HEADER TRANSFERASE 31-AUG-22 8GQZ TITLE CRYSTAL STRUCTURE OF MITOCHONDRIAL CITRATE SYNTHASE (CIT1) FROM TITLE 2 SACCHAROMYCES CEREVISIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CITRATE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: CIT1, GI527_G0005109; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TCA CYCLE, MITOCHONDRIAL PROTEIN, CITRATE METABOLISM, SCFUCC1 KEYWDS 2 UBIQUITIN LIGASE, PROTEASOME-DEPENDENT DEGRADATION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.NISHIO,K.NAKATSUKASA,T.KAMURA,T.MIZUSHIMA REVDAT 1 26-APR-23 8GQZ 0 JRNL AUTH K.NISHIO,T.KAWARASAKI,Y.SUGIURA,S.MATSUMOTO,A.KONOSHIMA, JRNL AUTH 2 Y.TAKANO,M.HAYASHI,F.OKUMURA,T.KAMURA,T.MIZUSHIMA, JRNL AUTH 3 K.NAKATSUKASA JRNL TITL DEFECTIVE IMPORT OF MITOCHONDRIAL METABOLIC ENZYME ELICITS JRNL TITL 2 ECTOPIC METABOLIC STRESS. JRNL REF SCI ADV V. 9 F1956 2023 JRNL REFN ESSN 2375-2548 JRNL PMID 37058555 JRNL DOI 10.1126/SCIADV.ADF1956 REMARK 2 REMARK 2 RESOLUTION. 1.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 173475 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.160 REMARK 3 FREE R VALUE TEST SET COUNT : 3821 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.6400 - 4.2600 0.89 11214 131 0.1499 0.1491 REMARK 3 2 4.2600 - 3.3800 0.98 12275 144 0.1356 0.1639 REMARK 3 3 3.3800 - 2.9500 1.00 12506 150 0.1467 0.1808 REMARK 3 4 2.9500 - 2.6800 1.00 12542 143 0.1569 0.1772 REMARK 3 5 2.6800 - 2.4900 1.00 12484 147 0.1556 0.1876 REMARK 3 6 2.4900 - 2.3400 1.00 12535 150 0.1621 0.1908 REMARK 3 7 2.3400 - 2.2300 1.00 12515 147 0.1598 0.1535 REMARK 3 8 2.2300 - 2.1300 1.00 12540 144 0.1558 0.2529 REMARK 3 9 2.1300 - 2.0500 1.00 12524 147 0.1608 0.1855 REMARK 3 10 2.0500 - 1.9800 1.00 12508 149 0.1723 0.2000 REMARK 3 11 1.9800 - 1.9200 0.99 12443 146 0.1731 0.2104 REMARK 3 12 1.9200 - 1.8600 0.99 12379 145 0.1783 0.2759 REMARK 3 13 1.8600 - 1.8100 0.99 12351 148 0.1852 0.2089 REMARK 3 14 1.8100 - 1.7700 0.98 12337 148 0.1803 0.2068 REMARK 3 15 1.7700 - 1.7300 0.98 12204 142 0.1805 0.2205 REMARK 3 16 1.7300 - 1.6900 0.97 12145 142 0.1838 0.2304 REMARK 3 17 1.6900 - 1.6600 0.96 12152 141 0.1910 0.2159 REMARK 3 18 1.6600 - 1.6300 0.96 11952 143 0.1916 0.1957 REMARK 3 19 1.6300 - 1.6000 0.95 11820 135 0.1965 0.2228 REMARK 3 20 1.6000 - 1.5700 0.94 11930 138 0.2033 0.2912 REMARK 3 21 1.5700 - 1.5400 0.94 11742 136 0.2144 0.2675 REMARK 3 22 1.5400 - 1.5200 0.93 11604 135 0.2240 0.2508 REMARK 3 23 1.5200 - 1.5000 0.92 11618 137 0.2272 0.3172 REMARK 3 24 1.5000 - 1.4800 0.92 11580 141 0.2378 0.3234 REMARK 3 25 1.4800 - 1.4600 0.92 11455 131 0.2503 0.2631 REMARK 3 26 1.4600 - 1.4400 0.92 11510 130 0.2647 0.3151 REMARK 3 27 1.4400 - 1.4200 0.90 11311 131 0.2741 0.2869 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.142 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.375 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.019 7236 REMARK 3 ANGLE : 1.551 9821 REMARK 3 CHIRALITY : 0.116 1082 REMARK 3 PLANARITY : 0.011 1259 REMARK 3 DIHEDRAL : 13.130 2712 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8GQZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-SEP-22. REMARK 100 THE DEPOSITION ID IS D_1300031919. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 173510 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.420 REMARK 200 RESOLUTION RANGE LOW (A) : 31.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.3600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.47 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 140 MM CA(OAC)2, 70 MM TRIS PH 7.0, REMARK 280 14% (W/V) PEG 3000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.16400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.43500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.19900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 73.43500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.16400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.19900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -126.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ALA A 3 REMARK 465 ILE A 4 REMARK 465 LEU A 5 REMARK 465 SER A 6 REMARK 465 THR A 7 REMARK 465 THR A 8 REMARK 465 SER A 9 REMARK 465 LYS A 10 REMARK 465 SER A 11 REMARK 465 PHE A 12 REMARK 465 LEU A 13 REMARK 465 SER A 14 REMARK 465 ARG A 15 REMARK 465 GLY A 16 REMARK 465 SER A 17 REMARK 465 THR A 18 REMARK 465 ARG A 19 REMARK 465 GLN A 20 REMARK 465 CYS A 21 REMARK 465 GLN A 22 REMARK 465 ASN A 23 REMARK 465 MET A 24 REMARK 465 GLN A 25 REMARK 465 LYS A 26 REMARK 465 ALA A 27 REMARK 465 LEU A 28 REMARK 465 PHE A 29 REMARK 465 ALA A 30 REMARK 465 LEU A 31 REMARK 465 LEU A 32 REMARK 465 ASN A 33 REMARK 465 ALA A 34 REMARK 465 ARG A 35 REMARK 465 HIS A 36 REMARK 465 TYR A 37 REMARK 465 ASN A 479 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ALA B 3 REMARK 465 ILE B 4 REMARK 465 LEU B 5 REMARK 465 SER B 6 REMARK 465 THR B 7 REMARK 465 THR B 8 REMARK 465 SER B 9 REMARK 465 LYS B 10 REMARK 465 SER B 11 REMARK 465 PHE B 12 REMARK 465 LEU B 13 REMARK 465 SER B 14 REMARK 465 ARG B 15 REMARK 465 GLY B 16 REMARK 465 SER B 17 REMARK 465 THR B 18 REMARK 465 ARG B 19 REMARK 465 GLN B 20 REMARK 465 CYS B 21 REMARK 465 GLN B 22 REMARK 465 ASN B 23 REMARK 465 MET B 24 REMARK 465 GLN B 25 REMARK 465 LYS B 26 REMARK 465 ALA B 27 REMARK 465 LEU B 28 REMARK 465 PHE B 29 REMARK 465 ALA B 30 REMARK 465 LEU B 31 REMARK 465 LEU B 32 REMARK 465 ASN B 33 REMARK 465 ALA B 34 REMARK 465 ARG B 35 REMARK 465 HIS B 36 REMARK 465 TYR B 37 REMARK 465 SER B 38 REMARK 465 SER B 39 REMARK 465 ALA B 40 REMARK 465 SER B 41 REMARK 465 LYS B 478 REMARK 465 ASN B 479 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 466 CB GLU A 466 CG -0.128 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 166 CA - CB - CG ANGL. DEV. = 14.2 DEGREES REMARK 500 PHE A 435 CB - CG - CD1 ANGL. DEV. = -4.5 DEGREES REMARK 500 ASP B 365 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 ARG B 367 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 TYR B 431 CB - CG - CD2 ANGL. DEV. = -4.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 234 -140.22 -124.40 REMARK 500 HIS A 276 72.09 -155.65 REMARK 500 GLU A 277 -177.34 65.22 REMARK 500 PHE A 379 59.91 -158.46 REMARK 500 ASN A 407 75.74 50.13 REMARK 500 ARG A 459 71.50 -156.83 REMARK 500 LYS B 234 -136.16 -130.03 REMARK 500 HIS B 276 72.09 -157.72 REMARK 500 GLU B 277 -176.39 61.74 REMARK 500 HIS B 312 -51.25 -120.20 REMARK 500 VAL B 360 -53.00 -128.76 REMARK 500 PHE B 379 62.16 -158.28 REMARK 500 ARG B 459 72.74 -155.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B1083 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH B1084 DISTANCE = 6.49 ANGSTROMS REMARK 525 HOH B1085 DISTANCE = 6.49 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 501 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 173 OD1 REMARK 620 2 ASP A 173 OD2 47.7 REMARK 620 3 HOH A 641 O 113.2 68.8 REMARK 620 4 HOH A 922 O 71.6 115.5 175.1 REMARK 620 5 HOH A 946 O 79.2 97.5 92.4 89.2 REMARK 620 6 HOH B1007 O 120.3 117.2 103.7 72.6 145.0 REMARK 620 N 1 2 3 4 5 DBREF1 8GQZ A 1 479 UNP A0A6A5Q7J3_YEASX DBREF2 8GQZ A A0A6A5Q7J3 1 479 DBREF1 8GQZ B 1 479 UNP A0A6A5Q7J3_YEASX DBREF2 8GQZ B A0A6A5Q7J3 1 479 SEQRES 1 A 479 MET SER ALA ILE LEU SER THR THR SER LYS SER PHE LEU SEQRES 2 A 479 SER ARG GLY SER THR ARG GLN CYS GLN ASN MET GLN LYS SEQRES 3 A 479 ALA LEU PHE ALA LEU LEU ASN ALA ARG HIS TYR SER SER SEQRES 4 A 479 ALA SER GLU GLN THR LEU LYS GLU ARG PHE ALA GLU ILE SEQRES 5 A 479 ILE PRO ALA LYS ALA GLU GLU ILE LYS LYS PHE LYS LYS SEQRES 6 A 479 GLU HIS GLY LYS THR VAL ILE GLY GLU VAL LEU LEU GLU SEQRES 7 A 479 GLN ALA TYR GLY GLY MET ARG GLY ILE LYS GLY LEU VAL SEQRES 8 A 479 TRP GLU GLY SER VAL LEU ASP PRO GLU GLU GLY ILE ARG SEQRES 9 A 479 PHE ARG GLY ARG THR ILE PRO GLU ILE GLN ARG GLU LEU SEQRES 10 A 479 PRO LYS ALA GLU GLY SER THR GLU PRO LEU PRO GLU ALA SEQRES 11 A 479 LEU PHE TRP LEU LEU LEU THR GLY GLU ILE PRO THR ASP SEQRES 12 A 479 ALA GLN VAL LYS ALA LEU SER ALA ASP LEU ALA ALA ARG SEQRES 13 A 479 SER GLU ILE PRO GLU HIS VAL ILE GLN LEU LEU ASP SER SEQRES 14 A 479 LEU PRO LYS ASP LEU HIS PRO MET ALA GLN PHE SER ILE SEQRES 15 A 479 ALA VAL THR ALA LEU GLU SER GLU SER LYS PHE ALA LYS SEQRES 16 A 479 ALA TYR ALA GLN GLY VAL SER LYS LYS GLU TYR TRP SER SEQRES 17 A 479 TYR THR PHE GLU ASP SER LEU ASP LEU LEU GLY LYS LEU SEQRES 18 A 479 PRO VAL ILE ALA SER LYS ILE TYR ARG ASN VAL PHE LYS SEQRES 19 A 479 ASP GLY LYS ILE THR SER THR ASP PRO ASN ALA ASP TYR SEQRES 20 A 479 GLY LYS ASN LEU ALA GLN LEU LEU GLY TYR GLU ASN LYS SEQRES 21 A 479 ASP PHE ILE ASP LEU MET ARG LEU TYR LEU THR ILE HIS SEQRES 22 A 479 SER ASP HIS GLU GLY GLY ASN VAL SER ALA HIS THR THR SEQRES 23 A 479 HIS LEU VAL GLY SER ALA LEU SER SER PRO TYR LEU SER SEQRES 24 A 479 LEU ALA ALA GLY LEU ASN GLY LEU ALA GLY PRO LEU HIS SEQRES 25 A 479 GLY ARG ALA ASN GLN GLU VAL LEU GLU TRP LEU PHE LYS SEQRES 26 A 479 LEU ARG GLU GLU VAL LYS GLY ASP TYR SER LYS GLU THR SEQRES 27 A 479 ILE GLU LYS TYR LEU TRP ASP THR LEU ASN ALA GLY ARG SEQRES 28 A 479 VAL VAL PRO GLY TYR GLY HIS ALA VAL LEU ARG LYS THR SEQRES 29 A 479 ASP PRO ARG TYR THR ALA GLN ARG GLU PHE ALA LEU LYS SEQRES 30 A 479 HIS PHE PRO ASP TYR GLU LEU PHE LYS LEU VAL SER THR SEQRES 31 A 479 ILE TYR GLU VAL ALA PRO GLY VAL LEU THR LYS HIS GLY SEQRES 32 A 479 LYS THR LYS ASN PRO TRP PRO ASN VAL ASP SER HIS SER SEQRES 33 A 479 GLY VAL LEU LEU GLN TYR TYR GLY LEU THR GLU ALA SER SEQRES 34 A 479 PHE TYR THR VAL LEU PHE GLY VAL ALA ARG ALA ILE GLY SEQRES 35 A 479 VAL LEU PRO GLN LEU ILE ILE ASP ARG ALA VAL GLY ALA SEQRES 36 A 479 PRO ILE GLU ARG PRO LYS SER PHE SER THR GLU LYS TYR SEQRES 37 A 479 LYS GLU LEU VAL LYS LYS ILE GLU SER LYS ASN SEQRES 1 B 479 MET SER ALA ILE LEU SER THR THR SER LYS SER PHE LEU SEQRES 2 B 479 SER ARG GLY SER THR ARG GLN CYS GLN ASN MET GLN LYS SEQRES 3 B 479 ALA LEU PHE ALA LEU LEU ASN ALA ARG HIS TYR SER SER SEQRES 4 B 479 ALA SER GLU GLN THR LEU LYS GLU ARG PHE ALA GLU ILE SEQRES 5 B 479 ILE PRO ALA LYS ALA GLU GLU ILE LYS LYS PHE LYS LYS SEQRES 6 B 479 GLU HIS GLY LYS THR VAL ILE GLY GLU VAL LEU LEU GLU SEQRES 7 B 479 GLN ALA TYR GLY GLY MET ARG GLY ILE LYS GLY LEU VAL SEQRES 8 B 479 TRP GLU GLY SER VAL LEU ASP PRO GLU GLU GLY ILE ARG SEQRES 9 B 479 PHE ARG GLY ARG THR ILE PRO GLU ILE GLN ARG GLU LEU SEQRES 10 B 479 PRO LYS ALA GLU GLY SER THR GLU PRO LEU PRO GLU ALA SEQRES 11 B 479 LEU PHE TRP LEU LEU LEU THR GLY GLU ILE PRO THR ASP SEQRES 12 B 479 ALA GLN VAL LYS ALA LEU SER ALA ASP LEU ALA ALA ARG SEQRES 13 B 479 SER GLU ILE PRO GLU HIS VAL ILE GLN LEU LEU ASP SER SEQRES 14 B 479 LEU PRO LYS ASP LEU HIS PRO MET ALA GLN PHE SER ILE SEQRES 15 B 479 ALA VAL THR ALA LEU GLU SER GLU SER LYS PHE ALA LYS SEQRES 16 B 479 ALA TYR ALA GLN GLY VAL SER LYS LYS GLU TYR TRP SER SEQRES 17 B 479 TYR THR PHE GLU ASP SER LEU ASP LEU LEU GLY LYS LEU SEQRES 18 B 479 PRO VAL ILE ALA SER LYS ILE TYR ARG ASN VAL PHE LYS SEQRES 19 B 479 ASP GLY LYS ILE THR SER THR ASP PRO ASN ALA ASP TYR SEQRES 20 B 479 GLY LYS ASN LEU ALA GLN LEU LEU GLY TYR GLU ASN LYS SEQRES 21 B 479 ASP PHE ILE ASP LEU MET ARG LEU TYR LEU THR ILE HIS SEQRES 22 B 479 SER ASP HIS GLU GLY GLY ASN VAL SER ALA HIS THR THR SEQRES 23 B 479 HIS LEU VAL GLY SER ALA LEU SER SER PRO TYR LEU SER SEQRES 24 B 479 LEU ALA ALA GLY LEU ASN GLY LEU ALA GLY PRO LEU HIS SEQRES 25 B 479 GLY ARG ALA ASN GLN GLU VAL LEU GLU TRP LEU PHE LYS SEQRES 26 B 479 LEU ARG GLU GLU VAL LYS GLY ASP TYR SER LYS GLU THR SEQRES 27 B 479 ILE GLU LYS TYR LEU TRP ASP THR LEU ASN ALA GLY ARG SEQRES 28 B 479 VAL VAL PRO GLY TYR GLY HIS ALA VAL LEU ARG LYS THR SEQRES 29 B 479 ASP PRO ARG TYR THR ALA GLN ARG GLU PHE ALA LEU LYS SEQRES 30 B 479 HIS PHE PRO ASP TYR GLU LEU PHE LYS LEU VAL SER THR SEQRES 31 B 479 ILE TYR GLU VAL ALA PRO GLY VAL LEU THR LYS HIS GLY SEQRES 32 B 479 LYS THR LYS ASN PRO TRP PRO ASN VAL ASP SER HIS SER SEQRES 33 B 479 GLY VAL LEU LEU GLN TYR TYR GLY LEU THR GLU ALA SER SEQRES 34 B 479 PHE TYR THR VAL LEU PHE GLY VAL ALA ARG ALA ILE GLY SEQRES 35 B 479 VAL LEU PRO GLN LEU ILE ILE ASP ARG ALA VAL GLY ALA SEQRES 36 B 479 PRO ILE GLU ARG PRO LYS SER PHE SER THR GLU LYS TYR SEQRES 37 B 479 LYS GLU LEU VAL LYS LYS ILE GLU SER LYS ASN HET NA A 501 1 HET CL A 502 2 HET CL A 503 1 HET CL A 504 1 HET ACT A 505 4 HET GOL B 501 6 HET CL B 502 1 HET ACT B 503 4 HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NA NA 1+ FORMUL 4 CL 4(CL 1-) FORMUL 7 ACT 2(C2 H3 O2 1-) FORMUL 8 GOL C3 H8 O3 FORMUL 11 HOH *947(H2 O) HELIX 1 AA1 THR A 44 GLY A 68 1 25 HELIX 2 AA2 LEU A 77 TYR A 81 1 5 HELIX 3 AA3 THR A 109 LEU A 117 1 9 HELIX 4 AA4 LEU A 127 GLY A 138 1 12 HELIX 5 AA5 THR A 142 ARG A 156 1 15 HELIX 6 AA6 PRO A 160 LEU A 170 1 11 HELIX 7 AA7 HIS A 175 LEU A 187 1 13 HELIX 8 AA8 GLU A 188 GLU A 190 5 3 HELIX 9 AA9 SER A 191 GLN A 199 1 9 HELIX 10 AB1 SER A 202 LYS A 204 5 3 HELIX 11 AB2 GLU A 205 LYS A 234 1 30 HELIX 12 AB3 ASP A 246 GLY A 256 1 11 HELIX 13 AB4 ASN A 259 SER A 274 1 16 HELIX 14 AB5 ASN A 280 ALA A 292 1 13 HELIX 15 AB6 SER A 295 ALA A 308 1 14 HELIX 16 AB7 ARG A 314 LYS A 331 1 18 HELIX 17 AB8 SER A 335 ALA A 349 1 15 HELIX 18 AB9 ASP A 365 PHE A 379 1 15 HELIX 19 AC1 TYR A 382 GLY A 403 1 22 HELIX 20 AC2 ASN A 411 SER A 414 5 4 HELIX 21 AC3 HIS A 415 TYR A 423 1 9 HELIX 22 AC4 GLU A 427 SER A 429 5 3 HELIX 23 AC5 PHE A 430 GLY A 454 1 25 HELIX 24 AC6 SER A 464 LYS A 478 1 15 HELIX 25 AC7 THR B 44 GLY B 68 1 25 HELIX 26 AC8 LEU B 77 TYR B 81 1 5 HELIX 27 AC9 THR B 109 LEU B 117 1 9 HELIX 28 AD1 LEU B 127 GLY B 138 1 12 HELIX 29 AD2 THR B 142 ARG B 156 1 15 HELIX 30 AD3 PRO B 160 LEU B 170 1 11 HELIX 31 AD4 HIS B 175 LEU B 187 1 13 HELIX 32 AD5 GLU B 188 GLU B 190 5 3 HELIX 33 AD6 SER B 191 GLN B 199 1 9 HELIX 34 AD7 SER B 202 LYS B 204 5 3 HELIX 35 AD8 GLU B 205 LYS B 234 1 30 HELIX 36 AD9 ASP B 246 GLY B 256 1 11 HELIX 37 AE1 ASN B 259 SER B 274 1 16 HELIX 38 AE2 ASN B 280 ALA B 292 1 13 HELIX 39 AE3 SER B 295 ALA B 308 1 14 HELIX 40 AE4 ARG B 314 VAL B 330 1 17 HELIX 41 AE5 SER B 335 ALA B 349 1 15 HELIX 42 AE6 ASP B 365 PHE B 379 1 15 HELIX 43 AE7 TYR B 382 GLY B 403 1 22 HELIX 44 AE8 VAL B 412 TYR B 423 1 12 HELIX 45 AE9 GLU B 427 SER B 429 5 3 HELIX 46 AF1 PHE B 430 GLY B 454 1 25 HELIX 47 AF2 SER B 464 GLU B 476 1 13 SHEET 1 AA1 2 VAL A 71 LEU A 76 0 SHEET 2 AA1 2 VAL B 71 LEU B 76 -1 O ILE B 72 N VAL A 75 SHEET 1 AA2 2 LYS A 88 VAL A 91 0 SHEET 2 AA2 2 LYS B 461 PHE B 463 1 O LYS B 461 N LEU A 90 SHEET 1 AA3 2 SER A 95 ASP A 98 0 SHEET 2 AA3 2 GLY A 102 PHE A 105 -1 O GLY A 102 N ASP A 98 SHEET 1 AA4 2 LYS A 461 PHE A 463 0 SHEET 2 AA4 2 LYS B 88 VAL B 91 1 O LEU B 90 N LYS A 461 SHEET 1 AA5 2 SER B 95 ASP B 98 0 SHEET 2 AA5 2 GLY B 102 PHE B 105 -1 O GLY B 102 N ASP B 98 LINK OD1 ASP A 173 NA NA A 501 1555 1555 2.90 LINK OD2 ASP A 173 NA NA A 501 1555 1555 2.41 LINK NA NA A 501 O HOH A 641 1555 3645 2.24 LINK NA NA A 501 O HOH A 922 1555 1555 2.22 LINK NA NA A 501 O HOH A 946 1555 1555 2.24 LINK NA NA A 501 O HOH B1007 1555 1555 2.31 CRYST1 62.328 102.398 146.870 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016044 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009766 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006809 0.00000