HEADER METAL TRANSPORT 24-MAR-23 8GM3 TITLE VIBRIO HARVEYI HOLO HPHA COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMOPHILIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TRANSFERRIN-BINDING PROTEIN B C-LOBE/N-LOBE BETA BARREL COMPND 5 DOMAIN-CONTAINING PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO HARVEYI; SOURCE 3 ORGANISM_TAXID: 669; SOURCE 4 GENE: AL538_19455; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HEME BINDING, HEMOPHORE, TYPE XI SECRETION SYSTEM CARGO, BETA BARREL, KEYWDS 2 METAL TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR C.PAN,M.SHAH,T.F.MORAES REVDAT 1 27-MAR-24 8GM3 0 JRNL AUTH H.E.SHIN,T.F.MORAES JRNL TITL HEME ACQUISITION BY SLAM-DEPENDENT HEMOPHORES IN JRNL TITL 2 GRAM-NEGATIVE BACTERIA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13-2998-000 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 69.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 3 NUMBER OF REFLECTIONS : 42908 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1844 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 69.5860 - 4.0605 1.00 3666 161 0.1637 0.1897 REMARK 3 2 4.0605 - 3.2230 0.99 3483 156 0.1719 0.2171 REMARK 3 3 3.2230 - 2.8155 0.99 3407 153 0.1954 0.2366 REMARK 3 4 2.8155 - 2.5581 0.99 3432 156 0.2161 0.2718 REMARK 3 5 2.5581 - 2.3747 0.98 3358 150 0.2232 0.2722 REMARK 3 6 2.3747 - 2.2347 0.94 3222 147 0.2446 0.3196 REMARK 3 7 2.2347 - 2.1228 0.92 3140 146 0.2086 0.2582 REMARK 3 8 2.1228 - 2.0304 0.93 3157 141 0.2378 0.2930 REMARK 3 9 2.0304 - 1.9522 0.92 3117 144 0.2273 0.2304 REMARK 3 10 1.9522 - 1.8848 0.80 2689 109 0.3433 0.3830 REMARK 3 11 1.8848 - 1.8259 0.88 3017 139 0.2762 0.3377 REMARK 3 12 1.8259 - 1.7737 0.83 2782 125 0.2876 0.3166 REMARK 3 13 1.7737 - 1.7270 0.77 2594 117 0.2932 0.4170 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.290 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3387 REMARK 3 ANGLE : 0.827 4615 REMARK 3 CHIRALITY : 0.054 472 REMARK 3 PLANARITY : 0.004 616 REMARK 3 DIHEDRAL : 12.467 1853 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8GM3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-MAR-23. REMARK 100 THE DEPOSITION ID IS D_1000273154. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-AUG-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46308 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.727 REMARK 200 RESOLUTION RANGE LOW (A) : 69.586 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.410 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE INITIAL CRYSTALS OF PUF1 WERE REMARK 280 OBSERVED FROM A SCREEN CONDITION CONTAINING 25% PEG3350, 0.1 M REMARK 280 BIS-TRIS PH 5.5 WITH TRYPSIN ADDED TO 3.53 MG/ML PUF1 AT A 1:100 REMARK 280 MASS RATIO. FURTHER OPTIMIZATION WAS PERFORMED TO OBTAIN BETTER REMARK 280 CRYSTALS THAT FORMED IN 25% PEG3350, 0.1M BIS-TRIS PH 5.0, AND REMARK 280 20% GLYCEROL WITH STREAK SEEDING, TRYPSIN AT 0.06 MG/ML AND PUF1 REMARK 280 AT 6.64MG/ML, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.54000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.78850 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.54000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 67.78850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 465 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 495 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 219 REMARK 465 GLU A 220 REMARK 465 LEU A 221 REMARK 465 ALA A 222 REMARK 465 LEU A 223 REMARK 465 VAL A 224 REMARK 465 PRO A 225 REMARK 465 ARG A 226 REMARK 465 GLY A 227 REMARK 465 SER A 228 REMARK 465 HIS A 229 REMARK 465 HIS A 230 REMARK 465 HIS A 231 REMARK 465 HIS A 232 REMARK 465 HIS A 233 REMARK 465 HIS A 234 REMARK 465 LYS B 219 REMARK 465 GLU B 220 REMARK 465 LEU B 221 REMARK 465 ALA B 222 REMARK 465 LEU B 223 REMARK 465 VAL B 224 REMARK 465 PRO B 225 REMARK 465 ARG B 226 REMARK 465 GLY B 227 REMARK 465 SER B 228 REMARK 465 HIS B 229 REMARK 465 HIS B 230 REMARK 465 HIS B 231 REMARK 465 HIS B 232 REMARK 465 HIS B 233 REMARK 465 HIS B 234 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 91 CG OD1 OD2 REMARK 470 GLN A 177 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 475 O HOH B 570 1.83 REMARK 500 O HOH A 446 O HOH A 556 1.90 REMARK 500 O HOH A 446 O HOH A 542 1.94 REMARK 500 O HOH B 417 O HOH B 534 2.02 REMARK 500 O HOH B 434 O HOH B 563 2.04 REMARK 500 O HOH A 467 O HOH A 575 2.05 REMARK 500 NZ LYS B 143 O HOH B 401 2.07 REMARK 500 O HOH B 459 O HOH B 541 2.07 REMARK 500 O HOH A 527 O HOH A 537 2.08 REMARK 500 O HOH A 579 O HOH A 583 2.08 REMARK 500 O HOH B 517 O HOH B 563 2.09 REMARK 500 O HOH B 506 O HOH B 539 2.12 REMARK 500 O HOH A 468 O HOH A 524 2.13 REMARK 500 O HOH B 430 O HOH B 538 2.14 REMARK 500 O HOH A 414 O HOH A 576 2.16 REMARK 500 OE2 GLU A 87 O HOH A 401 2.17 REMARK 500 NZ LYS A 90 O HOH A 402 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 541 O HOH B 541 2566 2.04 REMARK 500 O HOH A 406 O HOH B 440 3555 2.15 REMARK 500 O HOH B 557 O HOH B 573 1655 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 23 5.66 84.01 REMARK 500 ILE A 24 -57.76 -142.16 REMARK 500 ALA A 76 -135.11 50.89 REMARK 500 LYS A 90 127.70 118.02 REMARK 500 ASP A 91 -3.56 64.07 REMARK 500 SER A 92 -70.53 -118.39 REMARK 500 PHE A 94 77.18 -104.26 REMARK 500 ASN A 151 -161.30 -112.07 REMARK 500 VAL A 176 -60.06 -108.48 REMARK 500 GLN A 177 93.85 -17.34 REMARK 500 ASN A 207 90.81 -165.89 REMARK 500 PHE B 23 0.46 82.43 REMARK 500 ILE B 24 -55.78 -133.45 REMARK 500 ALA B 76 -135.35 48.02 REMARK 500 SER B 92 -37.48 -138.31 REMARK 500 ASN B 151 -156.34 -117.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 582 DISTANCE = 6.11 ANGSTROMS REMARK 525 HOH A 583 DISTANCE = 6.14 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEB A 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 25 NE2 REMARK 620 2 HEB A 301 NA 94.1 REMARK 620 3 HEB A 301 NB 92.4 86.1 REMARK 620 4 HEB A 301 NC 85.6 178.1 92.1 REMARK 620 5 HEB A 301 ND 85.4 92.0 176.9 89.9 REMARK 620 6 HIS A 64 NE2 177.4 84.4 85.5 95.9 96.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEB B 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 25 NE2 REMARK 620 2 HEB B 301 NA 92.0 REMARK 620 3 HEB B 301 NB 89.2 87.1 REMARK 620 4 HEB B 301 NC 87.9 177.0 89.9 REMARK 620 5 HEB B 301 ND 88.9 93.2 178.1 89.8 REMARK 620 6 HIS B 64 NE2 173.7 82.6 87.1 97.2 94.8 REMARK 620 N 1 2 3 4 5 DBREF1 8GM3 A 1 219 UNP A0A3A1PTD6_VIBHA DBREF2 8GM3 A A0A3A1PTD6 23 241 DBREF1 8GM3 B 1 219 UNP A0A3A1PTD6_VIBHA DBREF2 8GM3 B A0A3A1PTD6 23 241 SEQADV 8GM3 GLU A 220 UNP A0A3A1PTD EXPRESSION TAG SEQADV 8GM3 LEU A 221 UNP A0A3A1PTD EXPRESSION TAG SEQADV 8GM3 ALA A 222 UNP A0A3A1PTD EXPRESSION TAG SEQADV 8GM3 LEU A 223 UNP A0A3A1PTD EXPRESSION TAG SEQADV 8GM3 VAL A 224 UNP A0A3A1PTD EXPRESSION TAG SEQADV 8GM3 PRO A 225 UNP A0A3A1PTD EXPRESSION TAG SEQADV 8GM3 ARG A 226 UNP A0A3A1PTD EXPRESSION TAG SEQADV 8GM3 GLY A 227 UNP A0A3A1PTD EXPRESSION TAG SEQADV 8GM3 SER A 228 UNP A0A3A1PTD EXPRESSION TAG SEQADV 8GM3 HIS A 229 UNP A0A3A1PTD EXPRESSION TAG SEQADV 8GM3 HIS A 230 UNP A0A3A1PTD EXPRESSION TAG SEQADV 8GM3 HIS A 231 UNP A0A3A1PTD EXPRESSION TAG SEQADV 8GM3 HIS A 232 UNP A0A3A1PTD EXPRESSION TAG SEQADV 8GM3 HIS A 233 UNP A0A3A1PTD EXPRESSION TAG SEQADV 8GM3 HIS A 234 UNP A0A3A1PTD EXPRESSION TAG SEQADV 8GM3 GLU B 220 UNP A0A3A1PTD EXPRESSION TAG SEQADV 8GM3 LEU B 221 UNP A0A3A1PTD EXPRESSION TAG SEQADV 8GM3 ALA B 222 UNP A0A3A1PTD EXPRESSION TAG SEQADV 8GM3 LEU B 223 UNP A0A3A1PTD EXPRESSION TAG SEQADV 8GM3 VAL B 224 UNP A0A3A1PTD EXPRESSION TAG SEQADV 8GM3 PRO B 225 UNP A0A3A1PTD EXPRESSION TAG SEQADV 8GM3 ARG B 226 UNP A0A3A1PTD EXPRESSION TAG SEQADV 8GM3 GLY B 227 UNP A0A3A1PTD EXPRESSION TAG SEQADV 8GM3 SER B 228 UNP A0A3A1PTD EXPRESSION TAG SEQADV 8GM3 HIS B 229 UNP A0A3A1PTD EXPRESSION TAG SEQADV 8GM3 HIS B 230 UNP A0A3A1PTD EXPRESSION TAG SEQADV 8GM3 HIS B 231 UNP A0A3A1PTD EXPRESSION TAG SEQADV 8GM3 HIS B 232 UNP A0A3A1PTD EXPRESSION TAG SEQADV 8GM3 HIS B 233 UNP A0A3A1PTD EXPRESSION TAG SEQADV 8GM3 HIS B 234 UNP A0A3A1PTD EXPRESSION TAG SEQRES 1 A 234 GLY PHE ASP GLY ALA ILE SER ASP ASP SER LEU ARG GLN SEQRES 2 A 234 VAL GLY GLU SER GLU VAL TRP VAL PRO PHE ILE HIS SER SEQRES 3 A 234 LYS GLY ASN ALA GLY ILE GLY LYS THR GLY GLY LYS ARG SEQRES 4 A 234 VAL ASP PHE GLU GLY LEU ALA GLY GLY ILE PHE ASP ASP SEQRES 5 A 234 GLU ARG ASN GLY VAL HIS THR SER GLY SER LYS HIS PHE SEQRES 6 A 234 GLN ASP ASN PHE TYR SER PHE VAL GLN VAL ALA ASN GLN SEQRES 7 A 234 ASP VAL TRP PHE GLY GLU TRP TYR GLU GLY LYS LYS ASP SEQRES 8 A 234 SER GLU PHE ASN ASN ARG THR VAL TYR TYR VAL GLY ASN SEQRES 9 A 234 ASP ALA GLY THR THR VAL PRO THR SER GLY LYS ALA THR SEQRES 10 A 234 TYR ASN ILE THR GLY ILE ASN LYS PHE SER GLY ALA ASN SEQRES 11 A 234 LYS LEU SER GLY THR PHE ASN ALA ASP PHE GLY ALA LYS SEQRES 12 A 234 THR LEU ASP GLY SER ILE ASN ASN SER ASN LEU THR VAL SEQRES 13 A 234 SER VAL ASP ALA THR ILE ASN ALA ALA THR ALA ALA PHE SEQRES 14 A 234 ASN GLY THR ALA GLN ALA VAL GLN ASN GLY THR THR THR SEQRES 15 A 234 ASN GLY ALA SER GLN GLY HIS PHE PHE GLY ALA ASN ALA SEQRES 16 A 234 ALA GLY LEU ALA GLY ILE ALA THR PHE THR ASN ASN SER SEQRES 17 A 234 ASP LEU ASP THR ALA PHE GLY GLY GLU LYS LYS GLU LEU SEQRES 18 A 234 ALA LEU VAL PRO ARG GLY SER HIS HIS HIS HIS HIS HIS SEQRES 1 B 234 GLY PHE ASP GLY ALA ILE SER ASP ASP SER LEU ARG GLN SEQRES 2 B 234 VAL GLY GLU SER GLU VAL TRP VAL PRO PHE ILE HIS SER SEQRES 3 B 234 LYS GLY ASN ALA GLY ILE GLY LYS THR GLY GLY LYS ARG SEQRES 4 B 234 VAL ASP PHE GLU GLY LEU ALA GLY GLY ILE PHE ASP ASP SEQRES 5 B 234 GLU ARG ASN GLY VAL HIS THR SER GLY SER LYS HIS PHE SEQRES 6 B 234 GLN ASP ASN PHE TYR SER PHE VAL GLN VAL ALA ASN GLN SEQRES 7 B 234 ASP VAL TRP PHE GLY GLU TRP TYR GLU GLY LYS LYS ASP SEQRES 8 B 234 SER GLU PHE ASN ASN ARG THR VAL TYR TYR VAL GLY ASN SEQRES 9 B 234 ASP ALA GLY THR THR VAL PRO THR SER GLY LYS ALA THR SEQRES 10 B 234 TYR ASN ILE THR GLY ILE ASN LYS PHE SER GLY ALA ASN SEQRES 11 B 234 LYS LEU SER GLY THR PHE ASN ALA ASP PHE GLY ALA LYS SEQRES 12 B 234 THR LEU ASP GLY SER ILE ASN ASN SER ASN LEU THR VAL SEQRES 13 B 234 SER VAL ASP ALA THR ILE ASN ALA ALA THR ALA ALA PHE SEQRES 14 B 234 ASN GLY THR ALA GLN ALA VAL GLN ASN GLY THR THR THR SEQRES 15 B 234 ASN GLY ALA SER GLN GLY HIS PHE PHE GLY ALA ASN ALA SEQRES 16 B 234 ALA GLY LEU ALA GLY ILE ALA THR PHE THR ASN ASN SER SEQRES 17 B 234 ASP LEU ASP THR ALA PHE GLY GLY GLU LYS LYS GLU LEU SEQRES 18 B 234 ALA LEU VAL PRO ARG GLY SER HIS HIS HIS HIS HIS HIS HET HEB A 301 73 HET HEB B 301 73 HETNAM HEB HEME B/C HETSYN HEB HYBRID BETWEEN B AND C TYPE HEMES (PROTOPORPHYRIN IX HETSYN 2 HEB CONTAINING FE) FORMUL 3 HEB 2(C34 H34 FE N4 O4) FORMUL 5 HOH *358(H2 O) HELIX 1 AA1 PHE A 42 ALA A 46 1 5 HELIX 2 AA2 GLY A 192 ALA A 195 5 4 HELIX 3 AA3 ASN A 207 ASP A 211 5 5 HELIX 4 AA4 PHE B 42 ALA B 46 1 5 HELIX 5 AA5 GLY B 192 ALA B 195 5 4 HELIX 6 AA6 ASN B 207 ASP B 211 5 5 SHEET 1 AA1 6 PHE A 2 ILE A 6 0 SHEET 2 AA1 6 ASN A 95 ASN A 104 -1 O GLY A 103 N ASP A 3 SHEET 3 AA1 6 VAL A 80 GLU A 87 -1 N GLU A 87 O ASN A 95 SHEET 4 AA1 6 ASN A 68 GLN A 74 -1 N VAL A 73 O PHE A 82 SHEET 5 AA1 6 VAL A 57 SER A 60 -1 N HIS A 58 O PHE A 72 SHEET 6 AA1 6 ASP A 51 ARG A 54 -1 N ASP A 52 O THR A 59 SHEET 1 AA2 3 ARG A 12 GLU A 16 0 SHEET 2 AA2 3 ALA A 30 LYS A 34 -1 O GLY A 33 N GLN A 13 SHEET 3 AA2 3 ARG A 39 ASP A 41 -1 O VAL A 40 N ILE A 32 SHEET 1 AA3 9 LYS A 115 ILE A 123 0 SHEET 2 AA3 9 LEU A 132 ASP A 139 -1 O ALA A 138 N ALA A 116 SHEET 3 AA3 9 THR A 144 ASN A 150 -1 O ASP A 146 N ASN A 137 SHEET 4 AA3 9 THR A 155 ASN A 163 -1 O ALA A 160 N LEU A 145 SHEET 5 AA3 9 ALA A 168 ALA A 175 -1 O ALA A 168 N ASN A 163 SHEET 6 AA3 9 THR A 182 PHE A 191 -1 O GLY A 184 N ALA A 173 SHEET 7 AA3 9 GLY A 197 THR A 203 -1 O THR A 203 N ALA A 185 SHEET 8 AA3 9 THR A 212 GLU A 217 -1 O PHE A 214 N GLY A 200 SHEET 9 AA3 9 LYS A 115 ILE A 123 -1 N ASN A 119 O GLU A 217 SHEET 1 AA4 6 PHE B 2 ILE B 6 0 SHEET 2 AA4 6 ASN B 95 ASN B 104 -1 O TYR B 101 N ALA B 5 SHEET 3 AA4 6 VAL B 80 GLU B 87 -1 N GLU B 87 O ASN B 95 SHEET 4 AA4 6 ASN B 68 GLN B 74 -1 N VAL B 73 O PHE B 82 SHEET 5 AA4 6 VAL B 57 SER B 60 -1 N HIS B 58 O PHE B 72 SHEET 6 AA4 6 ASP B 51 ARG B 54 -1 N ASP B 52 O THR B 59 SHEET 1 AA5 3 ARG B 12 GLU B 16 0 SHEET 2 AA5 3 ALA B 30 LYS B 34 -1 O GLY B 31 N GLY B 15 SHEET 3 AA5 3 ARG B 39 ASP B 41 -1 O VAL B 40 N ILE B 32 SHEET 1 AA6 9 LYS B 115 ILE B 123 0 SHEET 2 AA6 9 LEU B 132 ASP B 139 -1 O LEU B 132 N GLY B 122 SHEET 3 AA6 9 THR B 144 ASN B 150 -1 O ASP B 146 N ASN B 137 SHEET 4 AA6 9 THR B 155 ILE B 162 -1 O ALA B 160 N LEU B 145 SHEET 5 AA6 9 ALA B 168 GLN B 177 -1 O GLN B 174 N SER B 157 SHEET 6 AA6 9 THR B 180 PHE B 191 -1 O GLY B 184 N ALA B 173 SHEET 7 AA6 9 GLY B 197 THR B 203 -1 O GLY B 197 N PHE B 191 SHEET 8 AA6 9 THR B 212 GLU B 217 -1 O PHE B 214 N GLY B 200 SHEET 9 AA6 9 LYS B 115 ILE B 123 -1 N ILE B 123 O ALA B 213 LINK NE2 HIS A 25 FE HEB A 301 1555 1555 2.20 LINK NE2 HIS A 64 FE HEB A 301 1555 1555 2.13 LINK NE2 HIS B 25 FE HEB B 301 1555 1555 2.17 LINK NE2 HIS B 64 FE HEB B 301 1555 1555 2.14 CISPEP 1 SER A 113 GLY A 114 0 -28.64 CISPEP 2 GLN A 177 ASN A 178 0 6.39 CRYST1 39.438 81.080 135.577 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025356 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012333 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007376 0.00000