HEADER DNA BINDING PROTEIN 21-MAR-23 8GLA TITLE CO-CRYSTAL STRUCTURE OF CAPCNA BOUND TO THE AOH1996 DERIVATIVE, TITLE 2 AOH1996-1LE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROLIFERATING CELL NUCLEAR ANTIGEN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: PCNA,CYCLIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PCNA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PCNA, TRANSCRIPTION-REPLICATION CONFLICT, DNA REPLICATION STRESS, DNA KEYWDS 2 REPAIR, AOH1160, AOH1996, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.JOSSART,J.J.PERRY REVDAT 5 01-NOV-23 8GLA 1 JRNL REVDAT 4 16-AUG-23 8GLA 1 JRNL REVDAT 3 09-AUG-23 8GLA 1 JRNL REVDAT 2 02-AUG-23 8GLA 1 JRNL REMARK REVDAT 1 26-JUL-23 8GLA 0 JRNL AUTH L.GU,M.LI,C.M.LI,P.HARATIPOUR,R.LINGEMAN,J.JOSSART,M.GUTOVA, JRNL AUTH 2 L.FLORES,C.HYDE,N.KENJIC,H.LI,V.CHUNG,H.LI,B.LOMENICK, JRNL AUTH 3 D.D.VON HOFF,T.W.SYNOLD,K.S.ABOODY,Y.LIU,D.HORNE,R.J.HICKEY, JRNL AUTH 4 J.J.P.PERRY,L.H.MALKAS JRNL TITL SMALL MOLECULE TARGETING OF TRANSCRIPTION-REPLICATION JRNL TITL 2 CONFLICT FOR SELECTIVE CHEMOTHERAPY. JRNL REF CELL CHEM BIOL V. 30 1235 2023 JRNL REFN ESSN 2451-9456 JRNL PMID 37531956 JRNL DOI 10.1016/J.CHEMBIOL.2023.07.001 REMARK 2 REMARK 2 RESOLUTION. 3.77 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.19.1_4122: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.77 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 19329 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1895 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.5900 - 9.0500 0.99 1241 135 0.1741 0.2419 REMARK 3 2 9.0400 - 7.1900 1.00 1260 115 0.1943 0.2258 REMARK 3 3 7.1900 - 6.2900 0.99 1242 144 0.2462 0.3197 REMARK 3 4 6.2900 - 5.7200 1.00 1256 132 0.2433 0.2738 REMARK 3 5 5.7200 - 5.3100 1.00 1241 134 0.1979 0.2613 REMARK 3 6 5.3100 - 5.0000 1.00 1248 138 0.1814 0.2354 REMARK 3 7 4.9900 - 4.7500 1.00 1236 148 0.1754 0.2265 REMARK 3 8 4.7500 - 4.5400 1.00 1256 134 0.1710 0.2227 REMARK 3 9 4.5400 - 4.3600 1.00 1245 138 0.1832 0.2270 REMARK 3 10 4.3600 - 4.2100 1.00 1264 121 0.2081 0.2645 REMARK 3 11 4.2100 - 4.0800 1.00 1252 135 0.2388 0.2666 REMARK 3 12 4.0800 - 3.9700 1.00 1197 156 0.2582 0.3235 REMARK 3 13 3.9700 - 3.8600 1.00 1286 139 0.2675 0.3486 REMARK 3 14 3.8600 - 3.7700 0.97 1210 126 0.2817 0.3376 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.470 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 7665 REMARK 3 ANGLE : 0.687 10331 REMARK 3 CHIRALITY : 0.049 1208 REMARK 3 PLANARITY : 0.004 1296 REMARK 3 DIHEDRAL : 8.102 1015 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8GLA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAR-23. REMARK 100 THE DEPOSITION ID IS D_1000272997. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAY-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19342 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.770 REMARK 200 RESOLUTION RANGE LOW (A) : 39.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.20200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.77 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.13 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.78800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3VKX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CACODYLATE PH 6.5, 0.2 M REMARK 280 SODIUM CHLORIDE, 2.0 M AMMONIUM SULFATE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 99.74600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 57.58838 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 43.13767 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 99.74600 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 57.58838 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 43.13767 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 99.74600 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 57.58838 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 43.13767 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 115.17676 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 86.27533 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 115.17676 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 86.27533 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 115.17676 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 86.27533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -74.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -73.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 99.74600 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -172.76514 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 199.49200 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 94 REMARK 465 ASN A 95 REMARK 465 ALA A 96 REMARK 465 PRO A 106 REMARK 465 ASN A 107 REMARK 465 GLN A 108 REMARK 465 GLU A 109 REMARK 465 ASP A 165 REMARK 465 GLY A 166 REMARK 465 THR A 185 REMARK 465 SER A 186 REMARK 465 ASN A 187 REMARK 465 VAL A 188 REMARK 465 ASP A 189 REMARK 465 LYS A 190 REMARK 465 GLU A 191 REMARK 465 GLU A 192 REMARK 465 ILE A 255 REMARK 465 GLU A 256 REMARK 465 ASP A 257 REMARK 465 GLU A 258 REMARK 465 GLU A 259 REMARK 465 GLY A 260 REMARK 465 SER A 261 REMARK 465 GLY B 83 REMARK 465 ALA B 163 REMARK 465 LYS B 164 REMARK 465 ASP B 165 REMARK 465 GLY B 166 REMARK 465 SER B 186 REMARK 465 ASN B 187 REMARK 465 VAL B 188 REMARK 465 ASP B 189 REMARK 465 LYS B 190 REMARK 465 GLU B 191 REMARK 465 GLU B 192 REMARK 465 GLU B 193 REMARK 465 LYS B 254 REMARK 465 ILE B 255 REMARK 465 GLU B 256 REMARK 465 ASP B 257 REMARK 465 GLU B 258 REMARK 465 GLU B 259 REMARK 465 GLY B 260 REMARK 465 SER B 261 REMARK 465 MET C 1 REMARK 465 GLU C 93 REMARK 465 ASP C 94 REMARK 465 ASN C 95 REMARK 465 ALA C 96 REMARK 465 PRO C 106 REMARK 465 ASN C 107 REMARK 465 GLN C 108 REMARK 465 ASP C 122 REMARK 465 ALA C 163 REMARK 465 LYS C 164 REMARK 465 ASP C 165 REMARK 465 GLY C 166 REMARK 465 SER C 186 REMARK 465 ASN C 187 REMARK 465 VAL C 188 REMARK 465 ASP C 189 REMARK 465 LYS C 190 REMARK 465 GLU C 191 REMARK 465 GLU C 192 REMARK 465 MET C 199 REMARK 465 GLU C 256 REMARK 465 ASP C 257 REMARK 465 GLU C 258 REMARK 465 GLU C 259 REMARK 465 GLY C 260 REMARK 465 SER C 261 REMARK 465 MET D 1 REMARK 465 PRO D 106 REMARK 465 GLY D 155 REMARK 465 ASP D 165 REMARK 465 GLY D 166 REMARK 465 THR D 185 REMARK 465 SER D 186 REMARK 465 ASN D 187 REMARK 465 VAL D 188 REMARK 465 ASP D 189 REMARK 465 LYS D 190 REMARK 465 GLU D 191 REMARK 465 GLU D 192 REMARK 465 GLU D 256 REMARK 465 ASP D 257 REMARK 465 GLU D 258 REMARK 465 GLU D 259 REMARK 465 GLY D 260 REMARK 465 SER D 261 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 61 -76.78 -101.58 REMARK 500 CYS A 62 83.89 34.39 REMARK 500 ASP A 63 -83.45 -82.90 REMARK 500 ASP A 232 -7.41 79.95 REMARK 500 ASP A 243 -12.20 63.14 REMARK 500 MET A 244 -119.51 -107.64 REMARK 500 GLN B 8 78.94 -100.83 REMARK 500 ILE B 30 100.54 -56.76 REMARK 500 ARG B 64 117.03 83.89 REMARK 500 CYS B 81 43.04 -82.22 REMARK 500 GLN B 108 31.38 -72.76 REMARK 500 GLU B 130 96.00 -64.40 REMARK 500 ASP B 243 -54.80 65.94 REMARK 500 ASP C 63 36.73 -81.19 REMARK 500 GLU C 124 -145.91 -113.77 REMARK 500 ASP C 243 -56.01 69.17 REMARK 500 ALA D 67 70.03 -117.33 REMARK 500 ASP D 94 109.43 -55.47 REMARK 500 GLN D 108 -58.08 62.92 REMARK 500 LYS D 110 127.74 68.72 REMARK 500 ALA D 242 84.14 -49.10 REMARK 500 REMARK 500 REMARK: NULL DBREF 8GLA A 1 261 UNP P12004 PCNA_HUMAN 1 261 DBREF 8GLA B 1 261 UNP P12004 PCNA_HUMAN 1 261 DBREF 8GLA C 1 261 UNP P12004 PCNA_HUMAN 1 261 DBREF 8GLA D 1 261 UNP P12004 PCNA_HUMAN 1 261 SEQRES 1 A 261 MET PHE GLU ALA ARG LEU VAL GLN GLY SER ILE LEU LYS SEQRES 2 A 261 LYS VAL LEU GLU ALA LEU LYS ASP LEU ILE ASN GLU ALA SEQRES 3 A 261 CYS TRP ASP ILE SER SER SER GLY VAL ASN LEU GLN SER SEQRES 4 A 261 MET ASP SER SER HIS VAL SER LEU VAL GLN LEU THR LEU SEQRES 5 A 261 ARG SER GLU GLY PHE ASP THR TYR ARG CYS ASP ARG ASN SEQRES 6 A 261 LEU ALA MET GLY VAL ASN LEU THR SER MET SER LYS ILE SEQRES 7 A 261 LEU LYS CYS ALA GLY ASN GLU ASP ILE ILE THR LEU ARG SEQRES 8 A 261 ALA GLU ASP ASN ALA ASP THR LEU ALA LEU VAL PHE GLU SEQRES 9 A 261 ALA PRO ASN GLN GLU LYS VAL SER ASP TYR GLU MET LYS SEQRES 10 A 261 LEU MET ASP LEU ASP VAL GLU GLN LEU GLY ILE PRO GLU SEQRES 11 A 261 GLN GLU TYR SER CYS VAL VAL LYS MET PRO SER GLY GLU SEQRES 12 A 261 PHE ALA ARG ILE CYS ARG ASP LEU SER HIS ILE GLY ASP SEQRES 13 A 261 ALA VAL VAL ILE SER CYS ALA LYS ASP GLY VAL LYS PHE SEQRES 14 A 261 SER ALA SER GLY GLU LEU GLY ASN GLY ASN ILE LYS LEU SEQRES 15 A 261 SER GLN THR SER ASN VAL ASP LYS GLU GLU GLU ALA VAL SEQRES 16 A 261 THR ILE GLU MET ASN GLU PRO VAL GLN LEU THR PHE ALA SEQRES 17 A 261 LEU ARG TYR LEU ASN PHE PHE THR LYS ALA THR PRO LEU SEQRES 18 A 261 SER SER THR VAL THR LEU SER MET SER ALA ASP VAL PRO SEQRES 19 A 261 LEU VAL VAL GLU TYR LYS ILE ALA ASP MET GLY HIS LEU SEQRES 20 A 261 LYS TYR TYR LEU ALA PRO LYS ILE GLU ASP GLU GLU GLY SEQRES 21 A 261 SER SEQRES 1 B 261 MET PHE GLU ALA ARG LEU VAL GLN GLY SER ILE LEU LYS SEQRES 2 B 261 LYS VAL LEU GLU ALA LEU LYS ASP LEU ILE ASN GLU ALA SEQRES 3 B 261 CYS TRP ASP ILE SER SER SER GLY VAL ASN LEU GLN SER SEQRES 4 B 261 MET ASP SER SER HIS VAL SER LEU VAL GLN LEU THR LEU SEQRES 5 B 261 ARG SER GLU GLY PHE ASP THR TYR ARG CYS ASP ARG ASN SEQRES 6 B 261 LEU ALA MET GLY VAL ASN LEU THR SER MET SER LYS ILE SEQRES 7 B 261 LEU LYS CYS ALA GLY ASN GLU ASP ILE ILE THR LEU ARG SEQRES 8 B 261 ALA GLU ASP ASN ALA ASP THR LEU ALA LEU VAL PHE GLU SEQRES 9 B 261 ALA PRO ASN GLN GLU LYS VAL SER ASP TYR GLU MET LYS SEQRES 10 B 261 LEU MET ASP LEU ASP VAL GLU GLN LEU GLY ILE PRO GLU SEQRES 11 B 261 GLN GLU TYR SER CYS VAL VAL LYS MET PRO SER GLY GLU SEQRES 12 B 261 PHE ALA ARG ILE CYS ARG ASP LEU SER HIS ILE GLY ASP SEQRES 13 B 261 ALA VAL VAL ILE SER CYS ALA LYS ASP GLY VAL LYS PHE SEQRES 14 B 261 SER ALA SER GLY GLU LEU GLY ASN GLY ASN ILE LYS LEU SEQRES 15 B 261 SER GLN THR SER ASN VAL ASP LYS GLU GLU GLU ALA VAL SEQRES 16 B 261 THR ILE GLU MET ASN GLU PRO VAL GLN LEU THR PHE ALA SEQRES 17 B 261 LEU ARG TYR LEU ASN PHE PHE THR LYS ALA THR PRO LEU SEQRES 18 B 261 SER SER THR VAL THR LEU SER MET SER ALA ASP VAL PRO SEQRES 19 B 261 LEU VAL VAL GLU TYR LYS ILE ALA ASP MET GLY HIS LEU SEQRES 20 B 261 LYS TYR TYR LEU ALA PRO LYS ILE GLU ASP GLU GLU GLY SEQRES 21 B 261 SER SEQRES 1 C 261 MET PHE GLU ALA ARG LEU VAL GLN GLY SER ILE LEU LYS SEQRES 2 C 261 LYS VAL LEU GLU ALA LEU LYS ASP LEU ILE ASN GLU ALA SEQRES 3 C 261 CYS TRP ASP ILE SER SER SER GLY VAL ASN LEU GLN SER SEQRES 4 C 261 MET ASP SER SER HIS VAL SER LEU VAL GLN LEU THR LEU SEQRES 5 C 261 ARG SER GLU GLY PHE ASP THR TYR ARG CYS ASP ARG ASN SEQRES 6 C 261 LEU ALA MET GLY VAL ASN LEU THR SER MET SER LYS ILE SEQRES 7 C 261 LEU LYS CYS ALA GLY ASN GLU ASP ILE ILE THR LEU ARG SEQRES 8 C 261 ALA GLU ASP ASN ALA ASP THR LEU ALA LEU VAL PHE GLU SEQRES 9 C 261 ALA PRO ASN GLN GLU LYS VAL SER ASP TYR GLU MET LYS SEQRES 10 C 261 LEU MET ASP LEU ASP VAL GLU GLN LEU GLY ILE PRO GLU SEQRES 11 C 261 GLN GLU TYR SER CYS VAL VAL LYS MET PRO SER GLY GLU SEQRES 12 C 261 PHE ALA ARG ILE CYS ARG ASP LEU SER HIS ILE GLY ASP SEQRES 13 C 261 ALA VAL VAL ILE SER CYS ALA LYS ASP GLY VAL LYS PHE SEQRES 14 C 261 SER ALA SER GLY GLU LEU GLY ASN GLY ASN ILE LYS LEU SEQRES 15 C 261 SER GLN THR SER ASN VAL ASP LYS GLU GLU GLU ALA VAL SEQRES 16 C 261 THR ILE GLU MET ASN GLU PRO VAL GLN LEU THR PHE ALA SEQRES 17 C 261 LEU ARG TYR LEU ASN PHE PHE THR LYS ALA THR PRO LEU SEQRES 18 C 261 SER SER THR VAL THR LEU SER MET SER ALA ASP VAL PRO SEQRES 19 C 261 LEU VAL VAL GLU TYR LYS ILE ALA ASP MET GLY HIS LEU SEQRES 20 C 261 LYS TYR TYR LEU ALA PRO LYS ILE GLU ASP GLU GLU GLY SEQRES 21 C 261 SER SEQRES 1 D 261 MET PHE GLU ALA ARG LEU VAL GLN GLY SER ILE LEU LYS SEQRES 2 D 261 LYS VAL LEU GLU ALA LEU LYS ASP LEU ILE ASN GLU ALA SEQRES 3 D 261 CYS TRP ASP ILE SER SER SER GLY VAL ASN LEU GLN SER SEQRES 4 D 261 MET ASP SER SER HIS VAL SER LEU VAL GLN LEU THR LEU SEQRES 5 D 261 ARG SER GLU GLY PHE ASP THR TYR ARG CYS ASP ARG ASN SEQRES 6 D 261 LEU ALA MET GLY VAL ASN LEU THR SER MET SER LYS ILE SEQRES 7 D 261 LEU LYS CYS ALA GLY ASN GLU ASP ILE ILE THR LEU ARG SEQRES 8 D 261 ALA GLU ASP ASN ALA ASP THR LEU ALA LEU VAL PHE GLU SEQRES 9 D 261 ALA PRO ASN GLN GLU LYS VAL SER ASP TYR GLU MET LYS SEQRES 10 D 261 LEU MET ASP LEU ASP VAL GLU GLN LEU GLY ILE PRO GLU SEQRES 11 D 261 GLN GLU TYR SER CYS VAL VAL LYS MET PRO SER GLY GLU SEQRES 12 D 261 PHE ALA ARG ILE CYS ARG ASP LEU SER HIS ILE GLY ASP SEQRES 13 D 261 ALA VAL VAL ILE SER CYS ALA LYS ASP GLY VAL LYS PHE SEQRES 14 D 261 SER ALA SER GLY GLU LEU GLY ASN GLY ASN ILE LYS LEU SEQRES 15 D 261 SER GLN THR SER ASN VAL ASP LYS GLU GLU GLU ALA VAL SEQRES 16 D 261 THR ILE GLU MET ASN GLU PRO VAL GLN LEU THR PHE ALA SEQRES 17 D 261 LEU ARG TYR LEU ASN PHE PHE THR LYS ALA THR PRO LEU SEQRES 18 D 261 SER SER THR VAL THR LEU SER MET SER ALA ASP VAL PRO SEQRES 19 D 261 LEU VAL VAL GLU TYR LYS ILE ALA ASP MET GLY HIS LEU SEQRES 20 D 261 LYS TYR TYR LEU ALA PRO LYS ILE GLU ASP GLU GLU GLY SEQRES 21 D 261 SER HET ZQZ A 301 37 HET ZQZ A 302 37 HET ZQZ A 303 37 HET CL A 304 1 HET CL A 305 1 HET ZQZ B 301 37 HET ZQZ B 302 37 HET ZQZ B 303 37 HET CL B 304 1 HET CL B 305 1 HET CL C 301 1 HET CL C 302 1 HET CL D 301 1 HET CL D 302 1 HETNAM ZQZ N-[2-(3-METHOXYPHENOXY)PHENYL]-N~2~-(NAPHTHALENE-1- HETNAM 2 ZQZ CARBONYL)-L-ALPHA-GLUTAMINE HETNAM CL CHLORIDE ION FORMUL 5 ZQZ 6(C29 H26 N2 O6) FORMUL 8 CL 8(CL 1-) HELIX 1 AA1 GLN A 8 LYS A 20 1 13 HELIX 2 AA2 LEU A 72 ALA A 82 1 11 HELIX 3 AA3 SER A 141 GLY A 155 1 15 HELIX 4 AA4 LEU A 209 THR A 216 1 8 HELIX 5 AA5 LYS A 217 SER A 222 5 6 HELIX 6 AA6 GLY B 9 ASP B 21 1 13 HELIX 7 AA7 LEU B 72 LYS B 80 1 9 HELIX 8 AA8 SER B 141 LEU B 151 1 11 HELIX 9 AA9 SER B 152 ILE B 154 5 3 HELIX 10 AB1 LEU B 209 THR B 216 1 8 HELIX 11 AB2 LYS B 217 THR B 219 5 3 HELIX 12 AB3 GLY C 9 ILE C 23 1 15 HELIX 13 AB4 LEU C 72 LEU C 79 1 8 HELIX 14 AB5 SER C 141 HIS C 153 1 13 HELIX 15 AB6 LEU C 209 THR C 216 1 8 HELIX 16 AB7 LYS C 217 SER C 222 5 6 HELIX 17 AB8 GLY D 9 ASP D 21 1 13 HELIX 18 AB9 GLU D 55 PHE D 57 5 3 HELIX 19 AC1 LEU D 72 ALA D 82 1 11 HELIX 20 AC2 SER D 141 HIS D 153 1 13 HELIX 21 AC3 LEU D 209 THR D 216 1 8 HELIX 22 AC4 LYS D 217 SER D 222 5 6 SHEET 1 AA1 9 THR A 59 TYR A 60 0 SHEET 2 AA1 9 GLU A 3 LEU A 6 -1 N ARG A 5 O THR A 59 SHEET 3 AA1 9 ILE A 88 ARG A 91 -1 O ILE A 88 N LEU A 6 SHEET 4 AA1 9 LEU A 99 PHE A 103 -1 O ALA A 100 N ARG A 91 SHEET 5 AA1 9 VAL A 111 MET A 116 -1 O MET A 116 N LEU A 99 SHEET 6 AA1 9 ASN C 177 LYS C 181 -1 O ASN C 179 N ASP A 113 SHEET 7 AA1 9 LYS C 168 SER C 172 -1 N ALA C 171 O GLY C 178 SHEET 8 AA1 9 ALA C 157 SER C 161 -1 N VAL C 159 O SER C 170 SHEET 9 AA1 9 GLN C 204 ALA C 208 -1 O PHE C 207 N VAL C 158 SHEET 1 AA2 9 LEU A 66 ASN A 71 0 SHEET 2 AA2 9 GLU A 25 ILE A 30 -1 N TRP A 28 O MET A 68 SHEET 3 AA2 9 VAL A 35 MET A 40 -1 O ASN A 36 N ASP A 29 SHEET 4 AA2 9 SER A 46 THR A 51 -1 O LEU A 50 N LEU A 37 SHEET 5 AA2 9 HIS A 246 LEU A 251 -1 O TYR A 250 N LEU A 47 SHEET 6 AA2 9 VAL A 233 LYS A 240 -1 N TYR A 239 O LEU A 247 SHEET 7 AA2 9 THR A 224 SER A 230 -1 N SER A 228 O VAL A 236 SHEET 8 AA2 9 CYS A 135 PRO A 140 -1 N CYS A 135 O MET A 229 SHEET 9 AA2 9 THR A 196 MET A 199 -1 O GLU A 198 N VAL A 136 SHEET 1 AA3 2 ALA A 157 ILE A 160 0 SHEET 2 AA3 2 LEU A 205 ALA A 208 -1 O PHE A 207 N VAL A 158 SHEET 1 AA4 7 LYS A 168 SER A 172 0 SHEET 2 AA4 7 GLY A 176 LEU A 182 -1 O ILE A 180 N PHE A 169 SHEET 3 AA4 7 LYS B 110 LYS B 117 -1 O VAL B 111 N LYS A 181 SHEET 4 AA4 7 THR B 98 GLU B 104 -1 N PHE B 103 O SER B 112 SHEET 5 AA4 7 ILE B 87 ALA B 92 -1 N ILE B 87 O GLU B 104 SHEET 6 AA4 7 PHE B 2 LEU B 6 -1 N ALA B 4 O LEU B 90 SHEET 7 AA4 7 THR B 59 CYS B 62 -1 O ARG B 61 N GLU B 3 SHEET 1 AA5 9 LEU B 66 ASN B 71 0 SHEET 2 AA5 9 GLU B 25 ILE B 30 -1 N ILE B 30 O LEU B 66 SHEET 3 AA5 9 GLY B 34 MET B 40 -1 O ASN B 36 N ASP B 29 SHEET 4 AA5 9 SER B 46 ARG B 53 -1 O LEU B 52 N VAL B 35 SHEET 5 AA5 9 GLY B 245 LEU B 251 -1 O TYR B 250 N LEU B 47 SHEET 6 AA5 9 VAL B 233 ILE B 241 -1 N VAL B 237 O TYR B 249 SHEET 7 AA5 9 THR B 224 SER B 230 -1 N THR B 226 O GLU B 238 SHEET 8 AA5 9 CYS B 135 PRO B 140 -1 N VAL B 137 O LEU B 227 SHEET 9 AA5 9 THR B 196 MET B 199 -1 O GLU B 198 N VAL B 136 SHEET 1 AA6 9 GLN B 204 ALA B 208 0 SHEET 2 AA6 9 ALA B 157 SER B 161 -1 N VAL B 158 O PHE B 207 SHEET 3 AA6 9 LYS B 168 SER B 172 -1 O SER B 170 N VAL B 159 SHEET 4 AA6 9 GLY B 176 LYS B 181 -1 O ILE B 180 N PHE B 169 SHEET 5 AA6 9 ASP C 113 LYS C 117 -1 O ASP C 113 N ASN B 179 SHEET 6 AA6 9 THR C 98 GLU C 104 -1 N LEU C 101 O TYR C 114 SHEET 7 AA6 9 ILE C 87 LEU C 90 -1 N ILE C 87 O GLU C 104 SHEET 8 AA6 9 GLU C 3 LEU C 6 -1 N LEU C 6 O ILE C 88 SHEET 9 AA6 9 TYR C 60 ARG C 61 -1 O ARG C 61 N GLU C 3 SHEET 1 AA7 9 MET C 68 ASN C 71 0 SHEET 2 AA7 9 GLU C 25 ASP C 29 -1 N TRP C 28 O MET C 68 SHEET 3 AA7 9 GLY C 34 MET C 40 -1 O ASN C 36 N ASP C 29 SHEET 4 AA7 9 SER C 46 ARG C 53 -1 O LEU C 52 N VAL C 35 SHEET 5 AA7 9 GLY C 245 LEU C 251 -1 O TYR C 250 N LEU C 47 SHEET 6 AA7 9 LEU C 235 TYR C 239 -1 N TYR C 239 O LEU C 247 SHEET 7 AA7 9 THR C 224 SER C 228 -1 N SER C 228 O VAL C 236 SHEET 8 AA7 9 VAL C 137 PRO C 140 -1 N VAL C 137 O LEU C 227 SHEET 9 AA7 9 THR C 196 ILE C 197 -1 O THR C 196 N LYS C 138 SHEET 1 AA8 5 THR D 59 ARG D 61 0 SHEET 2 AA8 5 GLU D 3 LEU D 6 -1 N GLU D 3 O ARG D 61 SHEET 3 AA8 5 ILE D 87 ARG D 91 -1 O LEU D 90 N ALA D 4 SHEET 4 AA8 5 THR D 98 GLU D 104 -1 O GLU D 104 N ILE D 87 SHEET 5 AA8 5 VAL D 111 LYS D 117 -1 O TYR D 114 N LEU D 101 SHEET 1 AA9 9 LEU D 66 ASN D 71 0 SHEET 2 AA9 9 GLU D 25 ILE D 30 -1 N ILE D 30 O LEU D 66 SHEET 3 AA9 9 GLY D 34 MET D 40 -1 O ASN D 36 N ASP D 29 SHEET 4 AA9 9 SER D 46 ARG D 53 -1 O LEU D 52 N VAL D 35 SHEET 5 AA9 9 GLY D 245 LEU D 251 -1 O LYS D 248 N GLN D 49 SHEET 6 AA9 9 VAL D 233 TYR D 239 -1 N TYR D 239 O LEU D 247 SHEET 7 AA9 9 THR D 224 SER D 230 -1 N SER D 228 O VAL D 236 SHEET 8 AA9 9 CYS D 135 PRO D 140 -1 N CYS D 135 O MET D 229 SHEET 9 AA9 9 THR D 196 MET D 199 -1 O THR D 196 N LYS D 138 SHEET 1 AB1 4 ASN D 177 LYS D 181 0 SHEET 2 AB1 4 LYS D 168 SER D 172 -1 N ALA D 171 O GLY D 178 SHEET 3 AB1 4 ALA D 157 SER D 161 -1 N SER D 161 O LYS D 168 SHEET 4 AB1 4 GLN D 204 ALA D 208 -1 O LEU D 205 N ILE D 160 SSBOND 1 CYS A 135 CYS A 162 1555 1555 2.03 SSBOND 2 CYS B 135 CYS B 162 1555 1555 2.04 SSBOND 3 CYS C 135 CYS C 162 1555 1555 2.03 SSBOND 4 CYS D 135 CYS D 162 1555 1555 2.03 CRYST1 199.492 199.492 129.413 90.00 90.00 120.00 H 3 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005013 0.002894 0.000000 0.00000 SCALE2 0.000000 0.005788 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007727 0.00000