HEADER IMMUNE SYSTEM 19-MAR-23 8GKL TITLE CRYSTAL STRUCTURE OF THE HUMANIZED MUC16 SPECIFIC ANTIBODY HUAR9.6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MUCIN-16; COMPND 3 CHAIN: E; COMPND 4 FRAGMENT: SEA5 DOMAIN, RESIDUES 12695-12821; COMPND 5 SYNONYM: MUC-16,OVARIAN CANCER-RELATED TUMOR MARKER CA125,CA-125, COMPND 6 OVARIAN CARCINOMA ANTIGEN CA125; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: MUC16 ANTIBODY AR9.6 FAB LIGHT CHAIN; COMPND 10 CHAIN: L; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: MUC16 ANTIBODY AR9.6 FAB HEAVY CHAIN; COMPND 14 CHAIN: H; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MUC16, CA125; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 10 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 11 ORGANISM_TAXID: 10090; SOURCE 12 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 13 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 17 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 18 ORGANISM_TAXID: 10090; SOURCE 19 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 20 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 10029 KEYWDS CA125, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR C.L.BROOKS,E.N.AGUILAR REVDAT 1 20-MAR-24 8GKL 0 JRNL AUTH C.L.BROOKS,E.N.AGUILAR JRNL TITL CRYSTAL STRUCTURE OF THE MUC16 SPECIFIC ANTIBODY AR9.6 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.74 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 19173 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 959 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 10.0000 - 4.9700 1.00 2773 147 0.2046 0.2144 REMARK 3 2 4.9700 - 3.9500 1.00 2659 139 0.1582 0.2422 REMARK 3 3 3.9500 - 3.4500 1.00 2572 136 0.1936 0.2583 REMARK 3 4 3.4500 - 3.1300 1.00 2600 137 0.2265 0.2733 REMARK 3 5 3.1300 - 2.9100 0.99 2615 137 0.2624 0.3236 REMARK 3 6 2.9100 - 2.7400 0.99 2489 131 0.3336 0.3861 REMARK 3 7 2.7400 - 2.6000 0.97 2506 132 0.3912 0.4865 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.451 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.032 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 51.23 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 4204 REMARK 3 ANGLE : 0.474 5734 REMARK 3 CHIRALITY : 0.042 645 REMARK 3 PLANARITY : 0.004 736 REMARK 3 DIHEDRAL : 3.793 579 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 36 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.4643 20.4169 51.4769 REMARK 3 T TENSOR REMARK 3 T11: 0.2285 T22: 0.2412 REMARK 3 T33: 0.3952 T12: 0.0079 REMARK 3 T13: 0.0668 T23: 0.0704 REMARK 3 L TENSOR REMARK 3 L11: 4.5766 L22: 3.7804 REMARK 3 L33: 8.7566 L12: -0.9316 REMARK 3 L13: -3.6892 L23: 3.9024 REMARK 3 S TENSOR REMARK 3 S11: 0.3312 S12: 0.4122 S13: 0.3331 REMARK 3 S21: -0.4204 S22: -0.2293 S23: 0.2561 REMARK 3 S31: -0.7932 S32: 0.0754 S33: -0.1520 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 54 THROUGH 80 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.3430 14.7308 54.2548 REMARK 3 T TENSOR REMARK 3 T11: 0.1949 T22: 0.4525 REMARK 3 T33: 0.4181 T12: 0.0412 REMARK 3 T13: 0.0441 T23: 0.0194 REMARK 3 L TENSOR REMARK 3 L11: 4.1260 L22: 5.5569 REMARK 3 L33: 7.2447 L12: 0.5540 REMARK 3 L13: -1.3115 L23: -2.6695 REMARK 3 S TENSOR REMARK 3 S11: 0.2446 S12: -0.0439 S13: 0.3897 REMARK 3 S21: 0.1834 S22: 0.1585 S23: 0.3746 REMARK 3 S31: 0.1089 S32: 0.0869 S33: -0.3460 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 81 THROUGH 123 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.2683 23.1673 53.0742 REMARK 3 T TENSOR REMARK 3 T11: 0.3457 T22: 0.3190 REMARK 3 T33: 0.4718 T12: -0.0706 REMARK 3 T13: 0.1207 T23: -0.0492 REMARK 3 L TENSOR REMARK 3 L11: 0.9868 L22: 4.6028 REMARK 3 L33: 4.6372 L12: -1.3928 REMARK 3 L13: -1.9561 L23: 1.2902 REMARK 3 S TENSOR REMARK 3 S11: 0.3481 S12: -0.0159 S13: 0.5416 REMARK 3 S21: 0.0979 S22: -0.1736 S23: 0.0712 REMARK 3 S31: -0.6562 S32: 0.0206 S33: -0.0616 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 124 THROUGH 159 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.7810 28.7048 43.4704 REMARK 3 T TENSOR REMARK 3 T11: 0.4649 T22: 0.4385 REMARK 3 T33: 0.5284 T12: 0.0745 REMARK 3 T13: 0.1786 T23: 0.1704 REMARK 3 L TENSOR REMARK 3 L11: 5.4243 L22: 7.4840 REMARK 3 L33: 3.9975 L12: -2.1812 REMARK 3 L13: -1.1665 L23: 0.2810 REMARK 3 S TENSOR REMARK 3 S11: 0.6819 S12: 0.8094 S13: 1.0024 REMARK 3 S21: -0.2195 S22: -0.2138 S23: -0.3576 REMARK 3 S31: -0.8904 S32: -0.2581 S33: -0.4691 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 1 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.5348 -5.2538 41.0882 REMARK 3 T TENSOR REMARK 3 T11: 0.3637 T22: 0.3355 REMARK 3 T33: 0.2845 T12: 0.0209 REMARK 3 T13: 0.0264 T23: 0.0467 REMARK 3 L TENSOR REMARK 3 L11: 2.5916 L22: 4.3268 REMARK 3 L33: 2.3490 L12: -0.2036 REMARK 3 L13: -1.2679 L23: -0.0589 REMARK 3 S TENSOR REMARK 3 S11: -0.2107 S12: -0.0251 S13: -0.1573 REMARK 3 S21: -0.3768 S22: 0.0941 S23: 0.1387 REMARK 3 S31: 0.6172 S32: 0.1763 S33: 0.1014 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 118 THROUGH 216 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.9146 -18.9704 12.6266 REMARK 3 T TENSOR REMARK 3 T11: 0.5670 T22: 0.6116 REMARK 3 T33: 0.4866 T12: 0.0741 REMARK 3 T13: 0.1446 T23: -0.0759 REMARK 3 L TENSOR REMARK 3 L11: 3.9198 L22: 3.1206 REMARK 3 L33: 5.7008 L12: 0.8793 REMARK 3 L13: -2.6393 L23: -0.9124 REMARK 3 S TENSOR REMARK 3 S11: -0.4632 S12: -0.1872 S13: -0.2739 REMARK 3 S21: 0.2784 S22: 0.2058 S23: -0.1133 REMARK 3 S31: 0.7180 S32: 0.3564 S33: 0.2918 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 2 THROUGH 39 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.1382 13.2459 24.6844 REMARK 3 T TENSOR REMARK 3 T11: 0.4545 T22: 0.3777 REMARK 3 T33: 0.3449 T12: 0.0604 REMARK 3 T13: -0.0021 T23: 0.0662 REMARK 3 L TENSOR REMARK 3 L11: 5.7794 L22: 1.6020 REMARK 3 L33: 3.0819 L12: 0.7734 REMARK 3 L13: -0.8030 L23: 0.1262 REMARK 3 S TENSOR REMARK 3 S11: -0.3997 S12: 0.4641 S13: -0.0815 REMARK 3 S21: -0.5431 S22: 0.2335 S23: 0.0556 REMARK 3 S31: -0.0043 S32: -0.1110 S33: 0.1147 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 40 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.5917 17.3465 31.3972 REMARK 3 T TENSOR REMARK 3 T11: 0.3425 T22: 0.2862 REMARK 3 T33: 0.2804 T12: 0.0452 REMARK 3 T13: 0.0610 T23: 0.0406 REMARK 3 L TENSOR REMARK 3 L11: 6.0683 L22: 3.6704 REMARK 3 L33: 6.2146 L12: 0.5948 REMARK 3 L13: -0.5435 L23: -0.0124 REMARK 3 S TENSOR REMARK 3 S11: 0.0510 S12: 0.1248 S13: 0.2747 REMARK 3 S21: -0.4014 S22: -0.0585 S23: -0.1564 REMARK 3 S31: -0.2450 S32: 0.3724 S33: 0.0084 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 84 THROUGH 136 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.0181 6.1251 24.7965 REMARK 3 T TENSOR REMARK 3 T11: 0.3829 T22: 0.4549 REMARK 3 T33: 0.3873 T12: 0.0520 REMARK 3 T13: -0.0249 T23: 0.0974 REMARK 3 L TENSOR REMARK 3 L11: 1.4286 L22: 0.4087 REMARK 3 L33: 2.5982 L12: -0.2289 REMARK 3 L13: -1.8393 L23: 0.9499 REMARK 3 S TENSOR REMARK 3 S11: 0.0860 S12: 0.2287 S13: -0.0854 REMARK 3 S21: -0.1383 S22: -0.0914 S23: 0.1702 REMARK 3 S31: -0.1640 S32: -0.0999 S33: -0.0204 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 146 THROUGH 193 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.0442 -7.6067 11.8556 REMARK 3 T TENSOR REMARK 3 T11: 0.3819 T22: 0.6236 REMARK 3 T33: 0.3819 T12: -0.0382 REMARK 3 T13: 0.0945 T23: -0.0521 REMARK 3 L TENSOR REMARK 3 L11: 1.2053 L22: 2.4681 REMARK 3 L33: 3.5379 L12: -0.8375 REMARK 3 L13: -1.7378 L23: 1.0315 REMARK 3 S TENSOR REMARK 3 S11: -0.1746 S12: 0.1154 S13: -0.5682 REMARK 3 S21: 0.2730 S22: -0.0017 S23: -0.0719 REMARK 3 S31: 0.2376 S32: -0.4717 S33: 0.2043 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 194 THROUGH 223 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.0787 -9.6927 2.0748 REMARK 3 T TENSOR REMARK 3 T11: 0.4811 T22: 0.9652 REMARK 3 T33: 0.4295 T12: -0.1236 REMARK 3 T13: 0.0379 T23: -0.1147 REMARK 3 L TENSOR REMARK 3 L11: 2.4739 L22: 1.2774 REMARK 3 L33: 5.0013 L12: -0.8450 REMARK 3 L13: -1.0091 L23: 1.0653 REMARK 3 S TENSOR REMARK 3 S11: 0.1507 S12: 0.4320 S13: -0.2190 REMARK 3 S21: -0.4627 S22: -0.1178 S23: -0.1072 REMARK 3 S31: 0.3061 S32: -1.0694 S33: 0.0350 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8GKL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAR-23. REMARK 100 THE DEPOSITION ID IS D_1000273088. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JAN-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.521 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 212625 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 42.740 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 11.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M PCTP PH 4.0 25% PEG 1500, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 117.71500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 117.71500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 20.73500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 62.18000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 20.73500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 62.18000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 117.71500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 20.73500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 62.18000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 117.71500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 20.73500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 62.18000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY E 35 REMARK 465 LEU E 115 REMARK 465 ASP E 116 REMARK 465 PRO E 117 REMARK 465 LYS E 118 REMARK 465 SER E 119 REMARK 465 PRO E 120 REMARK 465 GLY E 121 REMARK 465 VAL E 122 REMARK 465 THR E 160 REMARK 465 SER E 161 REMARK 465 THR L 206 REMARK 465 SER L 207 REMARK 465 GLU L 217 REMARK 465 CYS L 218 REMARK 465 GLU H 1 REMARK 465 GLY H 137 REMARK 465 SER H 138 REMARK 465 ALA H 139 REMARK 465 ALA H 140 REMARK 465 GLN H 141 REMARK 465 THR H 142 REMARK 465 ASN H 143 REMARK 465 SER H 144 REMARK 465 MET H 145 REMARK 465 ASP H 224 REMARK 465 CYS H 225 REMARK 465 GLY H 226 REMARK 465 SER H 227 REMARK 465 HIS H 228 REMARK 465 HIS H 229 REMARK 465 HIS H 230 REMARK 465 HIS H 231 REMARK 465 HIS H 232 REMARK 465 HIS H 233 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS E 63 CG CD CE NZ REMARK 470 GLN E 159 CG CD OE1 NE2 REMARK 470 ARG L 18 CG CD NE CZ NH1 NH2 REMARK 470 LEU L 51 CG CD1 CD2 REMARK 470 ARG L 65 CG CD NE CZ NH1 NH2 REMARK 470 GLU L 109 CG CD OE1 OE2 REMARK 470 ILE L 110 CG1 CG2 CD1 REMARK 470 LYS L 146 CG CD CE NZ REMARK 470 LYS L 151 CG CD CE NZ REMARK 470 LYS L 153 CG CD CE NZ REMARK 470 GLU L 158 CG CD OE1 OE2 REMARK 470 GLN L 160 CG CD OE1 NE2 REMARK 470 SER L 172 OG REMARK 470 LYS L 173 CG CD CE NZ REMARK 470 GLU L 199 CG CD OE1 OE2 REMARK 470 LYS L 203 CG CD CE NZ REMARK 470 THR L 204 OG1 CG2 REMARK 470 ASN L 216 CG OD1 ND2 REMARK 470 GLU H 42 CG CD OE1 OE2 REMARK 470 ARG H 87 CG CD NE CZ NH1 NH2 REMARK 470 GLU H 89 CG CD OE1 OE2 REMARK 470 LYS H 125 CG CD CE NZ REMARK 470 LEU H 148 CG CD1 CD2 REMARK 470 ARG H 223 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS E 139 -49.85 -130.30 REMARK 500 LEU E 141 89.42 -150.87 REMARK 500 TYR L 32 11.93 59.70 REMARK 500 ALA L 55 -48.82 68.76 REMARK 500 SER L 56 44.48 -140.82 REMARK 500 ALA L 88 -174.36 -170.78 REMARK 500 ASN L 142 80.86 57.74 REMARK 500 ASN L 194 -68.32 -120.26 REMARK 500 TYR H 101 -76.36 -78.67 REMARK 500 THR H 197 -73.89 -71.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH E 228 DISTANCE = 6.47 ANGSTROMS REMARK 525 HOH E 229 DISTANCE = 7.24 ANGSTROMS REMARK 525 HOH E 230 DISTANCE = 8.51 ANGSTROMS REMARK 525 HOH E 231 DISTANCE = 8.67 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8GKJ RELATED DB: PDB REMARK 900 SAME ANTIBODY IN COMPLEX WITH ANTIGEN REMARK 900 RELATED ID: 8GKK RELATED DB: PDB REMARK 900 MURINE VERSION OF THE SAME ANTIBODY IN COMPLEX WITH ANTIGEN DBREF 8GKL E 35 161 UNP Q8WXI7 MUC16_HUMAN 12695 12821 DBREF 8GKL L 1 218 PDB 8GKL 8GKL 1 218 DBREF 8GKL H 1 233 PDB 8GKL 8GKL 1 233 SEQRES 1 E 127 GLY PRO LEU LEU VAL PRO PHE THR LEU ASN PHE THR ILE SEQRES 2 E 127 THR ASN LEU LYS TYR GLU GLU ASP MET HIS CYS PRO GLY SEQRES 3 E 127 SER ARG LYS PHE ASN THR THR GLU ARG VAL LEU GLN SER SEQRES 4 E 127 LEU LEU GLY PRO MET PHE LYS ASN THR SER VAL GLY PRO SEQRES 5 E 127 LEU TYR SER GLY CYS ARG LEU THR LEU LEU ARG SER GLU SEQRES 6 E 127 LYS ASP GLY ALA ALA THR GLY VAL ASP ALA ILE CYS THR SEQRES 7 E 127 HIS ARG LEU ASP PRO LYS SER PRO GLY VAL ASP ARG GLU SEQRES 8 E 127 GLN LEU TYR TRP GLU LEU SER GLN LEU THR ASN GLY ILE SEQRES 9 E 127 LYS GLU LEU GLY PRO TYR THR LEU ASP ARG ASN SER LEU SEQRES 10 E 127 TYR VAL ASN GLY PHE THR HIS GLN THR SER SEQRES 1 L 218 ASP ILE VAL LEU THR GLN SER PRO ALA SER LEU ALA VAL SEQRES 2 L 218 SER LEU GLY GLN ARG ALA THR ILE SER CYS ARG ALA SER SEQRES 3 L 218 GLU SER VAL ASP ASN TYR GLY ILE SER PHE MET ASN TRP SEQRES 4 L 218 PHE GLN GLN LYS PRO GLY HIS PRO PRO LYS LEU LEU ILE SEQRES 5 L 218 TYR GLY ALA SER ASN GLN GLY SER GLY VAL PRO ALA ARG SEQRES 6 L 218 PHE SER GLY SER GLY SER GLY THR ASP PHE SER LEU ASN SEQRES 7 L 218 ILE HIS PRO MET GLU GLU ASP ASP ALA ALA MET TYR PHE SEQRES 8 L 218 CYS GLN GLN THR LYS GLU VAL PRO TRP THR PHE GLY GLY SEQRES 9 L 218 GLY THR LYS VAL GLU ILE LYS ARG ALA ASP ALA ALA PRO SEQRES 10 L 218 THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU THR SEQRES 11 L 218 SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN PHE SEQRES 12 L 218 TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP GLY SEQRES 13 L 218 SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP THR ASP SEQRES 14 L 218 GLN ASP SER LYS ASP SER THR TYR SER MET SER SER THR SEQRES 15 L 218 LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SER SEQRES 16 L 218 TYR THR CYS GLU ALA THR HIS LYS THR SER THR SER PRO SEQRES 17 L 218 ILE VAL LYS SER PHE ASN ARG ASN GLU CYS SEQRES 1 H 233 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 H 233 PRO GLY GLY SER ARG LYS LEU SER CYS ALA ALA SER GLY SEQRES 3 H 233 PHE THR PHE SER THR PHE GLY MET HIS TRP VAL ARG GLN SEQRES 4 H 233 ALA PRO GLU LYS GLY LEU GLU TRP VAL ALA TYR ILE SER SEQRES 5 H 233 SER GLY SER SER THR ILE TYR TYR GLY ASP THR LEU GLN SEQRES 6 H 233 GLY ARG PHE ILE ILE SER ARG ASP ASN PRO LYS ASN THR SEQRES 7 H 233 LEU PHE LEU GLN MET THR SER LEU ARG SER GLU ASP THR SEQRES 8 H 233 ALA MET TYR TYR CYS ALA ARG SER GLY TYR ASP TYR ASP SEQRES 9 H 233 PRO ILE TYR TYR ALA LEU ASP TYR TRP GLY GLN GLY THR SEQRES 10 H 233 SER VAL THR VAL SER SER ALA LYS THR THR PRO PRO SER SEQRES 11 H 233 VAL TYR PRO LEU ALA PRO GLY SER ALA ALA GLN THR ASN SEQRES 12 H 233 SER MET VAL THR LEU GLY CYS LEU VAL LYS GLY TYR PHE SEQRES 13 H 233 PRO GLU PRO VAL THR VAL THR TRP ASN SER GLY SER LEU SEQRES 14 H 233 SER SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SEQRES 15 H 233 ASP LEU TYR THR LEU SER SER SER VAL THR VAL PRO SER SEQRES 16 H 233 SER THR TRP PRO SER GLU THR VAL THR CYS ASN VAL ALA SEQRES 17 H 233 HIS PRO ALA SER SER THR LYS VAL ASP LYS LYS ILE VAL SEQRES 18 H 233 PRO ARG ASP CYS GLY SER HIS HIS HIS HIS HIS HIS FORMUL 4 HOH *124(H2 O) HELIX 1 AA1 GLU E 53 HIS E 57 5 5 HELIX 2 AA2 SER E 61 ASN E 81 1 21 HELIX 3 AA3 ARG E 124 THR E 135 1 12 HELIX 4 AA4 SER L 125 GLY L 132 1 8 HELIX 5 AA5 LYS L 187 GLU L 191 1 5 HELIX 6 AA6 ARG H 87 THR H 91 5 5 HELIX 7 AA7 ASP H 104 TYR H 108 5 5 SHEET 1 AA1 4 TYR E 88 GLU E 99 0 SHEET 2 AA1 4 ALA E 104 HIS E 113 -1 O ASP E 108 N THR E 94 SHEET 3 AA1 4 VAL E 39 ILE E 47 -1 N ILE E 47 O THR E 105 SHEET 4 AA1 4 TYR E 152 VAL E 153 -1 O TYR E 152 N ASN E 44 SHEET 1 AA2 2 GLU E 140 LEU E 141 0 SHEET 2 AA2 2 TYR E 144 THR E 145 -1 O TYR E 144 N LEU E 141 SHEET 1 AA3 4 LEU L 4 SER L 7 0 SHEET 2 AA3 4 ALA L 19 ALA L 25 -1 O SER L 22 N SER L 7 SHEET 3 AA3 4 ASP L 74 ILE L 79 -1 O PHE L 75 N CYS L 23 SHEET 4 AA3 4 PHE L 66 SER L 71 -1 N SER L 67 O ASN L 78 SHEET 1 AA4 6 SER L 10 VAL L 13 0 SHEET 2 AA4 6 THR L 106 ILE L 110 1 O GLU L 109 N LEU L 11 SHEET 3 AA4 6 ALA L 88 GLN L 94 -1 N ALA L 88 O VAL L 108 SHEET 4 AA4 6 MET L 37 GLN L 42 -1 N GLN L 42 O MET L 89 SHEET 5 AA4 6 LYS L 49 TYR L 53 -1 O LEU L 51 N TRP L 39 SHEET 6 AA4 6 ASN L 57 GLN L 58 -1 O ASN L 57 N TYR L 53 SHEET 1 AA5 2 ASP L 30 ASN L 31 0 SHEET 2 AA5 2 ILE L 34 SER L 35 -1 O ILE L 34 N ASN L 31 SHEET 1 AA6 4 THR L 118 PHE L 122 0 SHEET 2 AA6 4 GLY L 133 PHE L 143 -1 O ASN L 141 N THR L 118 SHEET 3 AA6 4 TYR L 177 THR L 186 -1 O LEU L 185 N ALA L 134 SHEET 4 AA6 4 VAL L 163 TRP L 167 -1 N LEU L 164 O THR L 182 SHEET 1 AA7 4 SER L 157 ARG L 159 0 SHEET 2 AA7 4 ASN L 149 ILE L 154 -1 N TRP L 152 O ARG L 159 SHEET 3 AA7 4 SER L 195 THR L 201 -1 O THR L 201 N ASN L 149 SHEET 4 AA7 4 ILE L 209 ASN L 214 -1 O LYS L 211 N CYS L 198 SHEET 1 AA8 4 GLN H 3 SER H 7 0 SHEET 2 AA8 4 ARG H 18 SER H 25 -1 O ALA H 23 N VAL H 5 SHEET 3 AA8 4 THR H 78 MET H 83 -1 O MET H 83 N ARG H 18 SHEET 4 AA8 4 PHE H 68 ASP H 73 -1 N ILE H 69 O GLN H 82 SHEET 1 AA9 6 GLY H 10 VAL H 12 0 SHEET 2 AA9 6 THR H 117 VAL H 121 1 O THR H 120 N GLY H 10 SHEET 3 AA9 6 ALA H 92 SER H 99 -1 N TYR H 94 O THR H 117 SHEET 4 AA9 6 GLY H 33 GLN H 39 -1 N VAL H 37 O TYR H 95 SHEET 5 AA9 6 LEU H 45 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 AA9 6 ILE H 58 TYR H 60 -1 O TYR H 59 N TYR H 50 SHEET 1 AB1 4 GLY H 10 VAL H 12 0 SHEET 2 AB1 4 THR H 117 VAL H 121 1 O THR H 120 N GLY H 10 SHEET 3 AB1 4 ALA H 92 SER H 99 -1 N TYR H 94 O THR H 117 SHEET 4 AB1 4 LEU H 110 TRP H 113 -1 O TYR H 112 N ARG H 98 SHEET 1 AB2 4 SER H 130 LEU H 134 0 SHEET 2 AB2 4 THR H 147 TYR H 155 -1 O LYS H 153 N SER H 130 SHEET 3 AB2 4 LEU H 184 THR H 192 -1 O TYR H 185 N TYR H 155 SHEET 4 AB2 4 VAL H 173 THR H 175 -1 N HIS H 174 O SER H 190 SHEET 1 AB3 4 SER H 130 LEU H 134 0 SHEET 2 AB3 4 THR H 147 TYR H 155 -1 O LYS H 153 N SER H 130 SHEET 3 AB3 4 LEU H 184 THR H 192 -1 O TYR H 185 N TYR H 155 SHEET 4 AB3 4 VAL H 179 GLN H 181 -1 N VAL H 179 O THR H 186 SHEET 1 AB4 3 THR H 161 TRP H 164 0 SHEET 2 AB4 3 THR H 204 HIS H 209 -1 O ASN H 206 N THR H 163 SHEET 3 AB4 3 THR H 214 LYS H 219 -1 O LYS H 218 N CYS H 205 SSBOND 1 CYS E 91 CYS E 111 1555 1555 2.03 SSBOND 2 CYS L 23 CYS L 92 1555 1555 2.04 SSBOND 3 CYS L 138 CYS L 198 1555 1555 2.03 SSBOND 4 CYS H 22 CYS H 96 1555 1555 2.04 SSBOND 5 CYS H 150 CYS H 205 1555 1555 2.04 CISPEP 1 SER L 7 PRO L 8 0 -4.25 CISPEP 2 HIS L 80 PRO L 81 0 0.08 CISPEP 3 VAL L 98 PRO L 99 0 1.57 CISPEP 4 TYR L 144 PRO L 145 0 0.60 CISPEP 5 PHE H 156 PRO H 157 0 -3.69 CISPEP 6 GLU H 158 PRO H 159 0 -1.72 CISPEP 7 TRP H 198 PRO H 199 0 0.32 CRYST1 41.470 124.360 235.430 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024114 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008041 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004248 0.00000