HEADER HYDROLASE 20-MAR-23 8GKO TITLE CRYSTAL STRUCTURE ANALYSIS OF ASPERGILLUS FUMIGATUS ALKALINE PROTEASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALKALINE PROTEASE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL RESIDUES 27-121; COMPND 5 SYNONYM: ALP,ASPERGILLOPEPTIDASE B,ASPERGILLUS PROTEINASE B,ELASTASE, COMPND 6 ELASTINOLYTIC SERINE PROTEINASE,ORYZIN; COMPND 7 EC: 3.4.21.63; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: ALKALINE PROTEASE 1; COMPND 11 CHAIN: C; COMPND 12 FRAGMENT: C-TERMINAL RESIDUES 122-403; COMPND 13 SYNONYM: ALP,ASPERGILLOPEPTIDASE B,ASPERGILLUS PROTEINASE B,ELASTASE, COMPND 14 ELASTINOLYTIC SERINE PROTEINASE,ORYZIN; COMPND 15 EC: 3.4.21.63; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS FUMIGATUS AF293; SOURCE 3 ORGANISM_TAXID: 330879; SOURCE 4 STRAIN: ATCC MYA-4609 / AF293 / CBS 101355 / FGSC A1100; SOURCE 5 GENE: ALP1, ALK1, ALP, AFUA_4G11800; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: ASPERGILLUS FUMIGATUS AF293; SOURCE 11 ORGANISM_TAXID: 330879; SOURCE 12 STRAIN: ATCC MYA-4609 / AF293 / CBS 101355 / FGSC A1100; SOURCE 13 GENE: ALP1, ALK1, ALP, AFUA_4G11800; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALPHA-BETA HYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.FERNANDEZ,D.D.L.DIEC,W.GUO,S.RUSSI REVDAT 1 01-NOV-23 8GKO 0 JRNL AUTH O.N.PATTELLI,D.D.L.DIEC,W.GUO,S.RUSSI,D.FERNANDEZ JRNL TITL TARGETING ASPERGILLUS ALLERGEN ORYZIN WITH A CHEMICAL PROBE JRNL TITL 2 AT ATOMIC PRECISION. JRNL REF SCI REP V. 13 17926 2023 JRNL REFN ESSN 2045-2322 JRNL PMID 37864071 JRNL DOI 10.1038/S41598-023-45028-Z REMARK 2 REMARK 2 RESOLUTION. 1.06 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.06 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.58 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 3 NUMBER OF REFLECTIONS : 135789 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.141 REMARK 3 R VALUE (WORKING SET) : 0.140 REMARK 3 FREE R VALUE : 0.160 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 7013 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.06 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.09 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6095 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 56.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.3500 REMARK 3 BIN FREE R VALUE SET COUNT : 309 REMARK 3 BIN FREE R VALUE : 0.3700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2787 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 483 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02000 REMARK 3 B22 (A**2) : -0.07000 REMARK 3 B33 (A**2) : 0.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.028 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.028 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.022 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.096 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.981 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.976 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3027 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2815 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4127 ; 1.384 ; 1.938 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6494 ; 1.038 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 413 ; 6.234 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 121 ;38.524 ;24.959 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 472 ;11.748 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;12.919 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 464 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3614 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 697 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5842 ; 3.550 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 106 ;24.576 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 6155 ; 7.175 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 8GKO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-MAR-23. REMARK 100 THE DEPOSITION ID IS D_1000273104. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-OCT-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : LIQUID NITROGEN-COOLED DOUBLE REMARK 200 CRYSTAL, NON FIXED EXIT SLIT REMARK 200 OPTICS : FLAT SI RH COATED M0, REMARK 200 KIRKPATRICK-BAEZ FLAT BENT SI M1 REMARK 200 & M2 REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 142896 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.060 REMARK 200 RESOLUTION RANGE LOW (A) : 52.577 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07600 REMARK 200 FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.06 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 65.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 1.12500 REMARK 200 R SYM FOR SHELL (I) : 1.12500 REMARK 200 FOR SHELL : 0.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: AB INITIO PHASING REMARK 200 SOFTWARE USED: ARCIMBOLDO REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: ROD REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: POLYETHYLENEGLYCOL 550 REMARK 280 MONOMETHYLETHER, POLYETHYLENEGLYCOL 20,000, MES/IMIDAZOLE BUFFER, REMARK 280 EVAPORATION, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.30250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.27750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.38250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.27750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.30250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.38250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD1 HIS C 169 H GLU C 171 1.22 REMARK 500 H SER C 261 HG SER C 293 1.27 REMARK 500 H GLY C 283 HG1 THR C 348 1.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HG SER C 290 H THR C 342 3554 1.33 REMARK 500 H GLY C 185 O HOH C 905 1455 1.49 REMARK 500 OG SER C 309 O HOH A 228 3544 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 86 -117.72 51.47 REMARK 500 LYS C 139 54.95 -90.93 REMARK 500 ASP C 162 -150.98 -165.07 REMARK 500 SER C 174 -1.00 68.04 REMARK 500 SER C 174 18.77 57.92 REMARK 500 GLN C 221 -77.13 -93.33 REMARK 500 LYS C 249 28.50 -143.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 350 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH A 351 DISTANCE = 6.21 ANGSTROMS REMARK 525 HOH A 352 DISTANCE = 6.30 ANGSTROMS REMARK 525 HOH A 353 DISTANCE = 6.36 ANGSTROMS REMARK 525 HOH A 354 DISTANCE = 6.71 ANGSTROMS REMARK 525 HOH A 355 DISTANCE = 6.74 ANGSTROMS REMARK 525 HOH A 356 DISTANCE = 6.76 ANGSTROMS REMARK 525 HOH A 357 DISTANCE = 6.95 ANGSTROMS REMARK 525 HOH A 358 DISTANCE = 7.32 ANGSTROMS REMARK 525 HOH A 359 DISTANCE = 7.42 ANGSTROMS REMARK 525 HOH A 360 DISTANCE = 7.44 ANGSTROMS REMARK 525 HOH A 361 DISTANCE = 7.70 ANGSTROMS REMARK 525 HOH A 362 DISTANCE = 8.40 ANGSTROMS REMARK 525 HOH A 363 DISTANCE = 8.52 ANGSTROMS REMARK 525 HOH A 364 DISTANCE = 8.68 ANGSTROMS REMARK 525 HOH A 365 DISTANCE = 8.93 ANGSTROMS REMARK 525 HOH A 366 DISTANCE = 9.35 ANGSTROMS REMARK 525 HOH A 367 DISTANCE = 9.53 ANGSTROMS REMARK 525 HOH A 368 DISTANCE = 9.71 ANGSTROMS REMARK 525 HOH A 369 DISTANCE = 10.43 ANGSTROMS REMARK 525 HOH A 370 DISTANCE = 13.32 ANGSTROMS REMARK 525 HOH A 371 DISTANCE = 14.45 ANGSTROMS REMARK 525 HOH A 372 DISTANCE = 14.62 ANGSTROMS REMARK 525 HOH A 373 DISTANCE = 15.11 ANGSTROMS REMARK 525 HOH C 904 DISTANCE = 7.21 ANGSTROMS REMARK 525 HOH C 905 DISTANCE = 12.60 ANGSTROMS REMARK 525 HOH C 906 DISTANCE = 13.19 ANGSTROMS REMARK 525 HOH C 907 DISTANCE = 13.31 ANGSTROMS REMARK 525 HOH C 908 DISTANCE = 13.76 ANGSTROMS REMARK 525 HOH C 909 DISTANCE = 15.83 ANGSTROMS REMARK 525 HOH C 910 DISTANCE = 18.09 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA C 509 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA C 300 O REMARK 620 2 THR C 302 OG1 90.2 REMARK 620 3 VAL C 321 O 159.4 80.6 REMARK 620 4 ASP C 323 OD2 75.8 96.2 86.9 REMARK 620 5 HOH C 642 O 101.4 84.4 96.0 177.1 REMARK 620 N 1 2 3 4 DBREF 8GKO A 27 121 UNP P28296 ORYZ_ASPFU 27 121 DBREF 8GKO C 122 403 UNP P28296 ORYZ_ASPFU 122 403 SEQRES 1 A 95 ARG ARG ALA ALA GLN LYS ILE PRO GLY LYS TYR ILE VAL SEQRES 2 A 95 THR PHE LYS PRO GLY THR ASP THR ALA THR ILE GLU SER SEQRES 3 A 95 HIS THR LEU TRP ALA THR ASP LEU HIS LYS ARG ASN LEU SEQRES 4 A 95 GLU ARG ARG ASP THR THR SER GLY GLU PRO PRO VAL GLY SEQRES 5 A 95 ILE GLU LYS SER TYR LYS ILE LYS ASP PHE ALA ALA TYR SEQRES 6 A 95 ALA GLY SER PHE ASP ASP ALA THR ILE GLU GLU ILE ARG SEQRES 7 A 95 LYS SER ALA ASP VAL ALA HIS VAL GLU GLU ASP GLN ILE SEQRES 8 A 95 TRP TYR LEU ASP SEQRES 1 C 282 ALA LEU THR THR GLN LYS GLY ALA PRO TRP GLY LEU GLY SEQRES 2 C 282 SER ILE SER HIS LYS GLY GLN ALA SER THR ASP TYR ILE SEQRES 3 C 282 TYR ASP THR SER ALA GLY ALA GLY THR TYR ALA TYR VAL SEQRES 4 C 282 VAL ASP SER GLY ILE ASN VAL ASN HIS VAL GLU PHE GLU SEQRES 5 C 282 SER ARG ALA SER LEU ALA TYR ASN ALA ALA GLY GLY SER SEQRES 6 C 282 HIS VAL ASP SER ILE GLY HIS GLY THR HIS VAL ALA GLY SEQRES 7 C 282 THR ILE GLY GLY LYS THR TYR GLY VAL ALA LYS LYS THR SEQRES 8 C 282 ASN LEU LEU SER VAL LYS VAL PHE GLN GLY GLU SER SER SEQRES 9 C 282 SER THR SER ILE ILE LEU ASP GLY PHE ASN TRP ALA VAL SEQRES 10 C 282 ASN ASP ILE VAL SER LYS GLY ARG THR LYS LYS ALA ALA SEQRES 11 C 282 ILE ASN MET SER LEU GLY GLY GLY TYR SER TYR ALA PHE SEQRES 12 C 282 ASN ASN ALA VAL GLU ASN ALA PHE ASP GLU GLY VAL LEU SEQRES 13 C 282 SER VAL VAL ALA ALA GLY ASN GLU ASN SER ASP ALA SER SEQRES 14 C 282 ASN THR SER PRO ALA SER ALA PRO ASN ALA LEU THR VAL SEQRES 15 C 282 ALA ALA ILE ASN LYS SER ASN ALA ARG ALA SER PHE SER SEQRES 16 C 282 ASN TYR GLY SER VAL VAL ASP ILE PHE ALA PRO GLY GLN SEQRES 17 C 282 ASP ILE LEU SER ALA TRP ILE GLY SER THR THR ALA THR SEQRES 18 C 282 ASN THR ILE SER GLY THR SER MET ALA THR PRO HIS ILE SEQRES 19 C 282 VAL GLY LEU SER VAL TYR LEU MET GLY LEU GLU ASN LEU SEQRES 20 C 282 SER GLY PRO ALA ALA VAL THR ALA ARG ILE LYS GLU LEU SEQRES 21 C 282 ALA THR ASN GLY VAL VAL THR ASN VAL LYS GLY SER PRO SEQRES 22 C 282 ASN LYS LEU ALA TYR ASN GLY ASN ALA HET IMD C 501 10 HET EDO C 502 10 HET EDO C 503 10 HET EDO C 504 10 HET EDO C 505 10 HET FOR C 506 4 HET FOR C 507 4 HET FOR C 508 4 HET NA C 509 1 HETNAM IMD IMIDAZOLE HETNAM EDO 1,2-ETHANEDIOL HETNAM FOR FORMYL GROUP HETNAM NA SODIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 IMD C3 H5 N2 1+ FORMUL 4 EDO 4(C2 H6 O2) FORMUL 8 FOR 3(C H2 O) FORMUL 11 NA NA 1+ FORMUL 12 HOH *483(H2 O) HELIX 1 AA1 ASP A 46 ARG A 67 1 22 HELIX 2 AA2 ASP A 96 SER A 106 1 11 HELIX 3 AA3 PRO C 130 SER C 137 1 8 HELIX 4 AA4 HIS C 169 GLU C 173 5 5 HELIX 5 AA5 GLY C 192 GLY C 203 1 12 HELIX 6 AA6 THR C 227 LYS C 244 1 18 HELIX 7 AA7 SER C 261 GLU C 274 1 14 HELIX 8 AA8 ASP C 288 SER C 290 5 3 HELIX 9 AA9 GLY C 347 GLU C 366 1 20 HELIX 10 AB1 GLY C 370 ALA C 382 1 13 SHEET 1 AA1 5 GLY A 78 ILE A 85 0 SHEET 2 AA1 5 PHE A 88 SER A 94 -1 O ALA A 92 N GLU A 80 SHEET 3 AA1 5 LYS A 32 PHE A 41 -1 N VAL A 39 O TYR A 91 SHEET 4 AA1 5 VAL A 109 TYR A 119 -1 O ASP A 115 N ILE A 33 SHEET 5 AA1 5 SER C 224 SER C 226 -1 O SER C 225 N TRP A 118 SHEET 1 AA2 2 LEU C 123 GLN C 126 0 SHEET 2 AA2 2 TYR C 146 ASP C 149 -1 O TYR C 146 N GLN C 126 SHEET 1 AA3 7 ALA C 176 ASN C 181 0 SHEET 2 AA3 7 ASN C 213 LYS C 218 1 O SER C 216 N SER C 177 SHEET 3 AA3 7 TYR C 157 ASP C 162 1 N ALA C 158 O ASN C 213 SHEET 4 AA3 7 ALA C 250 MET C 254 1 O ASN C 253 N TYR C 159 SHEET 5 AA3 7 LEU C 277 ALA C 281 1 O VAL C 279 N ILE C 252 SHEET 6 AA3 7 LEU C 301 ILE C 306 1 O VAL C 303 N VAL C 280 SHEET 7 AA3 7 ILE C 324 PRO C 327 1 O ILE C 324 N ALA C 304 SHEET 1 AA4 2 GLY C 258 GLY C 259 0 SHEET 2 AA4 2 THR C 292 SER C 293 -1 O SER C 293 N GLY C 258 SHEET 1 AA5 2 ILE C 331 ALA C 334 0 SHEET 2 AA5 2 THR C 342 ILE C 345 -1 O ILE C 345 N ILE C 331 SHEET 1 AA6 2 THR C 383 ASN C 384 0 SHEET 2 AA6 2 LYS C 396 LEU C 397 -1 O LEU C 397 N THR C 383 LINK O ALA C 300 NA NA C 509 1555 1555 2.56 LINK OG1 THR C 302 NA NA C 509 1555 1555 2.54 LINK O VAL C 321 NA NA C 509 1555 1555 2.67 LINK OD2 ASP C 323 NA NA C 509 1555 1555 2.42 LINK NA NA C 509 O HOH C 642 1555 1555 2.39 CISPEP 1 SER C 293 PRO C 294 0 -1.13 CRYST1 60.605 70.765 78.555 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016500 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014131 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012730 0.00000