HEADER IMMUNE SYSTEM 22-MAR-23 8GLF TITLE CRYSTAL STRUCTURE OF HUMAN CD1B IN COMPLEX WITH SPHINGOMYELIN C34:2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: T-CELL SURFACE GLYCOPROTEIN CD1B; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CD1B; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HI5; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PFASTBAC; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 GENE: B2M, CDABP0092, HDCMA22P; SOURCE 17 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 18 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 20 EXPRESSION_SYSTEM_CELL_LINE: HI5; SOURCE 21 EXPRESSION_SYSTEM_VECTOR_TYPE: BACMID; SOURCE 22 EXPRESSION_SYSTEM_PLASMID: PFASTBAC KEYWDS IMMUNE SYSTEM, LIPID, CD1B, SPHINGOMYELIN EXPDTA X-RAY DIFFRACTION AUTHOR A.SHAHINE REVDAT 3 23-OCT-24 8GLF 1 REMARK REVDAT 2 01-MAY-24 8GLF 1 JRNL REVDAT 1 20-SEP-23 8GLF 0 JRNL AUTH S.HUANG,A.SHAHINE,T.Y.CHENG,Y.L.CHEN,S.W.NG,G.R.BALAJI, JRNL AUTH 2 R.FARQUHAR,S.GRAS,C.S.HARDMAN,J.D.ALTMAN,N.TAHIRI, JRNL AUTH 3 A.J.MINNAARD,G.S.OGG,J.A.MAYFIELD,J.ROSSJOHN,D.B.MOODY JRNL TITL CD1 LIPIDOMES REVEAL LIPID-BINDING MOTIFS AND SIZE-BASED JRNL TITL 2 ANTIGEN-DISPLAY MECHANISMS. JRNL REF CELL V. 186 4583 2023 JRNL REFN ISSN 1097-4172 JRNL PMID 37725977 JRNL DOI 10.1016/J.CELL.2023.08.022 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 3 NUMBER OF REFLECTIONS : 27096 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1383 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.8580 - 4.3067 0.96 2772 135 0.1574 0.1925 REMARK 3 2 4.3067 - 3.4192 0.96 2648 141 0.1405 0.1878 REMARK 3 3 3.4192 - 2.9872 0.96 2608 148 0.1670 0.2231 REMARK 3 4 2.9872 - 2.7142 0.96 2560 147 0.1968 0.2692 REMARK 3 5 2.7142 - 2.5197 0.96 2566 130 0.1901 0.2399 REMARK 3 6 2.5197 - 2.3712 0.96 2549 157 0.1916 0.2600 REMARK 3 7 2.3712 - 2.2525 0.95 2536 122 0.1948 0.2654 REMARK 3 8 2.2525 - 2.1544 0.95 2519 145 0.2042 0.2621 REMARK 3 9 2.1544 - 2.0715 0.94 2514 123 0.2262 0.3018 REMARK 3 10 2.0715 - 2.0000 0.92 2441 135 0.2318 0.3094 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 4:104 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.141 12.346 -8.812 REMARK 3 T TENSOR REMARK 3 T11: 0.0982 T22: 0.1412 REMARK 3 T33: 0.1882 T12: 0.0076 REMARK 3 T13: -0.0043 T23: 0.0137 REMARK 3 L TENSOR REMARK 3 L11: 1.6767 L22: 1.9109 REMARK 3 L33: 2.8728 L12: 0.1593 REMARK 3 L13: 0.1714 L23: -0.5773 REMARK 3 S TENSOR REMARK 3 S11: -0.0292 S12: -0.0240 S13: 0.1441 REMARK 3 S21: 0.0891 S22: -0.0833 S23: -0.2323 REMARK 3 S31: -0.1318 S32: 0.3146 S33: 0.0682 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 105:164 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.628 24.856 -2.955 REMARK 3 T TENSOR REMARK 3 T11: 0.2380 T22: 0.1564 REMARK 3 T33: 0.2583 T12: 0.0039 REMARK 3 T13: -0.0096 T23: -0.0490 REMARK 3 L TENSOR REMARK 3 L11: 1.4609 L22: 1.5113 REMARK 3 L33: 4.6020 L12: -0.2534 REMARK 3 L13: 0.0977 L23: -0.7880 REMARK 3 S TENSOR REMARK 3 S11: 0.0549 S12: -0.2221 S13: 0.5527 REMARK 3 S21: 0.3203 S22: 0.0780 S23: 0.0381 REMARK 3 S31: -0.5956 S32: 0.1150 S33: -0.0058 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 165:283 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.805 -1.074 -16.922 REMARK 3 T TENSOR REMARK 3 T11: 0.1453 T22: 0.1634 REMARK 3 T33: 0.1000 T12: 0.0008 REMARK 3 T13: -0.0024 T23: -0.0382 REMARK 3 L TENSOR REMARK 3 L11: 3.6318 L22: 2.7878 REMARK 3 L33: 0.2913 L12: 2.1719 REMARK 3 L13: -0.6174 L23: -0.5214 REMARK 3 S TENSOR REMARK 3 S11: 0.0067 S12: 0.0750 S13: -0.0357 REMARK 3 S21: 0.1049 S22: -0.0394 S23: 0.1492 REMARK 3 S31: 0.0231 S32: -0.0365 S33: 0.0262 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN B AND RESID 1:100 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.626 -8.297 -4.989 REMARK 3 T TENSOR REMARK 3 T11: 0.2772 T22: 0.1748 REMARK 3 T33: 0.1429 T12: -0.0292 REMARK 3 T13: 0.0084 T23: 0.0168 REMARK 3 L TENSOR REMARK 3 L11: 2.4145 L22: 3.3010 REMARK 3 L33: 2.0179 L12: -0.0680 REMARK 3 L13: 1.0268 L23: 0.1660 REMARK 3 S TENSOR REMARK 3 S11: 0.2513 S12: -0.0789 S13: -0.3312 REMARK 3 S21: 0.0988 S22: -0.1767 S23: -0.1632 REMARK 3 S31: 0.5946 S32: -0.1497 S33: -0.0381 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8GLF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAR-23. REMARK 100 THE DEPOSITION ID IS D_1000273132. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9376 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27135 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 48.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 11.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.2 REMARK 200 DATA REDUNDANCY IN SHELL : 10.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 6D64 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28% PEG3350, 0.2 M SODIUM IODIDE, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.78500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.66000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.99000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.66000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.78500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.99000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, D, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 2 REMARK 465 ALA A 3 REMARK 465 ASP A 284 REMARK 465 ILE A 285 REMARK 465 PHE A 286 REMARK 465 GLU A 287 REMARK 465 ALA A 288 REMARK 465 GLN A 289 REMARK 465 LYS A 290 REMARK 465 ILE A 291 REMARK 465 GLU A 292 REMARK 465 TRP A 293 REMARK 465 HIS A 294 REMARK 465 GLU A 295 REMARK 465 HIS A 296 REMARK 465 HIS A 297 REMARK 465 HIS A 298 REMARK 465 HIS A 299 REMARK 465 HIS A 300 REMARK 465 HIS A 301 REMARK 465 MET B 101 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 91 CG CD CE NZ REMARK 470 GLU A 224 CG CD OE1 OE2 REMARK 470 GLU A 269 CG CD OE1 OE2 REMARK 470 LYS B 2 CG CD CE NZ REMARK 470 LYS B 50 CG CD CE NZ REMARK 470 GLU B 71 CG CD OE1 OE2 REMARK 470 GLU B 76 CG CD OE1 OE2 REMARK 470 LYS B 77 CG CD CE NZ REMARK 470 LYS B 96 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 598 O HOH A 657 2.09 REMARK 500 O HOH B 329 O HOH B 345 2.09 REMARK 500 O HOH B 344 O HOH B 357 2.11 REMARK 500 OE2 GLU A 68 NH1 ARG A 71 2.14 REMARK 500 O ARG B 99 O HOH B 301 2.17 REMARK 500 O THR B 6 O HOH B 302 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 533 O HOH B 304 4445 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 33 -116.25 44.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 6UL A 404 DBREF 8GLF A 2 278 UNP P29016 CD1B_HUMAN 20 296 DBREF 8GLF B 3 101 UNP P61769 B2MG_HUMAN 21 119 SEQADV 8GLF GLY A 279 UNP P29016 EXPRESSION TAG SEQADV 8GLF SER A 280 UNP P29016 EXPRESSION TAG SEQADV 8GLF GLY A 281 UNP P29016 EXPRESSION TAG SEQADV 8GLF LEU A 282 UNP P29016 EXPRESSION TAG SEQADV 8GLF ASN A 283 UNP P29016 EXPRESSION TAG SEQADV 8GLF ASP A 284 UNP P29016 EXPRESSION TAG SEQADV 8GLF ILE A 285 UNP P29016 EXPRESSION TAG SEQADV 8GLF PHE A 286 UNP P29016 EXPRESSION TAG SEQADV 8GLF GLU A 287 UNP P29016 EXPRESSION TAG SEQADV 8GLF ALA A 288 UNP P29016 EXPRESSION TAG SEQADV 8GLF GLN A 289 UNP P29016 EXPRESSION TAG SEQADV 8GLF LYS A 290 UNP P29016 EXPRESSION TAG SEQADV 8GLF ILE A 291 UNP P29016 EXPRESSION TAG SEQADV 8GLF GLU A 292 UNP P29016 EXPRESSION TAG SEQADV 8GLF TRP A 293 UNP P29016 EXPRESSION TAG SEQADV 8GLF HIS A 294 UNP P29016 EXPRESSION TAG SEQADV 8GLF GLU A 295 UNP P29016 EXPRESSION TAG SEQADV 8GLF HIS A 296 UNP P29016 EXPRESSION TAG SEQADV 8GLF HIS A 297 UNP P29016 EXPRESSION TAG SEQADV 8GLF HIS A 298 UNP P29016 EXPRESSION TAG SEQADV 8GLF HIS A 299 UNP P29016 EXPRESSION TAG SEQADV 8GLF HIS A 300 UNP P29016 EXPRESSION TAG SEQADV 8GLF HIS A 301 UNP P29016 EXPRESSION TAG SEQADV 8GLF PRO B 1 UNP P61769 EXPRESSION TAG SEQADV 8GLF LYS B 2 UNP P61769 EXPRESSION TAG SEQRES 1 A 300 HIS ALA PHE GLN GLY PRO THR SER PHE HIS VAL ILE GLN SEQRES 2 A 300 THR SER SER PHE THR ASN SER THR TRP ALA GLN THR GLN SEQRES 3 A 300 GLY SER GLY TRP LEU ASP ASP LEU GLN ILE HIS GLY TRP SEQRES 4 A 300 ASP SER ASP SER GLY THR ALA ILE PHE LEU LYS PRO TRP SEQRES 5 A 300 SER LYS GLY ASN PHE SER ASP LYS GLU VAL ALA GLU LEU SEQRES 6 A 300 GLU GLU ILE PHE ARG VAL TYR ILE PHE GLY PHE ALA ARG SEQRES 7 A 300 GLU VAL GLN ASP PHE ALA GLY ASP PHE GLN MET LYS TYR SEQRES 8 A 300 PRO PHE GLU ILE GLN GLY ILE ALA GLY CYS GLU LEU HIS SEQRES 9 A 300 SER GLY GLY ALA ILE VAL SER PHE LEU ARG GLY ALA LEU SEQRES 10 A 300 GLY GLY LEU ASP PHE LEU SER VAL LYS ASN ALA SER CYS SEQRES 11 A 300 VAL PRO SER PRO GLU GLY GLY SER ARG ALA GLN LYS PHE SEQRES 12 A 300 CYS ALA LEU ILE ILE GLN TYR GLN GLY ILE MET GLU THR SEQRES 13 A 300 VAL ARG ILE LEU LEU TYR GLU THR CYS PRO ARG TYR LEU SEQRES 14 A 300 LEU GLY VAL LEU ASN ALA GLY LYS ALA ASP LEU GLN ARG SEQRES 15 A 300 GLN VAL LYS PRO GLU ALA TRP LEU SER SER GLY PRO SER SEQRES 16 A 300 PRO GLY PRO GLY ARG LEU GLN LEU VAL CYS HIS VAL SER SEQRES 17 A 300 GLY PHE TYR PRO LYS PRO VAL TRP VAL MET TRP MET ARG SEQRES 18 A 300 GLY GLU GLN GLU GLN GLN GLY THR GLN LEU GLY ASP ILE SEQRES 19 A 300 LEU PRO ASN ALA ASN TRP THR TRP TYR LEU ARG ALA THR SEQRES 20 A 300 LEU ASP VAL ALA ASP GLY GLU ALA ALA GLY LEU SER CYS SEQRES 21 A 300 ARG VAL LYS HIS SER SER LEU GLU GLY GLN ASP ILE ILE SEQRES 22 A 300 LEU TYR TRP ARG GLY SER GLY LEU ASN ASP ILE PHE GLU SEQRES 23 A 300 ALA GLN LYS ILE GLU TRP HIS GLU HIS HIS HIS HIS HIS SEQRES 24 A 300 HIS SEQRES 1 B 101 PRO LYS ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER SEQRES 2 B 101 ARG HIS PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN SEQRES 3 B 101 CYS TYR VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL SEQRES 4 B 101 ASP LEU LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU SEQRES 5 B 101 HIS SER ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR SEQRES 6 B 101 LEU LEU TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP SEQRES 7 B 101 GLU TYR ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN SEQRES 8 B 101 PRO LYS ILE VAL LYS TRP ASP ARG ASP MET HET NAG D 1 14 HET NAG D 2 14 HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET MAN C 5 11 HET FUC C 6 10 HET FUC C 7 10 HET EDO A 401 4 HET EDO A 402 4 HET 3LY A 403 48 HET 6UL A 404 26 HET CL A 405 1 HET CL A 406 1 HET CL A 407 1 HET CL A 408 1 HET IOD A 409 1 HET IOD B 201 1 HET NI B 202 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM EDO 1,2-ETHANEDIOL HETNAM 3LY [(~{Z},2~{R},3~{S})-2-(HEXADECANOYLAMINO)-3-OXIDANYL- HETNAM 2 3LY OCTADEC-4-ENYL] 2-(TRIMETHYL-$L^{4}-AZANYL)ETHYL HETNAM 3 3LY HYDROGEN PHOSPHATE HETNAM 6UL TETRACOSYL PALMITATE HETNAM CL CHLORIDE ION HETNAM IOD IODIDE ION HETNAM NI NICKEL (II) ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 NAG 4(C8 H15 N O6) FORMUL 4 BMA C6 H12 O6 FORMUL 4 MAN 2(C6 H12 O6) FORMUL 4 FUC 2(C6 H12 O5) FORMUL 5 EDO 2(C2 H6 O2) FORMUL 7 3LY C39 H80 N2 O6 P 1+ FORMUL 8 6UL C40 H80 O2 FORMUL 9 CL 4(CL 1-) FORMUL 13 IOD 2(I 1-) FORMUL 15 NI NI 2+ FORMUL 16 HOH *234(H2 O) HELIX 1 AA1 SER A 59 ALA A 85 1 27 HELIX 2 AA2 GLY A 137 ILE A 149 1 13 HELIX 3 AA3 GLY A 153 GLU A 164 1 12 HELIX 4 AA4 GLU A 164 GLY A 177 1 14 HELIX 5 AA5 GLY A 177 GLN A 182 1 6 HELIX 6 AA6 HIS A 265 GLU A 269 5 5 SHEET 1 AA1 8 THR A 46 PHE A 49 0 SHEET 2 AA1 8 LEU A 35 ASP A 41 -1 N GLY A 39 O ILE A 48 SHEET 3 AA1 8 TRP A 23 LEU A 32 -1 N LEU A 32 O LEU A 35 SHEET 4 AA1 8 SER A 9 ASN A 20 -1 N HIS A 11 O TRP A 31 SHEET 5 AA1 8 PHE A 94 LEU A 104 -1 O ILE A 96 N SER A 16 SHEET 6 AA1 8 ILE A 110 LEU A 118 -1 O ALA A 117 N GLN A 97 SHEET 7 AA1 8 LEU A 121 LYS A 127 -1 O PHE A 123 N GLY A 116 SHEET 8 AA1 8 SER A 130 PRO A 133 -1 O VAL A 132 N SER A 125 SHEET 1 AA2 4 GLU A 188 SER A 192 0 SHEET 2 AA2 4 ARG A 201 PHE A 211 -1 O HIS A 207 N TRP A 190 SHEET 3 AA2 4 THR A 242 ALA A 252 -1 O VAL A 251 N LEU A 202 SHEET 4 AA2 4 GLN A 231 LEU A 232 -1 N GLN A 231 O THR A 248 SHEET 1 AA3 4 GLU A 188 SER A 192 0 SHEET 2 AA3 4 ARG A 201 PHE A 211 -1 O HIS A 207 N TRP A 190 SHEET 3 AA3 4 THR A 242 ALA A 252 -1 O VAL A 251 N LEU A 202 SHEET 4 AA3 4 LEU A 236 ASN A 238 -1 N LEU A 236 O TYR A 244 SHEET 1 AA4 4 GLN A 225 GLU A 226 0 SHEET 2 AA4 4 TRP A 217 ARG A 222 -1 N ARG A 222 O GLN A 225 SHEET 3 AA4 4 LEU A 259 LYS A 264 -1 O SER A 260 N MET A 221 SHEET 4 AA4 4 ILE A 273 TYR A 276 -1 O LEU A 275 N CYS A 261 SHEET 1 AA5 4 LYS B 8 SER B 13 0 SHEET 2 AA5 4 ASN B 23 PHE B 32 -1 O ASN B 26 N TYR B 12 SHEET 3 AA5 4 PHE B 64 PHE B 72 -1 O THR B 70 N LEU B 25 SHEET 4 AA5 4 GLU B 52 HIS B 53 -1 N GLU B 52 O TYR B 69 SHEET 1 AA6 4 LYS B 8 SER B 13 0 SHEET 2 AA6 4 ASN B 23 PHE B 32 -1 O ASN B 26 N TYR B 12 SHEET 3 AA6 4 PHE B 64 PHE B 72 -1 O THR B 70 N LEU B 25 SHEET 4 AA6 4 SER B 57 PHE B 58 -1 N SER B 57 O TYR B 65 SHEET 1 AA7 4 GLU B 46 ARG B 47 0 SHEET 2 AA7 4 GLU B 38 LYS B 43 -1 N LYS B 43 O GLU B 46 SHEET 3 AA7 4 TYR B 80 ASN B 85 -1 O ARG B 83 N ASP B 40 SHEET 4 AA7 4 LYS B 93 LYS B 96 -1 O LYS B 93 N VAL B 84 SSBOND 1 CYS A 102 CYS A 166 1555 1555 2.10 SSBOND 2 CYS A 131 CYS A 145 1555 1555 2.05 SSBOND 3 CYS A 206 CYS A 261 1555 1555 2.03 SSBOND 4 CYS B 27 CYS B 82 1555 1555 2.02 LINK ND2 ASN A 20 C1 NAG D 1 1555 1555 1.45 LINK ND2 ASN A 57 C1 NAG C 1 1555 1555 1.43 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.43 LINK O3 NAG C 1 C1 FUC C 6 1555 1555 1.46 LINK O6 NAG C 1 C1 FUC C 7 1555 1555 1.43 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.44 LINK O3 BMA C 3 C1 MAN C 4 1555 1555 1.46 LINK O6 BMA C 3 C1 MAN C 5 1555 1555 1.44 CISPEP 1 TYR A 92 PRO A 93 0 -3.64 CISPEP 2 TYR A 212 PRO A 213 0 -1.71 CISPEP 3 HIS B 33 PRO B 34 0 0.06 CRYST1 57.570 77.980 91.320 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017370 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012824 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010951 0.00000 CONECT 134 3061 CONECT 427 3089 CONECT 810 1306 CONECT 1023 1130 CONECT 1130 1023 CONECT 1306 810 CONECT 1606 2064 CONECT 2064 1606 CONECT 2461 2908 CONECT 2908 2461 CONECT 3061 134 3062 3072 CONECT 3062 3061 3063 3069 CONECT 3063 3062 3064 3070 CONECT 3064 3063 3065 3071 CONECT 3065 3064 3066 3072 CONECT 3066 3065 3073 CONECT 3067 3068 3069 3074 CONECT 3068 3067 CONECT 3069 3062 3067 CONECT 3070 3063 CONECT 3071 3064 3075 CONECT 3072 3061 3065 CONECT 3073 3066 CONECT 3074 3067 CONECT 3075 3071 3076 3086 CONECT 3076 3075 3077 3083 CONECT 3077 3076 3078 3084 CONECT 3078 3077 3079 3085 CONECT 3079 3078 3080 3086 CONECT 3080 3079 3087 CONECT 3081 3082 3083 3088 CONECT 3082 3081 CONECT 3083 3076 3081 CONECT 3084 3077 CONECT 3085 3078 CONECT 3086 3075 3079 CONECT 3087 3080 CONECT 3088 3081 CONECT 3089 427 3090 3100 CONECT 3090 3089 3091 3097 CONECT 3091 3090 3092 3098 CONECT 3092 3091 3093 3099 CONECT 3093 3092 3094 3100 CONECT 3094 3093 3101 CONECT 3095 3096 3097 3102 CONECT 3096 3095 CONECT 3097 3090 3095 CONECT 3098 3091 3150 CONECT 3099 3092 3103 CONECT 3100 3089 3093 CONECT 3101 3094 3160 CONECT 3102 3095 CONECT 3103 3099 3104 3114 CONECT 3104 3103 3105 3111 CONECT 3105 3104 3106 3112 CONECT 3106 3105 3107 3113 CONECT 3107 3106 3108 3114 CONECT 3108 3107 3115 CONECT 3109 3110 3111 3116 CONECT 3110 3109 CONECT 3111 3104 3109 CONECT 3112 3105 CONECT 3113 3106 3117 CONECT 3114 3103 3107 CONECT 3115 3108 CONECT 3116 3109 CONECT 3117 3113 3118 3126 CONECT 3118 3117 3119 3123 CONECT 3119 3118 3120 3124 CONECT 3120 3119 3121 3125 CONECT 3121 3120 3122 3126 CONECT 3122 3121 3127 CONECT 3123 3118 CONECT 3124 3119 3128 CONECT 3125 3120 CONECT 3126 3117 3121 CONECT 3127 3122 3139 CONECT 3128 3124 3129 3137 CONECT 3129 3128 3130 3134 CONECT 3130 3129 3131 3135 CONECT 3131 3130 3132 3136 CONECT 3132 3131 3133 3137 CONECT 3133 3132 3138 CONECT 3134 3129 CONECT 3135 3130 CONECT 3136 3131 CONECT 3137 3128 3132 CONECT 3138 3133 CONECT 3139 3127 3140 3148 CONECT 3140 3139 3141 3145 CONECT 3141 3140 3142 3146 CONECT 3142 3141 3143 3147 CONECT 3143 3142 3144 3148 CONECT 3144 3143 3149 CONECT 3145 3140 CONECT 3146 3141 CONECT 3147 3142 CONECT 3148 3139 3143 CONECT 3149 3144 CONECT 3150 3098 3151 3159 CONECT 3151 3150 3152 3156 CONECT 3152 3151 3153 3157 CONECT 3153 3152 3154 3158 CONECT 3154 3153 3155 3159 CONECT 3155 3154 CONECT 3156 3151 CONECT 3157 3152 CONECT 3158 3153 CONECT 3159 3150 3154 CONECT 3160 3101 3161 3169 CONECT 3161 3160 3162 3166 CONECT 3162 3161 3163 3167 CONECT 3163 3162 3164 3168 CONECT 3164 3163 3165 3169 CONECT 3165 3164 CONECT 3166 3161 CONECT 3167 3162 CONECT 3168 3163 CONECT 3169 3160 3164 CONECT 3170 3171 3172 CONECT 3171 3170 CONECT 3172 3170 3173 CONECT 3173 3172 CONECT 3174 3175 3176 CONECT 3175 3174 CONECT 3176 3174 3177 CONECT 3177 3176 CONECT 3178 3188 3189 CONECT 3179 3219 3220 CONECT 3180 3208 CONECT 3181 3208 CONECT 3182 3183 CONECT 3183 3182 3184 CONECT 3184 3183 3185 CONECT 3185 3184 3186 CONECT 3186 3185 3187 CONECT 3187 3186 3188 CONECT 3188 3178 3187 CONECT 3189 3178 3190 CONECT 3190 3189 3191 CONECT 3191 3190 3192 CONECT 3192 3191 3193 CONECT 3193 3192 3194 CONECT 3194 3193 3195 CONECT 3195 3194 3196 CONECT 3196 3195 3197 3198 CONECT 3197 3196 CONECT 3198 3196 3199 CONECT 3199 3198 3200 3210 CONECT 3200 3199 3201 CONECT 3201 3200 3202 CONECT 3202 3201 3203 3204 3205 CONECT 3203 3202 CONECT 3204 3202 CONECT 3205 3202 3206 CONECT 3206 3205 3207 CONECT 3207 3206 3208 CONECT 3208 3180 3181 3207 3209 CONECT 3209 3208 CONECT 3210 3199 3211 3212 CONECT 3211 3210 CONECT 3212 3210 3213 CONECT 3213 3212 3214 CONECT 3214 3213 3215 CONECT 3215 3214 3216 CONECT 3216 3215 3217 CONECT 3217 3216 3218 CONECT 3218 3217 3219 CONECT 3219 3179 3218 CONECT 3220 3179 3221 CONECT 3221 3220 3222 CONECT 3222 3221 3223 CONECT 3223 3222 3224 CONECT 3224 3223 3225 CONECT 3225 3224 CONECT 3226 3227 CONECT 3227 3226 3228 CONECT 3228 3227 3229 CONECT 3229 3228 3230 CONECT 3230 3229 3231 CONECT 3231 3230 3232 CONECT 3232 3231 3233 CONECT 3233 3232 3234 CONECT 3234 3233 3235 CONECT 3235 3234 3236 CONECT 3236 3235 3237 CONECT 3237 3236 3238 CONECT 3238 3237 3239 CONECT 3239 3238 3240 CONECT 3240 3239 3241 CONECT 3241 3240 3242 CONECT 3242 3241 3243 CONECT 3243 3242 3244 CONECT 3244 3243 3245 3246 CONECT 3245 3244 CONECT 3246 3244 3247 CONECT 3247 3246 3248 CONECT 3248 3247 3249 CONECT 3249 3248 3250 CONECT 3250 3249 3251 CONECT 3251 3250 MASTER 363 0 20 6 32 0 0 6 3417 2 201 32 END