HEADER VIRAL PROTEIN 13-MAR-23 8GIA
TITLE CRYSTAL STRUCTURE OF SARS-COV-2 (COVID-19) NSP3 MACRODOMAIN IN COMPLEX
TITLE 2 WITH TFMU-ADPR
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: NON-STRUCTURAL PROTEIN 3;
COMPND 3 CHAIN: C, A;
COMPND 4 SYNONYM: NSP3, PL2-PRO, PAPAIN-LIKE PROTEASE, PAPAIN-LIKE PROTEINASE,
COMPND 5 PL-PRO;
COMPND 6 EC: 3.4.19.121, 3.4.22.-;
COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS
SOURCE 3 2;
SOURCE 4 ORGANISM_TAXID: 2697049;
SOURCE 5 GENE: REP, 1A-1B;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008
KEYWDS MACRODOMAIN, SARS-COV, VIRAL PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR S.D.WALLACE,S.R.BAGDE,J.C.FROMME
REVDAT 3 25-OCT-23 8GIA 1 REMARK
REVDAT 2 31-MAY-23 8GIA 1 JRNL
REVDAT 1 17-MAY-23 8GIA 0
JRNL AUTH A.ANMANGANDLA,S.JANA,K.PENG,S.D.WALLACE,S.R.BAGDE,B.S.DROWN,
JRNL AUTH 2 J.XU,P.J.HERGENROTHER,J.C.FROMME,H.LIN
JRNL TITL A FLUORESCENCE POLARIZATION ASSAY FOR MACRODOMAINS
JRNL TITL 2 FACILITATES THE IDENTIFICATION OF POTENT INHIBITORS OF THE
JRNL TITL 3 SARS-COV-2 MACRODOMAIN.
JRNL REF ACS CHEM.BIOL. V. 18 1200 2023
JRNL REFN ESSN 1554-8937
JRNL PMID 37126856
JRNL DOI 10.1021/ACSCHEMBIO.3C00092
REMARK 2
REMARK 2 RESOLUTION. 1.86 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.20.1_4487
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 68.92
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1
REMARK 3 NUMBER OF REFLECTIONS : 27629
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.211
REMARK 3 R VALUE (WORKING SET) : 0.208
REMARK 3 FREE R VALUE : 0.258
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900
REMARK 3 FREE R VALUE TEST SET COUNT : 1355
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 68.9200 - 4.0000 0.99 2735 156 0.1877 0.2148
REMARK 3 2 4.0000 - 3.1800 1.00 2695 125 0.1792 0.2445
REMARK 3 3 3.1800 - 2.7800 0.99 2612 137 0.2078 0.2434
REMARK 3 4 2.7700 - 2.5200 1.00 2646 133 0.2023 0.2696
REMARK 3 5 2.5200 - 2.3400 0.99 2604 139 0.2230 0.2961
REMARK 3 6 2.3400 - 2.2000 1.00 2615 145 0.2202 0.3068
REMARK 3 7 2.2000 - 2.0900 0.98 2561 148 0.2326 0.2703
REMARK 3 8 2.0900 - 2.0000 0.99 2588 131 0.2558 0.2846
REMARK 3 9 2.0000 - 1.9200 0.99 2633 97 0.3101 0.4235
REMARK 3 10 1.9200 - 1.8600 0.99 2585 144 0.3210 0.3609
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.10
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.293
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.008
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 28.00
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.84
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.005 2691
REMARK 3 ANGLE : 0.728 3678
REMARK 3 CHIRALITY : 0.045 431
REMARK 3 PLANARITY : 0.003 458
REMARK 3 DIHEDRAL : 12.577 934
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 12
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: CHAIN 'C' AND (RESID 4 THROUGH 39 )
REMARK 3 ORIGIN FOR THE GROUP (A): -9.8058 -11.9846 -3.7700
REMARK 3 T TENSOR
REMARK 3 T11: 0.1708 T22: 0.3350
REMARK 3 T33: 0.2960 T12: 0.0176
REMARK 3 T13: 0.0662 T23: -0.0398
REMARK 3 L TENSOR
REMARK 3 L11: 7.7047 L22: 3.3803
REMARK 3 L33: 2.2812 L12: 1.3963
REMARK 3 L13: 0.3663 L23: -0.1385
REMARK 3 S TENSOR
REMARK 3 S11: -0.2248 S12: 0.5458 S13: -0.0981
REMARK 3 S21: -0.3408 S22: 0.1851 S23: -0.3503
REMARK 3 S31: 0.0238 S32: 0.2145 S33: 0.0244
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: CHAIN 'C' AND (RESID 40 THROUGH 47 )
REMARK 3 ORIGIN FOR THE GROUP (A): -31.8309 -13.5577 -0.4001
REMARK 3 T TENSOR
REMARK 3 T11: 0.1566 T22: 0.4628
REMARK 3 T33: 0.3507 T12: 0.0028
REMARK 3 T13: -0.0180 T23: 0.0321
REMARK 3 L TENSOR
REMARK 3 L11: 2.8449 L22: 8.1650
REMARK 3 L33: 5.2861 L12: -4.5564
REMARK 3 L13: 1.6587 L23: -0.7375
REMARK 3 S TENSOR
REMARK 3 S11: -0.0183 S12: 0.4883 S13: -0.2007
REMARK 3 S21: -0.1659 S22: 0.3967 S23: 0.7479
REMARK 3 S31: 0.4097 S32: -0.5424 S33: -0.4233
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: CHAIN 'C' AND (RESID 48 THROUGH 59 )
REMARK 3 ORIGIN FOR THE GROUP (A): -25.5794 -10.2378 -9.8940
REMARK 3 T TENSOR
REMARK 3 T11: 0.1807 T22: 0.5773
REMARK 3 T33: 0.3415 T12: 0.0237
REMARK 3 T13: 0.0454 T23: 0.0258
REMARK 3 L TENSOR
REMARK 3 L11: 6.6785 L22: 4.8506
REMARK 3 L33: 4.3675 L12: 1.6849
REMARK 3 L13: 4.7051 L23: 1.8579
REMARK 3 S TENSOR
REMARK 3 S11: -0.0241 S12: 1.3056 S13: 0.3075
REMARK 3 S21: -0.5765 S22: 0.0137 S23: -0.0260
REMARK 3 S31: -0.3371 S32: -0.2516 S33: -0.0298
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: CHAIN 'C' AND (RESID 60 THROUGH 72 )
REMARK 3 ORIGIN FOR THE GROUP (A): -32.4038 -21.1738 -5.7375
REMARK 3 T TENSOR
REMARK 3 T11: 0.2333 T22: 0.5097
REMARK 3 T33: 0.2772 T12: -0.0793
REMARK 3 T13: 0.0457 T23: -0.0717
REMARK 3 L TENSOR
REMARK 3 L11: 9.6410 L22: 9.6434
REMARK 3 L33: 9.0171 L12: 7.6816
REMARK 3 L13: -8.3926 L23: -7.3191
REMARK 3 S TENSOR
REMARK 3 S11: -0.2835 S12: -0.0295 S13: -0.5290
REMARK 3 S21: -0.1273 S22: -0.2982 S23: -0.0540
REMARK 3 S31: 0.3675 S32: 0.2382 S33: 0.6715
REMARK 3 TLS GROUP : 5
REMARK 3 SELECTION: CHAIN 'C' AND (RESID 73 THROUGH 105 )
REMARK 3 ORIGIN FOR THE GROUP (A): -25.0990 -17.1912 1.9868
REMARK 3 T TENSOR
REMARK 3 T11: 0.1122 T22: 0.2854
REMARK 3 T33: 0.2177 T12: 0.0305
REMARK 3 T13: -0.0297 T23: -0.0169
REMARK 3 L TENSOR
REMARK 3 L11: 4.8945 L22: 3.2186
REMARK 3 L33: 4.7868 L12: 1.1538
REMARK 3 L13: -1.7742 L23: -0.1390
REMARK 3 S TENSOR
REMARK 3 S11: -0.1765 S12: -0.1969 S13: -0.2290
REMARK 3 S21: 0.1495 S22: -0.0105 S23: 0.1221
REMARK 3 S31: 0.3063 S32: -0.5595 S33: 0.1818
REMARK 3 TLS GROUP : 6
REMARK 3 SELECTION: CHAIN 'C' AND (RESID 106 THROUGH 135 )
REMARK 3 ORIGIN FOR THE GROUP (A): -17.9461 -15.1267 7.0888
REMARK 3 T TENSOR
REMARK 3 T11: 0.1135 T22: 0.2711
REMARK 3 T33: 0.2260 T12: -0.0187
REMARK 3 T13: -0.0164 T23: -0.0283
REMARK 3 L TENSOR
REMARK 3 L11: 5.1732 L22: 4.6420
REMARK 3 L33: 4.9898 L12: -0.3136
REMARK 3 L13: 0.1582 L23: -0.9990
REMARK 3 S TENSOR
REMARK 3 S11: -0.0971 S12: -0.4806 S13: 0.0963
REMARK 3 S21: 0.2685 S22: 0.0707 S23: -0.2002
REMARK 3 S31: 0.2239 S32: -0.2637 S33: -0.0179
REMARK 3 TLS GROUP : 7
REMARK 3 SELECTION: CHAIN 'C' AND (RESID 136 THROUGH 157 )
REMARK 3 ORIGIN FOR THE GROUP (A): -11.4921 -11.5840 7.2010
REMARK 3 T TENSOR
REMARK 3 T11: 0.1087 T22: 0.3803
REMARK 3 T33: 0.2763 T12: 0.0230
REMARK 3 T13: -0.0092 T23: -0.0168
REMARK 3 L TENSOR
REMARK 3 L11: 4.0041 L22: 6.9766
REMARK 3 L33: 7.4955 L12: 0.6216
REMARK 3 L13: -0.7732 L23: -2.8138
REMARK 3 S TENSOR
REMARK 3 S11: -0.0230 S12: -0.7610 S13: -0.0475
REMARK 3 S21: 0.3312 S22: -0.2804 S23: -0.2256
REMARK 3 S31: -0.0191 S32: 0.3863 S33: 0.2861
REMARK 3 TLS GROUP : 8
REMARK 3 SELECTION: CHAIN 'C' AND (RESID 158 THROUGH 170 )
REMARK 3 ORIGIN FOR THE GROUP (A): -7.1161 -0.4881 7.1959
REMARK 3 T TENSOR
REMARK 3 T11: 0.3749 T22: 0.3672
REMARK 3 T33: 0.5006 T12: -0.0935
REMARK 3 T13: -0.0220 T23: -0.1120
REMARK 3 L TENSOR
REMARK 3 L11: 3.1538 L22: 8.5045
REMARK 3 L33: 7.0918 L12: -4.5005
REMARK 3 L13: 0.2009 L23: -3.7955
REMARK 3 S TENSOR
REMARK 3 S11: -0.2872 S12: -1.0638 S13: 1.1650
REMARK 3 S21: 0.8712 S22: -0.0347 S23: -0.6873
REMARK 3 S31: -0.2775 S32: 0.1116 S33: 0.4140
REMARK 3 TLS GROUP : 9
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 30 )
REMARK 3 ORIGIN FOR THE GROUP (A): -13.9202 2.1637 35.4626
REMARK 3 T TENSOR
REMARK 3 T11: 0.2372 T22: 0.5518
REMARK 3 T33: 0.3957 T12: 0.0516
REMARK 3 T13: -0.0564 T23: -0.0477
REMARK 3 L TENSOR
REMARK 3 L11: 9.3517 L22: 3.2247
REMARK 3 L33: 4.7522 L12: -0.2285
REMARK 3 L13: -0.0880 L23: -0.4506
REMARK 3 S TENSOR
REMARK 3 S11: -0.2994 S12: -0.9023 S13: 0.1108
REMARK 3 S21: 0.2798 S22: 0.1606 S23: -0.4275
REMARK 3 S31: 0.1089 S32: 0.7612 S33: 0.0862
REMARK 3 TLS GROUP : 10
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 31 THROUGH 105 )
REMARK 3 ORIGIN FOR THE GROUP (A): -32.7439 7.9584 34.1438
REMARK 3 T TENSOR
REMARK 3 T11: 0.1483 T22: 0.2781
REMARK 3 T33: 0.1919 T12: -0.0061
REMARK 3 T13: 0.0229 T23: -0.0128
REMARK 3 L TENSOR
REMARK 3 L11: 4.7868 L22: 4.4989
REMARK 3 L33: 2.9311 L12: -0.1394
REMARK 3 L13: -0.9844 L23: 0.2379
REMARK 3 S TENSOR
REMARK 3 S11: -0.0948 S12: 0.0810 S13: 0.1960
REMARK 3 S21: 0.2351 S22: 0.0662 S23: 0.1322
REMARK 3 S31: -0.0690 S32: -0.2839 S33: 0.0162
REMARK 3 TLS GROUP : 11
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 106 THROUGH 157 )
REMARK 3 ORIGIN FOR THE GROUP (A): -21.5682 4.3934 24.8661
REMARK 3 T TENSOR
REMARK 3 T11: 0.1700 T22: 0.5047
REMARK 3 T33: 0.2960 T12: -0.0304
REMARK 3 T13: 0.0181 T23: -0.0408
REMARK 3 L TENSOR
REMARK 3 L11: 4.3314 L22: 3.4337
REMARK 3 L33: 2.4737 L12: 0.4463
REMARK 3 L13: -0.6577 L23: -0.9933
REMARK 3 S TENSOR
REMARK 3 S11: -0.0947 S12: 0.7511 S13: -0.0761
REMARK 3 S21: -0.1839 S22: 0.0469 S23: -0.1358
REMARK 3 S31: -0.0257 S32: 0.1160 S33: 0.0108
REMARK 3 TLS GROUP : 12
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 158 THROUGH 169 )
REMARK 3 ORIGIN FOR THE GROUP (A): -14.2019 -8.5828 26.1784
REMARK 3 T TENSOR
REMARK 3 T11: 0.3073 T22: 0.5865
REMARK 3 T33: 0.9846 T12: 0.0722
REMARK 3 T13: 0.0576 T23: -0.1972
REMARK 3 L TENSOR
REMARK 3 L11: 8.7699 L22: 0.3637
REMARK 3 L33: 4.0257 L12: 1.0217
REMARK 3 L13: -2.4210 L23: 0.6238
REMARK 3 S TENSOR
REMARK 3 S11: 0.2011 S12: 0.9277 S13: -1.2014
REMARK 3 S21: -0.2035 S22: 0.0192 S23: -0.3825
REMARK 3 S31: 0.5996 S32: 0.5907 S33: -0.0239
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 8GIA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-MAR-23.
REMARK 100 THE DEPOSITION ID IS D_1000272803.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 23-DEC-22
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 8
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : APS
REMARK 200 BEAMLINE : 24-ID-E
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : XDS
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27691
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.860
REMARK 200 RESOLUTION RANGE LOW (A) : 68.920
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5
REMARK 200 DATA REDUNDANCY : 6.800
REMARK 200 R MERGE (I) : 0.18400
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.9000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90
REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1
REMARK 200 DATA REDUNDANCY IN SHELL : 7.00
REMARK 200 R MERGE FOR SHELL (I) : 1.33400
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: PDB ENTRY 6YWL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 41.80
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS-HCL, PH 8, 200 MM SODIUM
REMARK 280 ACETATE, 30% PEG4000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE
REMARK 280 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y,-Z
REMARK 290 3555 X+1/2,Y+1/2,Z
REMARK 290 4555 -X+1/2,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 70.25850
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 18.33400
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 70.25850
REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 18.33400
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1, 2
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: C
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 2
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLY C 1
REMARK 465 GLU C 2
REMARK 465 GLY A 1
REMARK 465 GLU A 2
REMARK 465 GLU A 170
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASN C 59 -9.43 70.90
REMARK 500 HIS C 86 -134.90 57.23
REMARK 500 ASN A 4 54.57 -98.86
REMARK 500 HIS A 86 -134.79 56.52
REMARK 500 SER A 128 -1.59 64.25
REMARK 500 PHE A 168 -72.37 -83.22
REMARK 500
REMARK 500 REMARK: NULL
DBREF 8GIA C 2 170 UNP P0DTD1 R1AB_SARS2 1024 1192
DBREF 8GIA A 2 170 UNP P0DTD1 R1AB_SARS2 1024 1192
SEQADV 8GIA GLY C 1 UNP P0DTD1 EXPRESSION TAG
SEQADV 8GIA GLY A 1 UNP P0DTD1 EXPRESSION TAG
SEQRES 1 C 170 GLY GLU VAL ASN SER PHE SER GLY TYR LEU LYS LEU THR
SEQRES 2 C 170 ASP ASN VAL TYR ILE LYS ASN ALA ASP ILE VAL GLU GLU
SEQRES 3 C 170 ALA LYS LYS VAL LYS PRO THR VAL VAL VAL ASN ALA ALA
SEQRES 4 C 170 ASN VAL TYR LEU LYS HIS GLY GLY GLY VAL ALA GLY ALA
SEQRES 5 C 170 LEU ASN LYS ALA THR ASN ASN ALA MET GLN VAL GLU SER
SEQRES 6 C 170 ASP ASP TYR ILE ALA THR ASN GLY PRO LEU LYS VAL GLY
SEQRES 7 C 170 GLY SER CYS VAL LEU SER GLY HIS ASN LEU ALA LYS HIS
SEQRES 8 C 170 CYS LEU HIS VAL VAL GLY PRO ASN VAL ASN LYS GLY GLU
SEQRES 9 C 170 ASP ILE GLN LEU LEU LYS SER ALA TYR GLU ASN PHE ASN
SEQRES 10 C 170 GLN HIS GLU VAL LEU LEU ALA PRO LEU LEU SER ALA GLY
SEQRES 11 C 170 ILE PHE GLY ALA ASP PRO ILE HIS SER LEU ARG VAL CYS
SEQRES 12 C 170 VAL ASP THR VAL ARG THR ASN VAL TYR LEU ALA VAL PHE
SEQRES 13 C 170 ASP LYS ASN LEU TYR ASP LYS LEU VAL SER SER PHE LEU
SEQRES 14 C 170 GLU
SEQRES 1 A 170 GLY GLU VAL ASN SER PHE SER GLY TYR LEU LYS LEU THR
SEQRES 2 A 170 ASP ASN VAL TYR ILE LYS ASN ALA ASP ILE VAL GLU GLU
SEQRES 3 A 170 ALA LYS LYS VAL LYS PRO THR VAL VAL VAL ASN ALA ALA
SEQRES 4 A 170 ASN VAL TYR LEU LYS HIS GLY GLY GLY VAL ALA GLY ALA
SEQRES 5 A 170 LEU ASN LYS ALA THR ASN ASN ALA MET GLN VAL GLU SER
SEQRES 6 A 170 ASP ASP TYR ILE ALA THR ASN GLY PRO LEU LYS VAL GLY
SEQRES 7 A 170 GLY SER CYS VAL LEU SER GLY HIS ASN LEU ALA LYS HIS
SEQRES 8 A 170 CYS LEU HIS VAL VAL GLY PRO ASN VAL ASN LYS GLY GLU
SEQRES 9 A 170 ASP ILE GLN LEU LEU LYS SER ALA TYR GLU ASN PHE ASN
SEQRES 10 A 170 GLN HIS GLU VAL LEU LEU ALA PRO LEU LEU SER ALA GLY
SEQRES 11 A 170 ILE PHE GLY ALA ASP PRO ILE HIS SER LEU ARG VAL CYS
SEQRES 12 A 170 VAL ASP THR VAL ARG THR ASN VAL TYR LEU ALA VAL PHE
SEQRES 13 A 170 ASP LYS ASN LEU TYR ASP LYS LEU VAL SER SER PHE LEU
SEQRES 14 A 170 GLU
HET ZJ3 C 201 75
HET ZJ3 A 201 75
HETNAM ZJ3 [(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4-
HETNAM 2 ZJ3 DIHYDROXYOXOLAN-2-YL]METHYL [(2R,3S,4R,5R)-3,4-
HETNAM 3 ZJ3 DIHYDROXY-5-{[2-OXO-4-(TRIFLUOROMETHYL)-2H-1-
HETNAM 4 ZJ3 BENZOPYRAN-7-YL]OXY}OXOLAN-2-YL]METHYL DIHYDROGEN
HETNAM 5 ZJ3 DIPHOSPHATE
FORMUL 3 ZJ3 2(C25 H26 F3 N5 O16 P2)
FORMUL 5 HOH *176(H2 O)
HELIX 1 AA1 ASP C 22 LYS C 31 1 10
HELIX 2 AA2 GLY C 47 THR C 57 1 11
HELIX 3 AA3 ASN C 59 GLY C 73 1 15
HELIX 4 AA4 ASN C 99 GLY C 103 5 5
HELIX 5 AA5 GLN C 107 ASN C 115 1 9
HELIX 6 AA6 PHE C 116 HIS C 119 5 4
HELIX 7 AA7 ASP C 135 VAL C 147 1 13
HELIX 8 AA8 ASP C 157 LEU C 169 1 13
HELIX 9 AA9 ASP A 22 LYS A 31 1 10
HELIX 10 AB1 GLY A 47 THR A 57 1 11
HELIX 11 AB2 ASN A 59 GLY A 73 1 15
HELIX 12 AB3 GLN A 107 ASN A 115 1 9
HELIX 13 AB4 PHE A 116 HIS A 119 5 4
HELIX 14 AB5 ASP A 135 VAL A 147 1 13
HELIX 15 AB6 ASP A 157 LEU A 169 1 13
SHEET 1 AA1 4 LEU C 10 LYS C 11 0
SHEET 2 AA1 4 VAL C 16 LYS C 19 -1 O ILE C 18 N LEU C 10
SHEET 3 AA1 4 ASN C 150 ALA C 154 1 O LEU C 153 N TYR C 17
SHEET 4 AA1 4 VAL C 121 ALA C 124 1 N LEU C 122 O TYR C 152
SHEET 1 AA2 3 VAL C 34 ALA C 39 0
SHEET 2 AA2 3 HIS C 91 VAL C 96 1 O VAL C 95 N ALA C 39
SHEET 3 AA2 3 SER C 80 SER C 84 -1 N LEU C 83 O CYS C 92
SHEET 1 AA3 4 LEU A 10 LYS A 11 0
SHEET 2 AA3 4 VAL A 16 LYS A 19 -1 O ILE A 18 N LEU A 10
SHEET 3 AA3 4 ASN A 150 ALA A 154 1 O LEU A 153 N TYR A 17
SHEET 4 AA3 4 VAL A 121 ALA A 124 1 N LEU A 122 O TYR A 152
SHEET 1 AA4 3 VAL A 34 ALA A 39 0
SHEET 2 AA4 3 HIS A 91 VAL A 96 1 O VAL A 95 N ALA A 39
SHEET 3 AA4 3 SER A 80 SER A 84 -1 N LEU A 83 O CYS A 92
CRYST1 140.517 36.668 65.056 90.00 101.21 90.00 C 1 2 1 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.007117 0.000000 0.001410 0.00000
SCALE2 0.000000 0.027272 0.000000 0.00000
SCALE3 0.000000 0.000000 0.015670 0.00000