HEADER IMMUNE SYSTEM 22-MAR-23 8GLH TITLE CRYSTAL STRUCTURE OF HUMAN CD1B IN COMPLEX WITH ENDOGENOUS PC C40:5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: T-CELL SURFACE GLYCOPROTEIN CD1B; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CD1B; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HI5; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PFASTBAC; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 GENE: B2M, CDABP0092, HDCMA22P; SOURCE 17 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 18 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 20 EXPRESSION_SYSTEM_CELL_LINE: HI5; SOURCE 21 EXPRESSION_SYSTEM_VECTOR_TYPE: BACMID; SOURCE 22 EXPRESSION_SYSTEM_PLASMID: PFASTBAC KEYWDS ANTIGEN PRESENTATION, LIPID, CD1B, PHOSPHOLIPID, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR R.FARQUHAR,J.ROSSJOHN,A.SHAHINE REVDAT 2 01-MAY-24 8GLH 1 JRNL REVDAT 1 20-SEP-23 8GLH 0 JRNL AUTH S.HUANG,A.SHAHINE,T.Y.CHENG,Y.L.CHEN,S.W.NG,G.R.BALAJI, JRNL AUTH 2 R.FARQUHAR,S.GRAS,C.S.HARDMAN,J.D.ALTMAN,N.TAHIRI, JRNL AUTH 3 A.J.MINNAARD,G.S.OGG,J.A.MAYFIELD,J.ROSSJOHN,D.B.MOODY JRNL TITL CD1 LIPIDOMES REVEAL LIPID-BINDING MOTIFS AND SIZE-BASED JRNL TITL 2 ANTIGEN-DISPLAY MECHANISMS. JRNL REF CELL V. 186 4583 2023 JRNL REFN ISSN 1097-4172 JRNL PMID 37725977 JRNL DOI 10.1016/J.CELL.2023.08.022 REMARK 2 REMARK 2 RESOLUTION. 1.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.13 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 36431 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1820 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.1300 - 4.3018 1.00 2867 133 0.1597 0.2209 REMARK 3 2 4.3018 - 3.4150 1.00 2720 139 0.1356 0.1695 REMARK 3 3 3.4150 - 2.9835 1.00 2706 137 0.1597 0.2229 REMARK 3 4 2.9835 - 2.7108 1.00 2663 138 0.1745 0.2354 REMARK 3 5 2.7108 - 2.5165 1.00 2685 123 0.1698 0.2308 REMARK 3 6 2.5165 - 2.3681 1.00 2667 127 0.1750 0.2200 REMARK 3 7 2.3681 - 2.2496 1.00 2631 146 0.1708 0.2398 REMARK 3 8 2.2496 - 2.1516 1.00 2644 151 0.1757 0.2126 REMARK 3 9 2.1516 - 2.0688 1.00 2602 160 0.1745 0.2574 REMARK 3 10 2.0688 - 1.9974 1.00 2633 135 0.1771 0.2339 REMARK 3 11 1.9974 - 1.9350 1.00 2639 145 0.1925 0.2414 REMARK 3 12 1.9350 - 1.8797 1.00 2587 161 0.2180 0.2695 REMARK 3 13 1.8797 - 1.8302 0.97 2567 125 0.2685 0.3489 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 118 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.1401 -13.3359 8.5055 REMARK 3 T TENSOR REMARK 3 T11: 0.1058 T22: 0.1427 REMARK 3 T33: 0.1885 T12: 0.0013 REMARK 3 T13: 0.0077 T23: 0.0163 REMARK 3 L TENSOR REMARK 3 L11: 1.1854 L22: 1.7658 REMARK 3 L33: 2.6087 L12: 0.0499 REMARK 3 L13: 0.2228 L23: -0.5980 REMARK 3 S TENSOR REMARK 3 S11: -0.0392 S12: 0.0827 S13: -0.0896 REMARK 3 S21: -0.0878 S22: 0.0408 S23: -0.1752 REMARK 3 S31: 0.1099 S32: 0.1686 S33: 0.0045 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 119 THROUGH 175 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.4779 -24.2324 5.1531 REMARK 3 T TENSOR REMARK 3 T11: 0.2038 T22: 0.1838 REMARK 3 T33: 0.2781 T12: 0.0025 REMARK 3 T13: 0.0062 T23: 0.0076 REMARK 3 L TENSOR REMARK 3 L11: 0.8399 L22: 1.3019 REMARK 3 L33: 5.1473 L12: -0.2425 REMARK 3 L13: 0.8830 L23: 0.0264 REMARK 3 S TENSOR REMARK 3 S11: 0.0732 S12: 0.1465 S13: -0.3001 REMARK 3 S21: -0.1191 S22: -0.0434 S23: -0.0296 REMARK 3 S31: 0.7463 S32: 0.2273 S33: -0.0322 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 176 THROUGH 283 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.0697 2.9305 16.3833 REMARK 3 T TENSOR REMARK 3 T11: 0.1578 T22: 0.1177 REMARK 3 T33: 0.1361 T12: -0.0107 REMARK 3 T13: 0.0082 T23: -0.0159 REMARK 3 L TENSOR REMARK 3 L11: 4.3444 L22: 1.7025 REMARK 3 L33: 2.0332 L12: -1.7134 REMARK 3 L13: 1.6575 L23: -0.6326 REMARK 3 S TENSOR REMARK 3 S11: -0.0587 S12: -0.0151 S13: -0.1114 REMARK 3 S21: -0.0784 S22: 0.0210 S23: 0.1412 REMARK 3 S31: -0.1052 S32: -0.0846 S33: 0.0415 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.2166 7.8302 4.7297 REMARK 3 T TENSOR REMARK 3 T11: 0.2340 T22: 0.1438 REMARK 3 T33: 0.1320 T12: 0.0044 REMARK 3 T13: 0.0035 T23: 0.0205 REMARK 3 L TENSOR REMARK 3 L11: 2.1015 L22: 3.0510 REMARK 3 L33: 1.7711 L12: -0.4102 REMARK 3 L13: -0.5463 L23: 0.2661 REMARK 3 S TENSOR REMARK 3 S11: 0.1673 S12: 0.1158 S13: 0.2217 REMARK 3 S21: -0.1184 S22: -0.1678 S23: -0.0791 REMARK 3 S31: -0.4677 S32: -0.0554 S33: 0.0058 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8GLH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAR-23. REMARK 100 THE DEPOSITION ID IS D_1000273127. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAY-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95370 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36495 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.830 REMARK 200 RESOLUTION RANGE LOW (A) : 41.130 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.7 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 6D64 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24% PEG3350, 0.2 M SODIUM IODIDE, 2% REMARK 280 ETHYLENE GLYCOL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.72350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.72250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.52450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.72250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.72350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.52450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 2 REMARK 465 ALA A 3 REMARK 465 ASP A 284 REMARK 465 ILE A 285 REMARK 465 PHE A 286 REMARK 465 GLU A 287 REMARK 465 ALA A 288 REMARK 465 GLN A 289 REMARK 465 LYS A 290 REMARK 465 ILE A 291 REMARK 465 GLU A 292 REMARK 465 TRP A 293 REMARK 465 HIS A 294 REMARK 465 GLU A 295 REMARK 465 HIS A 296 REMARK 465 HIS A 297 REMARK 465 HIS A 298 REMARK 465 HIS A 299 REMARK 465 HIS A 300 REMARK 465 HIS A 301 REMARK 465 MET B 101 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 25 CG CD OE1 NE2 REMARK 470 LYS A 91 CD CE NZ REMARK 470 LYS A 143 CD CE NZ REMARK 470 GLN A 150 CD OE1 NE2 REMARK 470 GLN A 152 CG CD OE1 NE2 REMARK 470 GLU A 269 CD OE1 OE2 REMARK 470 GLU B 49 CG CD OE1 OE2 REMARK 470 LYS B 50 CG CD CE NZ REMARK 470 GLU B 76 CG CD OE1 OE2 REMARK 470 LYS B 77 CG CD CE NZ REMARK 470 ASP B 100 OD1 OD2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 68 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 948 O HOH A 1020 1.97 REMARK 500 O HOH B 313 O HOH B 377 2.12 REMARK 500 O LEU B 89 O HOH B 301 2.16 REMARK 500 OE1 GLN B 4 O HOH B 302 2.18 REMARK 500 O HOH A 899 O HOH A 1034 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 33 -120.41 51.03 REMARK 500 GLU A 269 57.25 38.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 202 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 54 OG REMARK 620 2 ASP B 55 O 85.5 REMARK 620 3 TYR B 65 O 113.0 113.6 REMARK 620 4 HOH B 411 O 85.0 105.2 137.9 REMARK 620 N 1 2 3 DBREF 8GLH A 2 278 UNP P29016 CD1B_HUMAN 20 296 DBREF 8GLH B 3 101 UNP P61769 B2MG_HUMAN 21 119 SEQADV 8GLH GLY A 279 UNP P29016 EXPRESSION TAG SEQADV 8GLH SER A 280 UNP P29016 EXPRESSION TAG SEQADV 8GLH GLY A 281 UNP P29016 EXPRESSION TAG SEQADV 8GLH LEU A 282 UNP P29016 EXPRESSION TAG SEQADV 8GLH ASN A 283 UNP P29016 EXPRESSION TAG SEQADV 8GLH ASP A 284 UNP P29016 EXPRESSION TAG SEQADV 8GLH ILE A 285 UNP P29016 EXPRESSION TAG SEQADV 8GLH PHE A 286 UNP P29016 EXPRESSION TAG SEQADV 8GLH GLU A 287 UNP P29016 EXPRESSION TAG SEQADV 8GLH ALA A 288 UNP P29016 EXPRESSION TAG SEQADV 8GLH GLN A 289 UNP P29016 EXPRESSION TAG SEQADV 8GLH LYS A 290 UNP P29016 EXPRESSION TAG SEQADV 8GLH ILE A 291 UNP P29016 EXPRESSION TAG SEQADV 8GLH GLU A 292 UNP P29016 EXPRESSION TAG SEQADV 8GLH TRP A 293 UNP P29016 EXPRESSION TAG SEQADV 8GLH HIS A 294 UNP P29016 EXPRESSION TAG SEQADV 8GLH GLU A 295 UNP P29016 EXPRESSION TAG SEQADV 8GLH HIS A 296 UNP P29016 EXPRESSION TAG SEQADV 8GLH HIS A 297 UNP P29016 EXPRESSION TAG SEQADV 8GLH HIS A 298 UNP P29016 EXPRESSION TAG SEQADV 8GLH HIS A 299 UNP P29016 EXPRESSION TAG SEQADV 8GLH HIS A 300 UNP P29016 EXPRESSION TAG SEQADV 8GLH HIS A 301 UNP P29016 EXPRESSION TAG SEQADV 8GLH PRO B 1 UNP P61769 EXPRESSION TAG SEQADV 8GLH LYS B 2 UNP P61769 EXPRESSION TAG SEQRES 1 A 300 HIS ALA PHE GLN GLY PRO THR SER PHE HIS VAL ILE GLN SEQRES 2 A 300 THR SER SER PHE THR ASN SER THR TRP ALA GLN THR GLN SEQRES 3 A 300 GLY SER GLY TRP LEU ASP ASP LEU GLN ILE HIS GLY TRP SEQRES 4 A 300 ASP SER ASP SER GLY THR ALA ILE PHE LEU LYS PRO TRP SEQRES 5 A 300 SER LYS GLY ASN PHE SER ASP LYS GLU VAL ALA GLU LEU SEQRES 6 A 300 GLU GLU ILE PHE ARG VAL TYR ILE PHE GLY PHE ALA ARG SEQRES 7 A 300 GLU VAL GLN ASP PHE ALA GLY ASP PHE GLN MET LYS TYR SEQRES 8 A 300 PRO PHE GLU ILE GLN GLY ILE ALA GLY CYS GLU LEU HIS SEQRES 9 A 300 SER GLY GLY ALA ILE VAL SER PHE LEU ARG GLY ALA LEU SEQRES 10 A 300 GLY GLY LEU ASP PHE LEU SER VAL LYS ASN ALA SER CYS SEQRES 11 A 300 VAL PRO SER PRO GLU GLY GLY SER ARG ALA GLN LYS PHE SEQRES 12 A 300 CYS ALA LEU ILE ILE GLN TYR GLN GLY ILE MET GLU THR SEQRES 13 A 300 VAL ARG ILE LEU LEU TYR GLU THR CYS PRO ARG TYR LEU SEQRES 14 A 300 LEU GLY VAL LEU ASN ALA GLY LYS ALA ASP LEU GLN ARG SEQRES 15 A 300 GLN VAL LYS PRO GLU ALA TRP LEU SER SER GLY PRO SER SEQRES 16 A 300 PRO GLY PRO GLY ARG LEU GLN LEU VAL CYS HIS VAL SER SEQRES 17 A 300 GLY PHE TYR PRO LYS PRO VAL TRP VAL MET TRP MET ARG SEQRES 18 A 300 GLY GLU GLN GLU GLN GLN GLY THR GLN LEU GLY ASP ILE SEQRES 19 A 300 LEU PRO ASN ALA ASN TRP THR TRP TYR LEU ARG ALA THR SEQRES 20 A 300 LEU ASP VAL ALA ASP GLY GLU ALA ALA GLY LEU SER CYS SEQRES 21 A 300 ARG VAL LYS HIS SER SER LEU GLU GLY GLN ASP ILE ILE SEQRES 22 A 300 LEU TYR TRP ARG GLY SER GLY LEU ASN ASP ILE PHE GLU SEQRES 23 A 300 ALA GLN LYS ILE GLU TRP HIS GLU HIS HIS HIS HIS HIS SEQRES 24 A 300 HIS SEQRES 1 B 101 PRO LYS ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER SEQRES 2 B 101 ARG HIS PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN SEQRES 3 B 101 CYS TYR VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL SEQRES 4 B 101 ASP LEU LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU SEQRES 5 B 101 HIS SER ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR SEQRES 6 B 101 LEU LEU TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP SEQRES 7 B 101 GLU TYR ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN SEQRES 8 B 101 PRO LYS ILE VAL LYS TRP ASP ARG ASP MET HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET MAN C 5 11 HET FUC C 6 10 HET FUC C 7 10 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET FUC D 4 10 HET FUC D 5 10 HET IOD A 701 1 HET 3IV A 702 18 HET 3IY A 703 60 HET EDO A 704 4 HET EDO A 705 4 HET EDO A 706 4 HET EDO A 707 4 HET IOD B 201 1 HET NA B 202 1 HET IOD B 203 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM IOD IODIDE ION HETNAM 3IV (11E)-HEXADEC-11-ENOIC ACID HETNAM 3IY [(2~{R})-1-DODECANOYLOXY-3-[OXIDANYL-[2-(TRIMETHYL- HETNAM 2 3IY $L^{4}-AZANYL)ETHOXY]PHOSPHORYL]OXY-PROPAN-2-YL] HETNAM 3 3IY (8~{Z},11~{Z},14~{Z},24~{Z},27~{Z})-TRIACONTA-8,11,14, HETNAM 4 3IY 24,27-PENTAENOATE HETNAM EDO 1,2-ETHANEDIOL HETNAM NA SODIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 NAG 4(C8 H15 N O6) FORMUL 3 BMA 2(C6 H12 O6) FORMUL 3 MAN 2(C6 H12 O6) FORMUL 3 FUC 4(C6 H12 O5) FORMUL 5 IOD 3(I 1-) FORMUL 6 3IV C16 H30 O2 FORMUL 7 3IY C50 H91 N O8 P 1+ FORMUL 8 EDO 4(C2 H6 O2) FORMUL 13 NA NA 1+ FORMUL 15 HOH *402(H2 O) HELIX 1 AA1 SER A 59 ALA A 85 1 27 HELIX 2 AA2 GLY A 137 ILE A 149 1 13 HELIX 3 AA3 GLY A 153 GLU A 164 1 12 HELIX 4 AA4 GLU A 164 GLY A 177 1 14 HELIX 5 AA5 GLY A 177 GLN A 182 1 6 HELIX 6 AA6 GLY A 254 ALA A 256 5 3 HELIX 7 AA7 HIS A 265 GLU A 269 5 5 SHEET 1 AA1 8 THR A 46 PHE A 49 0 SHEET 2 AA1 8 LEU A 35 ASP A 41 -1 N GLY A 39 O ILE A 48 SHEET 3 AA1 8 TRP A 23 LEU A 32 -1 N LEU A 32 O LEU A 35 SHEET 4 AA1 8 SER A 9 ASN A 20 -1 N SER A 17 O GLN A 25 SHEET 5 AA1 8 PHE A 94 LEU A 104 -1 O ILE A 96 N SER A 16 SHEET 6 AA1 8 ILE A 110 LEU A 118 -1 O ALA A 117 N GLN A 97 SHEET 7 AA1 8 LEU A 121 LYS A 127 -1 O PHE A 123 N GLY A 116 SHEET 8 AA1 8 SER A 130 PRO A 133 -1 O VAL A 132 N SER A 125 SHEET 1 AA2 4 GLU A 188 PRO A 195 0 SHEET 2 AA2 4 ARG A 201 PHE A 211 -1 O SER A 209 N GLU A 188 SHEET 3 AA2 4 THR A 242 ALA A 252 -1 O ALA A 247 N CYS A 206 SHEET 4 AA2 4 GLN A 231 LEU A 232 -1 N GLN A 231 O THR A 248 SHEET 1 AA3 4 GLU A 188 PRO A 195 0 SHEET 2 AA3 4 ARG A 201 PHE A 211 -1 O SER A 209 N GLU A 188 SHEET 3 AA3 4 THR A 242 ALA A 252 -1 O ALA A 247 N CYS A 206 SHEET 4 AA3 4 LEU A 236 ASN A 238 -1 N LEU A 236 O TYR A 244 SHEET 1 AA4 4 GLN A 225 GLU A 226 0 SHEET 2 AA4 4 TRP A 217 ARG A 222 -1 N ARG A 222 O GLN A 225 SHEET 3 AA4 4 LEU A 259 LYS A 264 -1 O SER A 260 N MET A 221 SHEET 4 AA4 4 ILE A 273 TYR A 276 -1 O LEU A 275 N CYS A 261 SHEET 1 AA5 4 LYS B 8 SER B 13 0 SHEET 2 AA5 4 ASN B 23 PHE B 32 -1 O SER B 30 N LYS B 8 SHEET 3 AA5 4 PHE B 64 PHE B 72 -1 O TYR B 68 N CYS B 27 SHEET 4 AA5 4 GLU B 52 HIS B 53 -1 N GLU B 52 O TYR B 69 SHEET 1 AA6 4 LYS B 8 SER B 13 0 SHEET 2 AA6 4 ASN B 23 PHE B 32 -1 O SER B 30 N LYS B 8 SHEET 3 AA6 4 PHE B 64 PHE B 72 -1 O TYR B 68 N CYS B 27 SHEET 4 AA6 4 SER B 57 PHE B 58 -1 N SER B 57 O TYR B 65 SHEET 1 AA7 4 GLU B 46 ARG B 47 0 SHEET 2 AA7 4 GLU B 38 LYS B 43 -1 N LYS B 43 O GLU B 46 SHEET 3 AA7 4 TYR B 80 ASN B 85 -1 O ARG B 83 N ASP B 40 SHEET 4 AA7 4 LYS B 93 LYS B 96 -1 O LYS B 93 N VAL B 84 SSBOND 1 CYS A 102 CYS A 166 1555 1555 2.07 SSBOND 2 CYS A 131 CYS A 145 1555 1555 2.05 SSBOND 3 CYS A 206 CYS A 261 1555 1555 2.02 SSBOND 4 CYS B 27 CYS B 82 1555 1555 2.03 LINK ND2 ASN A 20 C1 NAG D 1 1555 1555 1.44 LINK ND2 ASN A 57 C1 NAG C 1 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.43 LINK O3 NAG C 1 C1 FUC C 6 1555 1555 1.45 LINK O6 NAG C 1 C1 FUC C 7 1555 1555 1.43 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.43 LINK O3 BMA C 3 C1 MAN C 4 1555 1555 1.44 LINK O6 BMA C 3 C1 MAN C 5 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 LINK O3 NAG D 1 C1 FUC D 4 1555 1555 1.45 LINK O6 NAG D 1 C1 FUC D 5 1555 1555 1.44 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.44 LINK OG SER B 54 NA NA B 202 1555 1555 2.70 LINK O ASP B 55 NA NA B 202 1555 1555 2.57 LINK O TYR B 65 NA NA B 202 1555 1555 2.89 LINK NA NA B 202 O HOH B 411 1555 1555 2.92 CISPEP 1 TYR A 92 PRO A 93 0 -4.21 CISPEP 2 TYR A 212 PRO A 213 0 1.78 CISPEP 3 HIS B 33 PRO B 34 0 1.86 CRYST1 57.447 77.049 91.445 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017407 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012979 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010936 0.00000