HEADER TRANSLATION/TRANSFERASE 24-MAR-23 8GM5 TITLE FUNCTIONAL CONSTRUCT OF THE EUKARYOTIC ELONGATION FACTOR 2 KINASE TITLE 2 BOUND TO CALMODULIN, ADP AND TO THE A-484954 INHIBITOR AND SHOWING TITLE 3 TWO CONFORMATIONS FOR THE 498-520 LOOP COMPND MOL_ID: 1; COMPND 2 MOLECULE: EUKARYOTIC ELONGATION FACTOR 2 KINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: EEF-2 KINASE,EEF-2K,CALCIUM/CALMODULIN-DEPENDENT EUKARYOTIC COMPND 5 ELONGATION FACTOR 2 KINASE; COMPND 6 EC: 2.7.11.20; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: CALMODULIN-1; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EEF2K; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: CALM1, CALM, CAM, CAM1; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS ELONGATION FACTOR 2 KINASE, EEF2, EEF2K, EEF-2K, CALMODULIN, KEYWDS 2 TRANSLATION, A-484954, ADP, ALLOSTERY, TRANSLATION-TRANSFERASE KEYWDS 3 COMPLEX, ALTERNATE CONFORMATIONS, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.PISERCHIO,E.A.ISIORHO,K.N.DALBY,R.GHOSE REVDAT 3 25-OCT-23 8GM5 1 REMARK REVDAT 2 21-JUN-23 8GM5 1 JRNL REVDAT 1 31-MAY-23 8GM5 0 JRNL AUTH A.PISERCHIO,E.A.ISIORHO,K.N.DALBY,R.GHOSE JRNL TITL STRUCTURE OF THE COMPLEX BETWEEN CALMODULIN AND A FUNCTIONAL JRNL TITL 2 CONSTRUCT OF EUKARYOTIC ELONGATION FACTOR 2 KINASE BOUND TO JRNL TITL 3 AN ATP-COMPETITIVE INHIBITOR. JRNL REF J.BIOL.CHEM. V. 299 04813 2023 JRNL REFN ESSN 1083-351X JRNL PMID 37172726 JRNL DOI 10.1016/J.JBC.2023.104813 REMARK 2 REMARK 2 RESOLUTION. 2.12 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.12 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 67.1 REMARK 3 NUMBER OF REFLECTIONS : 30782 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1534 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.9400 - 4.7200 0.99 4077 199 0.1721 0.1987 REMARK 3 2 4.7200 - 3.7500 1.00 3996 191 0.1378 0.1895 REMARK 3 3 3.7500 - 3.2800 1.00 3945 232 0.1599 0.2111 REMARK 3 4 3.2800 - 2.9800 1.00 3964 215 0.1971 0.2177 REMARK 3 5 2.9800 - 2.7600 0.99 3876 216 0.2168 0.2844 REMARK 3 6 2.7600 - 2.6000 0.82 3230 177 0.2474 0.2980 REMARK 3 7 2.6000 - 2.4700 0.63 2502 105 0.2380 0.2907 REMARK 3 8 2.4700 - 2.3600 0.47 1851 106 0.2577 0.2829 REMARK 3 9 2.3600 - 2.2700 0.29 1148 57 0.2583 0.3113 REMARK 3 10 2.2700 - 2.1900 0.13 491 22 0.2504 0.3538 REMARK 3 11 2.1900 - 2.1200 0.04 168 14 0.2591 0.3201 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.241 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.122 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4502 REMARK 3 ANGLE : 0.518 6084 REMARK 3 CHIRALITY : 0.039 637 REMARK 3 PLANARITY : 0.004 793 REMARK 3 DIHEDRAL : 5.304 613 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8GM5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-MAR-23. REMARK 100 THE DEPOSITION ID IS D_1000272993. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-MAY-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : SI(111) DCM REMARK 200 OPTICS : HORIZONTAL PRE-FOCUS BIMORPH REMARK 200 MIRROR & KB BIMORPH MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS JAN 10, 2022 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.7 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30789 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.120 REMARK 200 RESOLUTION RANGE LOW (A) : 82.906 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 200 DATA REDUNDANCY : 4.930 REMARK 200 R MERGE (I) : 0.12210 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.8900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 6.67 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 82.91 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.94 REMARK 200 R MERGE FOR SHELL (I) : 0.04880 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 13.44 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.3.90 REMARK 200 STARTING MODEL: 7SHQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: COCKTAIL:16.55% PEG-3350, 0.2 M NAF, REMARK 280 100 MM BISTRIS-PROPANE PROTEIN SOLUTION: 10.3 MG/ML 20 MM TRIS REMARK 280 PH 7.5, 100 MM NACL, 3 MM CACL2, 1MM TCEP, 1.5 M INHIBITOR , 3.1 REMARK 280 % DMSO 2PROTEIN/1COCKTAIL (0.2 UL TOTAL), PH 6.5, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 295.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 30.52050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 70 REMARK 465 SER A 71 REMARK 465 SER A 72 REMARK 465 GLY A 73 REMARK 465 SER A 74 REMARK 465 PRO A 75 REMARK 465 ALA A 76 REMARK 465 ASN A 77 REMARK 465 SER A 78 REMARK 465 ASP A 248 REMARK 465 THR A 340 REMARK 465 LYS A 341 REMARK 465 LEU A 342 REMARK 465 LEU A 343 REMARK 465 GLY A 483 REMARK 465 GLY A 484 REMARK 465 GLY A 485 REMARK 465 GLY A 486 REMARK 465 GLY A 487 REMARK 465 GLY A 488 REMARK 465 GLY A 489 REMARK 465 ASN A 490 REMARK 465 SER A 491 REMARK 465 SER A 492 REMARK 465 ARG A 493 REMARK 465 LEU A 494 REMARK 465 HIS A 495 REMARK 465 LEU A 496 REMARK 465 PRO A 497 REMARK 465 ASN A 510 REMARK 465 ALA A 511 REMARK 465 LEU A 512 REMARK 465 ASP A 513 REMARK 465 LYS A 542 REMARK 465 GLY A 543 REMARK 465 THR A 648 REMARK 465 ASP A 649 REMARK 465 CYS A 650 REMARK 465 ASP A 651 REMARK 465 GLU A 652 REMARK 465 GLY A 653 REMARK 465 GLY A 654 REMARK 465 GLU A 655 REMARK 465 TYR A 656 REMARK 465 ASP A 657 REMARK 465 GLY A 658 REMARK 465 MET A 659 REMARK 465 GLN A 660 REMARK 465 ASP A 661 REMARK 465 MET A 723 REMARK 465 GLU A 724 REMARK 465 GLU A 725 REMARK 465 ALA B 1 REMARK 465 ASP B 2 REMARK 465 GLN B 3 REMARK 465 LEU B 4 REMARK 465 THR B 5 REMARK 465 GLU B 6 REMARK 465 GLU B 7 REMARK 465 GLN B 8 REMARK 465 ILE B 9 REMARK 465 ALA B 10 REMARK 465 GLU B 11 REMARK 465 PHE B 12 REMARK 465 LYS B 13 REMARK 465 GLU B 14 REMARK 465 ALA B 15 REMARK 465 PHE B 16 REMARK 465 SER B 17 REMARK 465 LEU B 18 REMARK 465 PHE B 19 REMARK 465 ASP B 20 REMARK 465 LYS B 21 REMARK 465 ASP B 22 REMARK 465 GLY B 23 REMARK 465 ASP B 24 REMARK 465 GLY B 25 REMARK 465 THR B 26 REMARK 465 ILE B 27 REMARK 465 THR B 28 REMARK 465 THR B 29 REMARK 465 LYS B 30 REMARK 465 GLU B 31 REMARK 465 LEU B 32 REMARK 465 GLY B 33 REMARK 465 THR B 34 REMARK 465 VAL B 35 REMARK 465 MET B 36 REMARK 465 ARG B 37 REMARK 465 SER B 38 REMARK 465 LEU B 39 REMARK 465 GLY B 40 REMARK 465 GLN B 41 REMARK 465 ASN B 42 REMARK 465 PRO B 43 REMARK 465 THR B 44 REMARK 465 GLU B 45 REMARK 465 ALA B 46 REMARK 465 GLU B 47 REMARK 465 LEU B 48 REMARK 465 GLN B 49 REMARK 465 ASP B 50 REMARK 465 MET B 51 REMARK 465 ILE B 52 REMARK 465 ASN B 53 REMARK 465 GLU B 54 REMARK 465 VAL B 55 REMARK 465 ASP B 56 REMARK 465 ALA B 57 REMARK 465 ASP B 58 REMARK 465 GLY B 59 REMARK 465 ASN B 60 REMARK 465 GLY B 61 REMARK 465 THR B 62 REMARK 465 ILE B 63 REMARK 465 ASP B 64 REMARK 465 PHE B 65 REMARK 465 PRO B 66 REMARK 465 GLU B 67 REMARK 465 PHE B 68 REMARK 465 LEU B 69 REMARK 465 THR B 70 REMARK 465 MET B 71 REMARK 465 MET B 72 REMARK 465 ALA B 73 REMARK 465 ARG B 74 REMARK 465 LYS B 75 REMARK 465 MET B 76 REMARK 465 LYS B 77 REMARK 465 ASP B 78 REMARK 465 THR B 79 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 80 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 83 CG CD OE1 OE2 REMARK 470 LYS A 162 CD CE NZ REMARK 470 LYS A 202 NZ REMARK 470 GLN A 338 CD OE1 NE2 REMARK 470 GLN A 344 CG CD OE1 NE2 REMARK 470 LYS A 347 CG CD CE NZ REMARK 470 ARG A 498 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 504 CG CD1 CD2 REMARK 470 GLU A 505 CG CD OE1 OE2 REMARK 470 GLN A 507 CD OE1 NE2 REMARK 470 ARG A 508 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 509 CG CD1 CD2 REMARK 470 LEU A 514 CG CD1 CD2 REMARK 470 GLU A 515 CG CD OE1 OE2 REMARK 470 LYS A 516 CG CD CE NZ REMARK 470 LYS A 517 CG CD CE NZ REMARK 470 LYS A 520 CD CE NZ REMARK 470 SER A 521 OG REMARK 470 GLU A 541 CG CD OE1 OE2 REMARK 470 GLU A 544 CG CD OE1 OE2 REMARK 470 GLU A 545 CG CD OE1 OE2 REMARK 470 HIS A 580 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 588 CG CD CE NZ REMARK 470 LYS A 603 NZ REMARK 470 ASP A 629 OD1 OD2 REMARK 470 GLU A 683 CD OE1 OE2 REMARK 470 LYS A 684 NZ REMARK 470 GLU A 702 CD OE1 OE2 REMARK 470 ASP B 80 CG OD1 OD2 REMARK 470 GLU B 82 CG CD OE1 OE2 REMARK 470 GLU B 84 CG CD OE1 OE2 REMARK 470 LYS B 115 CD CE NZ REMARK 470 GLU B 119 CG CD OE1 OE2 REMARK 470 ARG B 126 CD NE CZ NH1 NH2 REMARK 470 GLU B 127 CD OE1 OE2 REMARK 470 LYS B 148 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE A 522 CA - C - N ANGL. DEV. = -14.2 DEGREES REMARK 500 ILE A 522 O - C - N ANGL. DEV. = 16.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 273 -159.86 -131.40 REMARK 500 ASN A 315 -168.28 -121.41 REMARK 500 ASP A 685 84.43 -154.20 REMARK 500 LYS A 705 71.54 -104.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 315 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH B 316 DISTANCE = 6.90 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 803 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 260 ND1 REMARK 620 2 HIS A 312 NE2 106.9 REMARK 620 3 CYS A 314 SG 98.1 110.2 REMARK 620 4 CYS A 318 SG 115.4 110.7 114.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1007 O REMARK 620 2 ASP B 93 OD1 170.0 REMARK 620 3 ASP B 95 OD1 103.0 80.7 REMARK 620 4 ASN B 97 OD1 84.0 87.8 78.3 REMARK 620 5 TYR B 99 O 91.5 81.8 154.4 82.5 REMARK 620 6 GLU B 104 OE1 77.2 108.1 127.8 150.5 75.7 REMARK 620 7 GLU B 104 OE2 95.2 94.7 73.3 150.6 126.9 55.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 129 OD1 REMARK 620 2 ASP B 131 OD1 71.8 REMARK 620 3 ASP B 133 OD1 69.3 85.2 REMARK 620 4 GLN B 135 O 73.4 143.7 73.2 REMARK 620 5 GLU B 140 OE1 97.8 112.9 154.1 81.7 REMARK 620 6 GLU B 140 OE2 92.6 63.7 148.0 128.3 50.5 REMARK 620 N 1 2 3 4 5 DBREF 8GM5 A 70 483 UNP O00418 EF2K_HUMAN 70 358 DBREF 8GM5 A 490 725 UNP O00418 EF2K_HUMAN 490 725 DBREF 8GM5 B 1 148 UNP P0DP23 CALM1_HUMAN 2 149 SEQADV 8GM5 GLY A 484 UNP O00418 LINKER SEQADV 8GM5 GLY A 485 UNP O00418 LINKER SEQADV 8GM5 GLY A 486 UNP O00418 LINKER SEQADV 8GM5 GLY A 487 UNP O00418 LINKER SEQADV 8GM5 GLY A 488 UNP O00418 LINKER SEQADV 8GM5 GLY A 489 UNP O00418 LINKER SEQRES 1 A 531 SER SER SER GLY SER PRO ALA ASN SER PHE HIS PHE LYS SEQRES 2 A 531 GLU ALA TRP LYS HIS ALA ILE GLN LYS ALA LYS HIS MET SEQRES 3 A 531 PRO ASP PRO TRP ALA GLU PHE HIS LEU GLU ASP ILE ALA SEQRES 4 A 531 THR GLU ARG ALA THR ARG HIS ARG TYR ASN ALA VAL THR SEQRES 5 A 531 GLY GLU TRP LEU ASP ASP GLU VAL LEU ILE LYS MET ALA SEQRES 6 A 531 SER GLN PRO PHE GLY ARG GLY ALA MET ARG GLU CYS PHE SEQRES 7 A 531 ARG THR LYS LYS LEU SER ASN PHE LEU HIS ALA GLN GLN SEQRES 8 A 531 TRP LYS GLY ALA SER ASN TYR VAL ALA LYS ARG TYR ILE SEQRES 9 A 531 GLU PRO VAL ASP ARG ASP VAL TYR PHE GLU ASP VAL ARG SEQRES 10 A 531 LEU GLN MET GLU ALA LYS LEU TRP GLY GLU GLU TYR ASN SEQRES 11 A 531 ARG HIS LYS PRO PRO LYS GLN VAL ASP ILE MET GLN MET SEQRES 12 A 531 CYS ILE ILE GLU LEU LYS ASP ARG PRO GLY LYS PRO LEU SEQRES 13 A 531 PHE HIS LEU GLU HIS TYR ILE GLU GLY LYS TYR ILE LYS SEQRES 14 A 531 TYR ASN SER ASN SER GLY PHE VAL ARG ASP ASP ASN ILE SEQRES 15 A 531 ARG LEU THR PRO GLN ALA PHE SER HIS PHE THR PHE GLU SEQRES 16 A 531 ARG SER GLY HIS GLN LEU ILE VAL VAL ASP ILE GLN GLY SEQRES 17 A 531 VAL GLY ASP LEU TYR THR ASP PRO GLN ILE HIS THR GLU SEQRES 18 A 531 THR GLY THR ASP PHE GLY ASP GLY ASN LEU GLY VAL ARG SEQRES 19 A 531 GLY MET ALA LEU PHE PHE TYR SER HIS ALA CYS ASN ARG SEQRES 20 A 531 ILE CYS GLU SER MET GLY LEU ALA PRO PHE ASP LEU SER SEQRES 21 A 531 PRO ARG GLU ARG ASP ALA VAL ASN GLN ASN THR LYS LEU SEQRES 22 A 531 LEU GLN SER ALA LYS TPO ILE LEU ARG GLY THR GLU GLU SEQRES 23 A 531 LYS CYS GLY GLY GLY GLY GLY GLY GLY ASN SER SER ARG SEQRES 24 A 531 LEU HIS LEU PRO ARG ALA SER ALA VAL ALA LEU GLU VAL SEQRES 25 A 531 GLN ARG LEU ASN ALA LEU ASP LEU GLU LYS LYS ILE GLY SEQRES 26 A 531 LYS SER ILE LEU GLY LYS VAL HIS LEU ALA MET VAL ARG SEQRES 27 A 531 TYR HIS GLU GLY GLY ARG PHE CYS GLU LYS GLY GLU GLU SEQRES 28 A 531 TRP ASP GLN GLU SER ALA VAL PHE HIS LEU GLU HIS ALA SEQRES 29 A 531 ALA ASN LEU GLY GLU LEU GLU ALA ILE VAL GLY LEU GLY SEQRES 30 A 531 LEU MET TYR SER GLN LEU PRO HIS HIS ILE LEU ALA ASP SEQRES 31 A 531 VAL SER LEU LYS GLU THR GLU GLU ASN LYS THR LYS GLY SEQRES 32 A 531 PHE ASP TYR LEU LEU LYS ALA ALA GLU ALA GLY ASP ARG SEQRES 33 A 531 GLN SER MET ILE LEU VAL ALA ARG ALA PHE ASP SER GLY SEQRES 34 A 531 GLN ASN LEU SER PRO ASP ARG CYS GLN ASP TRP LEU GLU SEQRES 35 A 531 ALA LEU HIS TRP TYR ASN THR ALA LEU GLU MET THR ASP SEQRES 36 A 531 CYS ASP GLU GLY GLY GLU TYR ASP GLY MET GLN ASP GLU SEQRES 37 A 531 PRO ARG TYR MET MET LEU ALA ARG GLU ALA GLU MET LEU SEQRES 38 A 531 PHE THR GLY GLY TYR GLY LEU GLU LYS ASP PRO GLN ARG SEQRES 39 A 531 SER GLY ASP LEU TYR THR GLN ALA ALA GLU ALA ALA MET SEQRES 40 A 531 GLU ALA MET LYS GLY ARG LEU ALA ASN GLN TYR TYR GLN SEQRES 41 A 531 LYS ALA GLU GLU ALA TRP ALA GLN MET GLU GLU SEQRES 1 B 148 ALA ASP GLN LEU THR GLU GLU GLN ILE ALA GLU PHE LYS SEQRES 2 B 148 GLU ALA PHE SER LEU PHE ASP LYS ASP GLY ASP GLY THR SEQRES 3 B 148 ILE THR THR LYS GLU LEU GLY THR VAL MET ARG SER LEU SEQRES 4 B 148 GLY GLN ASN PRO THR GLU ALA GLU LEU GLN ASP MET ILE SEQRES 5 B 148 ASN GLU VAL ASP ALA ASP GLY ASN GLY THR ILE ASP PHE SEQRES 6 B 148 PRO GLU PHE LEU THR MET MET ALA ARG LYS MET LYS ASP SEQRES 7 B 148 THR ASP SER GLU GLU GLU ILE ARG GLU ALA PHE ARG VAL SEQRES 8 B 148 PHE ASP LYS ASP GLY ASN GLY TYR ILE SER ALA ALA GLU SEQRES 9 B 148 LEU ARG HIS VAL MET THR ASN LEU GLY GLU LYS LEU THR SEQRES 10 B 148 ASP GLU GLU VAL ASP GLU MET ILE ARG GLU ALA ASP ILE SEQRES 11 B 148 ASP GLY ASP GLY GLN VAL ASN TYR GLU GLU PHE VAL GLN SEQRES 12 B 148 MET MET THR ALA LYS MODRES 8GM5 TPO A 348 THR MODIFIED RESIDUE HET TPO A 348 11 HET ADP A 801 27 HET EKI A 802 21 HET ZN A 803 1 HET CA B 201 1 HET CA B 202 1 HETNAM TPO PHOSPHOTHREONINE HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM EKI 7-AMINO-1-CYCLOPROPYL-3-ETHYL-2,4-DIOXO-1,2,3,4- HETNAM 2 EKI TETRAHYDROPYRIDO[2,3-D]PYRIMIDINE-6-CARBOXAMIDE HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETSYN TPO PHOSPHONOTHREONINE FORMUL 1 TPO C4 H10 N O6 P FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 EKI C13 H15 N5 O3 FORMUL 5 ZN ZN 2+ FORMUL 6 CA 2(CA 2+) FORMUL 8 HOH *240(H2 O) HELIX 1 AA1 PHE A 81 MET A 95 1 15 HELIX 2 AA2 TRP A 99 ILE A 107 5 9 HELIX 3 AA3 GLN A 160 ALA A 164 5 5 HELIX 4 AA4 ASP A 177 ARG A 200 1 24 HELIX 5 AA5 LEU A 253 SER A 266 1 14 HELIX 6 AA6 GLY A 301 HIS A 312 1 12 HELIX 7 AA7 ASN A 315 MET A 321 1 7 HELIX 8 AA8 SER A 329 GLN A 338 1 10 HELIX 9 AA9 ALA A 501 LEU A 509 1 9 HELIX 10 AB1 SER A 521 GLY A 537 1 17 HELIX 11 AB2 ASP A 547 LEU A 561 1 15 HELIX 12 AB3 GLU A 563 SER A 575 1 13 HELIX 13 AB4 THR A 590 ALA A 607 1 18 HELIX 14 AB5 ASP A 609 GLY A 623 1 15 HELIX 15 AB6 ASP A 633 GLU A 646 1 14 HELIX 16 AB7 PRO A 663 GLY A 678 1 16 HELIX 17 AB8 ASP A 685 ALA A 703 1 19 HELIX 18 AB9 LYS A 705 GLN A 722 1 18 HELIX 19 AC1 SER B 81 ASP B 93 1 13 HELIX 20 AC2 SER B 101 LEU B 112 1 12 HELIX 21 AC3 THR B 117 ASP B 129 1 13 HELIX 22 AC4 TYR B 138 ALA B 147 1 10 SHEET 1 AA1 8 GLY A 139 ARG A 140 0 SHEET 2 AA1 8 ARG A 144 LYS A 151 -1 O CYS A 146 N GLY A 139 SHEET 3 AA1 8 SER A 165 TYR A 172 -1 O TYR A 167 N THR A 149 SHEET 4 AA1 8 LEU A 225 HIS A 230 -1 O HIS A 227 N LYS A 170 SHEET 5 AA1 8 CYS A 213 GLU A 216 -1 N ILE A 215 O PHE A 226 SHEET 6 AA1 8 GLU A 110 ASN A 118 -1 N HIS A 115 O ILE A 214 SHEET 7 AA1 8 GLU A 123 MET A 133 -1 O VAL A 129 N ALA A 112 SHEET 8 AA1 8 ARG A 144 LYS A 151 -1 O LYS A 150 N LYS A 132 SHEET 1 AA2 4 ASP A 208 ILE A 209 0 SHEET 2 AA2 4 LEU A 281 TYR A 282 1 O TYR A 282 N ASP A 208 SHEET 3 AA2 4 GLN A 276 VAL A 278 -1 N VAL A 278 O LEU A 281 SHEET 4 AA2 4 ILE A 237 LYS A 238 -1 N ILE A 237 O GLY A 277 SHEET 1 AA3 2 LEU A 270 VAL A 273 0 SHEET 2 AA3 2 GLN A 286 THR A 289 -1 O GLN A 286 N VAL A 273 SHEET 1 AA4 2 TYR B 99 ILE B 100 0 SHEET 2 AA4 2 VAL B 136 ASN B 137 -1 O VAL B 136 N ILE B 100 LINK C LYS A 347 N TPO A 348 1555 1555 1.33 LINK C TPO A 348 N ILE A 349 1555 1555 1.33 LINK ND1 HIS A 260 ZN ZN A 803 1555 1555 2.06 LINK NE2 HIS A 312 ZN ZN A 803 1555 1555 2.04 LINK SG CYS A 314 ZN ZN A 803 1555 1555 2.32 LINK SG CYS A 318 ZN ZN A 803 1555 1555 2.31 LINK O HOH A1007 CA CA B 201 1555 1555 2.50 LINK OD1 ASP B 93 CA CA B 201 1555 1555 2.29 LINK OD1 ASP B 95 CA CA B 201 1555 1555 2.25 LINK OD1 ASN B 97 CA CA B 201 1555 1555 2.40 LINK O TYR B 99 CA CA B 201 1555 1555 2.30 LINK OE1 GLU B 104 CA CA B 201 1555 1555 2.41 LINK OE2 GLU B 104 CA CA B 201 1555 1555 2.35 LINK OD1 ASP B 129 CA CA B 202 1555 1555 2.42 LINK OD1 ASP B 131 CA CA B 202 1555 1555 2.22 LINK OD1 ASP B 133 CA CA B 202 1555 1555 2.41 LINK O GLN B 135 CA CA B 202 1555 1555 2.24 LINK OE1 GLU B 140 CA CA B 202 1555 1555 2.51 LINK OE2 GLU B 140 CA CA B 202 1555 1555 2.63 CRYST1 80.909 61.041 88.958 90.00 111.26 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012360 0.000000 0.004809 0.00000 SCALE2 0.000000 0.016382 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012062 0.00000