HEADER LYASE/INHIBITOR 07-MAR-23 8GEZ TITLE CRYSTAL STRUCTURE OF SOLUBLE LYTIC TRANSGLYCOSYLASE CJ0843 OF TITLE 2 CAMPYLOBACTER JEJUNI IN COMPLEX WITH LV8036 INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYTIC TRANSGLYCOSYLASE DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TRANSGLYCOSYLASE SLT DOMAIN-CONTAINING PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAMPYLOBACTER JEJUNI; SOURCE 3 ORGANISM_TAXID: 197; SOURCE 4 GENE: A0X18_03655, A0X31_01845, A9372_04065, APU74_07480, SOURCE 5 B1933_07625, BBS05_05650, BCB47_05730, BED64_07690, C3I22_05260, SOURCE 6 C3I27_06990, C3I35_05175, C7N26_08315, CJ274_08505, CV323_05370, SOURCE 7 CWD74_05755, D0W34_08355, D4Q41_06000, D5I02_03510, D6H33_08420, SOURCE 8 DPG08_07275, DUX97_06720, DUY05_08000, DWS06_05135, DYE84_06365, SOURCE 9 E7R20_02805, EAX31_05720, EC071_05580, F0166_06250, F6982_06065, SOURCE 10 F7521_08930, F7J47_05300, F7U05_05765, F8803_06810, F9778_04965, SOURCE 11 FCR67_06545, FPD29_09025, FPT92_05795, FV831_05555, FV933_07400, SOURCE 12 FVI24_07230, FVM64_02425, FVM77_01160, FW220_07595, FW611_08035, SOURCE 13 FW976_03985, FWA25_07655, FY101_03890, FZ445_05005, FZ878_07970, SOURCE 14 FZW01_06295, G3M94_001083, GAX22_07420, GCI37_01695, GI172_07425, SOURCE 15 GIT96_06475, GJ442_07755, GK482_04850, GK486_00445, GL007_04270, SOURCE 16 GL031_07375, GM780_07860, GMG42_07100, GN862_07225, GNO13_05645, SOURCE 17 GNO32_03000, GPD80_07165, GRH33_07480, GRM82_06860, GRO30_05060, SOURCE 18 GRS20_08245, GSH24_05325, GTJ31_06080, GTV40_06285, GTV58_05620, SOURCE 19 GWW45_06140, GY415_000965, GZ489_001419, GZ499_001624, GZ502_000976, SOURCE 20 GZ518_001219; SOURCE 21 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 22 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SOLUBLE LYTIC TRANSGLYCOSYLASE, INHIBITOR, LYASE, LYASE-INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR F.VAN DEN AKKER,V.KUMAR REVDAT 3 05-JUL-23 8GEZ 1 JRNL REVDAT 2 31-MAY-23 8GEZ 1 JRNL REVDAT 1 24-MAY-23 8GEZ 0 JRNL AUTH V.KUMAR,J.BOORMAN,W.J.GREENLEE,X.ZENG,J.LIN,F.VAN DEN AKKER JRNL TITL EXPLORING THE INHIBITION OF THE SOLUBLE LYTIC JRNL TITL 2 TRANSGLYCOSYLASE CJ0843C OF CAMPYLOBACTER JEJUNI VIA JRNL TITL 3 TARGETING DIFFERENT SITES WITH DIFFERENT SCAFFOLDS. JRNL REF PROTEIN SCI. V. 32 E4683 2023 JRNL REFN ESSN 1469-896X JRNL PMID 37209283 JRNL DOI 10.1002/PRO.4683 REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20_4459 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.46 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 62217 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 3189 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.75 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8GEZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-MAR-23. REMARK 100 THE DEPOSITION ID IS D_1000272826. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-NOV-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9201 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62220 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 29.460 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 23.10 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.00000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE PH 5.9 AND 26% REMARK 280 (V/V) PEG 600. PROTEIN BUFFER WAS 10MM HEPES PH 8.0, 200MM REMARK 280 AMMONIUM ACETATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 88.37850 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 88.37850 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 88.37850 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 88.37850 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 88.37850 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 88.37850 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 88.37850 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 88.37850 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 88.37850 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 88.37850 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 88.37850 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 88.37850 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 88.37850 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 88.37850 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 88.37850 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 88.37850 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 88.37850 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 88.37850 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 88.37850 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 88.37850 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 88.37850 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 88.37850 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 88.37850 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 88.37850 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 88.37850 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 88.37850 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 88.37850 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 88.37850 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 88.37850 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 88.37850 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 88.37850 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 88.37850 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 88.37850 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 88.37850 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 88.37850 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 88.37850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 703 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 SER A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 SER A 8 REMARK 465 SER A 9 REMARK 465 GLY A 10 REMARK 465 LEU A 11 REMARK 465 VAL A 12 REMARK 465 PRO A 13 REMARK 465 ARG A 14 REMARK 465 GLY A 15 REMARK 465 SER A 16 REMARK 465 HIS A 17 REMARK 465 MET A 18 REMARK 465 GLN A 19 REMARK 465 GLN A 532 REMARK 465 ASN A 533 REMARK 465 LYS A 534 REMARK 465 ALA A 535 REMARK 465 ASN A 536 REMARK 465 ASP A 537 REMARK 465 LEU A 538 REMARK 465 ASN A 539 REMARK 465 LYS A 540 REMARK 465 SER A 541 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 199 O HOH A 701 1.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 76 CA - CB - CG ANGL. DEV. = 16.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 78 156.25 -37.86 REMARK 500 GLU A 218 -133.89 53.27 REMARK 500 ASN A 358 34.86 38.93 REMARK 500 SER A 391 -5.90 -142.85 REMARK 500 LYS A 454 -68.84 72.73 REMARK 500 REMARK 500 REMARK: NULL DBREF1 8GEZ A 19 541 UNP A0A3I4HTM2_CAMJU DBREF2 8GEZ A A0A3I4HTM2 19 541 SEQADV 8GEZ MET A -2 UNP A0A3I4HTM EXPRESSION TAG SEQADV 8GEZ GLY A -1 UNP A0A3I4HTM EXPRESSION TAG SEQADV 8GEZ SER A 0 UNP A0A3I4HTM EXPRESSION TAG SEQADV 8GEZ SER A 1 UNP A0A3I4HTM EXPRESSION TAG SEQADV 8GEZ HIS A 2 UNP A0A3I4HTM EXPRESSION TAG SEQADV 8GEZ HIS A 3 UNP A0A3I4HTM EXPRESSION TAG SEQADV 8GEZ HIS A 4 UNP A0A3I4HTM EXPRESSION TAG SEQADV 8GEZ HIS A 5 UNP A0A3I4HTM EXPRESSION TAG SEQADV 8GEZ HIS A 6 UNP A0A3I4HTM EXPRESSION TAG SEQADV 8GEZ HIS A 7 UNP A0A3I4HTM EXPRESSION TAG SEQADV 8GEZ SER A 8 UNP A0A3I4HTM EXPRESSION TAG SEQADV 8GEZ SER A 9 UNP A0A3I4HTM EXPRESSION TAG SEQADV 8GEZ GLY A 10 UNP A0A3I4HTM EXPRESSION TAG SEQADV 8GEZ LEU A 11 UNP A0A3I4HTM EXPRESSION TAG SEQADV 8GEZ VAL A 12 UNP A0A3I4HTM EXPRESSION TAG SEQADV 8GEZ PRO A 13 UNP A0A3I4HTM EXPRESSION TAG SEQADV 8GEZ ARG A 14 UNP A0A3I4HTM EXPRESSION TAG SEQADV 8GEZ GLY A 15 UNP A0A3I4HTM EXPRESSION TAG SEQADV 8GEZ SER A 16 UNP A0A3I4HTM EXPRESSION TAG SEQADV 8GEZ HIS A 17 UNP A0A3I4HTM EXPRESSION TAG SEQADV 8GEZ MET A 18 UNP A0A3I4HTM EXPRESSION TAG SEQRES 1 A 544 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 544 LEU VAL PRO ARG GLY SER HIS MET GLN TYR SER ILE GLU SEQRES 3 A 544 LYS LEU LYS LYS GLU GLU ASN SER LEU ALA LYS ASP TYR SEQRES 4 A 544 TYR ILE TYR ARG LEU LEU GLU LYS ASN LYS ILE SER LYS SEQRES 5 A 544 LYS ASP ALA GLN ASP LEU ASN SER HIS ILE PHE ARG TYR SEQRES 6 A 544 ILE GLY LYS ILE LYS SER GLU LEU GLU LYS ILE ILE PRO SEQRES 7 A 544 LEU LYS PRO TYR ILE ASN PRO LYS TYR ALA LYS CYS TYR SEQRES 8 A 544 THR TYR THR ALA ASN THR ILE LEU ASP ALA ASN LEU THR SEQRES 9 A 544 CYS GLN SER VAL ARG LEU ASN SER LEU VAL PHE ILE ALA SEQRES 10 A 544 SER LEU ASN SER LYS ASP ARG THR THR LEU ALA GLN THR SEQRES 11 A 544 PHE LYS ASN GLN ARG PRO ASP LEU THR ASN LEU LEU LEU SEQRES 12 A 544 ALA PHE ASN THR SER ASP PRO MET SER TYR ILE VAL GLN SEQRES 13 A 544 LYS GLU ASP ILE ASN GLY PHE PHE LYS LEU TYR ASN TYR SEQRES 14 A 544 SER LYS LYS TYR ASP LEU ASP LEU ASN THR SER LEU VAL SEQRES 15 A 544 ASN LYS LEU PRO ASN HIS ILE GLY PHE LYS ASP PHE ALA SEQRES 16 A 544 GLN ASN ILE ILE ILE LYS LYS GLU ASN PRO LYS PHE ARG SEQRES 17 A 544 HIS SER MET LEU GLU ILE ASN PRO GLU ASN VAL SER GLU SEQRES 18 A 544 ASP SER ALA PHE TYR LEU GLY VAL ASN ALA LEU THR TYR SEQRES 19 A 544 ASP LYS THR GLU LEU ALA TYR ASP PHE PHE LYS LYS ALA SEQRES 20 A 544 ALA GLN SER PHE LYS SER GLN SER ASN LYS ASP ASN ALA SEQRES 21 A 544 ILE PHE TRP MET TRP LEU ILE LYS ASN ASN GLU GLU ASP SEQRES 22 A 544 LEU LYS THR LEU SER GLN SER SER SER LEU ASN ILE TYR SEQRES 23 A 544 SER LEU TYR ALA LYS GLU LEU THR ASN THR PRO PHE PRO SEQRES 24 A 544 LYS ILE GLU SER LEU ASN PRO SER LYS LYS LYS ASN ASN SEQRES 25 A 544 PHE ASN MET GLN ASP PRO PHE ALA TRP GLN LYS ILE ASN SEQRES 26 A 544 LYS GLN ILE ARG ASP ALA ASN ALA SER GLN LEU ASP VAL SEQRES 27 A 544 LEU ALA LYS GLU PHE ASP THR GLN GLU THR LEU PRO ILE SEQRES 28 A 544 TYR ALA TYR ILE LEU GLU ARG LYS ASN ASN PHE LYS LYS SEQRES 29 A 544 HIS TYR PHE ILE MET PRO TYR TYR ASP ASN ILE LYS ASP SEQRES 30 A 544 TYR ASN LYS THR ARG GLN ALA LEU ILE LEU ALA ILE ALA SEQRES 31 A 544 ARG GLN GLU SER ARG PHE ILE PRO THR ALA ILE SER VAL SEQRES 32 A 544 SER TYR ALA LEU GLY MET MET GLN PHE MET PRO PHE LEU SEQRES 33 A 544 ALA ASN HIS ILE GLY GLU LYS GLU LEU LYS ILE PRO ASN SEQRES 34 A 544 PHE ASP GLN ASP PHE MET PHE LYS PRO GLU ILE ALA TYR SEQRES 35 A 544 TYR PHE GLY ASN TYR HIS LEU ASN TYR LEU GLU SER ARG SEQRES 36 A 544 LEU LYS SER PRO LEU PHE VAL ALA TYR ALA TYR ASN GLY SEQRES 37 A 544 GLY ILE GLY PHE THR ASN ARG MET LEU ALA ARG ASN ASP SEQRES 38 A 544 MET PHE LYS THR GLY LYS PHE GLU PRO PHE LEU SER MET SEQRES 39 A 544 GLU LEU VAL PRO TYR GLN GLU SER ARG ILE TYR GLY LYS SEQRES 40 A 544 LYS VAL LEU ALA ASN TYR ILE VAL TYR ARG HIS LEU LEU SEQRES 41 A 544 ASN ASP SER ILE LYS ILE SER ASP ILE PHE GLU ASN LEU SEQRES 42 A 544 ILE GLN ASN LYS ALA ASN ASP LEU ASN LYS SER HET ZMB A 601 22 HET CIT A 602 13 HET DMS A 603 4 HET DMS A 604 4 HET DMS A 605 4 HETNAM ZMB METHYL (2S)-3-[(2-ACETAMIDO-2-DEOXY-BETA-D- HETNAM 2 ZMB GLUCOPYRANOSYL)OXY]-2-METHYLPROPANOATE HETNAM CIT CITRIC ACID HETNAM DMS DIMETHYL SULFOXIDE FORMUL 2 ZMB C13 H23 N O8 FORMUL 3 CIT C6 H8 O7 FORMUL 4 DMS 3(C2 H6 O S) FORMUL 7 HOH *272(H2 O) HELIX 1 AA1 SER A 21 LYS A 27 1 7 HELIX 2 AA2 SER A 31 LYS A 44 1 14 HELIX 3 AA3 ASP A 54 ILE A 59 5 6 HELIX 4 AA4 GLY A 64 ILE A 74 1 11 HELIX 5 AA5 ASN A 81 TYR A 90 5 10 HELIX 6 AA6 THR A 94 ALA A 98 5 5 HELIX 7 AA7 ASN A 99 LEU A 107 1 9 HELIX 8 AA8 SER A 109 LEU A 116 1 8 HELIX 9 AA9 ASN A 117 LYS A 129 1 13 HELIX 10 AB1 ARG A 132 ASN A 143 1 12 HELIX 11 AB2 ASP A 146 GLU A 155 1 10 HELIX 12 AB3 ASP A 156 SER A 167 1 12 HELIX 13 AB4 ASN A 175 LEU A 182 1 8 HELIX 14 AB5 PRO A 183 HIS A 185 5 3 HELIX 15 AB6 GLY A 187 LYS A 199 1 13 HELIX 16 AB7 ASN A 201 MET A 208 1 8 HELIX 17 AB8 LEU A 209 ILE A 211 5 3 HELIX 18 AB9 ASN A 212 VAL A 216 5 5 HELIX 19 AC1 SER A 217 TYR A 231 1 15 HELIX 20 AC2 LYS A 233 PHE A 248 1 16 HELIX 21 AC3 SER A 250 ASN A 266 1 17 HELIX 22 AC4 ASN A 267 GLN A 276 1 10 HELIX 23 AC5 ASN A 281 THR A 291 1 11 HELIX 24 AC6 ASP A 314 ALA A 328 1 15 HELIX 25 AC7 ASN A 329 PHE A 340 1 12 HELIX 26 AC8 THR A 345 ASN A 357 1 13 HELIX 27 AC9 TYR A 368 ILE A 372 5 5 HELIX 28 AD1 ASN A 376 ARG A 392 1 17 HELIX 29 AD2 MET A 410 LYS A 420 1 11 HELIX 30 AD3 ASP A 428 PHE A 433 5 6 HELIX 31 AD4 LYS A 434 LYS A 454 1 21 HELIX 32 AD5 SER A 455 GLY A 466 1 12 HELIX 33 AD6 GLY A 466 ARG A 476 1 11 HELIX 34 AD7 PRO A 487 LEU A 493 1 7 HELIX 35 AD8 TYR A 496 LEU A 517 1 22 HELIX 36 AD9 LYS A 522 ASN A 529 1 8 SSBOND 1 CYS A 87 CYS A 102 1555 1555 2.07 CISPEP 1 PRO A 78 TYR A 79 0 -1.25 CISPEP 2 GLU A 486 PRO A 487 0 -0.08 CRYST1 176.757 176.757 176.757 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005657 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005657 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005657 0.00000