HEADER DNA BINDING PROTEIN/DNA 03-MAR-23 8GD7 TITLE LOOP DELETED DNA POLYMERASE THETA POLYMERASE DOMAIN IN COMPLEX WITH TITLE 2 DOUBLE STRAND DNA OVERHANG AND INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE THETA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DNA POLYMERASE ETA; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: LOOP DELETED POLYMERASE DOMAIN; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA TEMPLATE; COMPND 10 CHAIN: E; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA PRIMER; COMPND 14 CHAIN: F; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: POLQ; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 15 ORGANISM_TAXID: 32630 KEYWDS DNA POLYMERASE THETA, INHIBITOR, DNA BINDING PROTEIN, DNA BINDING KEYWDS 2 PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR W.A.FRIED,X.S.CHEN,S.X.LI REVDAT 1 19-JUN-24 8GD7 0 JRNL AUTH W.FRIED,M.TYAGI,L.MINAKHIN,G.CHANDRAMOULY,T.TREDINNICK, JRNL AUTH 2 M.RAMANJULU,W.AUERBACHER,M.CALBERT,T.RUSANOV,T.HOANG, JRNL AUTH 3 N.BORISONNIK,R.BETSCH,J.J.KRAIS,Y.WANG,U.M.VEKARIYA, JRNL AUTH 4 J.GORDON,G.MORTON,T.KENT,T.SKORSKI,N.JOHNSON,W.CHILDERS, JRNL AUTH 5 X.S.CHEN,R.T.POMERANTZ JRNL TITL DISCOVERY OF A SMALL-MOLECULE INHIBITOR THAT TRAPS POL THETA JRNL TITL 2 ON DNA AND SYNERGIZES WITH PARP INHIBITORS. JRNL REF NAT COMMUN V. 15 2862 2024 JRNL REFN ESSN 2041-1723 JRNL PMID 38580648 JRNL DOI 10.1038/S41467-024-46593-1 REMARK 2 REMARK 2 RESOLUTION. 3.24 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.24 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 16943 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.230 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.960 REMARK 3 FREE R VALUE TEST SET COUNT : 1688 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.8600 - 7.4100 1.00 1358 150 0.1784 0.1985 REMARK 3 2 7.4000 - 5.8800 1.00 1300 148 0.2405 0.2790 REMARK 3 3 5.8800 - 5.1400 1.00 1307 139 0.2351 0.2419 REMARK 3 4 5.1400 - 4.6700 1.00 1287 143 0.2066 0.2036 REMARK 3 5 4.6700 - 4.3400 1.00 1284 145 0.2029 0.2228 REMARK 3 6 4.3400 - 4.0800 1.00 1292 140 0.2169 0.2267 REMARK 3 7 4.0800 - 3.8800 1.00 1275 140 0.2448 0.2563 REMARK 3 8 3.8800 - 3.7100 1.00 1254 140 0.2568 0.2580 REMARK 3 9 3.7100 - 3.5700 1.00 1296 143 0.2885 0.2934 REMARK 3 10 3.5700 - 3.4400 0.98 1255 139 0.3205 0.3498 REMARK 3 11 3.4400 - 3.3400 0.96 1222 135 0.3469 0.3384 REMARK 3 12 3.3400 - 3.2400 0.87 1125 126 0.3472 0.3637 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.398 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.801 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 101.8 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 121.7 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 5665 REMARK 3 ANGLE : 0.511 7749 REMARK 3 CHIRALITY : 0.038 857 REMARK 3 PLANARITY : 0.004 909 REMARK 3 DIHEDRAL : 15.759 906 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 51.4540 32.2836 6.6714 REMARK 3 T TENSOR REMARK 3 T11: 0.6119 T22: 0.7380 REMARK 3 T33: 1.0074 T12: 0.0137 REMARK 3 T13: -0.0659 T23: 0.1710 REMARK 3 L TENSOR REMARK 3 L11: 2.6313 L22: 1.8901 REMARK 3 L33: 0.6875 L12: 0.9333 REMARK 3 L13: -0.1946 L23: 0.0510 REMARK 3 S TENSOR REMARK 3 S11: -0.0315 S12: 0.1347 S13: 0.0100 REMARK 3 S21: -0.1594 S22: 0.2255 S23: 0.1424 REMARK 3 S31: -0.1800 S32: -0.0892 S33: -0.1981 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8GD7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-MAR-23. REMARK 100 THE DEPOSITION ID IS D_1000272595. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03320 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 V722 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 V722 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16950 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.240 REMARK 200 RESOLUTION RANGE LOW (A) : 49.490 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 17.40 REMARK 200 R MERGE (I) : 0.26400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.24 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.3 REMARK 200 DATA REDUNDANCY IN SHELL : 9.60 REMARK 200 R MERGE FOR SHELL (I) : 2.41100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.24 M SODIUM CITRATE, 18% (W/V) PEG REMARK 280 3350, 0.1 M BIS TRIS PROPANE PH 7.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 21.05567 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 42.11133 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 42.11133 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 21.05567 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1819 REMARK 465 SER A 1820 REMARK 465 SER A 1821 REMARK 465 SER A 1822 REMARK 465 GLU A 1823 REMARK 465 SER A 1824 REMARK 465 GLY A 1893 REMARK 465 GLY A 1931 REMARK 465 SER A 1932 REMARK 465 GLY A 1933 REMARK 465 GLY A 1934 REMARK 465 GLY A 2172 REMARK 465 SER A 2173 REMARK 465 GLY A 2174 REMARK 465 SER A 2520 REMARK 465 ASP A 2521 REMARK 465 GLY A 2522 REMARK 465 GLY A 2523 REMARK 465 SER A 2524 REMARK 465 GLY A 2525 REMARK 465 GLY A 2526 REMARK 465 DG E 1 REMARK 465 DC E 2 REMARK 465 DG E 3 REMARK 465 DA E 4 REMARK 465 DG E 5 REMARK 465 DA E 6 REMARK 465 DC E 20 REMARK 465 DG E 21 REMARK 465 DT E 22 REMARK 465 DC E 23 REMARK 465 DG E 24 REMARK 465 DC F 1 REMARK 465 DG F 2 REMARK 465 DA F 3 REMARK 465 DC F 4 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DC F 14 O3' REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A1831 33.64 -83.07 REMARK 500 ARG A1910 42.79 -97.49 REMARK 500 GLU A1955 -156.22 -114.74 REMARK 500 ASP A1997 97.52 -161.46 REMARK 500 THR A2179 34.65 -96.26 REMARK 500 VAL A2210 -49.07 -135.50 REMARK 500 GLN A2333 61.08 60.70 REMARK 500 ASP A2357 109.69 -56.47 REMARK 500 ARG A2419 -70.18 -64.78 REMARK 500 THR A2442 -168.55 -70.11 REMARK 500 HIS A2496 -140.85 50.72 REMARK 500 ARG A2530 89.28 -160.05 REMARK 500 SER A2564 49.94 -102.19 REMARK 500 GLU A2584 69.37 -106.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A2601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A2330 OD1 REMARK 620 2 ASP A2540 OD2 74.4 REMARK 620 3 DG3 A2602 O1B 135.6 74.8 REMARK 620 4 DG3 A2602 O1G 107.0 169.7 108.9 REMARK 620 5 DG3 A2602 O3B 144.7 127.8 53.0 56.5 REMARK 620 6 DG3 A2602 O1A 125.4 89.3 85.1 81.6 85.6 REMARK 620 N 1 2 3 4 5 DBREF 8GD7 A 1819 2590 UNP O75417 DPOLQ_HUMAN 1819 2590 DBREF 8GD7 E 1 24 PDB 8GD7 8GD7 1 24 DBREF 8GD7 F 1 14 PDB 8GD7 8GD7 1 14 SEQADV 8GD7 A UNP O75417 SER 1861 DELETION SEQADV 8GD7 A UNP O75417 LEU 1862 DELETION SEQADV 8GD7 A UNP O75417 THR 1863 DELETION SEQADV 8GD7 A UNP O75417 SER 1864 DELETION SEQADV 8GD7 A UNP O75417 SER 1865 DELETION SEQADV 8GD7 A UNP O75417 LYS 1866 DELETION SEQADV 8GD7 A UNP O75417 THR 1867 DELETION SEQADV 8GD7 A UNP O75417 ALA 1868 DELETION SEQADV 8GD7 A UNP O75417 THR 1869 DELETION SEQADV 8GD7 A UNP O75417 ILE 1870 DELETION SEQADV 8GD7 A UNP O75417 GLY 1871 DELETION SEQADV 8GD7 A UNP O75417 SER 1872 DELETION SEQADV 8GD7 A UNP O75417 ARG 1873 DELETION SEQADV 8GD7 A UNP O75417 PHE 1874 DELETION SEQADV 8GD7 A UNP O75417 LYS 1875 DELETION SEQADV 8GD7 A UNP O75417 GLN 1876 DELETION SEQADV 8GD7 A UNP O75417 ALA 1877 DELETION SEQADV 8GD7 A UNP O75417 SER 1878 DELETION SEQADV 8GD7 A UNP O75417 SER 1879 DELETION SEQADV 8GD7 A UNP O75417 PRO 1880 DELETION SEQADV 8GD7 A UNP O75417 GLN 1881 DELETION SEQADV 8GD7 A UNP O75417 GLU 1882 DELETION SEQADV 8GD7 A UNP O75417 ILE 1883 DELETION SEQADV 8GD7 A UNP O75417 PRO 1884 DELETION SEQADV 8GD7 A UNP O75417 ILE 1885 DELETION SEQADV 8GD7 A UNP O75417 ARG 1886 DELETION SEQADV 8GD7 A UNP O75417 ASP 1887 DELETION SEQADV 8GD7 A UNP O75417 ASP 1888 DELETION SEQADV 8GD7 A UNP O75417 GLY 1889 DELETION SEQADV 8GD7 A UNP O75417 PHE 1890 DELETION SEQADV 8GD7 A UNP O75417 PRO 1891 DELETION SEQADV 8GD7 A UNP O75417 ILE 1892 DELETION SEQADV 8GD7 GLY A 1893 UNP O75417 LYS 1893 CONFLICT SEQADV 8GD7 SER A 1894 UNP O75417 GLY 1894 CONFLICT SEQADV 8GD7 GLY A 1895 UNP O75417 CYS 1895 CONFLICT SEQADV 8GD7 A UNP O75417 GLN 1918 DELETION SEQADV 8GD7 A UNP O75417 LYS 1919 DELETION SEQADV 8GD7 A UNP O75417 GLU 1920 DELETION SEQADV 8GD7 A UNP O75417 GLN 1921 DELETION SEQADV 8GD7 A UNP O75417 LYS 1922 DELETION SEQADV 8GD7 A UNP O75417 HIS 1923 DELETION SEQADV 8GD7 A UNP O75417 SER 1924 DELETION SEQADV 8GD7 A UNP O75417 GLU 1925 DELETION SEQADV 8GD7 A UNP O75417 ILE 1926 DELETION SEQADV 8GD7 A UNP O75417 SER 1927 DELETION SEQADV 8GD7 A UNP O75417 ALA 1928 DELETION SEQADV 8GD7 A UNP O75417 SER 1929 DELETION SEQADV 8GD7 GLY A 1930 UNP O75417 LEU 1930 CONFLICT SEQADV 8GD7 GLY A 1931 UNP O75417 VAL 1931 CONFLICT SEQADV 8GD7 SER A 1932 UNP O75417 PRO 1932 CONFLICT SEQADV 8GD7 GLY A 1933 UNP O75417 PRO 1933 CONFLICT SEQADV 8GD7 GLY A 1934 UNP O75417 SER 1934 CONFLICT SEQADV 8GD7 A UNP O75417 ASN 2146 DELETION SEQADV 8GD7 A UNP O75417 ARG 2147 DELETION SEQADV 8GD7 A UNP O75417 GLU 2148 DELETION SEQADV 8GD7 A UNP O75417 MET 2149 DELETION SEQADV 8GD7 A UNP O75417 LYS 2150 DELETION SEQADV 8GD7 A UNP O75417 ASN 2151 DELETION SEQADV 8GD7 A UNP O75417 GLN 2152 DELETION SEQADV 8GD7 A UNP O75417 GLY 2153 DELETION SEQADV 8GD7 A UNP O75417 SER 2154 DELETION SEQADV 8GD7 A UNP O75417 LYS 2155 DELETION SEQADV 8GD7 A UNP O75417 LYS 2156 DELETION SEQADV 8GD7 A UNP O75417 THR 2157 DELETION SEQADV 8GD7 A UNP O75417 LEU 2158 DELETION SEQADV 8GD7 A UNP O75417 GLY 2159 DELETION SEQADV 8GD7 A UNP O75417 SER 2160 DELETION SEQADV 8GD7 A UNP O75417 THR 2161 DELETION SEQADV 8GD7 A UNP O75417 ARG 2162 DELETION SEQADV 8GD7 A UNP O75417 ARG 2163 DELETION SEQADV 8GD7 A UNP O75417 GLY 2164 DELETION SEQADV 8GD7 A UNP O75417 ILE 2165 DELETION SEQADV 8GD7 A UNP O75417 ASP 2166 DELETION SEQADV 8GD7 A UNP O75417 ASN 2167 DELETION SEQADV 8GD7 A UNP O75417 GLY 2168 DELETION SEQADV 8GD7 A UNP O75417 ARG 2169 DELETION SEQADV 8GD7 A UNP O75417 LYS 2170 DELETION SEQADV 8GD7 GLY A 2171 UNP O75417 LEU 2171 CONFLICT SEQADV 8GD7 GLY A 2172 UNP O75417 ARG 2172 CONFLICT SEQADV 8GD7 SER A 2173 UNP O75417 LEU 2173 CONFLICT SEQADV 8GD7 GLY A 2175 UNP O75417 ARG 2175 CONFLICT SEQADV 8GD7 A UNP O75417 PRO 2261 DELETION SEQADV 8GD7 A UNP O75417 THR 2262 DELETION SEQADV 8GD7 A UNP O75417 LEU 2263 DELETION SEQADV 8GD7 A UNP O75417 VAL 2264 DELETION SEQADV 8GD7 A UNP O75417 GLY 2265 DELETION SEQADV 8GD7 A UNP O75417 GLU 2266 DELETION SEQADV 8GD7 A UNP O75417 SER 2267 DELETION SEQADV 8GD7 A UNP O75417 PRO 2268 DELETION SEQADV 8GD7 A UNP O75417 PRO 2269 DELETION SEQADV 8GD7 A UNP O75417 SER 2270 DELETION SEQADV 8GD7 A UNP O75417 GLN 2271 DELETION SEQADV 8GD7 A UNP O75417 ALA 2272 DELETION SEQADV 8GD7 A UNP O75417 VAL 2273 DELETION SEQADV 8GD7 A UNP O75417 GLY 2274 DELETION SEQADV 8GD7 A UNP O75417 LYS 2275 DELETION SEQADV 8GD7 A UNP O75417 GLY 2276 DELETION SEQADV 8GD7 A UNP O75417 LEU 2277 DELETION SEQADV 8GD7 A UNP O75417 LEU 2278 DELETION SEQADV 8GD7 A UNP O75417 PRO 2279 DELETION SEQADV 8GD7 A UNP O75417 MET 2280 DELETION SEQADV 8GD7 A UNP O75417 GLY 2281 DELETION SEQADV 8GD7 A UNP O75417 ARG 2282 DELETION SEQADV 8GD7 A UNP O75417 GLY 2283 DELETION SEQADV 8GD7 A UNP O75417 LYS 2284 DELETION SEQADV 8GD7 A UNP O75417 TYR 2285 DELETION SEQADV 8GD7 A UNP O75417 LYS 2286 DELETION SEQADV 8GD7 A UNP O75417 LYS 2287 DELETION SEQADV 8GD7 A UNP O75417 GLY 2288 DELETION SEQADV 8GD7 A UNP O75417 PHE 2289 DELETION SEQADV 8GD7 A UNP O75417 SER 2290 DELETION SEQADV 8GD7 A UNP O75417 VAL 2291 DELETION SEQADV 8GD7 A UNP O75417 ASN 2292 DELETION SEQADV 8GD7 A UNP O75417 PRO 2293 DELETION SEQADV 8GD7 A UNP O75417 ARG 2294 DELETION SEQADV 8GD7 A UNP O75417 CYS 2295 DELETION SEQADV 8GD7 A UNP O75417 GLN 2296 DELETION SEQADV 8GD7 A UNP O75417 ALA 2297 DELETION SEQADV 8GD7 A UNP O75417 GLN 2298 DELETION SEQADV 8GD7 A UNP O75417 MET 2299 DELETION SEQADV 8GD7 A UNP O75417 GLU 2300 DELETION SEQADV 8GD7 A UNP O75417 GLU 2301 DELETION SEQADV 8GD7 A UNP O75417 ARG 2302 DELETION SEQADV 8GD7 GLY A 2303 UNP O75417 ALA 2303 CONFLICT SEQADV 8GD7 GLY A 2304 UNP O75417 ALA 2304 CONFLICT SEQADV 8GD7 SER A 2305 UNP O75417 ASP 2305 CONFLICT SEQADV 8GD7 GLY A 2306 UNP O75417 ARG 2306 CONFLICT SEQADV 8GD7 A UNP O75417 GLN 2513 DELETION SEQADV 8GD7 A UNP O75417 THR 2514 DELETION SEQADV 8GD7 A UNP O75417 GLY 2515 DELETION SEQADV 8GD7 A UNP O75417 LEU 2516 DELETION SEQADV 8GD7 A UNP O75417 SER 2517 DELETION SEQADV 8GD7 A UNP O75417 ARG 2518 DELETION SEQADV 8GD7 A UNP O75417 LYS 2519 DELETION SEQADV 8GD7 A UNP O75417 ARG 2520 DELETION SEQADV 8GD7 A UNP O75417 LYS 2521 DELETION SEQADV 8GD7 GLY A 2522 UNP O75417 LEU 2522 CONFLICT SEQADV 8GD7 GLY A 2523 UNP O75417 GLN 2523 CONFLICT SEQADV 8GD7 SER A 2524 UNP O75417 GLY 2524 CONFLICT SEQADV 8GD7 GLY A 2525 UNP O75417 MET 2525 CONFLICT SEQADV 8GD7 GLY A 2526 UNP O75417 PHE 2526 CONFLICT SEQRES 1 A 652 SER SER SER SER GLU SER LEU SER ILE ILE ASP VAL ALA SEQRES 2 A 652 SER ASP GLN ASN LEU PHE GLN THR PHE ILE LYS GLU TRP SEQRES 3 A 652 ARG CYS LYS LYS ARG PHE SER ILE SER LEU ALA CYS GLU SEQRES 4 A 652 LYS ILE ARG GLY SER GLY ASP ASP THR LEU VAL VAL GLY SEQRES 5 A 652 LEU ALA VAL CYS TRP GLY GLY ARG ASP ALA TYR TYR PHE SEQRES 6 A 652 SER LEU GLY GLY SER GLY GLY LEU ASP PRO SER LEU THR SEQRES 7 A 652 LEU LYS ASP ARG MET TRP TYR LEU GLN SER CYS LEU ARG SEQRES 8 A 652 LYS GLU SER ASP LYS GLU CYS SER VAL VAL ILE TYR ASP SEQRES 9 A 652 PHE ILE GLN SER TYR LYS ILE LEU LEU LEU SER CYS GLY SEQRES 10 A 652 ILE SER LEU GLU GLN SER TYR GLU ASP PRO LYS VAL ALA SEQRES 11 A 652 CYS TRP LEU LEU ASP PRO ASP SER GLN GLU PRO THR LEU SEQRES 12 A 652 HIS SER ILE VAL THR SER PHE LEU PRO HIS GLU LEU PRO SEQRES 13 A 652 LEU LEU GLU GLY MET GLU THR SER GLN GLY ILE GLN SER SEQRES 14 A 652 LEU GLY LEU ASN ALA GLY SER GLU HIS SER GLY ARG TYR SEQRES 15 A 652 ARG ALA SER VAL GLU SER ILE LEU ILE PHE ASN SER MET SEQRES 16 A 652 ASN GLN LEU ASN SER LEU LEU GLN LYS GLU ASN LEU GLN SEQRES 17 A 652 ASP VAL PHE ARG LYS VAL GLU MET PRO SER GLN TYR CYS SEQRES 18 A 652 LEU ALA LEU LEU GLU LEU ASN GLY ILE GLY PHE SER THR SEQRES 19 A 652 ALA GLU CYS GLU SER GLN LYS HIS ILE MET GLN ALA LYS SEQRES 20 A 652 LEU ASP ALA ILE GLU THR GLN ALA TYR GLN LEU ALA GLY SEQRES 21 A 652 HIS SER PHE SER PHE THR SER SER ASP ASP ILE ALA GLU SEQRES 22 A 652 VAL LEU PHE LEU GLU LEU LYS LEU PRO PRO GLY GLY SER SEQRES 23 A 652 GLY GLY GLN PHE SER THR SER LYS ASP VAL LEU ASN LYS SEQRES 24 A 652 LEU LYS ALA LEU HIS PRO LEU PRO GLY LEU ILE LEU GLU SEQRES 25 A 652 TRP ARG ARG ILE THR ASN ALA ILE THR LYS VAL VAL PHE SEQRES 26 A 652 PRO LEU GLN ARG GLU LYS CYS LEU ASN PRO PHE LEU GLY SEQRES 27 A 652 MET GLU ARG ILE TYR PRO VAL SER GLN SER HIS THR ALA SEQRES 28 A 652 THR GLY ARG ILE THR PHE THR GLU PRO ASN ILE GLN ASN SEQRES 29 A 652 VAL PRO ARG ASP PHE GLU ILE LYS MET GLY GLY SER GLY SEQRES 30 A 652 GLY MET PRO PHE SER ILE SER MET ARG HIS ALA PHE VAL SEQRES 31 A 652 PRO PHE PRO GLY GLY SER ILE LEU ALA ALA ASP TYR SER SEQRES 32 A 652 GLN LEU GLU LEU ARG ILE LEU ALA HIS LEU SER HIS ASP SEQRES 33 A 652 ARG ARG LEU ILE GLN VAL LEU ASN THR GLY ALA ASP VAL SEQRES 34 A 652 PHE ARG SER ILE ALA ALA GLU TRP LYS MET ILE GLU PRO SEQRES 35 A 652 GLU SER VAL GLY ASP ASP LEU ARG GLN GLN ALA LYS GLN SEQRES 36 A 652 ILE CYS TYR GLY ILE ILE TYR GLY MET GLY ALA LYS SER SEQRES 37 A 652 LEU GLY GLU GLN MET GLY ILE LYS GLU ASN ASP ALA ALA SEQRES 38 A 652 CYS TYR ILE ASP SER PHE LYS SER ARG TYR THR GLY ILE SEQRES 39 A 652 ASN GLN PHE MET THR GLU THR VAL LYS ASN CYS LYS ARG SEQRES 40 A 652 ASP GLY PHE VAL GLN THR ILE LEU GLY ARG ARG ARG TYR SEQRES 41 A 652 LEU PRO GLY ILE LYS ASP ASN ASN PRO TYR ARG LYS ALA SEQRES 42 A 652 HIS ALA GLU ARG GLN ALA ILE ASN THR ILE VAL GLN GLY SEQRES 43 A 652 SER ALA ALA ASP ILE VAL LYS ILE ALA THR VAL ASN ILE SEQRES 44 A 652 GLN LYS GLN LEU GLU THR PHE HIS SER THR PHE LYS SER SEQRES 45 A 652 HIS GLY HIS ARG GLU GLY MET LEU GLN SER ASP GLY GLY SEQRES 46 A 652 SER GLY GLY CYS PRO ILE ARG GLY GLY PHE PHE ILE LEU SEQRES 47 A 652 GLN LEU HIS ASP GLU LEU LEU TYR GLU VAL ALA GLU GLU SEQRES 48 A 652 ASP VAL VAL GLN VAL ALA GLN ILE VAL LYS ASN GLU MET SEQRES 49 A 652 GLU SER ALA VAL LYS LEU SER VAL LYS LEU LYS VAL LYS SEQRES 50 A 652 VAL LYS ILE GLY ALA SER TRP GLY GLU LEU LYS ASP PHE SEQRES 51 A 652 ASP VAL SEQRES 1 E 24 DG DC DG DA DG DA DC DT DC DC DG DC DG SEQRES 2 E 24 DC DT DG DC DG DA DC DG DT DC DG SEQRES 1 F 14 DC DG DA DC DG DT DC DG DC DA DG DC DG SEQRES 2 F 14 DC HET MG A2601 1 HET DG3 A2602 30 HET Z5X A2603 33 HETNAM MG MAGNESIUM ION HETNAM DG3 2'-3'-DIDEOXYGUANOSINE-5'-TRIPHOSPHATE HETNAM Z5X 2-(3-METHYL-2-OXOIMIDAZOLIDIN-1-YL)-4,6- HETNAM 2 Z5X BIS(TRIFLUOROMETHYL)PHENYL (4-FLUOROPHENYL) HETNAM 3 Z5X METHYLCARBAMATE FORMUL 4 MG MG 2+ FORMUL 5 DG3 C10 H16 N5 O12 P3 FORMUL 6 Z5X C20 H16 F7 N3 O3 HELIX 1 AA1 ASP A 1833 ARG A 1845 1 13 HELIX 2 AA2 THR A 1940 ARG A 1953 1 14 HELIX 3 AA3 ASP A 1966 GLY A 1979 1 14 HELIX 4 AA4 ASP A 1988 ASP A 1997 1 10 HELIX 5 AA5 THR A 2004 LEU A 2013 1 10 HELIX 6 AA6 GLU A 2016 GLY A 2022 1 7 HELIX 7 AA7 MET A 2023 GLY A 2028 5 6 HELIX 8 AA8 SER A 2041 GLU A 2067 1 27 HELIX 9 AA9 LEU A 2069 VAL A 2076 1 8 HELIX 10 AB1 VAL A 2076 GLY A 2091 1 16 HELIX 11 AB2 SER A 2095 GLY A 2122 1 28 HELIX 12 AB3 SER A 2129 LEU A 2139 1 11 HELIX 13 AB4 SER A 2180 LYS A 2188 1 9 HELIX 14 AB5 HIS A 2191 VAL A 2210 1 20 HELIX 15 AB6 VAL A 2210 GLU A 2217 1 8 HELIX 16 AB7 SER A 2313 ALA A 2317 5 5 HELIX 17 AB8 GLN A 2333 HIS A 2344 1 12 HELIX 18 AB9 ASP A 2345 GLY A 2355 1 11 HELIX 19 AC1 ASP A 2357 MET A 2368 1 12 HELIX 20 AC2 GLU A 2370 VAL A 2374 5 5 HELIX 21 AC3 GLY A 2375 GLY A 2392 1 18 HELIX 22 AC4 GLY A 2394 GLY A 2403 1 10 HELIX 23 AC5 LYS A 2405 TYR A 2420 1 16 HELIX 24 AC6 TYR A 2420 GLY A 2438 1 19 HELIX 25 AC7 PRO A 2451 ASP A 2455 5 5 HELIX 26 AC8 ASN A 2457 HIS A 2496 1 40 HELIX 27 AC9 SER A 2501 GLN A 2510 1 10 HELIX 28 AD1 ASP A 2550 SER A 2564 1 15 SHEET 1 AA1 6 SER A1826 ASP A1829 0 SHEET 2 AA1 6 ASP A1911 SER A1916 1 O ALA A1912 N SER A1826 SHEET 3 AA1 6 THR A1898 CYS A1906 -1 N VAL A1905 O TYR A1913 SHEET 4 AA1 6 ARG A1849 LYS A1858 -1 N ALA A1855 O VAL A1901 SHEET 5 AA1 6 SER A1961 ILE A1964 1 O VAL A1963 N ILE A1852 SHEET 6 AA1 6 SER A1985 GLU A1987 1 O SER A1985 N VAL A1962 SHEET 1 AA2 3 ILE A2092 GLY A2093 0 SHEET 2 AA2 3 MET A2226 ILE A2229 -1 O ILE A2229 N ILE A2092 SHEET 3 AA2 3 LYS A2218 ASN A2221 -1 N ASN A2221 O MET A2226 SHEET 1 AA3 2 VAL A2232 GLN A2234 0 SHEET 2 AA3 2 THR A2243 THR A2245 -1 O THR A2243 N GLN A2234 SHEET 1 AA4 2 PHE A2256 MET A2260 0 SHEET 2 AA4 2 MET A2308 ILE A2312 -1 O ILE A2312 N PHE A2256 SHEET 1 AA5 5 PHE A2534 LEU A2538 0 SHEET 2 AA5 5 GLU A2541 ALA A2547 -1 O LEU A2543 N LEU A2536 SHEET 3 AA5 5 GLY A2324 TYR A2331 -1 N LEU A2327 O TYR A2544 SHEET 4 AA5 5 VAL A2574 GLY A2579 -1 O LYS A2575 N ASP A2330 SHEET 5 AA5 5 LEU A2585 ASP A2587 -1 O LYS A2586 N ILE A2578 SHEET 1 AA6 2 PHE A2439 GLN A2441 0 SHEET 2 AA6 2 ARG A2447 TYR A2449 -1 O ARG A2448 N VAL A2440 LINK OD1 ASP A2330 MG MG A2601 1555 1555 2.85 LINK OD2 ASP A2540 MG MG A2601 1555 1555 2.41 LINK MG MG A2601 O1B DG3 A2602 1555 1555 2.95 LINK MG MG A2601 O1G DG3 A2602 1555 1555 2.68 LINK MG MG A2601 O3B DG3 A2602 1555 1555 2.67 LINK MG MG A2601 O1A DG3 A2602 1555 1555 2.88 CISPEP 1 GLU A 2246 PRO A 2247 0 -7.73 CRYST1 171.433 171.433 63.167 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005833 0.003368 0.000000 0.00000 SCALE2 0.000000 0.006736 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015831 0.00000