HEADER VIRAL PROTEIN 25-AUG-22 8GP5 TITLE STRUCTURE OF X18 UFO PROTOMER IN COMPLEX WITH F6 FAB VHVL DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: F6 FAB VH DOMAIN; COMPND 3 CHAIN: E; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: F6 FAB VL DOMAIN; COMPND 7 CHAIN: F; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: X18 UFO ENV PROTOMER; COMPND 11 CHAIN: X; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 10029 KEYWDS ANTIBODY, HIV-1, ENV PROTEIN, COMPLEX, VIRAL PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR J.NIU,Y.W.XU,B.YANG REVDAT 2 30-AUG-23 8GP5 1 JRNL REVDAT 1 09-AUG-23 8GP5 0 JRNL AUTH J.NIU,Q.WANG,W.ZHAO,B.MENG,Y.XU,X.ZHANG,Y.FENG,Q.QI,Y.HAO, JRNL AUTH 2 X.ZHANG,Y.LIU,J.XIANG,Y.SHAO,B.YANG JRNL TITL STRUCTURES AND IMMUNE RECOGNITION OF ENV TRIMERS FROM TWO JRNL TITL 2 ASIA PREVALENT HIV-1 CRFS. JRNL REF NAT COMMUN V. 14 4676 2023 JRNL REFN ESSN 2041-1723 JRNL PMID 37542068 JRNL DOI 10.1038/S41467-023-40321-X REMARK 2 REMARK 2 RESOLUTION. 4.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 4.050 REMARK 3 NUMBER OF PARTICLES : 105239 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8GP5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-SEP-22. REMARK 100 THE DEPOSITION ID IS D_1300031331. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : X18 UFO PROTOMER IN COMPLEX REMARK 245 WITH F6 VHVL DOMAIN REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 8.00 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5000.00 REMARK 245 ILLUMINATION MODE : SPOT SCAN REMARK 245 NOMINAL MAGNIFICATION : 22500 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, X, N, A, B, C, D, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA E 114 REMARK 465 SER E 115 REMARK 465 THR E 116 REMARK 465 LYS E 117 REMARK 465 GLY E 118 REMARK 465 PRO E 119 REMARK 465 SER E 120 REMARK 465 VAL E 121 REMARK 465 PHE E 122 REMARK 465 PRO E 123 REMARK 465 LEU E 124 REMARK 465 ALA E 125 REMARK 465 PRO E 126 REMARK 465 SER E 127 REMARK 465 SER E 128 REMARK 465 LYS E 129 REMARK 465 SER E 130 REMARK 465 THR E 131 REMARK 465 SER E 132 REMARK 465 GLY E 133 REMARK 465 GLY E 134 REMARK 465 THR E 135 REMARK 465 ALA E 136 REMARK 465 ALA E 137 REMARK 465 LEU E 138 REMARK 465 GLY E 139 REMARK 465 CYS E 140 REMARK 465 LEU E 141 REMARK 465 VAL E 142 REMARK 465 LYS E 143 REMARK 465 ASP E 144 REMARK 465 TYR E 145 REMARK 465 PHE E 146 REMARK 465 PRO E 147 REMARK 465 GLU E 148 REMARK 465 PRO E 149 REMARK 465 VAL E 150 REMARK 465 THR E 151 REMARK 465 VAL E 152 REMARK 465 SER E 153 REMARK 465 TRP E 154 REMARK 465 ASN E 155 REMARK 465 SER E 156 REMARK 465 GLY E 157 REMARK 465 ALA E 158 REMARK 465 LEU E 159 REMARK 465 THR E 160 REMARK 465 SER E 161 REMARK 465 GLY E 162 REMARK 465 VAL E 163 REMARK 465 HIS E 164 REMARK 465 THR E 165 REMARK 465 PHE E 166 REMARK 465 PRO E 167 REMARK 465 ALA E 168 REMARK 465 VAL E 169 REMARK 465 LEU E 170 REMARK 465 GLN E 171 REMARK 465 SER E 172 REMARK 465 SER E 173 REMARK 465 GLY E 174 REMARK 465 LEU E 175 REMARK 465 TYR E 176 REMARK 465 SER E 177 REMARK 465 LEU E 178 REMARK 465 SER E 179 REMARK 465 SER E 180 REMARK 465 VAL E 181 REMARK 465 VAL E 182 REMARK 465 THR E 183 REMARK 465 VAL E 184 REMARK 465 PRO E 185 REMARK 465 SER E 186 REMARK 465 SER E 187 REMARK 465 SER E 188 REMARK 465 LEU E 189 REMARK 465 GLY E 190 REMARK 465 THR E 191 REMARK 465 GLN E 192 REMARK 465 THR E 193 REMARK 465 TYR E 194 REMARK 465 ILE E 195 REMARK 465 CYS E 196 REMARK 465 ASN E 197 REMARK 465 VAL E 198 REMARK 465 ASN E 199 REMARK 465 HIS E 200 REMARK 465 LYS E 201 REMARK 465 PRO E 202 REMARK 465 SER E 203 REMARK 465 ASN E 204 REMARK 465 THR E 205 REMARK 465 LYS E 206 REMARK 465 VAL E 207 REMARK 465 ASP E 208 REMARK 465 LYS E 209 REMARK 465 LYS E 210 REMARK 465 VAL E 211 REMARK 465 GLU E 212 REMARK 465 PRO E 213 REMARK 465 LYS E 214 REMARK 465 SER E 215 REMARK 465 CYS E 216 REMARK 465 ASP E 217 REMARK 465 LYS E 218 REMARK 465 THR E 219 REMARK 465 HIS E 220 REMARK 465 THR E 221 REMARK 465 ARG F 108 REMARK 465 THR F 109 REMARK 465 VAL F 110 REMARK 465 ALA F 111 REMARK 465 ALA F 112 REMARK 465 PRO F 113 REMARK 465 SER F 114 REMARK 465 VAL F 115 REMARK 465 PHE F 116 REMARK 465 ILE F 117 REMARK 465 PHE F 118 REMARK 465 PRO F 119 REMARK 465 PRO F 120 REMARK 465 SER F 121 REMARK 465 ASP F 122 REMARK 465 SER F 123 REMARK 465 GLN F 124 REMARK 465 LEU F 125 REMARK 465 LYS F 126 REMARK 465 SER F 127 REMARK 465 GLY F 128 REMARK 465 THR F 129 REMARK 465 ALA F 130 REMARK 465 SER F 131 REMARK 465 VAL F 132 REMARK 465 VAL F 133 REMARK 465 CYS F 134 REMARK 465 LEU F 135 REMARK 465 LEU F 136 REMARK 465 ASN F 137 REMARK 465 ASN F 138 REMARK 465 PHE F 139 REMARK 465 TYR F 140 REMARK 465 PRO F 141 REMARK 465 ARG F 142 REMARK 465 GLU F 143 REMARK 465 ALA F 144 REMARK 465 LYS F 145 REMARK 465 VAL F 146 REMARK 465 GLN F 147 REMARK 465 TRP F 148 REMARK 465 LYS F 149 REMARK 465 VAL F 150 REMARK 465 ASP F 151 REMARK 465 ASN F 152 REMARK 465 ALA F 153 REMARK 465 LEU F 154 REMARK 465 GLN F 155 REMARK 465 SER F 156 REMARK 465 GLY F 157 REMARK 465 ASN F 158 REMARK 465 SER F 159 REMARK 465 GLN F 160 REMARK 465 GLU F 161 REMARK 465 SER F 162 REMARK 465 VAL F 163 REMARK 465 THR F 164 REMARK 465 GLU F 165 REMARK 465 GLN F 166 REMARK 465 ASP F 167 REMARK 465 SER F 168 REMARK 465 LYS F 169 REMARK 465 ASP F 170 REMARK 465 SER F 171 REMARK 465 THR F 172 REMARK 465 TYR F 173 REMARK 465 SER F 174 REMARK 465 LEU F 175 REMARK 465 SER F 176 REMARK 465 SER F 177 REMARK 465 THR F 178 REMARK 465 LEU F 179 REMARK 465 THR F 180 REMARK 465 LEU F 181 REMARK 465 SER F 182 REMARK 465 LYS F 183 REMARK 465 ALA F 184 REMARK 465 ASP F 185 REMARK 465 TYR F 186 REMARK 465 GLU F 187 REMARK 465 LYS F 188 REMARK 465 HIS F 189 REMARK 465 LYS F 190 REMARK 465 VAL F 191 REMARK 465 TYR F 192 REMARK 465 ALA F 193 REMARK 465 CYS F 194 REMARK 465 GLU F 195 REMARK 465 VAL F 196 REMARK 465 THR F 197 REMARK 465 HIS F 198 REMARK 465 GLN F 199 REMARK 465 GLY F 200 REMARK 465 LEU F 201 REMARK 465 SER F 202 REMARK 465 SER F 203 REMARK 465 PRO F 204 REMARK 465 VAL F 205 REMARK 465 THR F 206 REMARK 465 LYS F 207 REMARK 465 SER F 208 REMARK 465 PHE F 209 REMARK 465 ASN F 210 REMARK 465 ARG F 211 REMARK 465 GLY F 212 REMARK 465 GLU F 213 REMARK 465 CYS F 214 REMARK 465 GLY F 215 REMARK 465 ALA X 58 REMARK 465 LYS X 59 REMARK 465 ALA X 60 REMARK 465 HIS X 61 REMARK 465 VAL X 62 REMARK 465 PRO X 63 REMARK 465 GLU X 64 REMARK 465 ALA X 65 REMARK 465 HIS X 66 REMARK 465 ASN X 67 REMARK 465 VAL X 68 REMARK 465 TRP X 69 REMARK 465 ALA X 70 REMARK 465 THR X 71 REMARK 465 HIS X 72 REMARK 465 LYS X 116A REMARK 465 PRO X 116B REMARK 465 CYS X 116C REMARK 465 VAL X 116D REMARK 465 LYS X 116E REMARK 465 LEU X 116F REMARK 465 THR X 116G REMARK 465 PRO X 116H REMARK 465 LEU X 116I REMARK 465 CYS X 116J REMARK 465 VAL X 116K REMARK 465 THR X 116L REMARK 465 LEU X 116M REMARK 465 ASN X 116N REMARK 465 CYS X 116O REMARK 465 THR X 116P REMARK 465 LYS X 116Q REMARK 465 ALA X 116R REMARK 465 ASN X 116S REMARK 465 LEU X 116T REMARK 465 THR X 116U REMARK 465 HIS X 116V REMARK 465 ASN X 116W REMARK 465 THR X 116X REMARK 465 THR X 116Y REMARK 465 ASN X 116Z REMARK 465 ASP X 117A REMARK 465 LYS X 117B REMARK 465 ASN X 117C REMARK 465 GLY X 117D REMARK 465 THR X 117E REMARK 465 GLY X 117F REMARK 465 ASN X 117G REMARK 465 ILE X 117H REMARK 465 THR X 117I REMARK 465 ASP X 117J REMARK 465 GLU X 117K REMARK 465 VAL X 117L REMARK 465 LYS X 117M REMARK 465 ILE X 117N REMARK 465 GLY X 117O REMARK 465 ASN X 117P REMARK 465 ILE X 117Q REMARK 465 THR X 117R REMARK 465 ASP X 117S REMARK 465 GLU X 117T REMARK 465 VAL X 117U REMARK 465 LYS X 117V REMARK 465 ASN X 117W REMARK 465 CYS X 117X REMARK 465 THR X 117Y REMARK 465 PHE X 117Z REMARK 465 ASN X 118A REMARK 465 MET X 118B REMARK 465 THR X 118C REMARK 465 THR X 118D REMARK 465 GLU X 118E REMARK 465 ILE X 118F REMARK 465 ARG X 118G REMARK 465 ASP X 118H REMARK 465 LYS X 118I REMARK 465 GLN X 118J REMARK 465 GLN X 118K REMARK 465 LYS X 118L REMARK 465 VAL X 118M REMARK 465 HIS X 118N REMARK 465 ALA X 118O REMARK 465 LEU X 118P REMARK 465 PHE X 118Q REMARK 465 TYR X 118R REMARK 465 ALA X 118S REMARK 465 LEU X 118T REMARK 465 ASP X 118U REMARK 465 ILE X 118V REMARK 465 VAL X 118W REMARK 465 GLN X 118X REMARK 465 MET X 118Y REMARK 465 LYS X 118Z REMARK 465 GLU X 119A REMARK 465 ASN X 119B REMARK 465 GLY X 119C REMARK 465 SER X 119D REMARK 465 GLU X 119E REMARK 465 TYR X 119F REMARK 465 ARG X 119G REMARK 465 LEU X 119H REMARK 465 ILE X 119I REMARK 465 SER X 119J REMARK 465 CYS X 119K REMARK 465 ASN X 119L REMARK 465 THR X 119M REMARK 465 SER X 119N REMARK 465 VAL X 119O REMARK 465 ILE X 119P REMARK 465 LYS X 119Q REMARK 465 GLN X 119R REMARK 465 ALA X 119S REMARK 465 CYS X 119T REMARK 465 PRO X 119U REMARK 465 LYS X 119V REMARK 465 ILE X 119W REMARK 465 THR X 298 REMARK 465 ARG X 299 REMARK 465 PRO X 300 REMARK 465 SER X 301 REMARK 465 ASN X 302 REMARK 465 ASN X 303 REMARK 465 THR X 304 REMARK 465 ARG X 305 REMARK 465 THR X 306 REMARK 465 SER X 307 REMARK 465 ILE X 308 REMARK 465 ARG X 309 REMARK 465 ILE X 310 REMARK 465 GLY X 311 REMARK 465 PRO X 312 REMARK 465 GLY X 313 REMARK 465 GLN X 314 REMARK 465 MET X 315 REMARK 465 PHE X 316 REMARK 465 TYR X 317 REMARK 465 ARG X 318 REMARK 465 THR X 319 REMARK 465 GLY X 320 REMARK 465 ASP X 321 REMARK 465 ILE X 322 REMARK 465 ILE X 323 REMARK 465 GLY X 324 REMARK 465 ASP X 325 REMARK 465 ILE X 326 REMARK 465 ARG X 327 REMARK 465 LYS X 328 REMARK 465 ALA X 329 REMARK 465 LYS X 403 REMARK 465 ASN X 404 REMARK 465 GLY X 405 REMARK 465 THR X 406 REMARK 465 ARG X 407 REMARK 465 GLU X 408 REMARK 465 ASN X 425 REMARK 465 MET X 426 REMARK 465 TRP X 427 REMARK 465 GLN X 428 REMARK 465 GLY X 429 REMARK 465 VAL X 430 REMARK 465 GLY X 431 REMARK 465 GLN X 432 REMARK 465 ALA X 433 REMARK 465 MET X 434 REMARK 465 TYR X 435 REMARK 465 ALA X 436 REMARK 465 PRO X 437 REMARK 465 GLY X 459 REMARK 465 ASN X 460 REMARK 465 GLY X 461 REMARK 465 ASN X 462 REMARK 465 THR X 463 REMARK 465 ARG X 503A REMARK 465 VAL X 503B REMARK 465 VAL X 503C REMARK 465 ASP X 503D REMARK 465 GLY X 503E REMARK 465 GLY X 503F REMARK 465 GLY X 503G REMARK 465 GLY X 503H REMARK 465 SER X 503I REMARK 465 GLY X 503J REMARK 465 GLY X 503K REMARK 465 GLY X 503L REMARK 465 GLY X 503M REMARK 465 SER X 503N REMARK 465 ALA X 503O REMARK 465 VAL X 503P REMARK 465 GLY X 503Q REMARK 465 ILE X 503R REMARK 465 GLY X 503S REMARK 465 ALA X 503T REMARK 465 MET X 503U REMARK 465 ILE X 503V REMARK 465 PHE X 503W REMARK 465 LEU X 551 REMARK 465 SER X 552 REMARK 465 GLY X 553 REMARK 465 ASN X 554 REMARK 465 PRO X 555 REMARK 465 ASP X 556 REMARK 465 GLU X 654 REMARK 465 ARG X 655 REMARK 465 ASN X 656 REMARK 465 GLU X 657 REMARK 465 LYS X 658 REMARK 465 ASP X 659 REMARK 465 LEU X 660 REMARK 465 LEU X 661 REMARK 465 GLU X 662 REMARK 465 LEU X 663 REMARK 465 ASP X 664 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER E 15 45.39 71.80 REMARK 500 ARG E 94 117.55 -164.11 REMARK 500 TYR F 32 35.90 -97.50 REMARK 500 ASP F 60 -1.91 70.37 REMARK 500 SER F 67 141.74 -170.44 REMARK 500 GLN X 258 -8.32 71.71 REMARK 500 ASN X 262 14.28 59.94 REMARK 500 ALA X 281 48.02 -88.84 REMARK 500 PRO X 470 -177.29 -69.21 REMARK 500 PHE X 522 -7.94 67.55 REMARK 500 ASN X 607 58.05 -91.60 REMARK 500 ASN X 616 43.72 -102.73 REMARK 500 ASN X 624 11.05 -141.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-34190 RELATED DB: EMDB REMARK 900 STRUCTURE OF X18 UFO PROTOMER IN COMPLEX WITH F6 FAB VHVL DOMAIN DBREF 8GP5 E 1 221 PDB 8GP5 8GP5 1 221 DBREF 8GP5 F 1 215 PDB 8GP5 8GP5 1 215 DBREF 8GP5 X 33 664 PDB 8GP5 8GP5 33 664 SEQRES 1 E 232 GLN VAL GLN LEU GLN GLN TRP GLY THR GLY LEU LEU LYS SEQRES 2 E 232 PRO SER GLU THR LEU SER LEU THR CYS ALA VAL TYR GLY SEQRES 3 E 232 VAL SER LEU ARG GLY TYR TYR TRP THR TRP ILE ARG GLN SEQRES 4 E 232 SER PRO LYS LYS GLY LEU GLU TRP ILE GLY GLU ILE ASP SEQRES 5 E 232 GLU ILE GLY ARG THR LYS TYR SER GLN SER LEU ARG SER SEQRES 6 E 232 ARG ALA THR LEU SER ILE ASP THR SER LYS LYS GLN PHE SEQRES 7 E 232 SER LEU ARG LEU THR SER VAL THR ALA ALA ASP MET ALA SEQRES 8 E 232 THR TYR TYR CYS ALA ARG TRP ARG LEU MET MET VAL ASP SEQRES 9 E 232 GLU VAL THR ARG HIS GLY MET ASP VAL TRP SER GLN GLY SEQRES 10 E 232 THR MET VAL THR VAL SER SER ALA SER THR LYS GLY PRO SEQRES 11 E 232 SER VAL PHE PRO LEU ALA PRO SER SER LYS SER THR SER SEQRES 12 E 232 GLY GLY THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR SEQRES 13 E 232 PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA SEQRES 14 E 232 LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SEQRES 15 E 232 SER SER GLY LEU TYR SER LEU SER SER VAL VAL THR VAL SEQRES 16 E 232 PRO SER SER SER LEU GLY THR GLN THR TYR ILE CYS ASN SEQRES 17 E 232 VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP LYS LYS SEQRES 18 E 232 VAL GLU PRO LYS SER CYS ASP LYS THR HIS THR SEQRES 1 F 220 ASP ILE VAL MET THR GLN SER PRO LEU SER LEU SER VAL SEQRES 2 F 220 ALA PRO GLY GLU ALA ALA SER ILE SER CYS ARG SER THR SEQRES 3 F 220 GLN SER LEU LEU ASN ARG ASN GLY ASP ASN TYR LEU GLU SEQRES 4 F 220 TRP TYR LEU ARG ARG PRO GLY ARG SER PRO GLN LEU LEU SEQRES 5 F 220 ILE TYR LEU GLY SER GLU ARG ALA LEU GLY VAL PRO ASP SEQRES 6 F 220 ARG PHE SER GLY SER GLY SER GLY ARG ASP PHE THR LEU SEQRES 7 F 220 LYS ILE SER ARG VAL GLU ALA GLN ASP VAL GLY THR TYR SEQRES 8 F 220 TYR CYS LEU GLN THR ARG GLN GLY ALA PHE THR PHE GLY SEQRES 9 F 220 GLN GLY THR LYS LEU GLU ILE LYS ARG THR VAL ALA ALA SEQRES 10 F 220 PRO SER VAL PHE ILE PHE PRO PRO SER ASP SER GLN LEU SEQRES 11 F 220 LYS SER GLY THR ALA SER VAL VAL CYS LEU LEU ASN ASN SEQRES 12 F 220 PHE TYR PRO ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP SEQRES 13 F 220 ASN ALA LEU GLN SER GLY ASN SER GLN GLU SER VAL THR SEQRES 14 F 220 GLU GLN ASP SER LYS ASP SER THR TYR SER LEU SER SER SEQRES 15 F 220 THR LEU THR LEU SER LYS ALA ASP TYR GLU LYS HIS LYS SEQRES 16 F 220 VAL TYR ALA CYS GLU VAL THR HIS GLN GLY LEU SER SER SEQRES 17 F 220 PRO VAL THR LYS SER PHE ASN ARG GLY GLU CYS GLY SEQRES 1 X 622 ASN LEU TRP VAL THR VAL TYR TYR GLY VAL PRO VAL TRP SEQRES 2 X 622 ARG ASP ALA ASP THR THR LEU PHE CYS ALA SER ASP ALA SEQRES 3 X 622 LYS ALA HIS VAL PRO GLU ALA HIS ASN VAL TRP ALA THR SEQRES 4 X 622 HIS ALA CYS VAL PRO THR ASP PRO ASN PRO GLN GLU ILE SEQRES 5 X 622 PRO LEU GLU ASN VAL THR GLU ASN PHE ASN MET TRP LYS SEQRES 6 X 622 ASN ASN MET VAL GLU GLN MET GLN GLU ASP VAL ILE SER SEQRES 7 X 622 LEU TRP ASP GLN SER LEU LYS PRO CYS VAL LYS LEU THR SEQRES 8 X 622 PRO LEU CYS VAL THR LEU ASN CYS THR LYS ALA ASN LEU SEQRES 9 X 622 THR HIS ASN THR THR ASN ASP LYS ASN GLY THR GLY ASN SEQRES 10 X 622 ILE THR ASP GLU VAL LYS ILE GLY ASN ILE THR ASP GLU SEQRES 11 X 622 VAL LYS ASN CYS THR PHE ASN MET THR THR GLU ILE ARG SEQRES 12 X 622 ASP LYS GLN GLN LYS VAL HIS ALA LEU PHE TYR ALA LEU SEQRES 13 X 622 ASP ILE VAL GLN MET LYS GLU ASN GLY SER GLU TYR ARG SEQRES 14 X 622 LEU ILE SER CYS ASN THR SER VAL ILE LYS GLN ALA CYS SEQRES 15 X 622 PRO LYS ILE SER PHE ASP PRO ILE PRO ILE HIS TYR CYS SEQRES 16 X 622 ALA PRO ALA GLY TYR ALA ILE LEU LYS CYS ASN ASP LYS SEQRES 17 X 622 LYS PHE ASN GLY THR GLY PRO CYS LYS ASN VAL SER THR SEQRES 18 X 622 VAL GLN CYS THR HIS GLY ILE LYS PRO VAL VAL SER THR SEQRES 19 X 622 GLN LEU LEU LEU ASN GLY SER LEU ALA GLU GLU GLU ILE SEQRES 20 X 622 ILE ILE ARG SER GLU ASN LEU THR ASN ASN ALA LYS ASN SEQRES 21 X 622 ILE ILE VAL HIS LEU ASN LYS SER VAL SER ILE SER CYS SEQRES 22 X 622 THR ARG PRO SER ASN ASN THR ARG THR SER ILE ARG ILE SEQRES 23 X 622 GLY PRO GLY GLN MET PHE TYR ARG THR GLY ASP ILE ILE SEQRES 24 X 622 GLY ASP ILE ARG LYS ALA TYR CYS GLU LEU ASN GLY THR SEQRES 25 X 622 GLU TRP ASN GLU THR LEU ASN LYS VAL THR GLU LYS LEU SEQRES 26 X 622 LYS GLU HIS PHE ASN LYS THR ILE VAL PHE GLN PRO PRO SEQRES 27 X 622 SER GLY GLY ASP LEU GLU THR THR MET HIS HIS PHE ASN SEQRES 28 X 622 CYS ARG GLY GLU PHE PHE TYR CYS ASN THR THR LYS LEU SEQRES 29 X 622 PHE ASN THR LYS ASN GLY THR ARG GLU GLU PHE ASN GLY SEQRES 30 X 622 THR ILE ILE LEU PRO CYS ARG ILE LYS GLN ILE VAL ASN SEQRES 31 X 622 MET TRP GLN GLY VAL GLY GLN ALA MET TYR ALA PRO PRO SEQRES 32 X 622 ILE SER GLY ILE ILE ASN CYS THR SER ASN ILE THR GLY SEQRES 33 X 622 ILE ILE LEU THR ARG ASP GLY GLY ASN GLY ASN THR THR SEQRES 34 X 622 ASP GLU THR PHE ARG PRO GLY GLY GLY ASN ILE LYS ASP SEQRES 35 X 622 ASN TRP ARG SER GLU LEU TYR LYS TYR LYS VAL VAL GLN SEQRES 36 X 622 ILE GLU PRO LEU GLY ILE ALA PRO THR ARG CYS LYS ARG SEQRES 37 X 622 ARG VAL VAL ASP GLY GLY GLY GLY SER GLY GLY GLY GLY SEQRES 38 X 622 SER ALA VAL GLY ILE GLY ALA MET ILE PHE GLY PHE LEU SEQRES 39 X 622 GLY ALA ALA GLY SER THR MET GLY ALA ALA SER ILE THR SEQRES 40 X 622 LEU THR VAL GLN ALA ARG GLN LEU LEU SER GLY ASN PRO SEQRES 41 X 622 ASP TRP LEU PRO ASP MET THR VAL TRP GLY ILE LYS GLN SEQRES 42 X 622 LEU GLN ALA ARG VAL LEU ALA VAL GLU ARG TYR LEU LYS SEQRES 43 X 622 ASP GLN LYS PHE LEU GLY LEU TRP GLY CYS SER GLY LYS SEQRES 44 X 622 ILE ILE CYS CYS THR ASN VAL PRO TRP ASN SER THR TRP SEQRES 45 X 622 SER ASN LYS SER TYR GLU GLU ILE TRP ASN ASN MET THR SEQRES 46 X 622 TRP ILE GLU TRP GLU LYS GLU ILE SER ASN TYR THR ASN SEQRES 47 X 622 ARG ILE TYR ASP LEU LEU THR GLU SER GLN ASN GLN GLN SEQRES 48 X 622 GLU ARG ASN GLU LYS ASP LEU LEU GLU LEU ASP HET NAG N 1 14 HET NAG N 2 14 HET BMA N 3 11 HET MAN N 4 11 HET MAN N 5 11 HET NAG A 1 14 HET NAG A 2 14 HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET MAN B 4 11 HET MAN B 5 11 HET NAG C 1 14 HET NAG C 2 14 HET NAG D 1 14 HET NAG D 2 14 HET NAG G 1 14 HET NAG G 2 14 HET NAG H 1 14 HET NAG H 2 14 HET NAG X 701 14 HET NAG X 702 14 HET NAG X 703 14 HET NAG X 704 14 HET NAG X 705 14 HET NAG X 706 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 4 NAG 20(C8 H15 N O6) FORMUL 4 BMA 2(C6 H12 O6) FORMUL 4 MAN 4(C6 H12 O6) HELIX 1 AA1 TRP X 96 ASN X 98 5 3 HELIX 2 AA2 ASN X 99 GLN X 114 1 16 HELIX 3 AA3 GLY X 335 GLU X 351 1 17 HELIX 4 AA4 ILE X 475 TRP X 479 5 5 HELIX 5 AA5 THR X 529 THR X 536 1 8 HELIX 6 AA6 GLY X 572 TRP X 596 1 25 HELIX 7 AA7 SER X 618 ASN X 625 1 8 HELIX 8 AA8 THR X 627 SER X 636 1 10 HELIX 9 AA9 TYR X 638 GLN X 653 1 16 SHEET 1 AA1 4 GLN E 3 TRP E 7 0 SHEET 2 AA1 4 LEU E 18 TYR E 25 -1 O ALA E 23 N GLN E 5 SHEET 3 AA1 4 GLN E 77 LEU E 82 -1 O LEU E 80 N LEU E 20 SHEET 4 AA1 4 ALA E 67 ASP E 72 -1 N ASP E 72 O GLN E 77 SHEET 1 AA2 2 LEU E 11 LEU E 12 0 SHEET 2 AA2 2 THR E 110 VAL E 111 1 O THR E 110 N LEU E 12 SHEET 1 AA3 3 TRP E 34 SER E 40 0 SHEET 2 AA3 3 GLY E 44 ILE E 51 -1 O ILE E 51 N TRP E 34 SHEET 3 AA3 3 THR E 57 TYR E 59 -1 O LYS E 58 N GLU E 50 SHEET 1 AA4 2 TRP E 95 MET E 99 0 SHEET 2 AA4 2 VAL E 100C MET E 100H-1 O THR E 100D N MET E 98 SHEET 1 AA5 4 THR F 5 SER F 7 0 SHEET 2 AA5 4 ALA F 19 ARG F 24 -1 O ARG F 24 N THR F 5 SHEET 3 AA5 4 ASP F 70 ILE F 75 -1 O PHE F 71 N CYS F 23 SHEET 4 AA5 4 PHE F 62 SER F 67 -1 N SER F 65 O THR F 72 SHEET 1 AA6 5 SER F 10 SER F 12 0 SHEET 2 AA6 5 THR F 102 GLU F 105 1 O LYS F 103 N LEU F 11 SHEET 3 AA6 5 GLY F 84 GLN F 90 -1 N GLY F 84 O LEU F 104 SHEET 4 AA6 5 LEU F 33 ARG F 38 -1 N TYR F 36 O TYR F 87 SHEET 5 AA6 5 GLN F 45 ILE F 48 -1 O ILE F 48 N TRP F 35 SHEET 1 AA7 3 GLY X 495 THR X 499 0 SHEET 2 AA7 3 TRP X 35 TYR X 39 -1 N TRP X 35 O THR X 499 SHEET 3 AA7 3 CYS X 604 PRO X 609 -1 O VAL X 608 N VAL X 36 SHEET 1 AA8 5 TRP X 45 ASP X 47 0 SHEET 2 AA8 5 TYR X 486 ILE X 491 -1 O GLN X 490 N ARG X 46 SHEET 3 AA8 5 TYR X 223 CYS X 228 -1 N LEU X 226 O LYS X 487 SHEET 4 AA8 5 VAL X 242 VAL X 245 -1 O SER X 243 N LYS X 227 SHEET 5 AA8 5 GLU X 83 PRO X 85 -1 N ILE X 84 O THR X 244 SHEET 1 AA9 2 PHE X 53 ALA X 55 0 SHEET 2 AA9 2 HIS X 216 CYS X 218 -1 O HIS X 216 N ALA X 55 SHEET 1 AB1 2 GLU X 91 ASN X 94 0 SHEET 2 AB1 2 THR X 236 CYS X 239 -1 O CYS X 239 N GLU X 91 SHEET 1 AB2 5 LEU X 259 LEU X 261 0 SHEET 2 AB2 5 CYS X 445 THR X 455 -1 O THR X 450 N LEU X 260 SHEET 3 AB2 5 ILE X 284 CYS X 296 -1 N ILE X 284 O LEU X 454 SHEET 4 AB2 5 GLU X 466 PRO X 470 0 SHEET 5 AB2 5 ILE X 359 PHE X 361 1 N VAL X 360 O PHE X 468 SHEET 1 AB3 5 ILE X 271 ARG X 273 0 SHEET 2 AB3 5 ILE X 284 CYS X 296 -1 O ILE X 285 N ARG X 273 SHEET 3 AB3 5 CYS X 445 THR X 455 -1 O LEU X 454 N ILE X 284 SHEET 4 AB3 5 CYS X 331 ASN X 334 0 SHEET 5 AB3 5 THR X 413 LEU X 416 -1 O ILE X 414 N LEU X 333 SHEET 1 AB4 3 HIS X 374 CYS X 378 0 SHEET 2 AB4 3 GLU X 381 CYS X 385 -1 O PHE X 383 N PHE X 376 SHEET 3 AB4 3 CYS X 418 ILE X 420 -1 O ARG X 419 N TYR X 384 SSBOND 1 CYS E 22 CYS E 92 1555 1555 2.03 SSBOND 2 CYS F 23 CYS F 88 1555 1555 2.04 SSBOND 3 CYS X 54 CYS X 74 1555 1555 2.03 SSBOND 4 CYS X 218 CYS X 247 1555 1555 2.04 SSBOND 5 CYS X 228 CYS X 239 1555 1555 2.03 SSBOND 6 CYS X 296 CYS X 331 1555 1555 2.03 SSBOND 7 CYS X 378 CYS X 445 1555 1555 2.03 SSBOND 8 CYS X 385 CYS X 418 1555 1555 2.03 SSBOND 9 CYS X 501 CYS X 605 1555 1555 2.03 SSBOND 10 CYS X 598 CYS X 604 1555 1555 2.03 LINK ND2 ASN X 88 C1 NAG N 1 1555 1555 1.44 LINK ND2 ASN X 234 C1 NAG A 1 1555 1555 1.44 LINK ND2 ASN X 241 C1 NAG X 701 1555 1555 1.44 LINK ND2 ASN X 262 C1 NAG B 1 1555 1555 1.44 LINK ND2 ASN X 276 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN X 289 C1 NAG X 702 1555 1555 1.44 LINK ND2 ASN X 334 C1 NAG D 1 1555 1555 1.44 LINK ND2 ASN X 339 C1 NAG X 704 1555 1555 1.45 LINK ND2 ASN X 386 C1 NAG G 1 1555 1555 1.44 LINK ND2 ASN X 444 C1 NAG X 705 1555 1555 1.46 LINK ND2 ASN X 448 C1 NAG X 703 1555 1555 1.44 LINK ND2 ASN X 611 C1 NAG X 706 1555 1555 1.44 LINK ND2 ASN X 625 C1 NAG H 1 1555 1555 1.44 LINK O4 NAG N 1 C1 NAG N 2 1555 1555 1.44 LINK O4 NAG N 2 C1 BMA N 3 1555 1555 1.44 LINK O3 BMA N 3 C1 MAN N 4 1555 1555 1.44 LINK O6 BMA N 3 C1 MAN N 5 1555 1555 1.44 LINK O4 NAG A 1 C1 NAG A 2 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.44 LINK O3 BMA B 3 C1 MAN B 4 1555 1555 1.45 LINK O6 BMA B 3 C1 MAN B 5 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 LINK O4 NAG G 1 C1 NAG G 2 1555 1555 1.45 LINK O4 NAG H 1 C1 NAG H 2 1555 1555 1.44 CISPEP 1 SER F 7 PRO F 8 0 -9.77 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000