HEADER IMMUNE SYSTEM,TRANSFERASE/DNA 14-MAR-23 8GIO TITLE STRUCTURE OF TERNARY COMPLEX OF MOUSE CGAS WITH DSDNA AND BOUND ATP: TITLE 2 WITH 10MM MG2+ AND 0.1MM MN2+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLIC GMP-AMP SYNTHASE; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 147-507; COMPND 5 SYNONYM: CGAMP SYNTHASE,CGAS,M-CGAS,2'3'-CGAMP SYNTHASE,MAB-21 COMPND 6 DOMAIN-CONTAINING PROTEIN 1; COMPND 7 EC: 2.7.7.86; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: MOUSE CYCLIC GMP-AMP SYNTHASE CATALYTIC DOMAIN 147- COMPND 10 507; THREE EXTRA RESIDUES AT THE N TERMINUS (G FROM TEV SITE, TG FROM COMPND 11 AGEI SITE). FLEXIBLE RESIDUES IN THE COORDINATE WERE DELETED.; COMPND 12 MOL_ID: 2; COMPND 13 MOLECULE: PALINDROMIC DNA18; COMPND 14 CHAIN: E, F, I, J; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: CGAS, MB21D1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PET28; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: NHMT MCAT WT; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630; SOURCE 14 OTHER_DETAILS: CUSTOM SYNTHESIZED BY IDT KEYWDS TRANSFERASE-DNA COMPLEX, CGAS, ATP AND DIVALENT METAL ION, IMMUNE KEYWDS 2 SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR S.WU,J.SOHN REVDAT 3 29-MAY-24 8GIO 1 JRNL REVDAT 2 22-MAY-24 8GIO 1 JRNL REVDAT 1 17-APR-24 8GIO 0 JRNL AUTH S.WU,S.B.GABELLI,J.SOHN JRNL TITL THE STRUCTURAL BASIS FOR 2'-5'/3'-5'-CGAMP SYNTHESIS BY JRNL TITL 2 CGAS. JRNL REF NAT COMMUN V. 15 4012 2024 JRNL REFN ESSN 2041-1723 JRNL PMID 38740774 JRNL DOI 10.1038/S41467-024-48365-3 REMARK 2 REMARK 2 RESOLUTION. 2.67 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.67 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 31582 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 2895 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.8000 - 7.3200 1.00 2716 123 0.1271 0.1837 REMARK 3 2 7.3200 - 5.8200 1.00 2689 177 0.1844 0.2409 REMARK 3 3 5.8200 - 5.0900 1.00 2702 135 0.1591 0.2096 REMARK 3 4 5.0900 - 4.6300 1.00 2683 165 0.1537 0.2340 REMARK 3 5 4.6300 - 4.3000 1.00 2709 151 0.1465 0.2097 REMARK 3 6 4.3000 - 4.0500 1.00 2699 152 0.1522 0.2018 REMARK 3 7 4.0500 - 3.8400 1.00 2729 137 0.1793 0.2396 REMARK 3 8 3.8400 - 3.6800 1.00 2677 156 0.1824 0.2612 REMARK 3 9 3.6800 - 3.5400 1.00 2748 109 0.1833 0.2367 REMARK 3 10 3.5400 - 3.4100 1.00 2710 139 0.1892 0.2409 REMARK 3 11 3.4100 - 3.3100 1.00 2695 151 0.2156 0.2729 REMARK 3 12 3.3100 - 3.2100 0.99 2717 129 0.1969 0.2895 REMARK 3 13 3.2100 - 3.1300 1.00 2705 152 0.2152 0.2612 REMARK 3 14 3.1300 - 3.0500 1.00 2726 135 0.2082 0.2082 REMARK 3 15 3.0500 - 2.9800 1.00 2681 123 0.2359 0.2505 REMARK 3 16 2.9800 - 2.9200 1.00 2771 105 0.2524 0.3210 REMARK 3 17 2.9200 - 2.8600 1.00 2676 167 0.2650 0.3276 REMARK 3 18 2.8600 - 2.8100 1.00 2716 161 0.2622 0.3293 REMARK 3 19 2.8100 - 2.7600 1.00 2729 114 0.2748 0.3679 REMARK 3 20 2.7600 - 2.7100 1.00 2769 103 0.2782 0.3653 REMARK 3 21 2.7100 - 2.6700 0.86 2282 111 0.2810 0.3144 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 NULL REMARK 3 ANGLE : 1.066 NULL REMARK 3 CHIRALITY : 0.052 1144 REMARK 3 PLANARITY : 0.011 1071 REMARK 3 DIHEDRAL : 23.752 1461 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND ( RESID 148:506 OR RESID 602:602 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.898 -26.770 20.323 REMARK 3 T TENSOR REMARK 3 T11: 0.2739 T22: 0.3016 REMARK 3 T33: 0.3546 T12: 0.0156 REMARK 3 T13: 0.0206 T23: 0.0246 REMARK 3 L TENSOR REMARK 3 L11: 1.3569 L22: 2.0437 REMARK 3 L33: 1.3613 L12: -0.2897 REMARK 3 L13: 0.3918 L23: 0.1080 REMARK 3 S TENSOR REMARK 3 S11: 0.0106 S12: -0.0805 S13: -0.1987 REMARK 3 S21: 0.0336 S22: 0.0258 S23: -0.1585 REMARK 3 S31: 0.1129 S32: 0.0889 S33: -0.0224 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN C AND ( RESID 148:506 OR RESID 602:602 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.232 8.186 18.497 REMARK 3 T TENSOR REMARK 3 T11: 0.3036 T22: 0.3943 REMARK 3 T33: 0.3865 T12: 0.0663 REMARK 3 T13: -0.0557 T23: -0.0395 REMARK 3 L TENSOR REMARK 3 L11: 1.6164 L22: 3.0018 REMARK 3 L33: 1.1934 L12: -1.0548 REMARK 3 L13: -0.3743 L23: 0.5972 REMARK 3 S TENSOR REMARK 3 S11: -0.1189 S12: -0.1971 S13: 0.0691 REMARK 3 S21: -0.0179 S22: 0.0721 S23: 0.3759 REMARK 3 S31: -0.1102 S32: -0.1329 S33: 0.0420 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN E AND RESID 1:18 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.874 -22.966 31.561 REMARK 3 T TENSOR REMARK 3 T11: 0.5670 T22: 0.8499 REMARK 3 T33: 0.5046 T12: -0.1320 REMARK 3 T13: -0.0691 T23: -0.0052 REMARK 3 L TENSOR REMARK 3 L11: 3.1437 L22: 2.6312 REMARK 3 L33: 2.4006 L12: -0.6771 REMARK 3 L13: -1.1571 L23: -1.9834 REMARK 3 S TENSOR REMARK 3 S11: 0.1862 S12: -1.1484 S13: -0.0027 REMARK 3 S21: 0.7794 S22: 0.2922 S23: 0.0251 REMARK 3 S31: -0.1917 S32: -0.1569 S33: -0.4964 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN F AND RESID 1:18 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.617 -23.532 32.447 REMARK 3 T TENSOR REMARK 3 T11: 0.7169 T22: 0.8200 REMARK 3 T33: 0.4377 T12: -0.0941 REMARK 3 T13: 0.0450 T23: 0.0360 REMARK 3 L TENSOR REMARK 3 L11: 2.6909 L22: 3.7864 REMARK 3 L33: 1.4829 L12: -1.1181 REMARK 3 L13: -0.9704 L23: -0.1647 REMARK 3 S TENSOR REMARK 3 S11: 0.3042 S12: -0.9440 S13: 0.2548 REMARK 3 S21: 0.7148 S22: -0.0634 S23: 0.0050 REMARK 3 S31: -0.4648 S32: -0.7019 S33: -0.3925 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN I AND RESID 1:18 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.107 8.624 17.740 REMARK 3 T TENSOR REMARK 3 T11: 0.5563 T22: 0.5302 REMARK 3 T33: 0.5858 T12: -0.0720 REMARK 3 T13: 0.0370 T23: -0.0647 REMARK 3 L TENSOR REMARK 3 L11: 3.6360 L22: 3.2138 REMARK 3 L33: 2.4464 L12: -0.8000 REMARK 3 L13: 1.3799 L23: 0.3387 REMARK 3 S TENSOR REMARK 3 S11: 0.2637 S12: 0.2423 S13: 0.4268 REMARK 3 S21: -0.0683 S22: 0.2482 S23: -0.1089 REMARK 3 S31: -0.4669 S32: 0.5986 S33: -0.5115 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN J AND RESID 1:18 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.463 6.600 18.592 REMARK 3 T TENSOR REMARK 3 T11: 0.5878 T22: 0.5670 REMARK 3 T33: 0.4485 T12: -0.0009 REMARK 3 T13: -0.0721 T23: -0.2067 REMARK 3 L TENSOR REMARK 3 L11: 4.7075 L22: 4.0299 REMARK 3 L33: 1.0130 L12: -0.2245 REMARK 3 L13: -0.7638 L23: 0.0548 REMARK 3 S TENSOR REMARK 3 S11: 0.2682 S12: 0.4229 S13: 0.2692 REMARK 3 S21: -0.2439 S22: 0.2045 S23: -0.2743 REMARK 3 S31: 0.2093 S32: 0.4444 S33: -0.4413 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8GIO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-MAR-23. REMARK 100 THE DEPOSITION ID IS D_1000272961. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0-7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.891 REMARK 200 MONOCHROMATOR : HORIZONTAL BOUNCE SI(111) DOUBLE REMARK 200 CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 20210205 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.7 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31582 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.670 REMARK 200 RESOLUTION RANGE LOW (A) : 28.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.67 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.57300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 11.7.03 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM ACETATE, 32% MPD, WITH REMARK 280 0.1 M BIS-TRIS PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.79700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.96450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.31200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.96450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.79700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.31200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, E, F, I, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 144 REMARK 465 THR A 145 REMARK 465 GLY A 146 REMARK 465 PRO A 147 REMARK 465 PRO A 243 REMARK 465 ARG A 244 REMARK 465 GLY A 245 REMARK 465 LEU A 507 REMARK 465 GLY C 144 REMARK 465 THR C 145 REMARK 465 GLY C 146 REMARK 465 PRO C 147 REMARK 465 LYS C 240 REMARK 465 ARG C 241 REMARK 465 ILE C 242 REMARK 465 PRO C 243 REMARK 465 ARG C 244 REMARK 465 GLY C 245 REMARK 465 ASN C 246 REMARK 465 LEU C 252 REMARK 465 GLU C 253 REMARK 465 GLY C 254 REMARK 465 GLU C 255 REMARK 465 ASN C 351 REMARK 465 ALA C 352 REMARK 465 LYS C 353 REMARK 465 ASP C 354 REMARK 465 GLY C 355 REMARK 465 ASN C 356 REMARK 465 SER C 357 REMARK 465 PHE C 358 REMARK 465 LEU C 507 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT F 6 O3' DT F 6 C3' -0.037 REMARK 500 DT I 12 O3' DT I 12 C3' -0.039 REMARK 500 DC I 14 O3' DC I 14 C3' -0.047 REMARK 500 DC J 14 O3' DC J 14 C3' -0.048 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 301 C - N - CD ANGL. DEV. = -18.9 DEGREES REMARK 500 DC F 8 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 DC I 8 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DC J 14 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 185 -147.98 25.86 REMARK 500 SER A 207 -57.98 72.70 REMARK 500 PRO A 221 -113.83 -67.00 REMARK 500 ARG A 222 91.99 -54.11 REMARK 500 GLU A 255 -26.01 69.83 REMARK 500 PRO A 301 -73.10 19.76 REMARK 500 LYS A 353 40.27 -106.38 REMARK 500 GLN A 359 -72.87 -19.71 REMARK 500 ASP A 434 77.69 -114.90 REMARK 500 MET C 182 -158.66 -66.85 REMARK 500 GLN C 183 -79.20 34.99 REMARK 500 LYS C 184 33.85 -72.81 REMARK 500 ARG C 185 25.45 -145.35 REMARK 500 SER C 207 -51.34 74.42 REMARK 500 ARG C 222 97.80 -25.47 REMARK 500 ASN C 300 -175.06 -51.07 REMARK 500 TRP C 331 -72.43 -116.12 REMARK 500 PHE C 501 70.92 55.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 300 PRO A 301 -118.75 REMARK 500 ARG C 299 ASN C 300 147.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 603 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 211 OE1 REMARK 620 2 ASP A 213 OD2 92.0 REMARK 620 3 ATP A 601 O3G 86.5 143.1 REMARK 620 4 ATP A 601 O2B 154.7 75.6 90.5 REMARK 620 5 ATP A 601 O2A 84.6 69.1 74.1 70.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 604 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 211 OE2 REMARK 620 2 ASP A 213 OD1 77.5 REMARK 620 3 ASP A 307 OD2 71.9 83.2 REMARK 620 4 ATP A 601 O2A 98.3 74.4 157.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 602 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 378 NE2 REMARK 620 2 CYS A 384 SG 112.6 REMARK 620 3 CYS A 385 SG 108.6 126.9 REMARK 620 4 CYS A 392 SG 93.9 100.3 108.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 603 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 211 OE1 REMARK 620 2 ASP C 213 OD2 91.5 REMARK 620 3 ATP C 601 O3G 85.7 145.6 REMARK 620 4 ATP C 601 O2B 152.5 78.5 88.3 REMARK 620 5 ATP C 601 O2A 80.6 67.9 77.9 71.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 604 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 211 OE2 REMARK 620 2 ASP C 213 OD1 91.5 REMARK 620 3 ASP C 307 OD2 68.4 91.0 REMARK 620 4 ATP C 601 O2A 103.7 76.4 165.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 602 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 378 NE2 REMARK 620 2 CYS C 384 SG 111.0 REMARK 620 3 CYS C 385 SG 104.0 129.4 REMARK 620 4 CYS C 392 SG 99.1 99.9 109.5 REMARK 620 N 1 2 3 DBREF 8GIO A 147 507 UNP Q8C6L5 CGAS_MOUSE 147 507 DBREF 8GIO C 147 507 UNP Q8C6L5 CGAS_MOUSE 147 507 DBREF 8GIO E 1 18 PDB 8GIO 8GIO 1 18 DBREF 8GIO F 1 18 PDB 8GIO 8GIO 1 18 DBREF 8GIO I 1 18 PDB 8GIO 8GIO 1 18 DBREF 8GIO J 1 18 PDB 8GIO 8GIO 1 18 SEQADV 8GIO GLY A 144 UNP Q8C6L5 EXPRESSION TAG SEQADV 8GIO THR A 145 UNP Q8C6L5 EXPRESSION TAG SEQADV 8GIO GLY A 146 UNP Q8C6L5 EXPRESSION TAG SEQADV 8GIO GLY C 144 UNP Q8C6L5 EXPRESSION TAG SEQADV 8GIO THR C 145 UNP Q8C6L5 EXPRESSION TAG SEQADV 8GIO GLY C 146 UNP Q8C6L5 EXPRESSION TAG SEQRES 1 A 364 GLY THR GLY PRO ASP LYS LEU LYS LYS VAL LEU ASP LYS SEQRES 2 A 364 LEU ARG LEU LYS ARG LYS ASP ILE SER GLU ALA ALA GLU SEQRES 3 A 364 THR VAL ASN LYS VAL VAL GLU ARG LEU LEU ARG ARG MET SEQRES 4 A 364 GLN LYS ARG GLU SER GLU PHE LYS GLY VAL GLU GLN LEU SEQRES 5 A 364 ASN THR GLY SER TYR TYR GLU HIS VAL LYS ILE SER ALA SEQRES 6 A 364 PRO ASN GLU PHE ASP VAL MET PHE LYS LEU GLU VAL PRO SEQRES 7 A 364 ARG ILE GLU LEU GLN GLU TYR TYR GLU THR GLY ALA PHE SEQRES 8 A 364 TYR LEU VAL LYS PHE LYS ARG ILE PRO ARG GLY ASN PRO SEQRES 9 A 364 LEU SER HIS PHE LEU GLU GLY GLU VAL LEU SER ALA THR SEQRES 10 A 364 LYS MET LEU SER LYS PHE ARG LYS ILE ILE LYS GLU GLU SEQRES 11 A 364 VAL LYS GLU ILE LYS ASP ILE ASP VAL SER VAL GLU LYS SEQRES 12 A 364 GLU LYS PRO GLY SER PRO ALA VAL THR LEU LEU ILE ARG SEQRES 13 A 364 ASN PRO GLU GLU ILE SER VAL ASP ILE ILE LEU ALA LEU SEQRES 14 A 364 GLU SER LYS GLY SER TRP PRO ILE SER THR LYS GLU GLY SEQRES 15 A 364 LEU PRO ILE GLN GLY TRP LEU GLY THR LYS VAL ARG THR SEQRES 16 A 364 ASN LEU ARG ARG GLU PRO PHE TYR LEU VAL PRO LYS ASN SEQRES 17 A 364 ALA LYS ASP GLY ASN SER PHE GLN GLY GLU THR TRP ARG SEQRES 18 A 364 LEU SER PHE SER HIS THR GLU LYS TYR ILE LEU ASN ASN SEQRES 19 A 364 HIS GLY ILE GLU LYS THR CYS CYS GLU SER SER GLY ALA SEQRES 20 A 364 LYS CYS CYS ARG LYS GLU CYS LEU LYS LEU MET LYS TYR SEQRES 21 A 364 LEU LEU GLU GLN LEU LYS LYS GLU PHE GLN GLU LEU ASP SEQRES 22 A 364 ALA PHE CYS SER TYR HIS VAL LYS THR ALA ILE PHE HIS SEQRES 23 A 364 MET TRP THR GLN ASP PRO GLN ASP SER GLN TRP ASP PRO SEQRES 24 A 364 ARG ASN LEU SER SER CYS PHE ASP LYS LEU LEU ALA PHE SEQRES 25 A 364 PHE LEU GLU CYS LEU ARG THR GLU LYS LEU ASP HIS TYR SEQRES 26 A 364 PHE ILE PRO LYS PHE ASN LEU PHE SER GLN GLU LEU ILE SEQRES 27 A 364 ASP ARG LYS SER LYS GLU PHE LEU SER LYS LYS ILE GLU SEQRES 28 A 364 TYR GLU ARG ASN ASN GLY PHE PRO ILE PHE ASP LYS LEU SEQRES 1 C 364 GLY THR GLY PRO ASP LYS LEU LYS LYS VAL LEU ASP LYS SEQRES 2 C 364 LEU ARG LEU LYS ARG LYS ASP ILE SER GLU ALA ALA GLU SEQRES 3 C 364 THR VAL ASN LYS VAL VAL GLU ARG LEU LEU ARG ARG MET SEQRES 4 C 364 GLN LYS ARG GLU SER GLU PHE LYS GLY VAL GLU GLN LEU SEQRES 5 C 364 ASN THR GLY SER TYR TYR GLU HIS VAL LYS ILE SER ALA SEQRES 6 C 364 PRO ASN GLU PHE ASP VAL MET PHE LYS LEU GLU VAL PRO SEQRES 7 C 364 ARG ILE GLU LEU GLN GLU TYR TYR GLU THR GLY ALA PHE SEQRES 8 C 364 TYR LEU VAL LYS PHE LYS ARG ILE PRO ARG GLY ASN PRO SEQRES 9 C 364 LEU SER HIS PHE LEU GLU GLY GLU VAL LEU SER ALA THR SEQRES 10 C 364 LYS MET LEU SER LYS PHE ARG LYS ILE ILE LYS GLU GLU SEQRES 11 C 364 VAL LYS GLU ILE LYS ASP ILE ASP VAL SER VAL GLU LYS SEQRES 12 C 364 GLU LYS PRO GLY SER PRO ALA VAL THR LEU LEU ILE ARG SEQRES 13 C 364 ASN PRO GLU GLU ILE SER VAL ASP ILE ILE LEU ALA LEU SEQRES 14 C 364 GLU SER LYS GLY SER TRP PRO ILE SER THR LYS GLU GLY SEQRES 15 C 364 LEU PRO ILE GLN GLY TRP LEU GLY THR LYS VAL ARG THR SEQRES 16 C 364 ASN LEU ARG ARG GLU PRO PHE TYR LEU VAL PRO LYS ASN SEQRES 17 C 364 ALA LYS ASP GLY ASN SER PHE GLN GLY GLU THR TRP ARG SEQRES 18 C 364 LEU SER PHE SER HIS THR GLU LYS TYR ILE LEU ASN ASN SEQRES 19 C 364 HIS GLY ILE GLU LYS THR CYS CYS GLU SER SER GLY ALA SEQRES 20 C 364 LYS CYS CYS ARG LYS GLU CYS LEU LYS LEU MET LYS TYR SEQRES 21 C 364 LEU LEU GLU GLN LEU LYS LYS GLU PHE GLN GLU LEU ASP SEQRES 22 C 364 ALA PHE CYS SER TYR HIS VAL LYS THR ALA ILE PHE HIS SEQRES 23 C 364 MET TRP THR GLN ASP PRO GLN ASP SER GLN TRP ASP PRO SEQRES 24 C 364 ARG ASN LEU SER SER CYS PHE ASP LYS LEU LEU ALA PHE SEQRES 25 C 364 PHE LEU GLU CYS LEU ARG THR GLU LYS LEU ASP HIS TYR SEQRES 26 C 364 PHE ILE PRO LYS PHE ASN LEU PHE SER GLN GLU LEU ILE SEQRES 27 C 364 ASP ARG LYS SER LYS GLU PHE LEU SER LYS LYS ILE GLU SEQRES 28 C 364 TYR GLU ARG ASN ASN GLY PHE PRO ILE PHE ASP LYS LEU SEQRES 1 E 18 DA DT DC DT DG DT DA DC DA DT DG DT DA SEQRES 2 E 18 DC DA DG DA DT SEQRES 1 F 18 DA DT DC DT DG DT DA DC DA DT DG DT DA SEQRES 2 F 18 DC DA DG DA DT SEQRES 1 I 18 DA DT DC DT DG DT DA DC DA DT DG DT DA SEQRES 2 I 18 DC DA DG DA DT SEQRES 1 J 18 DA DT DC DT DG DT DA DC DA DT DG DT DA SEQRES 2 J 18 DC DA DG DA DT HET ATP A 601 31 HET ZN A 602 1 HET MN A 603 1 HET MN A 604 1 HET ATP C 601 31 HET ZN C 602 1 HET MN C 603 1 HET MN C 604 1 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM ZN ZINC ION HETNAM MN MANGANESE (II) ION FORMUL 7 ATP 2(C10 H16 N5 O13 P3) FORMUL 8 ZN 2(ZN 2+) FORMUL 9 MN 4(MN 2+) FORMUL 15 HOH *25(H2 O) HELIX 1 AA1 ASP A 148 ARG A 158 1 11 HELIX 2 AA2 LYS A 160 GLN A 183 1 24 HELIX 3 AA3 ASN A 246 HIS A 250 5 5 HELIX 4 AA4 SER A 258 GLU A 276 1 19 HELIX 5 AA5 PRO A 319 LYS A 323 5 5 HELIX 6 AA6 GLY A 333 ARG A 342 1 10 HELIX 7 AA7 PHE A 358 GLU A 361 5 4 HELIX 8 AA8 PHE A 367 ASN A 376 1 10 HELIX 9 AA9 CYS A 393 PHE A 412 1 20 HELIX 10 AB1 GLN A 413 ASP A 416 5 4 HELIX 11 AB2 CYS A 419 ASP A 434 1 16 HELIX 12 AB3 GLN A 436 ARG A 443 5 8 HELIX 13 AB4 ASN A 444 GLU A 463 1 20 HELIX 14 AB5 ASP A 482 ASN A 498 1 17 HELIX 15 AB6 PHE A 501 LYS A 506 5 6 HELIX 16 AB7 LYS C 149 ARG C 158 1 10 HELIX 17 AB8 LYS C 160 MET C 182 1 23 HELIX 18 AB9 PRO C 247 PHE C 251 5 5 HELIX 19 AC1 SER C 258 GLU C 276 1 19 HELIX 20 AC2 PRO C 319 LYS C 323 5 5 HELIX 21 AC3 GLY C 333 GLU C 343 1 11 HELIX 22 AC4 PHE C 367 ASN C 377 1 11 HELIX 23 AC5 CYS C 393 PHE C 412 1 20 HELIX 24 AC6 GLN C 413 ASP C 416 5 4 HELIX 25 AC7 CYS C 419 ASP C 434 1 16 HELIX 26 AC8 GLN C 436 ARG C 443 5 8 HELIX 27 AC9 ASN C 444 THR C 462 1 19 HELIX 28 AD1 ASP C 482 ASN C 498 1 17 HELIX 29 AD2 ASN C 499 GLY C 500 5 2 HELIX 30 AD3 PHE C 501 LYS C 506 5 6 SHEET 1 AA1 7 GLU A 193 THR A 197 0 SHEET 2 AA1 7 GLU A 211 GLU A 219 -1 O LYS A 217 N GLU A 193 SHEET 3 AA1 7 GLU A 303 SER A 314 1 O ILE A 309 N PHE A 216 SHEET 4 AA1 7 PHE A 345 PRO A 349 -1 O LEU A 347 N LEU A 312 SHEET 5 AA1 7 TRP A 363 SER A 366 -1 O ARG A 364 N VAL A 348 SHEET 6 AA1 7 PHE A 234 PHE A 239 -1 N TYR A 235 O TRP A 363 SHEET 7 AA1 7 ILE A 223 GLU A 227 -1 N GLN A 226 O LEU A 236 SHEET 1 AA2 5 GLU A 193 THR A 197 0 SHEET 2 AA2 5 GLU A 211 GLU A 219 -1 O LYS A 217 N GLU A 193 SHEET 3 AA2 5 GLU A 303 SER A 314 1 O ILE A 309 N PHE A 216 SHEET 4 AA2 5 ALA A 293 ARG A 299 -1 N ILE A 298 O ILE A 304 SHEET 5 AA2 5 VAL A 282 VAL A 284 -1 N SER A 283 O LEU A 297 SHEET 1 AA3 2 LEU A 252 GLU A 253 0 SHEET 2 AA3 2 VAL A 256 LEU A 257 -1 O VAL A 256 N GLU A 253 SHEET 1 AA4 7 GLU C 193 THR C 197 0 SHEET 2 AA4 7 GLU C 211 GLU C 219 -1 O MET C 215 N LEU C 195 SHEET 3 AA4 7 GLU C 303 SER C 314 1 O ILE C 309 N VAL C 214 SHEET 4 AA4 7 PHE C 345 PRO C 349 -1 O PHE C 345 N SER C 314 SHEET 5 AA4 7 TRP C 363 SER C 366 -1 O ARG C 364 N VAL C 348 SHEET 6 AA4 7 PHE C 234 LYS C 238 -1 N TYR C 235 O TRP C 363 SHEET 7 AA4 7 GLU C 224 GLU C 227 -1 N GLU C 224 O LYS C 238 SHEET 1 AA5 5 GLU C 193 THR C 197 0 SHEET 2 AA5 5 GLU C 211 GLU C 219 -1 O MET C 215 N LEU C 195 SHEET 3 AA5 5 GLU C 303 SER C 314 1 O ILE C 309 N VAL C 214 SHEET 4 AA5 5 ALA C 293 ARG C 299 -1 N LEU C 296 O VAL C 306 SHEET 5 AA5 5 VAL C 282 VAL C 284 -1 N SER C 283 O LEU C 297 LINK OE1 GLU A 211 MN MN A 603 1555 1555 2.34 LINK OE2 GLU A 211 MN MN A 604 1555 1555 2.45 LINK OD2 ASP A 213 MN MN A 603 1555 1555 2.55 LINK OD1 ASP A 213 MN MN A 604 1555 1555 2.47 LINK OD2 ASP A 307 MN MN A 604 1555 1555 2.26 LINK NE2 HIS A 378 ZN ZN A 602 1555 1555 2.02 LINK SG CYS A 384 ZN ZN A 602 1555 1555 2.31 LINK SG CYS A 385 ZN ZN A 602 1555 1555 2.30 LINK SG CYS A 392 ZN ZN A 602 1555 1555 2.33 LINK O3G ATP A 601 MN MN A 603 1555 1555 2.24 LINK O2B ATP A 601 MN MN A 603 1555 1555 2.44 LINK O2A ATP A 601 MN MN A 603 1555 1555 2.57 LINK O2A ATP A 601 MN MN A 604 1555 1555 2.49 LINK OE1 GLU C 211 MN MN C 603 1555 1555 2.41 LINK OE2 GLU C 211 MN MN C 604 1555 1555 2.44 LINK OD2 ASP C 213 MN MN C 603 1555 1555 2.31 LINK OD1 ASP C 213 MN MN C 604 1555 1555 2.32 LINK OD2 ASP C 307 MN MN C 604 1555 1555 2.26 LINK NE2 HIS C 378 ZN ZN C 602 1555 1555 2.14 LINK SG CYS C 384 ZN ZN C 602 1555 1555 2.33 LINK SG CYS C 385 ZN ZN C 602 1555 1555 2.27 LINK SG CYS C 392 ZN ZN C 602 1555 1555 2.35 LINK O3G ATP C 601 MN MN C 603 1555 1555 2.42 LINK O2B ATP C 601 MN MN C 603 1555 1555 2.33 LINK O2A ATP C 601 MN MN C 603 1555 1555 2.62 LINK O2A ATP C 601 MN MN C 604 1555 1555 2.44 CRYST1 77.594 98.624 141.929 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012888 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010140 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007046 0.00000