HEADER SIGNALING PROTEIN 01-MAR-23 8GC7
TITLE BRUTON'S TYROSINE KINASE IN COMPLEX WITH 5-(PIPERIDIN-1-YL)-3-{[4-
TITLE 2 (PIPERIDIN-4-YL)PHENYL]AMINO}PYRAZINE-2-CARBOXAMIDE
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: TYROSINE-PROTEIN KINASE BTK;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: AGAMMAGLOBULINEMIA TYROSINE KINASE,ATK,B-CELL PROGENITOR
COMPND 5 KINASE,BPK,BRUTON TYROSINE KINASE;
COMPND 6 EC: 2.7.10.2;
COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: BTK, AGMX1, ATK, BPK;
SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA;
SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM;
SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108
KEYWDS DEGRADER, COMPLEX, SIGNALING PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR S.GAJEWSKI
REVDAT 3 21-FEB-24 8GC7 1 JRNL
REVDAT 2 14-FEB-24 8GC7 1 JRNL
REVDAT 1 31-JAN-24 8GC7 0
JRNL AUTH S.MONTOYA,J.BOURCIER,M.NOVISKI,H.LU,M.C.THOMPSON,A.CHIRINO,
JRNL AUTH 2 J.JAHN,A.K.SONDHI,S.GAJEWSKI,Y.S.M.TAN,S.YUNG,A.URBAN,
JRNL AUTH 3 E.WANG,C.HAN,X.MI,W.J.KIM,Q.SIEVERS,P.AUGER,H.BOUSQUET,
JRNL AUTH 4 N.BRATHABAN,B.BRAVO,M.GESSNER,C.GUIDUCCI,J.N.IULIANO,T.KANE,
JRNL AUTH 5 R.MUKERJI,P.J.REDDY,J.POWERS,M.SANCHEZ GARCIA DE LOS RIOS,
JRNL AUTH 6 J.YE,C.BARRIENTOS RISSO,D.TSAI,G.PARDO,R.Q.NOTTI,A.PARDO,
JRNL AUTH 7 M.AFFER,V.NAWARATNE,T.M.TOTIGER,C.PENA-VELASQUEZ,J.M.RHODES,
JRNL AUTH 8 A.D.ZELENETZ,A.ALENCAR,L.E.ROEKER,S.MEHTA,R.GARIPPA,
JRNL AUTH 9 A.LINLEY,R.K.SONI,S.S.SKANLAND,R.J.BROWN,A.R.MATO,
JRNL AUTH10 G.M.HANSEN,O.ABDEL-WAHAB,J.TAYLOR
JRNL TITL KINASE-IMPAIRED BTK MUTATIONS ARE SUSCEPTIBLE TO
JRNL TITL 2 CLINICAL-STAGE BTK AND IKZF1/3 DEGRADER NX-2127.
JRNL REF SCIENCE V. 383 I5798 2024
JRNL REFN ESSN 1095-9203
JRNL PMID 38301010
JRNL DOI 10.1126/SCIENCE.ADI5798
REMARK 2
REMARK 2 RESOLUTION. 1.90 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.20.1_4487
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.61
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330
REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 3 NUMBER OF REFLECTIONS : 24751
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.195
REMARK 3 R VALUE (WORKING SET) : 0.192
REMARK 3 FREE R VALUE : 0.227
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.080
REMARK 3 FREE R VALUE TEST SET COUNT : 2000
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 61.6100 - 4.5800 1.00 1776 156 0.1613 0.1756
REMARK 3 2 4.5800 - 3.6400 1.00 1660 146 0.1342 0.1411
REMARK 3 3 3.6300 - 3.1800 1.00 1633 143 0.1698 0.2041
REMARK 3 4 3.1700 - 2.8800 1.00 1649 145 0.1916 0.2391
REMARK 3 5 2.8800 - 2.6800 1.00 1622 143 0.2074 0.2773
REMARK 3 6 2.6800 - 2.5200 1.00 1627 143 0.2099 0.2508
REMARK 3 7 2.5200 - 2.3900 1.00 1604 141 0.2039 0.2430
REMARK 3 8 2.3900 - 2.2900 1.00 1608 142 0.2046 0.2740
REMARK 3 9 2.2900 - 2.2000 1.00 1601 141 0.2122 0.2466
REMARK 3 10 2.2000 - 2.1300 1.00 1589 139 0.2097 0.2449
REMARK 3 11 2.1300 - 2.0600 1.00 1608 142 0.2226 0.2633
REMARK 3 12 2.0600 - 2.0000 1.00 1586 138 0.2339 0.2722
REMARK 3 13 2.0000 - 1.9500 1.00 1626 143 0.2452 0.2825
REMARK 3 14 1.9500 - 1.9000 1.00 1562 138 0.2610 0.2986
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.10
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.195
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.557
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 12.48
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.92
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.003 2292
REMARK 3 ANGLE : 0.686 3102
REMARK 3 CHIRALITY : 0.044 326
REMARK 3 PLANARITY : 0.006 393
REMARK 3 DIHEDRAL : 6.486 338
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 7
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 389 THROUGH 407 )
REMARK 3 ORIGIN FOR THE GROUP (A): 3.4501 0.4081 -0.5878
REMARK 3 T TENSOR
REMARK 3 T11: 0.1520 T22: 0.1206
REMARK 3 T33: 0.1343 T12: 0.0365
REMARK 3 T13: 0.0114 T23: -0.0497
REMARK 3 L TENSOR
REMARK 3 L11: 3.4035 L22: 0.8377
REMARK 3 L33: 2.2886 L12: -0.2182
REMARK 3 L13: -0.2820 L23: 1.0470
REMARK 3 S TENSOR
REMARK 3 S11: -0.2140 S12: -0.2183 S13: 0.2098
REMARK 3 S21: -0.1807 S22: 0.1175 S23: -0.0989
REMARK 3 S31: -0.2412 S32: -0.0313 S33: 0.0754
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 408 THROUGH 470 )
REMARK 3 ORIGIN FOR THE GROUP (A): 0.5315 -4.5749 -7.7191
REMARK 3 T TENSOR
REMARK 3 T11: 0.0756 T22: 0.0894
REMARK 3 T33: 0.0340 T12: 0.0071
REMARK 3 T13: 0.0050 T23: -0.0153
REMARK 3 L TENSOR
REMARK 3 L11: 0.9743 L22: 1.4128
REMARK 3 L33: 0.3872 L12: -0.1168
REMARK 3 L13: 0.4196 L23: -0.2362
REMARK 3 S TENSOR
REMARK 3 S11: 0.0145 S12: -0.1126 S13: 0.0624
REMARK 3 S21: 0.0632 S22: -0.0091 S23: 0.0430
REMARK 3 S31: 0.0109 S32: -0.0017 S33: -0.0041
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 471 THROUGH 514 )
REMARK 3 ORIGIN FOR THE GROUP (A): 13.2214 -17.3854 -13.9724
REMARK 3 T TENSOR
REMARK 3 T11: 0.0517 T22: 0.0766
REMARK 3 T33: 0.0413 T12: -0.0025
REMARK 3 T13: -0.0219 T23: 0.0006
REMARK 3 L TENSOR
REMARK 3 L11: 1.3908 L22: 0.3935
REMARK 3 L33: 0.3990 L12: -0.1535
REMARK 3 L13: -0.3216 L23: 0.2249
REMARK 3 S TENSOR
REMARK 3 S11: -0.0197 S12: 0.0114 S13: -0.0354
REMARK 3 S21: -0.0409 S22: 0.0421 S23: -0.0871
REMARK 3 S31: 0.0199 S32: 0.0445 S33: -0.0317
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 515 THROUGH 552 )
REMARK 3 ORIGIN FOR THE GROUP (A): 1.2464 -14.1159 -15.9274
REMARK 3 T TENSOR
REMARK 3 T11: 0.0564 T22: 0.0812
REMARK 3 T33: 0.0361 T12: 0.0007
REMARK 3 T13: 0.0004 T23: 0.0067
REMARK 3 L TENSOR
REMARK 3 L11: 1.4942 L22: 1.0486
REMARK 3 L33: 0.1674 L12: 0.0608
REMARK 3 L13: -0.1649 L23: 0.3038
REMARK 3 S TENSOR
REMARK 3 S11: 0.0396 S12: -0.1697 S13: -0.0286
REMARK 3 S21: 0.0234 S22: 0.0141 S23: 0.0652
REMARK 3 S31: -0.0087 S32: -0.0471 S33: -0.0385
REMARK 3 TLS GROUP : 5
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 553 THROUGH 575 )
REMARK 3 ORIGIN FOR THE GROUP (A): -5.0951 -20.2502 -28.2886
REMARK 3 T TENSOR
REMARK 3 T11: 0.0539 T22: 0.0807
REMARK 3 T33: 0.0544 T12: 0.0092
REMARK 3 T13: -0.0180 T23: -0.0070
REMARK 3 L TENSOR
REMARK 3 L11: 2.9477 L22: 2.6574
REMARK 3 L33: 1.6374 L12: 1.2174
REMARK 3 L13: -1.0471 L23: -0.4454
REMARK 3 S TENSOR
REMARK 3 S11: -0.1190 S12: 0.1686 S13: 0.0301
REMARK 3 S21: -0.1130 S22: 0.1025 S23: 0.1419
REMARK 3 S31: -0.0456 S32: -0.2027 S33: -0.0057
REMARK 3 TLS GROUP : 6
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 576 THROUGH 623 )
REMARK 3 ORIGIN FOR THE GROUP (A): 7.2972 -24.2560 -29.6221
REMARK 3 T TENSOR
REMARK 3 T11: 0.0420 T22: 0.0719
REMARK 3 T33: 0.0500 T12: -0.0092
REMARK 3 T13: -0.0122 T23: -0.0029
REMARK 3 L TENSOR
REMARK 3 L11: 1.4193 L22: 1.0952
REMARK 3 L33: 1.0963 L12: 0.0093
REMARK 3 L13: 0.6108 L23: -0.2030
REMARK 3 S TENSOR
REMARK 3 S11: -0.0359 S12: 0.2260 S13: 0.0735
REMARK 3 S21: -0.0529 S22: -0.0090 S23: -0.0148
REMARK 3 S31: -0.0309 S32: 0.0556 S33: 0.0358
REMARK 3 TLS GROUP : 7
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 624 THROUGH 658 )
REMARK 3 ORIGIN FOR THE GROUP (A): 7.9466 -33.9431 -19.1721
REMARK 3 T TENSOR
REMARK 3 T11: 0.0624 T22: 0.0316
REMARK 3 T33: 0.0623 T12: -0.0080
REMARK 3 T13: 0.0071 T23: -0.0109
REMARK 3 L TENSOR
REMARK 3 L11: 1.7472 L22: 1.9028
REMARK 3 L33: 3.4435 L12: -0.2714
REMARK 3 L13: 0.8468 L23: -0.0653
REMARK 3 S TENSOR
REMARK 3 S11: -0.0875 S12: -0.0280 S13: -0.0830
REMARK 3 S21: 0.0600 S22: -0.0038 S23: -0.0558
REMARK 3 S31: 0.0169 S32: 0.0266 S33: 0.0515
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 8GC7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAR-23.
REMARK 100 THE DEPOSITION ID IS D_1000272465.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 04-NOV-22
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 6.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : ALS
REMARK 200 BEAMLINE : 5.0.1
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.977
REMARK 200 MONOCHROMATOR : SI(220)
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS
REMARK 200 DATA SCALING SOFTWARE : AIMLESS
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24811
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900
REMARK 200 RESOLUTION RANGE LOW (A) : 61.610
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 200 DATA REDUNDANCY : 6.300
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 4.8000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95
REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0
REMARK 200 DATA REDUNDANCY IN SHELL : 5.80
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 48.94
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.06 M MAGNESIUM CHLORIDE HEXAHYDRATE,
REMARK 280 0.06 M CALCIUM CHLORIDE DIHYDRATE, 0.1M IMIDAZOLE, 0.1M MES
REMARK 280 MONOHYDRATE, 24% V/V PEG 500 MME, 12 % W/V PEG 20000, PH 6.5,
REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.99650
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.56000
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.01600
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.56000
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.99650
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.01600
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 LYS A 400 CG CD CE NZ
REMARK 470 LYS A 406 CG CD CE NZ
REMARK 470 GLN A 424 CG CD OE1 NE2
REMARK 470 LYS A 447 CD CE NZ
REMARK 470 GLU A 488 OE1 OE2
REMARK 470 GLN A 496 CG CD OE1 NE2
REMARK 470 LYS A 558 CE NZ
REMARK 470 LYS A 595 CD CE NZ
REMARK 470 ARG A 600 CG CD NE CZ NH1 NH2
REMARK 470 LYS A 625 CG CD CE NZ
REMARK 470 LYS A 645 CE NZ
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ARG A 520 -9.04 80.71
REMARK 500 ASP A 521 49.75 -152.11
REMARK 500
REMARK 500 REMARK: NULL
DBREF 8GC7 A 389 658 UNP Q06187 BTK_HUMAN 389 658
SEQRES 1 A 270 GLY LEU GLY TYR GLY SER TRP GLU ILE ASP PRO LYS ASP
SEQRES 2 A 270 LEU THR PHE LEU LYS GLU LEU GLY THR GLY GLN PHE GLY
SEQRES 3 A 270 VAL VAL LYS TYR GLY LYS TRP ARG GLY GLN TYR ASP VAL
SEQRES 4 A 270 ALA ILE LYS MET ILE LYS GLU GLY SER MET SER GLU ASP
SEQRES 5 A 270 GLU PHE ILE GLU GLU ALA LYS VAL MET MET ASN LEU SER
SEQRES 6 A 270 HIS GLU LYS LEU VAL GLN LEU TYR GLY VAL CYS THR LYS
SEQRES 7 A 270 GLN ARG PRO ILE PHE ILE ILE THR GLU TYR MET ALA ASN
SEQRES 8 A 270 GLY CYS LEU LEU ASN TYR LEU ARG GLU MET ARG HIS ARG
SEQRES 9 A 270 PHE GLN THR GLN GLN LEU LEU GLU MET CYS LYS ASP VAL
SEQRES 10 A 270 CYS GLU ALA MET GLU TYR LEU GLU SER LYS GLN PHE LEU
SEQRES 11 A 270 HIS ARG ASP LEU ALA ALA ARG ASN CYS LEU VAL ASN ASP
SEQRES 12 A 270 GLN GLY VAL VAL LYS VAL SER ASP PHE GLY LEU SER ARG
SEQRES 13 A 270 TYR VAL LEU ASP ASP GLU TYR THR SER SER VAL GLY SER
SEQRES 14 A 270 LYS PHE PRO VAL ARG TRP SER PRO PRO GLU VAL LEU MET
SEQRES 15 A 270 TYR SER LYS PHE SER SER LYS SER ASP ILE TRP ALA PHE
SEQRES 16 A 270 GLY VAL LEU MET TRP GLU ILE TYR SER LEU GLY LYS MET
SEQRES 17 A 270 PRO TYR GLU ARG PHE THR ASN SER GLU THR ALA GLU HIS
SEQRES 18 A 270 ILE ALA GLN GLY LEU ARG LEU TYR ARG PRO HIS LEU ALA
SEQRES 19 A 270 SER GLU LYS VAL TYR THR ILE MET TYR SER CYS TRP HIS
SEQRES 20 A 270 GLU LYS ALA ASP GLU ARG PRO THR PHE LYS ILE LEU LEU
SEQRES 21 A 270 SER ASN ILE LEU ASP VAL MET ASP GLU GLU
HET YXJ A 701 56
HET EDO A 702 4
HET EDO A 703 4
HET CL A 704 1
HETNAM YXJ 5-(PIPERIDIN-1-YL)-3-[4-(PIPERIDIN-4-YL)
HETNAM 2 YXJ ANILINO]PYRAZINE-2-CARBOXAMIDE
HETNAM EDO 1,2-ETHANEDIOL
HETNAM CL CHLORIDE ION
HETSYN EDO ETHYLENE GLYCOL
FORMUL 2 YXJ C21 H28 N6 O
FORMUL 3 EDO 2(C2 H6 O2)
FORMUL 5 CL CL 1-
FORMUL 6 HOH *249(H2 O)
HELIX 1 AA1 ASP A 398 LYS A 400 5 3
HELIX 2 AA2 SER A 438 ASN A 451 1 14
HELIX 3 AA3 CYS A 481 GLU A 488 1 8
HELIX 4 AA4 MET A 489 ARG A 492 5 4
HELIX 5 AA5 GLN A 494 LYS A 515 1 22
HELIX 6 AA6 ALA A 523 ARG A 525 5 3
HELIX 7 AA7 GLY A 541 VAL A 546 5 6
HELIX 8 AA8 ASP A 548 SER A 553 1 6
HELIX 9 AA9 PRO A 560 SER A 564 5 5
HELIX 10 AB1 PRO A 565 SER A 572 1 8
HELIX 11 AB2 SER A 575 SER A 592 1 18
HELIX 12 AB3 THR A 602 GLY A 613 1 12
HELIX 13 AB4 SER A 623 CYS A 633 1 11
HELIX 14 AB5 LYS A 637 ARG A 641 5 5
HELIX 15 AB6 THR A 643 GLU A 658 1 16
SHEET 1 AA1 5 LEU A 402 GLY A 411 0
SHEET 2 AA1 5 GLY A 414 TRP A 421 -1 O TYR A 418 N LYS A 406
SHEET 3 AA1 5 TYR A 425 MET A 431 -1 O ILE A 429 N LYS A 417
SHEET 4 AA1 5 PHE A 471 GLU A 475 -1 O ILE A 472 N LYS A 430
SHEET 5 AA1 5 LEU A 460 CYS A 464 -1 N CYS A 464 O PHE A 471
SHEET 1 AA2 2 CYS A 527 VAL A 529 0
SHEET 2 AA2 2 VAL A 535 VAL A 537 -1 O LYS A 536 N LEU A 528
CISPEP 1 ARG A 468 PRO A 469 0 -5.06
CRYST1 37.993 76.032 105.120 90.00 90.00 90.00 P 21 21 21 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.026321 0.000000 0.000000 0.00000
SCALE2 0.000000 0.013152 0.000000 0.00000
SCALE3 0.000000 0.000000 0.009513 0.00000