HEADER IMMUNE SYSTEM 22-MAR-23 8GLF TITLE CRYSTAL STRUCTURE OF HUMAN CD1B IN COMPLEX WITH SPHINGOMYELIN C34:2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: T-CELL SURFACE GLYCOPROTEIN CD1B; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CD1B; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HI5; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PFASTBAC; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 GENE: B2M, CDABP0092, HDCMA22P; SOURCE 17 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 18 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 20 EXPRESSION_SYSTEM_CELL_LINE: HI5; SOURCE 21 EXPRESSION_SYSTEM_VECTOR_TYPE: BACMID; SOURCE 22 EXPRESSION_SYSTEM_PLASMID: PFASTBAC KEYWDS IMMUNE SYSTEM, LIPID, CD1B, SPHINGOMYELIN EXPDTA X-RAY DIFFRACTION AUTHOR A.SHAHINE REVDAT 2 01-MAY-24 8GLF 1 JRNL REVDAT 1 20-SEP-23 8GLF 0 JRNL AUTH S.HUANG,A.SHAHINE,T.Y.CHENG,Y.L.CHEN,S.W.NG,G.R.BALAJI, JRNL AUTH 2 R.FARQUHAR,S.GRAS,C.S.HARDMAN,J.D.ALTMAN,N.TAHIRI, JRNL AUTH 3 A.J.MINNAARD,G.S.OGG,J.A.MAYFIELD,J.ROSSJOHN,D.B.MOODY JRNL TITL CD1 LIPIDOMES REVEAL LIPID-BINDING MOTIFS AND SIZE-BASED JRNL TITL 2 ANTIGEN-DISPLAY MECHANISMS. JRNL REF CELL V. 186 4583 2023 JRNL REFN ISSN 1097-4172 JRNL PMID 37725977 JRNL DOI 10.1016/J.CELL.2023.08.022 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 3 NUMBER OF REFLECTIONS : 27096 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1383 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.8580 - 4.3067 0.96 2772 135 0.1574 0.1925 REMARK 3 2 4.3067 - 3.4192 0.96 2648 141 0.1405 0.1878 REMARK 3 3 3.4192 - 2.9872 0.96 2608 148 0.1670 0.2231 REMARK 3 4 2.9872 - 2.7142 0.96 2560 147 0.1968 0.2692 REMARK 3 5 2.7142 - 2.5197 0.96 2566 130 0.1901 0.2399 REMARK 3 6 2.5197 - 2.3712 0.96 2549 157 0.1916 0.2600 REMARK 3 7 2.3712 - 2.2525 0.95 2536 122 0.1948 0.2654 REMARK 3 8 2.2525 - 2.1544 0.95 2519 145 0.2042 0.2621 REMARK 3 9 2.1544 - 2.0715 0.94 2514 123 0.2262 0.3018 REMARK 3 10 2.0715 - 2.0000 0.92 2441 135 0.2318 0.3094 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 4:104 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.141 12.346 -8.812 REMARK 3 T TENSOR REMARK 3 T11: 0.0982 T22: 0.1412 REMARK 3 T33: 0.1882 T12: 0.0076 REMARK 3 T13: -0.0043 T23: 0.0137 REMARK 3 L TENSOR REMARK 3 L11: 1.6767 L22: 1.9109 REMARK 3 L33: 2.8728 L12: 0.1593 REMARK 3 L13: 0.1714 L23: -0.5773 REMARK 3 S TENSOR REMARK 3 S11: -0.0292 S12: -0.0240 S13: 0.1441 REMARK 3 S21: 0.0891 S22: -0.0833 S23: -0.2323 REMARK 3 S31: -0.1318 S32: 0.3146 S33: 0.0682 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 105:164 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.628 24.856 -2.955 REMARK 3 T TENSOR REMARK 3 T11: 0.2380 T22: 0.1564 REMARK 3 T33: 0.2583 T12: 0.0039 REMARK 3 T13: -0.0096 T23: -0.0490 REMARK 3 L TENSOR REMARK 3 L11: 1.4609 L22: 1.5113 REMARK 3 L33: 4.6020 L12: -0.2534 REMARK 3 L13: 0.0977 L23: -0.7880 REMARK 3 S TENSOR REMARK 3 S11: 0.0549 S12: -0.2221 S13: 0.5527 REMARK 3 S21: 0.3203 S22: 0.0780 S23: 0.0381 REMARK 3 S31: -0.5956 S32: 0.1150 S33: -0.0058 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 165:283 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.805 -1.074 -16.922 REMARK 3 T TENSOR REMARK 3 T11: 0.1453 T22: 0.1634 REMARK 3 T33: 0.1000 T12: 0.0008 REMARK 3 T13: -0.0024 T23: -0.0382 REMARK 3 L TENSOR REMARK 3 L11: 3.6318 L22: 2.7878 REMARK 3 L33: 0.2913 L12: 2.1719 REMARK 3 L13: -0.6174 L23: -0.5214 REMARK 3 S TENSOR REMARK 3 S11: 0.0067 S12: 0.0750 S13: -0.0357 REMARK 3 S21: 0.1049 S22: -0.0394 S23: 0.1492 REMARK 3 S31: 0.0231 S32: -0.0365 S33: 0.0262 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN B AND RESID 1:100 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.626 -8.297 -4.989 REMARK 3 T TENSOR REMARK 3 T11: 0.2772 T22: 0.1748 REMARK 3 T33: 0.1429 T12: -0.0292 REMARK 3 T13: 0.0084 T23: 0.0168 REMARK 3 L TENSOR REMARK 3 L11: 2.4145 L22: 3.3010 REMARK 3 L33: 2.0179 L12: -0.0680 REMARK 3 L13: 1.0268 L23: 0.1660 REMARK 3 S TENSOR REMARK 3 S11: 0.2513 S12: -0.0789 S13: -0.3312 REMARK 3 S21: 0.0988 S22: -0.1767 S23: -0.1632 REMARK 3 S31: 0.5946 S32: -0.1497 S33: -0.0381 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8GLF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAR-23. REMARK 100 THE DEPOSITION ID IS D_1000273132. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9376 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27135 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 48.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 11.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.2 REMARK 200 DATA REDUNDANCY IN SHELL : 10.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 6D64 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28% PEG3350, 0.2 M SODIUM IODIDE, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.78500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.66000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.99000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.66000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.78500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.99000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, D, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 2 REMARK 465 ALA A 3 REMARK 465 ASP A 284 REMARK 465 ILE A 285 REMARK 465 PHE A 286 REMARK 465 GLU A 287 REMARK 465 ALA A 288 REMARK 465 GLN A 289 REMARK 465 LYS A 290 REMARK 465 ILE A 291 REMARK 465 GLU A 292 REMARK 465 TRP A 293 REMARK 465 HIS A 294 REMARK 465 GLU A 295 REMARK 465 HIS A 296 REMARK 465 HIS A 297 REMARK 465 HIS A 298 REMARK 465 HIS A 299 REMARK 465 HIS A 300 REMARK 465 HIS A 301 REMARK 465 MET B 101 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 91 CG CD CE NZ REMARK 470 GLU A 224 CG CD OE1 OE2 REMARK 470 GLU A 269 CG CD OE1 OE2 REMARK 470 LYS B 2 CG CD CE NZ REMARK 470 LYS B 50 CG CD CE NZ REMARK 470 GLU B 71 CG CD OE1 OE2 REMARK 470 GLU B 76 CG CD OE1 OE2 REMARK 470 LYS B 77 CG CD CE NZ REMARK 470 LYS B 96 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 598 O HOH A 657 2.09 REMARK 500 O HOH B 329 O HOH B 345 2.09 REMARK 500 O HOH B 344 O HOH B 357 2.11 REMARK 500 OE2 GLU A 68 NH1 ARG A 71 2.14 REMARK 500 O ARG B 99 O HOH B 301 2.17 REMARK 500 O THR B 6 O HOH B 302 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 533 O HOH B 304 4445 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 33 -116.25 44.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 6UL A 404 DBREF 8GLF A 2 278 UNP P29016 CD1B_HUMAN 20 296 DBREF 8GLF B 3 101 UNP P61769 B2MG_HUMAN 21 119 SEQADV 8GLF GLY A 279 UNP P29016 EXPRESSION TAG SEQADV 8GLF SER A 280 UNP P29016 EXPRESSION TAG SEQADV 8GLF GLY A 281 UNP P29016 EXPRESSION TAG SEQADV 8GLF LEU A 282 UNP P29016 EXPRESSION TAG SEQADV 8GLF ASN A 283 UNP P29016 EXPRESSION TAG SEQADV 8GLF ASP A 284 UNP P29016 EXPRESSION TAG SEQADV 8GLF ILE A 285 UNP P29016 EXPRESSION TAG SEQADV 8GLF PHE A 286 UNP P29016 EXPRESSION TAG SEQADV 8GLF GLU A 287 UNP P29016 EXPRESSION TAG SEQADV 8GLF ALA A 288 UNP P29016 EXPRESSION TAG SEQADV 8GLF GLN A 289 UNP P29016 EXPRESSION TAG SEQADV 8GLF LYS A 290 UNP P29016 EXPRESSION TAG SEQADV 8GLF ILE A 291 UNP P29016 EXPRESSION TAG SEQADV 8GLF GLU A 292 UNP P29016 EXPRESSION TAG SEQADV 8GLF TRP A 293 UNP P29016 EXPRESSION TAG SEQADV 8GLF HIS A 294 UNP P29016 EXPRESSION TAG SEQADV 8GLF GLU A 295 UNP P29016 EXPRESSION TAG SEQADV 8GLF HIS A 296 UNP P29016 EXPRESSION TAG SEQADV 8GLF HIS A 297 UNP P29016 EXPRESSION TAG SEQADV 8GLF HIS A 298 UNP P29016 EXPRESSION TAG SEQADV 8GLF HIS A 299 UNP P29016 EXPRESSION TAG SEQADV 8GLF HIS A 300 UNP P29016 EXPRESSION TAG SEQADV 8GLF HIS A 301 UNP P29016 EXPRESSION TAG SEQADV 8GLF PRO B 1 UNP P61769 EXPRESSION TAG SEQADV 8GLF LYS B 2 UNP P61769 EXPRESSION TAG SEQRES 1 A 300 HIS ALA PHE GLN GLY PRO THR SER PHE HIS VAL ILE GLN SEQRES 2 A 300 THR SER SER PHE THR ASN SER THR TRP ALA GLN THR GLN SEQRES 3 A 300 GLY SER GLY TRP LEU ASP ASP LEU GLN ILE HIS GLY TRP SEQRES 4 A 300 ASP SER ASP SER GLY THR ALA ILE PHE LEU LYS PRO TRP SEQRES 5 A 300 SER LYS GLY ASN PHE SER ASP LYS GLU VAL ALA GLU LEU SEQRES 6 A 300 GLU GLU ILE PHE ARG VAL TYR ILE PHE GLY PHE ALA ARG SEQRES 7 A 300 GLU VAL GLN ASP PHE ALA GLY ASP PHE GLN MET LYS TYR SEQRES 8 A 300 PRO PHE GLU ILE GLN GLY ILE ALA GLY CYS GLU LEU HIS SEQRES 9 A 300 SER GLY GLY ALA ILE VAL SER PHE LEU ARG GLY ALA LEU SEQRES 10 A 300 GLY GLY LEU ASP PHE LEU SER VAL LYS ASN ALA SER CYS SEQRES 11 A 300 VAL PRO SER PRO GLU GLY GLY SER ARG ALA GLN LYS PHE SEQRES 12 A 300 CYS ALA LEU ILE ILE GLN TYR GLN GLY ILE MET GLU THR SEQRES 13 A 300 VAL ARG ILE LEU LEU TYR GLU THR CYS PRO ARG TYR LEU SEQRES 14 A 300 LEU GLY VAL LEU ASN ALA GLY LYS ALA ASP LEU GLN ARG SEQRES 15 A 300 GLN VAL LYS PRO GLU ALA TRP LEU SER SER GLY PRO SER SEQRES 16 A 300 PRO GLY PRO GLY ARG LEU GLN LEU VAL CYS HIS VAL SER SEQRES 17 A 300 GLY PHE TYR PRO LYS PRO VAL TRP VAL MET TRP MET ARG SEQRES 18 A 300 GLY GLU GLN GLU GLN GLN GLY THR GLN LEU GLY ASP ILE SEQRES 19 A 300 LEU PRO ASN ALA ASN TRP THR TRP TYR LEU ARG ALA THR SEQRES 20 A 300 LEU ASP VAL ALA ASP GLY GLU ALA ALA GLY LEU SER CYS SEQRES 21 A 300 ARG VAL LYS HIS SER SER LEU GLU GLY GLN ASP ILE ILE SEQRES 22 A 300 LEU TYR TRP ARG GLY SER GLY LEU ASN ASP ILE PHE GLU SEQRES 23 A 300 ALA GLN LYS ILE GLU TRP HIS GLU HIS HIS HIS HIS HIS SEQRES 24 A 300 HIS SEQRES 1 B 101 PRO LYS ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER SEQRES 2 B 101 ARG HIS PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN SEQRES 3 B 101 CYS TYR VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL SEQRES 4 B 101 ASP LEU LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU SEQRES 5 B 101 HIS SER ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR SEQRES 6 B 101 LEU LEU TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP SEQRES 7 B 101 GLU TYR ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN SEQRES 8 B 101 PRO LYS ILE VAL LYS TRP ASP ARG ASP MET HET NAG D 1 14 HET NAG D 2 14 HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET MAN C 5 11 HET FUC C 6 10 HET FUC C 7 10 HET EDO A 401 4 HET EDO A 402 4 HET 3LY A 403 48 HET 6UL A 404 26 HET CL A 405 1 HET CL A 406 1 HET CL A 407 1 HET CL A 408 1 HET IOD A 409 1 HET IOD B 201 1 HET NI B 202 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM EDO 1,2-ETHANEDIOL HETNAM 3LY [(~{Z},2~{R},3~{S})-2-(HEXADECANOYLAMINO)-3-OXIDANYL- HETNAM 2 3LY OCTADEC-4-ENYL] 2-(TRIMETHYL-$L^{4}-AZANYL)ETHYL HETNAM 3 3LY HYDROGEN PHOSPHATE HETNAM 6UL TETRACOSYL PALMITATE HETNAM CL CHLORIDE ION HETNAM IOD IODIDE ION HETNAM NI NICKEL (II) ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 NAG 4(C8 H15 N O6) FORMUL 4 BMA C6 H12 O6 FORMUL 4 MAN 2(C6 H12 O6) FORMUL 4 FUC 2(C6 H12 O5) FORMUL 5 EDO 2(C2 H6 O2) FORMUL 7 3LY C39 H80 N2 O6 P 1+ FORMUL 8 6UL C40 H80 O2 FORMUL 9 CL 4(CL 1-) FORMUL 13 IOD 2(I 1-) FORMUL 15 NI NI 2+ FORMUL 16 HOH *234(H2 O) HELIX 1 AA1 SER A 59 ALA A 85 1 27 HELIX 2 AA2 GLY A 137 ILE A 149 1 13 HELIX 3 AA3 GLY A 153 GLU A 164 1 12 HELIX 4 AA4 GLU A 164 GLY A 177 1 14 HELIX 5 AA5 GLY A 177 GLN A 182 1 6 HELIX 6 AA6 HIS A 265 GLU A 269 5 5 SHEET 1 AA1 8 THR A 46 PHE A 49 0 SHEET 2 AA1 8 LEU A 35 ASP A 41 -1 N GLY A 39 O ILE A 48 SHEET 3 AA1 8 TRP A 23 LEU A 32 -1 N LEU A 32 O LEU A 35 SHEET 4 AA1 8 SER A 9 ASN A 20 -1 N HIS A 11 O TRP A 31 SHEET 5 AA1 8 PHE A 94 LEU A 104 -1 O ILE A 96 N SER A 16 SHEET 6 AA1 8 ILE A 110 LEU A 118 -1 O ALA A 117 N GLN A 97 SHEET 7 AA1 8 LEU A 121 LYS A 127 -1 O PHE A 123 N GLY A 116 SHEET 8 AA1 8 SER A 130 PRO A 133 -1 O VAL A 132 N SER A 125 SHEET 1 AA2 4 GLU A 188 SER A 192 0 SHEET 2 AA2 4 ARG A 201 PHE A 211 -1 O HIS A 207 N TRP A 190 SHEET 3 AA2 4 THR A 242 ALA A 252 -1 O VAL A 251 N LEU A 202 SHEET 4 AA2 4 GLN A 231 LEU A 232 -1 N GLN A 231 O THR A 248 SHEET 1 AA3 4 GLU A 188 SER A 192 0 SHEET 2 AA3 4 ARG A 201 PHE A 211 -1 O HIS A 207 N TRP A 190 SHEET 3 AA3 4 THR A 242 ALA A 252 -1 O VAL A 251 N LEU A 202 SHEET 4 AA3 4 LEU A 236 ASN A 238 -1 N LEU A 236 O TYR A 244 SHEET 1 AA4 4 GLN A 225 GLU A 226 0 SHEET 2 AA4 4 TRP A 217 ARG A 222 -1 N ARG A 222 O GLN A 225 SHEET 3 AA4 4 LEU A 259 LYS A 264 -1 O SER A 260 N MET A 221 SHEET 4 AA4 4 ILE A 273 TYR A 276 -1 O LEU A 275 N CYS A 261 SHEET 1 AA5 4 LYS B 8 SER B 13 0 SHEET 2 AA5 4 ASN B 23 PHE B 32 -1 O ASN B 26 N TYR B 12 SHEET 3 AA5 4 PHE B 64 PHE B 72 -1 O THR B 70 N LEU B 25 SHEET 4 AA5 4 GLU B 52 HIS B 53 -1 N GLU B 52 O TYR B 69 SHEET 1 AA6 4 LYS B 8 SER B 13 0 SHEET 2 AA6 4 ASN B 23 PHE B 32 -1 O ASN B 26 N TYR B 12 SHEET 3 AA6 4 PHE B 64 PHE B 72 -1 O THR B 70 N LEU B 25 SHEET 4 AA6 4 SER B 57 PHE B 58 -1 N SER B 57 O TYR B 65 SHEET 1 AA7 4 GLU B 46 ARG B 47 0 SHEET 2 AA7 4 GLU B 38 LYS B 43 -1 N LYS B 43 O GLU B 46 SHEET 3 AA7 4 TYR B 80 ASN B 85 -1 O ARG B 83 N ASP B 40 SHEET 4 AA7 4 LYS B 93 LYS B 96 -1 O LYS B 93 N VAL B 84 SSBOND 1 CYS A 102 CYS A 166 1555 1555 2.10 SSBOND 2 CYS A 131 CYS A 145 1555 1555 2.05 SSBOND 3 CYS A 206 CYS A 261 1555 1555 2.03 SSBOND 4 CYS B 27 CYS B 82 1555 1555 2.02 LINK ND2 ASN A 20 C1 NAG D 1 1555 1555 1.45 LINK ND2 ASN A 57 C1 NAG C 1 1555 1555 1.43 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.43 LINK O3 NAG C 1 C1 FUC C 6 1555 1555 1.46 LINK O6 NAG C 1 C1 FUC C 7 1555 1555 1.43 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.44 LINK O3 BMA C 3 C1 MAN C 4 1555 1555 1.46 LINK O6 BMA C 3 C1 MAN C 5 1555 1555 1.44 CISPEP 1 TYR A 92 PRO A 93 0 -3.64 CISPEP 2 TYR A 212 PRO A 213 0 -1.71 CISPEP 3 HIS B 33 PRO B 34 0 0.06 CRYST1 57.570 77.980 91.320 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017370 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012824 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010951 0.00000