data_8GD6 # _entry.id 8GD6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8GD6 pdb_00008gd6 10.2210/pdb8gd6/pdb WWPDB D_1000272524 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8GD6 _pdbx_database_status.recvd_initial_deposition_date 2023-03-03 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Hess, S.S.' 1 0000-0002-2125-7679 'Nguyen, A.I.' 2 0000-0003-4137-6453 # loop_ _citation.abstract _citation.abstract_id_CAS _citation.book_id_ISBN _citation.book_publisher _citation.book_publisher_city _citation.book_title _citation.coordinate_linkage _citation.country _citation.database_id_Medline _citation.details _citation.id _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_full _citation.journal_issue _citation.journal_volume _citation.language _citation.page_first _citation.page_last _citation.title _citation.year _citation.database_id_CSD _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_patent _citation.unpublished_flag ? ? ? ? ? ? ? US ? ? primary J.Am.Chem.Soc. JACSAT ? 1520-5126 ? ? 145 ? 19588 19600 'Noncovalent Peptide Assembly Enables Crystalline, Permutable, and Reactive Thiol Frameworks.' 2023 ? 10.1021/jacs.3c03645 37639365 ? ? ? ? ? ? ? ? ? DK ? ? 1 'Acta Crystallogr., Sect. D: Biol. Crystallogr.' ABCRE6 0766 0907-4449 ? ? 68 ? 352 67 'Towards automated crystallographic structure refinement with phenix.refine.' 2012 ? ? ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hess, S.S.' 1 ? primary 'Coppola, F.' 2 0000-0002-2429-204X primary 'Dang, V.T.' 3 ? primary 'Tran, P.N.' 4 ? primary 'Mickel, P.J.' 5 ? primary 'Oktawiec, J.' 6 0000-0002-2895-3327 primary 'Ren, Z.' 7 0000-0001-7098-3127 primary 'Kral, P.' 8 0000-0003-2992-9027 primary 'Nguyen, A.I.' 9 0000-0003-4137-6453 1 'Afonine, P.V.' 10 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 95.026 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 8GD6 _cell.details ? _cell.formula_units_Z ? _cell.length_a 54.848 _cell.length_a_esd ? _cell.length_b 9.172 _cell.length_b_esd ? _cell.length_c 16.571 _cell.length_c_esd ? _cell.volume 8304.252 _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8GD6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn NIO-LEU-AIB-ALA-AIB-LEU-AIB-CYS-AIB-LEU-BPH 1848.422 1 ? ? ? ? 2 non-polymer syn 'NICOTINIC ACID' 123.109 1 ? ? ? ? 3 non-polymer syn "5'-(hydrazinecarbonyl)[2,2'-bipyridine]-5-carboxamide" 257.248 1 ? ? ? ? 4 water nat water 18.015 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(NIO)L(AIB)A(AIB)L(AIB)C(AIB)L(BPH)' _entity_poly.pdbx_seq_one_letter_code_can XLAAALACALX _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 NIO n 1 2 LEU n 1 3 AIB n 1 4 ALA n 1 5 AIB n 1 6 LEU n 1 7 AIB n 1 8 CYS n 1 9 AIB n 1 10 LEU n 1 11 BPH n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 11 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8GD6 _struct_ref.pdbx_db_accession 8GD6 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8GD6 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 11 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 8GD6 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 11 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 11 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight AIB 'L-peptide linking' n 'ALPHA-AMINOISOBUTYRIC ACID' ? 'C4 H9 N O2' 103.120 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 BPH non-polymer . 'BACTERIOPHEOPHYTIN A' ? 'C55 H76 N4 O6' 889.215 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 HOH non-polymer . WATER ? 'H2 O' 18.015 I77 non-polymer . "5'-(hydrazinecarbonyl)[2,2'-bipyridine]-5-carboxamide" ? 'C12 H11 N5 O2' 257.248 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 NIO non-polymer . 'NICOTINIC ACID' ? 'C6 H5 N O2' 123.109 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8GD6 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'SLOW COOLING' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details Water/Acetonitrile _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 298 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 9M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2022-05-16 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.619920 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 21-ID-D' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.619920 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 21-ID-D _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate 7.18 _reflns.entry_id 8GD6 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 0.91 _reflns.d_resolution_low 27.32 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 10096 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 94.25 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 3.2 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 8.53 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.2199 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 0.91 _reflns_shell.d_res_low 0.9426 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 561 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.6233 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 11.44 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8GD6 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 0.91 _refine.ls_d_res_low 27.32 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 10096 _refine.ls_number_reflns_R_free 1019 _refine.ls_number_reflns_R_work 9077 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 87.38 _refine.ls_percent_reflns_R_free 10.09 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2149 _refine.ls_R_factor_R_free 0.2365 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2127 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 33.7528 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1185 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 0.91 _refine_hist.d_res_low 27.32 _refine_hist.number_atoms_solvent 1 _refine_hist.number_atoms_total 87 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 59 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 27 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0085 ? 93 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.7934 ? 132 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0497 ? 9 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0056 ? 15 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 35.8564 ? 17 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 0.91 0.96 . . 144 1290 86.02 . . . . 0.3585 . . . . . . . . . . . 0.3774 'X-RAY DIFFRACTION' 0.96 1.02 . . 141 1279 85.65 . . . . 0.2944 . . . . . . . . . . . 0.3073 'X-RAY DIFFRACTION' 1.02 1.10 . . 146 1302 89.22 . . . . 0.2471 . . . . . . . . . . . 0.2566 'X-RAY DIFFRACTION' 1.10 1.21 . . 151 1306 88.84 . . . . 0.2219 . . . . . . . . . . . 0.2498 'X-RAY DIFFRACTION' 1.21 1.38 . . 154 1343 89.69 . . . . 0.2206 . . . . . . . . . . . 0.2601 'X-RAY DIFFRACTION' 1.38 1.74 . . 143 1322 89.00 . . . . 0.2136 . . . . . . . . . . . 0.1985 'X-RAY DIFFRACTION' 1.74 27.32 . . 140 1235 83.28 . . . . 0.1814 . . . . . . . . . . . 0.2208 # _struct.entry_id 8GD6 _struct.title 'Porous framework formed by assembly of a bipyridyl-conjugated helical peptide' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8GD6 _struct_keywords.text 'DE NOVO PROTEIN' _struct_keywords.pdbx_keywords 'DE NOVO PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id AA1 _struct_conf.beg_label_comp_id LEU _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 2 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id LEU _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 10 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id LEU _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 2 _struct_conf.end_auth_comp_id LEU _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 10 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A LEU 2 C ? ? ? 1_555 A AIB 3 N A ? A LEU 2 A AIB 3 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale2 covale one ? A LEU 2 N ? ? ? 1_555 B NIO . C6 ? ? A LEU 2 A NIO 101 1_555 ? ? ? ? ? ? ? 1.421 ? ? covale3 covale both ? A AIB 3 C A ? ? 1_555 A ALA 4 N ? ? A AIB 3 A ALA 4 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale4 covale both ? A ALA 4 C ? ? ? 1_555 A AIB 5 N ? ? A ALA 4 A AIB 5 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale5 covale both ? A AIB 5 C ? ? ? 1_555 A LEU 6 N ? ? A AIB 5 A LEU 6 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale6 covale both ? A LEU 6 C ? ? ? 1_555 A AIB 7 N ? ? A LEU 6 A AIB 7 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale7 covale both ? A AIB 7 C ? ? ? 1_555 A CYS 8 N A ? A AIB 7 A CYS 8 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale8 covale both ? A AIB 7 C ? ? ? 1_555 A CYS 8 N B ? A AIB 7 A CYS 8 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale9 covale both ? A CYS 8 C A ? ? 1_555 A AIB 9 N ? ? A CYS 8 A AIB 9 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale10 covale both ? A CYS 8 C B ? ? 1_555 A AIB 9 N ? ? A CYS 8 A AIB 9 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale11 covale both ? A AIB 9 C ? ? ? 1_555 A LEU 10 N ? ? A AIB 9 A LEU 10 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale12 covale one ? A LEU 10 C ? ? ? 1_555 C I77 . N15 ? ? A LEU 10 A I77 102 1_555 ? ? ? ? ? ? ? 1.423 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 8GD6 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.018232 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001603 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.109027 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.060579 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 2.51340 1.74867 1.72398 ? 31.80534 0.44561 10.58317 ? 0.0 ;3-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? H ? ? 0.53795 0.34799 0.11320 ? 10.08003 29.74760 2.57510 ? 0.0 ;3-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 2.99955 2.25584 1.72788 ? 23.27268 7.45433 0.31622 ? 0.0 ;3-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? S ? ? 9.55732 6.39887 ? ? 1.23737 29.19336 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 NIO 1 1 ? ? ? A . n A 1 2 LEU 2 2 2 LEU LEU A . n A 1 3 AIB 3 3 3 AIB AIB A . n A 1 4 ALA 4 4 4 ALA ALA A . n A 1 5 AIB 5 5 5 AIB AIB A . n A 1 6 LEU 6 6 6 LEU LEU A . n A 1 7 AIB 7 7 7 AIB AIB A . n A 1 8 CYS 8 8 8 CYS CYS A . n A 1 9 AIB 9 9 9 AIB AIB A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 BPH 11 11 ? ? ? A . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email andyn@uic.edu _pdbx_contact_author.name_first Andy _pdbx_contact_author.name_last Nguyen _pdbx_contact_author.name_mi I _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-4137-6453 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NIO 1 101 1 NIO NIO A . C 3 I77 1 102 11 I77 BPH A . D 4 HOH 1 201 1 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2023-11-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -x,y,-z 3 x+1/2,y+1/2,z 4 -x+1/2,y+1/2,-z # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.19.2_4158 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _pdbx_entry_details.entry_id 8GD6 _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A NIO 1 ? A NIO 1 2 1 Y 1 A BPH 11 ? A BPH 11 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal AIB N N N N 1 AIB CA C N N 2 AIB C C N N 3 AIB O O N N 4 AIB OXT O N N 5 AIB CB1 C N N 6 AIB CB2 C N N 7 AIB H H N N 8 AIB H2 H N N 9 AIB HXT H N N 10 AIB HB11 H N N 11 AIB HB12 H N N 12 AIB HB13 H N N 13 AIB HB21 H N N 14 AIB HB22 H N N 15 AIB HB23 H N N 16 ALA N N N N 17 ALA CA C N S 18 ALA C C N N 19 ALA O O N N 20 ALA CB C N N 21 ALA OXT O N N 22 ALA H H N N 23 ALA H2 H N N 24 ALA HA H N N 25 ALA HB1 H N N 26 ALA HB2 H N N 27 ALA HB3 H N N 28 ALA HXT H N N 29 BPH O1D O N N 30 BPH CGD C N N 31 BPH O2D O N N 32 BPH CED C N N 33 BPH CBD C N R 34 BPH CHA C Y N 35 BPH C4D C Y N 36 BPH C3D C Y N 37 BPH CAD C N N 38 BPH OBD O N N 39 BPH C2D C Y N 40 BPH CMD C N N 41 BPH C1D C Y N 42 BPH ND N Y N 43 BPH CHD C Y N 44 BPH C4C C Y N 45 BPH C3C C N R 46 BPH CAC C N N 47 BPH CBC C N N 48 BPH C2C C N R 49 BPH CMC C N N 50 BPH C1C C Y N 51 BPH NC N Y N 52 BPH CHC C Y N 53 BPH C4B C Y N 54 BPH C3B C Y N 55 BPH CAB C N N 56 BPH CBB C N N 57 BPH OBB O N N 58 BPH C2B C Y N 59 BPH CMB C N N 60 BPH C1B C Y N 61 BPH NB N Y N 62 BPH CHB C Y N 63 BPH C4A C Y N 64 BPH C3A C N S 65 BPH CMA C N N 66 BPH C2A C N S 67 BPH C1A C Y N 68 BPH NA N Y N 69 BPH CAA C N N 70 BPH CBA C N N 71 BPH CGA C N N 72 BPH O1A O N N 73 BPH O2A O N N 74 BPH C1 C N N 75 BPH C2 C N N 76 BPH C3 C N N 77 BPH C4 C N N 78 BPH C5 C N N 79 BPH C6 C N N 80 BPH C7 C N N 81 BPH C8 C N R 82 BPH C9 C N N 83 BPH C10 C N N 84 BPH C11 C N N 85 BPH C12 C N N 86 BPH C13 C N R 87 BPH C14 C N N 88 BPH C15 C N N 89 BPH C16 C N N 90 BPH C17 C N N 91 BPH C18 C N N 92 BPH C19 C N N 93 BPH C20 C N N 94 BPH HED1 H N N 95 BPH HED2 H N N 96 BPH HED3 H N N 97 BPH HBD H N N 98 BPH HMD1 H N N 99 BPH HMD2 H N N 100 BPH HMD3 H N N 101 BPH HD H N N 102 BPH HHD H N N 103 BPH H3C H N N 104 BPH HAC1 H N N 105 BPH HAC2 H N N 106 BPH HBC1 H N N 107 BPH HBC2 H N N 108 BPH HBC3 H N N 109 BPH H2C H N N 110 BPH HMC1 H N N 111 BPH HMC2 H N N 112 BPH HMC3 H N N 113 BPH HHC H N N 114 BPH HBB1 H N N 115 BPH HBB2 H N N 116 BPH HBB3 H N N 117 BPH HMB1 H N N 118 BPH HMB2 H N N 119 BPH HMB3 H N N 120 BPH HB H N N 121 BPH HHB H N N 122 BPH H3A H N N 123 BPH HMA1 H N N 124 BPH HMA2 H N N 125 BPH HMA3 H N N 126 BPH H2A H N N 127 BPH HAA1 H N N 128 BPH HAA2 H N N 129 BPH HBA1 H N N 130 BPH HBA2 H N N 131 BPH H1C1 H N N 132 BPH H1C2 H N N 133 BPH H2 H N N 134 BPH H4C1 H N N 135 BPH H4C2 H N N 136 BPH H4C3 H N N 137 BPH H5C1 H N N 138 BPH H5C2 H N N 139 BPH H6C1 H N N 140 BPH H6C2 H N N 141 BPH H7C1 H N N 142 BPH H7C2 H N N 143 BPH H8 H N N 144 BPH H9C1 H N N 145 BPH H9C2 H N N 146 BPH H9C3 H N N 147 BPH H101 H N N 148 BPH H102 H N N 149 BPH H111 H N N 150 BPH H112 H N N 151 BPH H121 H N N 152 BPH H122 H N N 153 BPH H13 H N N 154 BPH H141 H N N 155 BPH H142 H N N 156 BPH H143 H N N 157 BPH H151 H N N 158 BPH H152 H N N 159 BPH H161 H N N 160 BPH H162 H N N 161 BPH H171 H N N 162 BPH H172 H N N 163 BPH H18 H N N 164 BPH H191 H N N 165 BPH H192 H N N 166 BPH H193 H N N 167 BPH H201 H N N 168 BPH H202 H N N 169 BPH H203 H N N 170 CYS N N N N 171 CYS CA C N R 172 CYS C C N N 173 CYS O O N N 174 CYS CB C N N 175 CYS SG S N N 176 CYS OXT O N N 177 CYS H H N N 178 CYS H2 H N N 179 CYS HA H N N 180 CYS HB2 H N N 181 CYS HB3 H N N 182 CYS HG H N N 183 CYS HXT H N N 184 HOH O O N N 185 HOH H1 H N N 186 HOH H2 H N N 187 I77 C11 C Y N 188 I77 C12 C Y N 189 I77 C13 C N N 190 I77 C17 C Y N 191 I77 C18 C Y N 192 I77 C02 C N N 193 I77 C03 C Y N 194 I77 C04 C Y N 195 I77 C05 C Y N 196 I77 C06 C Y N 197 I77 C08 C Y N 198 I77 C09 C Y N 199 I77 N01 N N N 200 I77 N07 N Y N 201 I77 N10 N Y N 202 I77 N14 N N N 203 I77 N15 N N N 204 I77 O16 O N N 205 I77 O19 O N N 206 I77 H111 H N N 207 I77 H171 H N N 208 I77 H181 H N N 209 I77 H041 H N N 210 I77 H051 H N N 211 I77 H061 H N N 212 I77 H011 H N N 213 I77 H012 H N N 214 I77 H141 H N N 215 I77 H1 H N N 216 I77 H2 H N N 217 LEU N N N N 218 LEU CA C N S 219 LEU C C N N 220 LEU O O N N 221 LEU CB C N N 222 LEU CG C N N 223 LEU CD1 C N N 224 LEU CD2 C N N 225 LEU OXT O N N 226 LEU H H N N 227 LEU H2 H N N 228 LEU HA H N N 229 LEU HB2 H N N 230 LEU HB3 H N N 231 LEU HG H N N 232 LEU HD11 H N N 233 LEU HD12 H N N 234 LEU HD13 H N N 235 LEU HD21 H N N 236 LEU HD22 H N N 237 LEU HD23 H N N 238 LEU HXT H N N 239 NIO N N Y N 240 NIO C1 C Y N 241 NIO C2 C Y N 242 NIO C3 C Y N 243 NIO C4 C Y N 244 NIO C5 C Y N 245 NIO C6 C N N 246 NIO O1 O N N 247 NIO O2 O N N 248 NIO H1 H N N 249 NIO H3 H N N 250 NIO H4 H N N 251 NIO H5 H N N 252 NIO HO2 H N N 253 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal AIB N CA sing N N 1 AIB N H sing N N 2 AIB N H2 sing N N 3 AIB CA C sing N N 4 AIB CA CB1 sing N N 5 AIB CA CB2 sing N N 6 AIB C O doub N N 7 AIB C OXT sing N N 8 AIB OXT HXT sing N N 9 AIB CB1 HB11 sing N N 10 AIB CB1 HB12 sing N N 11 AIB CB1 HB13 sing N N 12 AIB CB2 HB21 sing N N 13 AIB CB2 HB22 sing N N 14 AIB CB2 HB23 sing N N 15 ALA N CA sing N N 16 ALA N H sing N N 17 ALA N H2 sing N N 18 ALA CA C sing N N 19 ALA CA CB sing N N 20 ALA CA HA sing N N 21 ALA C O doub N N 22 ALA C OXT sing N N 23 ALA CB HB1 sing N N 24 ALA CB HB2 sing N N 25 ALA CB HB3 sing N N 26 ALA OXT HXT sing N N 27 BPH O1D CGD doub N N 28 BPH CGD O2D sing N N 29 BPH CGD CBD sing N N 30 BPH O2D CED sing N N 31 BPH CBD CHA sing N N 32 BPH CBD CAD sing N N 33 BPH CHA C4D doub Y N 34 BPH CHA C1A sing Y N 35 BPH C4D C3D sing Y N 36 BPH C4D ND sing Y N 37 BPH C3D CAD sing N N 38 BPH C3D C2D doub Y N 39 BPH CAD OBD doub N N 40 BPH C2D CMD sing N N 41 BPH C2D C1D sing Y N 42 BPH C1D ND sing Y N 43 BPH C1D CHD doub Y N 44 BPH CHD C4C sing Y N 45 BPH C4C C3C sing N N 46 BPH C4C NC doub Y N 47 BPH C3C CAC sing N N 48 BPH C3C C2C sing N N 49 BPH CAC CBC sing N N 50 BPH C2C CMC sing N N 51 BPH C2C C1C sing N N 52 BPH C1C NC sing Y N 53 BPH C1C CHC doub Y N 54 BPH CHC C4B sing Y N 55 BPH C4B C3B doub Y N 56 BPH C4B NB sing Y N 57 BPH C3B CAB sing N N 58 BPH C3B C2B sing Y N 59 BPH CAB CBB sing N N 60 BPH CAB OBB doub N N 61 BPH C2B CMB sing N N 62 BPH C2B C1B doub Y N 63 BPH C1B NB sing Y N 64 BPH C1B CHB sing Y N 65 BPH CHB C4A doub Y N 66 BPH C4A C3A sing N N 67 BPH C4A NA sing Y N 68 BPH C3A CMA sing N N 69 BPH C3A C2A sing N N 70 BPH C2A C1A sing N N 71 BPH C2A CAA sing N N 72 BPH C1A NA doub Y N 73 BPH CAA CBA sing N N 74 BPH CBA CGA sing N N 75 BPH CGA O1A doub N N 76 BPH CGA O2A sing N N 77 BPH O2A C1 sing N N 78 BPH C1 C2 sing N N 79 BPH C2 C3 doub N E 80 BPH C3 C4 sing N N 81 BPH C3 C5 sing N N 82 BPH C5 C6 sing N N 83 BPH C6 C7 sing N N 84 BPH C7 C8 sing N N 85 BPH C8 C9 sing N N 86 BPH C8 C10 sing N N 87 BPH C10 C11 sing N N 88 BPH C11 C12 sing N N 89 BPH C12 C13 sing N N 90 BPH C13 C14 sing N N 91 BPH C13 C15 sing N N 92 BPH C15 C16 sing N N 93 BPH C16 C17 sing N N 94 BPH C17 C18 sing N N 95 BPH C18 C19 sing N N 96 BPH C18 C20 sing N N 97 BPH CED HED1 sing N N 98 BPH CED HED2 sing N N 99 BPH CED HED3 sing N N 100 BPH CBD HBD sing N N 101 BPH CMD HMD1 sing N N 102 BPH CMD HMD2 sing N N 103 BPH CMD HMD3 sing N N 104 BPH ND HD sing N N 105 BPH CHD HHD sing N N 106 BPH C3C H3C sing N N 107 BPH CAC HAC1 sing N N 108 BPH CAC HAC2 sing N N 109 BPH CBC HBC1 sing N N 110 BPH CBC HBC2 sing N N 111 BPH CBC HBC3 sing N N 112 BPH C2C H2C sing N N 113 BPH CMC HMC1 sing N N 114 BPH CMC HMC2 sing N N 115 BPH CMC HMC3 sing N N 116 BPH CHC HHC sing N N 117 BPH CBB HBB1 sing N N 118 BPH CBB HBB2 sing N N 119 BPH CBB HBB3 sing N N 120 BPH CMB HMB1 sing N N 121 BPH CMB HMB2 sing N N 122 BPH CMB HMB3 sing N N 123 BPH NB HB sing N N 124 BPH CHB HHB sing N N 125 BPH C3A H3A sing N N 126 BPH CMA HMA1 sing N N 127 BPH CMA HMA2 sing N N 128 BPH CMA HMA3 sing N N 129 BPH C2A H2A sing N N 130 BPH CAA HAA1 sing N N 131 BPH CAA HAA2 sing N N 132 BPH CBA HBA1 sing N N 133 BPH CBA HBA2 sing N N 134 BPH C1 H1C1 sing N N 135 BPH C1 H1C2 sing N N 136 BPH C2 H2 sing N N 137 BPH C4 H4C1 sing N N 138 BPH C4 H4C2 sing N N 139 BPH C4 H4C3 sing N N 140 BPH C5 H5C1 sing N N 141 BPH C5 H5C2 sing N N 142 BPH C6 H6C1 sing N N 143 BPH C6 H6C2 sing N N 144 BPH C7 H7C1 sing N N 145 BPH C7 H7C2 sing N N 146 BPH C8 H8 sing N N 147 BPH C9 H9C1 sing N N 148 BPH C9 H9C2 sing N N 149 BPH C9 H9C3 sing N N 150 BPH C10 H101 sing N N 151 BPH C10 H102 sing N N 152 BPH C11 H111 sing N N 153 BPH C11 H112 sing N N 154 BPH C12 H121 sing N N 155 BPH C12 H122 sing N N 156 BPH C13 H13 sing N N 157 BPH C14 H141 sing N N 158 BPH C14 H142 sing N N 159 BPH C14 H143 sing N N 160 BPH C15 H151 sing N N 161 BPH C15 H152 sing N N 162 BPH C16 H161 sing N N 163 BPH C16 H162 sing N N 164 BPH C17 H171 sing N N 165 BPH C17 H172 sing N N 166 BPH C18 H18 sing N N 167 BPH C19 H191 sing N N 168 BPH C19 H192 sing N N 169 BPH C19 H193 sing N N 170 BPH C20 H201 sing N N 171 BPH C20 H202 sing N N 172 BPH C20 H203 sing N N 173 CYS N CA sing N N 174 CYS N H sing N N 175 CYS N H2 sing N N 176 CYS CA C sing N N 177 CYS CA CB sing N N 178 CYS CA HA sing N N 179 CYS C O doub N N 180 CYS C OXT sing N N 181 CYS CB SG sing N N 182 CYS CB HB2 sing N N 183 CYS CB HB3 sing N N 184 CYS SG HG sing N N 185 CYS OXT HXT sing N N 186 HOH O H1 sing N N 187 HOH O H2 sing N N 188 I77 N15 N14 sing N N 189 I77 O16 C13 doub N N 190 I77 N14 C13 sing N N 191 I77 C13 C12 sing N N 192 I77 C12 C17 doub Y N 193 I77 C12 C11 sing Y N 194 I77 C17 C18 sing Y N 195 I77 C11 N10 doub Y N 196 I77 C18 C09 doub Y N 197 I77 N10 C09 sing Y N 198 I77 C09 C08 sing N N 199 I77 C08 N07 doub Y N 200 I77 C08 C05 sing Y N 201 I77 N07 C06 sing Y N 202 I77 C05 C04 doub Y N 203 I77 C06 C03 doub Y N 204 I77 C04 C03 sing Y N 205 I77 C03 C02 sing N N 206 I77 C02 N01 sing N N 207 I77 C02 O19 doub N N 208 I77 C11 H111 sing N N 209 I77 C17 H171 sing N N 210 I77 C18 H181 sing N N 211 I77 C04 H041 sing N N 212 I77 C05 H051 sing N N 213 I77 C06 H061 sing N N 214 I77 N01 H011 sing N N 215 I77 N01 H012 sing N N 216 I77 N14 H141 sing N N 217 I77 N15 H1 sing N N 218 I77 N15 H2 sing N N 219 LEU N CA sing N N 220 LEU N H sing N N 221 LEU N H2 sing N N 222 LEU CA C sing N N 223 LEU CA CB sing N N 224 LEU CA HA sing N N 225 LEU C O doub N N 226 LEU C OXT sing N N 227 LEU CB CG sing N N 228 LEU CB HB2 sing N N 229 LEU CB HB3 sing N N 230 LEU CG CD1 sing N N 231 LEU CG CD2 sing N N 232 LEU CG HG sing N N 233 LEU CD1 HD11 sing N N 234 LEU CD1 HD12 sing N N 235 LEU CD1 HD13 sing N N 236 LEU CD2 HD21 sing N N 237 LEU CD2 HD22 sing N N 238 LEU CD2 HD23 sing N N 239 LEU OXT HXT sing N N 240 NIO N C1 doub Y N 241 NIO N C5 sing Y N 242 NIO C1 C2 sing Y N 243 NIO C1 H1 sing N N 244 NIO C2 C3 doub Y N 245 NIO C2 C6 sing N N 246 NIO C3 C4 sing Y N 247 NIO C3 H3 sing N N 248 NIO C4 C5 doub Y N 249 NIO C4 H4 sing N N 250 NIO C5 H5 sing N N 251 NIO C6 O1 doub N N 252 NIO C6 O2 sing N N 253 NIO O2 HO2 sing N N 254 # _pdbx_audit_support.funding_organization 'Other private' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'NICOTINIC ACID' NIO 3 "5'-(hydrazinecarbonyl)[2,2'-bipyridine]-5-carboxamide" I77 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type other _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.details model # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _space_group.name_H-M_alt 'C 1 2 1' _space_group.name_Hall 'C 2y' _space_group.IT_number 5 _space_group.crystal_system monoclinic _space_group.id 1 #