REMARK 3 11 2.1600 - 2.1000 1.00 3074 161 0.1812 0.1967 REMARK 3 12 2.1000 - 2.0400 1.00 3168 163 0.1783 0.1895 REMARK 3 13 2.0400 - 1.9800 1.00 3108 175 0.1803 0.1852 REMARK 3 14 1.9800 - 1.9300 0.99 3034 168 0.1749 0.2080 REMARK 3 15 1.9300 - 1.8900 0.99 3097 163 0.1769 0.2161 REMARK 3 16 1.8900 - 1.8500 0.99 3085 154 0.1781 0.1856 REMARK 3 17 1.8500 - 1.8100 1.00 3106 172 0.1900 0.2157 REMARK 3 18 1.8100 - 1.7800 1.00 3108 151 0.1966 0.2037 REMARK 3 19 1.7800 - 1.7500 1.00 3080 185 0.1962 0.2250 REMARK 3 20 1.7500 - 1.7200 1.00 3099 168 0.1916 0.2023 REMARK 3 21 1.7200 - 1.6900 1.00 3128 147 0.1839 0.2045 REMARK 3 22 1.6900 - 1.6600 1.00 3065 163 0.1843 0.1868 REMARK 3 23 1.6600 - 1.6400 1.00 3107 155 0.1859 0.1764 REMARK 3 24 1.6400 - 1.6200 1.00 3096 163 0.1858 0.1893 REMARK 3 25 1.6200 - 1.5900 1.00 3103 162 0.1877 0.2061 REMARK 3 26 1.5900 - 1.5700 0.99 3052 149 0.2007 0.2564 REMARK 3 27 1.5700 - 1.5500 0.98 3048 139 0.2099 0.2300 REMARK 3 28 1.5500 - 1.5400 0.99 3072 163 0.2187 0.2561 REMARK 3 29 1.5400 - 1.5200 0.99 3064 159 0.2229 0.2246 REMARK 3 30 1.5200 - 1.5000 0.96 2983 152 0.2299 0.2707 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.137 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.223 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.62 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 4156 REMARK 3 ANGLE : 1.330 5703 REMARK 3 CHIRALITY : 0.086 630 REMARK 3 PLANARITY : 0.014 753 REMARK 3 DIHEDRAL : 16.880 1528 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 2 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.3101 15.0136 -19.2343 REMARK 3 T TENSOR REMARK 3 T11: 0.0857 T22: 0.1004 REMARK 3 T33: 0.1094 T12: 0.0033 REMARK 3 T13: -0.0166 T23: -0.0290 REMARK 3 L TENSOR REMARK 3 L11: 1.7694 L22: 5.4754 REMARK 3 L33: 7.5789 L12: -0.8615 REMARK 3 L13: 2.0146 L23: -5.2594 REMARK 3 S TENSOR REMARK 3 S11: 0.1109 S12: 0.0131 S13: -0.1970 REMARK 3 S21: -0.3730 S22: 0.2268 S23: 0.4203 REMARK 3 S31: 0.3937 S32: -0.3927 S33: -0.3468 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 18 THROUGH 66 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.4856 16.5126 -7.6339 REMARK 3 T TENSOR REMARK 3 T11: 0.0686 T22: 0.0659 REMARK 3 T33: 0.0837 T12: 0.0099 REMARK 3 T13: -0.0002 T23: -0.0129 REMARK 3 L TENSOR REMARK 3 L11: 0.9523 L22: 0.7387 REMARK 3 L33: 1.9981 L12: -0.1486 REMARK 3 L13: 0.7129 L23: -0.6862 REMARK 3 S TENSOR REMARK 3 S11: 0.0266 S12: -0.0058 S13: -0.0514 REMARK 3 S21: 0.0057 S22: -0.0012 S23: 0.0406 REMARK 3 S31: 0.0313 S32: -0.0497 S33: -0.0256 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 67 THROUGH 87 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.1019 19.1361 -11.4876 REMARK 3 T TENSOR REMARK 3 T11: 0.0460 T22: 0.0902 REMARK 3 T33: 0.1131 T12: 0.0060 REMARK 3 T13: -0.0079 T23: -0.0112 REMARK 3 L TENSOR REMARK 3 L11: 0.5101 L22: 2.5872 REMARK 3 L33: 7.8401 L12: 0.3440 REMARK 3 L13: -0.8619 L23: -2.7572 REMARK 3 S TENSOR REMARK 3 S11: 0.1027 S12: 0.0406 S13: 0.0768 REMARK 3 S21: 0.0618 S22: 0.0821 S23: 0.1786 REMARK 3 S31: -0.0854 S32: -0.3778 S33: -0.1764 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 88 THROUGH 119 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.7988 9.9191 -11.1249 REMARK 3 T TENSOR REMARK 3 T11: 0.1027 T22: 0.0620 REMARK 3 T33: 0.1055 T12: -0.0003 REMARK 3 T13: -0.0098 T23: -0.0126 REMARK 3 L TENSOR REMARK 3 L11: 1.6119 L22: 0.2341 REMARK 3 L33: 5.5636 L12: -0.3830 REMARK 3 L13: 2.4897 L23: -0.5568 REMARK 3 S TENSOR REMARK 3 S11: 0.1497 S12: -0.0395 S13: -0.0953 REMARK 3 S21: -0.0550 S22: -0.0607 S23: 0.0700 REMARK 3 S31: 0.2930 S32: -0.1021 S33: -0.0913 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 120 THROUGH 190 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.9549 3.9634 -46.7065 REMARK 3 T TENSOR REMARK 3 T11: 0.0862 T22: 0.0896 REMARK 3 T33: 0.1123 T12: -0.0156 REMARK 3 T13: -0.0100 T23: -0.0235 REMARK 3 L TENSOR REMARK 3 L11: 1.2396 L22: 1.3932 REMARK 3 L33: 2.9537 L12: -0.6884 REMARK 3 L13: -0.8331 L23: 1.2452 REMARK 3 S TENSOR REMARK 3 S11: -0.0067 S12: -0.0738 S13: 0.1726 REMARK 3 S21: -0.0551 S22: 0.0780 S23: -0.0842 REMARK 3 S31: -0.1131 S32: 0.0026 S33: -0.0671 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 191 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.5361 -1.6647 -45.9025 REMARK 3 T TENSOR REMARK 3 T11: 0.0921 T22: 0.1293 REMARK 3 T33: 0.1219 T12: -0.0359 REMARK 3 T13: 0.0046 T23: -0.0388 REMARK 3 L TENSOR REMARK 3 L11: 6.2467 L22: 6.1037 REMARK 3 L33: 8.9326 L12: -5.9120 REMARK 3 L13: -7.1730 L23: 7.0062 REMARK 3 S TENSOR REMARK 3 S11: -0.1497 S12: -0.0528 S13: -0.0496 REMARK 3 S21: 0.0840 S22: -0.0496 S23: 0.1664 REMARK 3 S31: 0.1511 S32: -0.1170 S33: 0.1817 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 204 THROUGH 215 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.6774 1.4590 -51.7238 REMARK 3 T TENSOR REMARK 3 T11: 0.1279 T22: 0.4002 REMARK 3 T33: 0.1635 T12: -0.0437 REMARK 3 T13: -0.0554 T23: -0.0543 REMARK 3 L TENSOR REMARK 3 L11: 2.1558 L22: 2.7954 REMARK 3 L33: 8.4449 L12: -1.5404 REMARK 3 L13: -7.9541 L23: 2.2398 REMARK 3 S TENSOR REMARK 3 S11: -0.3840 S12: 0.6369 S13: 0.0935 REMARK 3 S21: -0.2504 S22: -0.1077 S23: 0.2867 REMARK 3 S31: 0.0971 S32: -1.0622 S33: 0.3957 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'L' AND (RESID -1 THROUGH 29 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.9038 13.8571 -18.3788 REMARK 3 T TENSOR REMARK 3 T11: 0.0818 T22: 0.1819 REMARK 3 T33: 0.0925 T12: 0.0326 REMARK 3 T13: -0.0018 T23: -0.0357 REMARK 3 L TENSOR REMARK 3 L11: 1.2654 L22: 3.3215 REMARK 3 L33: 3.7592 L12: -0.1032 REMARK 3 L13: -0.3109 L23: 2.5572 REMARK 3 S TENSOR REMARK 3 S11: 0.0839 S12: 0.3366 S13: -0.0381 REMARK 3 S21: -0.2070 S22: 0.0177 S23: -0.0713 REMARK 3 S31: -0.1329 S32: 0.3444 S33: -0.1104 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 30 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.1032 5.5120 -16.1942 REMARK 3 T TENSOR REMARK 3 T11: 0.1049 T22: 0.1155 REMARK 3 T33: 0.1285 T12: 0.0385 REMARK 3 T13: -0.0262 T23: -0.0432 REMARK 3 L TENSOR REMARK 3 L11: 0.4817 L22: 0.3084 REMARK 3 L33: 1.8841 L12: 0.0229 REMARK 3 L13: -0.2611 L23: 0.4359 REMARK 3 S TENSOR REMARK 3 S11: 0.0231 S12: 0.1044 S13: -0.1597 REMARK 3 S21: 0.0404 S22: 0.0372 S23: -0.0698 REMARK 3 S31: 0.2602 S32: 0.1581 S33: -0.0488 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 114 THROUGH 150 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.1708 11.7052 -49.4800 REMARK 3 T TENSOR REMARK 3 T11: 0.1463 T22: 0.1144 REMARK 3 T33: 0.1609 T12: -0.0224 REMARK 3 T13: -0.0037 T23: 0.0185 REMARK 3 L TENSOR REMARK 3 L11: 2.3026 L22: 2.7239 REMARK 3 L33: 3.0030 L12: -1.2505 REMARK 3 L13: 0.6359 L23: -0.7925 REMARK 3 S TENSOR REMARK 3 S11: -0.1562 S12: 0.2828 S13: 0.4103 REMARK 3 S21: 0.0333 S22: 0.0361 S23: -0.1287 REMARK 3 S31: -0.4079 S32: 0.0680 S33: 0.1044 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 151 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.8636 14.2046 -49.5563 REMARK 3 T TENSOR REMARK 3 T11: 0.2067 T22: 0.1590 REMARK 3 T33: 0.2985 T12: -0.0562 REMARK 3 T13: -0.0238 T23: 0.0575 REMARK 3 L TENSOR REMARK 3 L11: 1.9877 L22: 1.2619 REMARK 3 L33: 1.7782 L12: -0.9029 REMARK 3 L13: 0.7423 L23: -0.2831 REMARK 3 S TENSOR REMARK 3 S11: -0.1130 S12: 0.3009 S13: 0.5902 REMARK 3 S21: 0.0074 S22: -0.0956 S23: -0.2613 REMARK 3 S31: -0.4698 S32: 0.2390 S33: 0.1670 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8GBW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-MAR-23. REMARK 100 THE DEPOSITION ID IS D_1000272561. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97950 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 98412 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 12.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11000 REMARK 200 FOR THE DATA SET : 22.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 9.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 1.00000 REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, 10% PEG 8000, PH 7.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.14200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.88350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.68350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.88350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.14200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.68350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 CYS H 216 REMARK 465 ASP H 217 REMARK 465 CYS L 214 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS H 22 CA - CB - SG ANGL. DEV. = 6.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER H 15 -10.43 84.62 REMARK 500 LYS H 64 -132.15 52.26 REMARK 500 ASP H 144 59.56 70.94 REMARK 500 PRO L 40 129.24 -38.66 REMARK 500 ASP L 50 73.48 52.61 REMARK 500 ASN L 138 61.70 64.24 REMARK 500 ASN L 138 74.12 51.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG H 97 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH H 648 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH H 649 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH H 650 DISTANCE = 6.53 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8GBV RELATED DB: PDB REMARK 900 RELATED ID: 8GBX RELATED DB: PDB REMARK 900 RELATED ID: 8GBY RELATED DB: PDB REMARK 900 RELATED ID: 8GBZ RELATED DB: PDB REMARK 900 RELATED ID: 8GC0 RELATED DB: PDB REMARK 900 RELATED ID: 8GC1 RELATED DB: PDB DBREF 8GBW H 1 217 PDB 8GBW 8GBW 1 217 DBREF 8GBW L -1 214 PDB 8GBW 8GBW -1 214 SEQRES 1 H 243 PCA VAL GLN LEU LYS GLN TRP GLY ALA GLY LEU VAL LYS SEQRES 2 H 243 PRO SER GLU THR LEU SER LEU THR CYS THR VAL HIS GLY SEQRES 3 H 243 ASP THR LEU SER ASP TYR SER TRP ASN TRP GLY VAL SER SEQRES 4 H 243 ARG SER ASP TYR TYR TRP SER TRP ILE ARG GLN PRO PRO SEQRES 5 H 243 GLY LYS GLY LEU GLU TRP ILE GLY GLU ILE ASN ARG SER SEQRES 6 H 243 GLY SER THR GLN TYR HIS PRO SER LEU LYS SER ARG VAL SEQRES 7 H 243 LYS ILE VAL ILE GLU VAL SER LYS ASN GLN PHE SER LEU SEQRES 8 H 243 GLU LEU SER SER VAL THR ALA ALA ASP THR ALA VAL TYR SEQRES 9 H 243 TYR CYS ALA ARG GLY ARG ARG SER ARG GLN TRP ILE GLY SEQRES 10 H 243 ASP LEU PRO PRO GLY ASN HIS GLY LEU ASP VAL TRP GLY SEQRES 11 H 243 GLN GLY ILE PRO VAL SER VAL SER SER ALA SER THR LYS SEQRES 12 H 243 GLY PRO SER VAL PHE PRO LEU ALA PRO SER SER LYS SER SEQRES 13 H 243 THR SER GLY GLY THR ALA ALA LEU GLY CYS LEU VAL LYS SEQRES 14 H 243 ASP TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER SEQRES 15 H 243 GLY ALA LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL SEQRES 16 H 243 LEU GLN SER SER GLY LEU TYR SER LEU SER SER VAL VAL SEQRES 17 H 243 THR VAL PRO SER SER SER LEU GLY THR GLN THR TYR ILE SEQRES 18 H 243 CYS ASN VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP SEQRES 19 H 243 LYS ARG VAL GLU PRO LYS SER CYS ASP SEQRES 1 L 218 VAL HIS GLU ILE VAL LEU THR GLN SER PRO GLY THR LEU SEQRES 2 L 218 SER LEU SER PRO GLY GLU ARG ALA THR LEU SER CYS ARG SEQRES 3 L 218 ALA SER GLN SER VAL SER SER SER TYR LEU ALA TRP TYR SEQRES 4 L 218 GLN HIS LYS PRO GLY GLN ALA PRO ARG LEU LEU ILE SER SEQRES 5 L 218 ASP VAL TYR ARG ARG ALA THR GLY VAL PRO ASP ARG PHE SEQRES 6 L 218 SER ALA SER GLY SER GLY THR ASP PHE THR LEU THR ILE SEQRES 7 L 218 SER ARG LEU GLU PRO GLU ASP PHE ALA VAL TYR TYR CYS SEQRES 8 L 218 GLN GLN TYR GLY ILE SER SER PRO PHE ASN PHE GLY GLN SEQRES 9 L 218 GLY THR LYS VAL ASP ILE LYS ARG THR VAL ALA ALA PRO SEQRES 10 L 218 SER VAL PHE ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SEQRES 11 L 218 SER GLY THR ALA SER VAL VAL CYS LEU LEU ASN ASN PHE SEQRES 12 L 218 TYR PRO ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN SEQRES 13 L 218 ALA LEU GLN SER GLY ASN SER GLN GLU SER VAL THR GLU SEQRES 14 L 218 GLN ASP SER LYS ASP SER THR TYR SER LEU SER SER THR SEQRES 15 L 218 LEU THR LEU SER LYS ALA ASP TYR GLU LYS HIS LYS VAL SEQRES 16 L 218 TYR ALA CYS GLU VAL THR HIS GLN GLY LEU SER SER PRO SEQRES 17 L 218 VAL THR LYS SER PHE ASN ARG GLY GLU CYS HET PCA H 1 8 HET EDO H 301 4 HET EDO H 302 4 HET EDO H 303 4 HET EDO H 304 4 HET EDO H 305 4 HET EDO H 306 4 HET PEG H 307 7 HET PEG H 308 7 HET PEG H 309 7 HET EDO L 301 4 HET EDO L 302 4 HET EDO L 303 4 HET EDO L 304 4 HET EDO L 305 4 HETNAM PCA PYROGLUTAMIC ACID HETNAM EDO 1,2-ETHANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN EDO ETHYLENE GLYCOL FORMUL 1 PCA C5 H7 N O3 FORMUL 3 EDO 11(C2 H6 O2) FORMUL 9 PEG 3(C4 H10 O3) FORMUL 17 HOH *430(H2 O) HELIX 1 AA1 SER H 31H SER H 31J 5 3 HELIX 2 AA2 VAL H 73 LYS H 75 5 3 HELIX 3 AA3 THR H 83 THR H 87 5 5 HELIX 4 AA4 SER H 127 SER H 132 1 6 HELIX 5 AA5 SER H 156 ALA H 158 5 3 HELIX 6 AA6 SER H 187 GLY H 190 5 4 HELIX 7 AA7 LYS H 201 ASN H 204 5 4 HELIX 8 AA8 SER L 29 SER L 31 5 3 HELIX 9 AA9 GLU L 79 PHE L 83 5 5 HELIX 10 AB1 SER L 121 LYS L 126 1 6 HELIX 11 AB2 LYS L 183 LYS L 188 1 6 SHEET 1 AA1 4 GLN H 3 GLY H 8 0 SHEET 2 AA1 4 LEU H 18 HIS H 25 -1 O HIS H 25 N GLN H 3 SHEET 3 AA1 4 GLN H 77 LEU H 82 -1 O LEU H 82 N LEU H 18 SHEET 4 AA1 4 VAL H 67 GLU H 72 -1 N GLU H 72 O GLN H 77 SHEET 1 AA2 6 LEU H 11 VAL H 12 0 SHEET 2 AA2 6 ILE H 107 VAL H 111 1 O SER H 110 N VAL H 12 SHEET 3 AA2 6 ALA H 88 ARG H 96 -1 N ALA H 88 O VAL H 109 SHEET 4 AA2 6 TYR H 32 GLN H 39 -1 N ILE H 37 O TYR H 91 SHEET 5 AA2 6 GLU H 46 ILE H 51 -1 O ILE H 48 N TRP H 36 SHEET 6 AA2 6 THR H 57 TYR H 59 -1 O GLN H 58 N GLU H 50 SHEET 1 AA3 4 LEU H 11 VAL H 12 0 SHEET 2 AA3 4 ILE H 107 VAL H 111 1 O SER H 110 N VAL H 12 SHEET 3 AA3 4 ALA H 88 ARG H 96 -1 N ALA H 88 O VAL H 109 SHEET 4 AA3 4 GLY H 100K TRP H 103 -1 O VAL H 102 N ARG H 94 SHEET 1 AA4 4 SER H 120 LEU H 124 0 SHEET 2 AA4 4 THR H 135 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 AA4 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 AA4 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AA5 4 SER H 120 LEU H 124 0 SHEET 2 AA5 4 THR H 135 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 AA5 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 AA5 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AA6 3 THR H 151 TRP H 154 0 SHEET 2 AA6 3 ILE H 195 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 AA6 3 THR H 205 ARG H 210 -1 O VAL H 207 N VAL H 198 SHEET 1 AA7 4 LEU L 4 SER L 7 0 SHEET 2 AA7 4 ALA L 19 ALA L 25 -1 O ARG L 24 N THR L 5 SHEET 3 AA7 4 ASP L 70 ILE L 75 -1 O LEU L 73 N LEU L 21 SHEET 4 AA7 4 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 AA8 6 THR L 10 LEU L 13 0 SHEET 2 AA8 6 THR L 102 ILE L 106 1 O LYS L 103 N LEU L 11 SHEET 3 AA8 6 VAL L 85 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AA8 6 LEU L 33 HIS L 38 -1 N HIS L 38 O VAL L 85 SHEET 5 AA8 6 ARG L 45 SER L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 AA8 6 ARG L 53 ARG L 54 -1 O ARG L 53 N SER L 49 SHEET 1 AA9 4 SER L 114 PHE L 118 0 SHEET 2 AA9 4 THR L 129 PHE L 139 -1 O ASN L 137 N SER L 114 SHEET 3 AA9 4 TYR L 173 SER L 182 -1 O LEU L 179 N VAL L 132 SHEET 4 AA9 4 SER L 159 VAL L 163 -1 N GLN L 160 O THR L 178 SHEET 1 AB1 4 ALA L 153 LEU L 154 0 SHEET 2 AB1 4 LYS L 145 VAL L 150 -1 N VAL L 150 O ALA L 153 SHEET 3 AB1 4 VAL L 191 THR L 197 -1 O GLU L 195 N GLN L 147 SHEET 4 AB1 4 VAL L 205 ASN L 210 -1 O PHE L 209 N TYR L 192 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.10 SSBOND 2 CYS H 140 CYS H 196 1555 1555 2.07 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.32 SSBOND 4 CYS L 134 CYS L 194 1555 1555 2.12 LINK C PCA H 1 N VAL H 2 1555 1555 1.32 CISPEP 1 PHE H 146 PRO H 147 0 -13.88 CISPEP 2 GLU H 148 PRO H 149 0 -0.55 CISPEP 3 SER L 7 PRO L 8 0 -9.06 CISPEP 4 SER L 7 PRO L 8 0 -13.30 CISPEP 5 SER L 7 PRO L 8 0 -0.12 CISPEP 6 SER L 95 PRO L 95A 0 8.82 CISPEP 7 TYR L 140 PRO L 141 0 2.40 CRYST1 48.284 83.367 151.767 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020711 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011995 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006589 0.00000 HETATM 1 N PCA H 1 -18.186 -2.959 -3.422 1.00 37.44 N HETATM 2 CA PCA H 1 -17.379 -1.788 -3.771 1.00 27.13 C HETATM 3 CB PCA H 1 -16.345 -2.136 -4.841 1.00 30.99 C HETATM 4 CG PCA H 1 -16.406 -3.644 -5.057 1.00 40.08 C HETATM 5 CD PCA H 1 -17.581 -4.040 -4.206 1.00 47.98 C HETATM 6 OE PCA H 1 -17.981 -5.198 -4.184 1.00 54.54 O HETATM 7 C PCA H 1 -18.268 -0.631 -4.232 1.00 23.74 C HETATM 8 O PCA H 1 -19.361 -0.819 -4.780 1.00 26.73 O