HEADER TRANSFERASE/LIGASE 01-SEP-22 8GRE TITLE F-BOX PROTEIN IN COMPLEX WITH SKP1(FL) AND SUBSTRATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CITRATE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: F-BOX PROTEIN UCC1; COMPND 7 CHAIN: C; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: E3 UBIQUITIN LIGASE COMPLEX SCF SUBUNIT; COMPND 11 CHAIN: D; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: CIT2, GI527_G0000583; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 10 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 11 ORGANISM_TAXID: 4932; SOURCE 12 STRAIN: W303-1A; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 17 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 18 ORGANISM_TAXID: 4932; SOURCE 19 GENE: SKP1, GI527_G0001262; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS F-BOX PROTEIN, GLYOXYLATE CYCLE, E3 UBIQUITIN LIGASE, LIGASE, KEYWDS 2 TRANSFERASE-LIGASE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.NISHIO,K.NAKATSUKASA,T.KAMURA,T.MIZUSHIMA REVDAT 1 26-APR-23 8GRE 0 JRNL AUTH K.NISHIO,T.KAWARASAKI,Y.SUGIURA,S.MATSUMOTO,A.KONOSHIMA, JRNL AUTH 2 Y.TAKANO,M.HAYASHI,F.OKUMURA,T.KAMURA,T.MIZUSHIMA, JRNL AUTH 3 K.NAKATSUKASA JRNL TITL DEFECTIVE IMPORT OF MITOCHONDRIAL METABOLIC ENZYME ELICITS JRNL TITL 2 ECTOPIC METABOLIC STRESS. JRNL REF SCI ADV V. 9 F1956 2023 JRNL REFN ESSN 2375-2548 JRNL PMID 37058555 JRNL DOI 10.1126/SCIADV.ADF1956 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.71 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 84023 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.370 REMARK 3 FREE R VALUE TEST SET COUNT : 3810 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.7100 - 6.8700 0.93 5455 136 0.1705 0.1726 REMARK 3 2 6.8700 - 5.4600 0.99 5844 142 0.1907 0.2252 REMARK 3 3 5.4600 - 4.7700 0.99 5822 141 0.1705 0.1767 REMARK 3 4 4.7700 - 4.3400 0.99 5797 139 0.1606 0.1685 REMARK 3 5 4.3400 - 4.0300 0.99 5860 139 0.1647 0.1906 REMARK 3 6 4.0300 - 3.7900 0.99 5816 148 0.1790 0.2136 REMARK 3 7 3.7900 - 3.6000 0.99 5800 150 0.1932 0.2364 REMARK 3 8 3.6000 - 3.4400 0.99 5846 136 0.2042 0.2619 REMARK 3 9 3.4400 - 3.3100 0.99 5841 138 0.2143 0.2510 REMARK 3 10 3.3100 - 3.2000 0.99 5798 154 0.2262 0.2455 REMARK 3 11 3.2000 - 3.1000 0.99 5851 127 0.2246 0.2792 REMARK 3 12 3.1000 - 3.0100 0.99 5890 139 0.2327 0.2681 REMARK 3 13 3.0100 - 2.9300 1.00 5807 130 0.2208 0.2577 REMARK 3 14 2.9300 - 2.8600 0.99 5838 168 0.2283 0.2421 REMARK 3 15 2.8600 - 2.7900 0.99 5868 120 0.2335 0.2722 REMARK 3 16 2.7900 - 2.7300 0.99 5844 153 0.2399 0.2699 REMARK 3 17 2.7300 - 2.6800 0.99 5789 149 0.2487 0.2755 REMARK 3 18 2.6800 - 2.6300 0.99 5819 144 0.2404 0.2494 REMARK 3 19 2.6300 - 2.5800 0.99 5811 146 0.2523 0.2512 REMARK 3 20 2.5800 - 2.5400 0.99 5810 146 0.2548 0.2621 REMARK 3 21 2.5400 - 2.5000 0.99 5861 111 0.2578 0.2914 REMARK 3 22 2.5000 - 2.4600 0.99 5873 149 0.2663 0.3434 REMARK 3 23 2.4600 - 2.4200 0.99 5824 139 0.2794 0.3128 REMARK 3 24 2.4200 - 2.3900 0.99 5864 153 0.2828 0.3129 REMARK 3 25 2.3900 - 2.3500 0.99 5781 133 0.2917 0.3214 REMARK 3 26 2.3500 - 2.3200 0.99 5853 128 0.3079 0.3099 REMARK 3 27 2.3200 - 2.3000 0.94 5489 152 0.3134 0.3502 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.252 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.825 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.95 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 10756 REMARK 3 ANGLE : 0.430 14580 REMARK 3 CHIRALITY : 0.038 1591 REMARK 3 PLANARITY : 0.003 1866 REMARK 3 DIHEDRAL : 11.477 3990 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE ENTRY CONTAINS FRIEDEL PAIRS IN REMARK 3 I_PLUS/MINUS COLUMNS REMARK 4 REMARK 4 8GRE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-SEP-22. REMARK 100 THE DEPOSITION ID IS D_1300031949. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.900 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 84031 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 37.710 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.280 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THE ENTRY CONTAINS FRIEDEL PAIRS IN I_PLUS/MINUS COLUMNS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM NA ACETATE, 100 MM NA CITRATE REMARK 280 PH 5.5, 10% (W/V) PEG 4000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.79450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.14300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 75.47100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 80.14300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.79450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 75.47100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 VAL A 3 REMARK 465 PRO A 4 REMARK 465 TYR A 5 REMARK 465 LEU A 6 REMARK 465 ASN A 7 REMARK 465 SER A 8 REMARK 465 ASN A 9 REMARK 465 ARG A 10 REMARK 465 ASN A 11 REMARK 465 VAL A 12 REMARK 465 ALA A 13 REMARK 465 SER A 14 REMARK 465 TYR A 15 REMARK 465 LEU A 16 REMARK 465 GLN A 17 REMARK 465 SER A 18 REMARK 465 ASN A 19 REMARK 465 SER A 20 REMARK 465 SER A 21 REMARK 465 GLN A 22 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 VAL B 3 REMARK 465 PRO B 4 REMARK 465 TYR B 5 REMARK 465 LEU B 6 REMARK 465 ASN B 7 REMARK 465 SER B 8 REMARK 465 ASN B 9 REMARK 465 ARG B 10 REMARK 465 ASN B 11 REMARK 465 VAL B 12 REMARK 465 ALA B 13 REMARK 465 SER B 14 REMARK 465 TYR B 15 REMARK 465 LEU B 16 REMARK 465 GLN B 17 REMARK 465 SER B 18 REMARK 465 ASN B 19 REMARK 465 SER B 20 REMARK 465 SER B 21 REMARK 465 LEU B 460 REMARK 465 MET C 1 REMARK 465 ASN C 2 REMARK 465 GLN C 3 REMARK 465 SER C 4 REMARK 465 ASP C 5 REMARK 465 TYR C 125 REMARK 465 THR C 126 REMARK 465 LYS C 127 REMARK 465 SER C 128 REMARK 465 GLN C 129 REMARK 465 ASP C 130 REMARK 465 LEU C 131 REMARK 465 ASN C 132 REMARK 465 GLY C 133 REMARK 465 SER C 134 REMARK 465 ASP C 135 REMARK 465 SER C 136 REMARK 465 THR C 137 REMARK 465 SER C 138 REMARK 465 ASN C 139 REMARK 465 PHE C 140 REMARK 465 ASN C 141 REMARK 465 SER C 142 REMARK 465 ARG C 143 REMARK 465 PRO C 144 REMARK 465 GLY C 328 REMARK 465 HIS C 329 REMARK 465 GLY C 330 REMARK 465 LEU C 331 REMARK 465 PRO C 332 REMARK 465 TYR C 333 REMARK 465 MET D 1 REMARK 465 VAL D 2 REMARK 465 THR D 3 REMARK 465 SER D 4 REMARK 465 ASN D 5 REMARK 465 VAL D 6 REMARK 465 VAL D 7 REMARK 465 LEU D 8 REMARK 465 VAL D 9 REMARK 465 SER D 10 REMARK 465 GLY D 11 REMARK 465 GLU D 12 REMARK 465 GLY D 13 REMARK 465 GLU D 14 REMARK 465 ARG D 15 REMARK 465 PHE D 16 REMARK 465 THR D 17 REMARK 465 VAL D 18 REMARK 465 ASP D 19 REMARK 465 LYS D 20 REMARK 465 LYS D 21 REMARK 465 ILE D 22 REMARK 465 ALA D 23 REMARK 465 GLU D 24 REMARK 465 ARG D 25 REMARK 465 SER D 26 REMARK 465 LEU D 27 REMARK 465 LEU D 28 REMARK 465 LEU D 29 REMARK 465 LYS D 30 REMARK 465 ASN D 31 REMARK 465 TYR D 32 REMARK 465 LEU D 33 REMARK 465 ASN D 34 REMARK 465 ASP D 35 REMARK 465 MET D 36 REMARK 465 HIS D 37 REMARK 465 ASP D 38 REMARK 465 SER D 39 REMARK 465 ASN D 40 REMARK 465 LEU D 41 REMARK 465 GLN D 42 REMARK 465 ASN D 43 REMARK 465 ASN D 44 REMARK 465 SER D 45 REMARK 465 ASP D 46 REMARK 465 SER D 47 REMARK 465 GLU D 48 REMARK 465 SER D 49 REMARK 465 ASP D 50 REMARK 465 SER D 51 REMARK 465 ASP D 52 REMARK 465 SER D 53 REMARK 465 GLU D 54 REMARK 465 THR D 55 REMARK 465 ASN D 56 REMARK 465 HIS D 57 REMARK 465 LYS D 58 REMARK 465 SER D 59 REMARK 465 LYS D 60 REMARK 465 ASP D 61 REMARK 465 ASN D 62 REMARK 465 ASN D 63 REMARK 465 ASN D 64 REMARK 465 GLY D 65 REMARK 465 ASP D 66 REMARK 465 ASP D 67 REMARK 465 ASP D 68 REMARK 465 ASP D 69 REMARK 465 GLU D 70 REMARK 465 ASP D 71 REMARK 465 ASP D 72 REMARK 465 ASP D 73 REMARK 465 GLU D 74 REMARK 465 ILE D 75 REMARK 465 VAL D 76 REMARK 465 MET D 77 REMARK 465 PRO D 78 REMARK 465 VAL D 79 REMARK 465 PRO D 80 REMARK 465 ASN D 81 REMARK 465 VAL D 82 REMARK 465 ARG D 83 REMARK 465 SER D 84 REMARK 465 HIS D 97 REMARK 465 ARG D 98 REMARK 465 ASP D 99 REMARK 465 SER D 100 REMARK 465 ASN D 101 REMARK 465 PHE D 102 REMARK 465 PRO D 103 REMARK 465 ASP D 104 REMARK 465 GLU D 105 REMARK 465 ASP D 106 REMARK 465 ASP D 107 REMARK 465 ASP D 108 REMARK 465 ASP D 109 REMARK 465 SER D 110 REMARK 465 ARG D 111 REMARK 465 LYS D 112 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 215 -142.43 -123.46 REMARK 500 HIS A 257 72.68 -158.29 REMARK 500 GLU A 258 178.65 62.85 REMARK 500 HIS A 293 -51.12 -132.13 REMARK 500 VAL A 341 -59.22 -124.26 REMARK 500 PHE A 360 71.02 -152.78 REMARK 500 LYS A 459 47.84 -98.43 REMARK 500 LYS B 215 -142.72 -121.79 REMARK 500 HIS B 257 66.78 -162.70 REMARK 500 GLU B 258 179.82 63.66 REMARK 500 HIS B 293 -58.37 -130.52 REMARK 500 VAL B 341 -56.64 -122.00 REMARK 500 PHE B 360 67.00 -151.13 REMARK 500 ILE C 100 -63.72 -129.50 REMARK 500 SER C 103 34.72 -147.47 REMARK 500 MET C 150 143.40 -171.44 REMARK 500 ASN D 171 70.30 59.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8GQZ RELATED DB: PDB DBREF1 8GRE A 1 460 UNP A0A6A5Q445_YEASX DBREF2 8GRE A A0A6A5Q445 1 460 DBREF1 8GRE B 1 460 UNP A0A6A5Q445_YEASX DBREF2 8GRE B A0A6A5Q445 1 460 DBREF 8GRE C 1 369 PDB 8GRE 8GRE 1 369 DBREF1 8GRE D 1 194 UNP A0A6A5Q435_YEASX DBREF2 8GRE D A0A6A5Q435 1 194 SEQRES 1 A 460 MET THR VAL PRO TYR LEU ASN SER ASN ARG ASN VAL ALA SEQRES 2 A 460 SER TYR LEU GLN SER ASN SER SER GLN GLU LYS THR LEU SEQRES 3 A 460 LYS GLU ARG PHE SER GLU ILE TYR PRO ILE HIS ALA GLN SEQRES 4 A 460 ASP VAL ARG GLN PHE VAL LYS GLU HIS GLY LYS THR LYS SEQRES 5 A 460 ILE SER ASP VAL LEU LEU GLU GLN VAL TYR GLY GLY MET SEQRES 6 A 460 ARG GLY ILE PRO GLY SER VAL TRP GLU GLY SER VAL LEU SEQRES 7 A 460 ASP PRO GLU ASP GLY ILE ARG PHE ARG GLY ARG THR ILE SEQRES 8 A 460 ALA ASP ILE GLN LYS ASP LEU PRO LYS ALA LYS GLY SER SEQRES 9 A 460 SER GLN PRO LEU PRO GLU ALA LEU PHE TRP LEU LEU LEU SEQRES 10 A 460 THR GLY GLU VAL PRO THR GLN ALA GLN VAL GLU ASN LEU SEQRES 11 A 460 SER ALA ASP LEU MET SER ARG SER GLU LEU PRO SER HIS SEQRES 12 A 460 VAL VAL GLN LEU LEU ASP ASN LEU PRO LYS ASP LEU HIS SEQRES 13 A 460 PRO MET ALA GLN PHE SER ILE ALA VAL THR ALA LEU GLU SEQRES 14 A 460 SER GLU SER LYS PHE ALA LYS ALA TYR ALA GLN GLY ILE SEQRES 15 A 460 SER LYS GLN ASP TYR TRP SER TYR THR PHE GLU ASP SER SEQRES 16 A 460 LEU ASP LEU LEU GLY LYS LEU PRO VAL ILE ALA ALA LYS SEQRES 17 A 460 ILE TYR ARG ASN VAL PHE LYS ASP GLY LYS MET GLY GLU SEQRES 18 A 460 VAL ASP PRO ASN ALA ASP TYR ALA LYS ASN LEU VAL ASN SEQRES 19 A 460 LEU ILE GLY SER LYS ASP GLU ASP PHE VAL ASP LEU MET SEQRES 20 A 460 ARG LEU TYR LEU THR ILE HIS SER ASP HIS GLU GLY GLY SEQRES 21 A 460 ASN VAL SER ALA HIS THR SER HIS LEU VAL GLY SER ALA SEQRES 22 A 460 LEU SER SER PRO TYR LEU SER LEU ALA SER GLY LEU ASN SEQRES 23 A 460 GLY LEU ALA GLY PRO LEU HIS GLY ARG ALA ASN GLN GLU SEQRES 24 A 460 VAL LEU GLU TRP LEU PHE ALA LEU LYS GLU GLU VAL ASN SEQRES 25 A 460 ASP ASP TYR SER LYS ASP THR ILE GLU LYS TYR LEU TRP SEQRES 26 A 460 ASP THR LEU ASN SER GLY ARG VAL ILE PRO GLY TYR GLY SEQRES 27 A 460 HIS ALA VAL LEU ARG LYS THR ASP PRO ARG TYR MET ALA SEQRES 28 A 460 GLN ARG LYS PHE ALA MET ASP HIS PHE PRO ASP TYR GLU SEQRES 29 A 460 LEU PHE LYS LEU VAL SER SER ILE TYR GLU VAL ALA PRO SEQRES 30 A 460 GLY VAL LEU THR GLU HIS GLY LYS THR LYS ASN PRO TRP SEQRES 31 A 460 PRO ASN VAL ASP ALA HIS SER GLY VAL LEU LEU GLN TYR SEQRES 32 A 460 TYR GLY LEU LYS GLU SER SER PHE TYR THR VAL LEU PHE SEQRES 33 A 460 GLY VAL SER ARG ALA PHE GLY ILE LEU ALA GLN LEU ILE SEQRES 34 A 460 THR ASP ARG ALA ILE GLY ALA SER ILE GLU ARG PRO LYS SEQRES 35 A 460 SER TYR SER THR GLU LYS TYR LYS GLU LEU VAL LYS ASN SEQRES 36 A 460 ILE GLU SER LYS LEU SEQRES 1 B 460 MET THR VAL PRO TYR LEU ASN SER ASN ARG ASN VAL ALA SEQRES 2 B 460 SER TYR LEU GLN SER ASN SER SER GLN GLU LYS THR LEU SEQRES 3 B 460 LYS GLU ARG PHE SER GLU ILE TYR PRO ILE HIS ALA GLN SEQRES 4 B 460 ASP VAL ARG GLN PHE VAL LYS GLU HIS GLY LYS THR LYS SEQRES 5 B 460 ILE SER ASP VAL LEU LEU GLU GLN VAL TYR GLY GLY MET SEQRES 6 B 460 ARG GLY ILE PRO GLY SER VAL TRP GLU GLY SER VAL LEU SEQRES 7 B 460 ASP PRO GLU ASP GLY ILE ARG PHE ARG GLY ARG THR ILE SEQRES 8 B 460 ALA ASP ILE GLN LYS ASP LEU PRO LYS ALA LYS GLY SER SEQRES 9 B 460 SER GLN PRO LEU PRO GLU ALA LEU PHE TRP LEU LEU LEU SEQRES 10 B 460 THR GLY GLU VAL PRO THR GLN ALA GLN VAL GLU ASN LEU SEQRES 11 B 460 SER ALA ASP LEU MET SER ARG SER GLU LEU PRO SER HIS SEQRES 12 B 460 VAL VAL GLN LEU LEU ASP ASN LEU PRO LYS ASP LEU HIS SEQRES 13 B 460 PRO MET ALA GLN PHE SER ILE ALA VAL THR ALA LEU GLU SEQRES 14 B 460 SER GLU SER LYS PHE ALA LYS ALA TYR ALA GLN GLY ILE SEQRES 15 B 460 SER LYS GLN ASP TYR TRP SER TYR THR PHE GLU ASP SER SEQRES 16 B 460 LEU ASP LEU LEU GLY LYS LEU PRO VAL ILE ALA ALA LYS SEQRES 17 B 460 ILE TYR ARG ASN VAL PHE LYS ASP GLY LYS MET GLY GLU SEQRES 18 B 460 VAL ASP PRO ASN ALA ASP TYR ALA LYS ASN LEU VAL ASN SEQRES 19 B 460 LEU ILE GLY SER LYS ASP GLU ASP PHE VAL ASP LEU MET SEQRES 20 B 460 ARG LEU TYR LEU THR ILE HIS SER ASP HIS GLU GLY GLY SEQRES 21 B 460 ASN VAL SER ALA HIS THR SER HIS LEU VAL GLY SER ALA SEQRES 22 B 460 LEU SER SER PRO TYR LEU SER LEU ALA SER GLY LEU ASN SEQRES 23 B 460 GLY LEU ALA GLY PRO LEU HIS GLY ARG ALA ASN GLN GLU SEQRES 24 B 460 VAL LEU GLU TRP LEU PHE ALA LEU LYS GLU GLU VAL ASN SEQRES 25 B 460 ASP ASP TYR SER LYS ASP THR ILE GLU LYS TYR LEU TRP SEQRES 26 B 460 ASP THR LEU ASN SER GLY ARG VAL ILE PRO GLY TYR GLY SEQRES 27 B 460 HIS ALA VAL LEU ARG LYS THR ASP PRO ARG TYR MET ALA SEQRES 28 B 460 GLN ARG LYS PHE ALA MET ASP HIS PHE PRO ASP TYR GLU SEQRES 29 B 460 LEU PHE LYS LEU VAL SER SER ILE TYR GLU VAL ALA PRO SEQRES 30 B 460 GLY VAL LEU THR GLU HIS GLY LYS THR LYS ASN PRO TRP SEQRES 31 B 460 PRO ASN VAL ASP ALA HIS SER GLY VAL LEU LEU GLN TYR SEQRES 32 B 460 TYR GLY LEU LYS GLU SER SER PHE TYR THR VAL LEU PHE SEQRES 33 B 460 GLY VAL SER ARG ALA PHE GLY ILE LEU ALA GLN LEU ILE SEQRES 34 B 460 THR ASP ARG ALA ILE GLY ALA SER ILE GLU ARG PRO LYS SEQRES 35 B 460 SER TYR SER THR GLU LYS TYR LYS GLU LEU VAL LYS ASN SEQRES 36 B 460 ILE GLU SER LYS LEU SEQRES 1 C 369 MET ASN GLN SER ASP SER SER LEU MET ASP LEU PRO LEU SEQRES 2 C 369 GLU ILE HIS LEU SER LEU LEU GLU TYR VAL PRO ASN GLU SEQRES 3 C 369 LEU ARG ALA VAL ASN LYS TYR PHE TYR VAL LEU HIS ASN SEQRES 4 C 369 HIS SER TYR LYS GLU LYS SER LEU ALA TRP ILE ALA GLU SEQRES 5 C 369 ASP ASN TYR ILE TRP ALA VAL VAL LYS HIS SER LEU CYS SEQRES 6 C 369 LEU TYR VAL LYS SER LEU ASP PRO LEU ARG GLN HIS ALA SEQRES 7 C 369 ARG GLU ILE ILE GLN GLU THR LYS GLU PRO GLY PHE ASN SEQRES 8 C 369 VAL PRO LEU CYS MET THR LYS TYR ILE ALA ASP SER TRP SEQRES 9 C 369 TYR ILE VAL TYR ASN ALA LEU GLN TYR PRO GLY LYS ILE SEQRES 10 C 369 ILE ASN MET GLY TRP ASP LYS TYR THR LYS SER GLN ASP SEQRES 11 C 369 LEU ASN GLY SER ASP SER THR SER ASN PHE ASN SER ARG SEQRES 12 C 369 PRO LYS GLU ARG THR LEU MET GLN SER LEU THR ALA LEU SEQRES 13 C 369 PRO VAL ASN PHE TRP SER ARG LYS LYS ASP GLU PRO THR SEQRES 14 C 369 PRO VAL ASN VAL TRP PHE TYR VAL LYS ASN ALA HIS VAL SEQRES 15 C 369 ALA ARG TYR ILE PRO LYS ILE ILE THR GLU ILE GLY ILE SEQRES 16 C 369 CYS ASN TYR GLY PRO LYS GLN ILE VAL ALA SER ALA GLY SEQRES 17 C 369 TYR ILE ASN GLU LEU ILE THR SER GLU GLY ILE TYR CYS SEQRES 18 C 369 VAL ASN LEU GLY HIS LEU PRO ARG LEU TYR ASP GLU GLN SEQRES 19 C 369 ILE PHE GLU GLY THR GLY THR THR HIS LEU PRO LEU GLU SEQRES 20 C 369 LEU LYS ALA ILE ASP ARG THR ASP SER ASP VAL CYS ILE SEQRES 21 C 369 ASN SER ASP LEU VAL LEU LEU GLY TYR ASP PHE ILE PRO SEQRES 22 C 369 TYR GLN ILE SER LYS PRO TRP LEU LEU PHE ARG ILE GLU SEQRES 23 C 369 PRO VAL ASN SER ILE GLU ALA ILE PHE ASN TYR SER GLU SEQRES 24 C 369 CYS SER PHE SER TYR GLN PHE ALA TRP SER LEU ALA CYS SEQRES 25 C 369 LEU GLN SER GLU GLU LYS ILE SER PHE PRO ARG ASP THR SEQRES 26 C 369 ILE ILE GLY HIS GLY LEU PRO TYR LYS PRO SER LYS LEU SEQRES 27 C 369 ILE ARG ILE PHE VAL TYR LYS HIS PRO GLU GLN LYS GLN SEQRES 28 C 369 ASP LEU GLY GLN GLU ILE ALA LEU PRO ASN TRP ASN THR SEQRES 29 C 369 PRO TYR LEU ARG ARG SEQRES 1 D 194 MET VAL THR SER ASN VAL VAL LEU VAL SER GLY GLU GLY SEQRES 2 D 194 GLU ARG PHE THR VAL ASP LYS LYS ILE ALA GLU ARG SER SEQRES 3 D 194 LEU LEU LEU LYS ASN TYR LEU ASN ASP MET HIS ASP SER SEQRES 4 D 194 ASN LEU GLN ASN ASN SER ASP SER GLU SER ASP SER ASP SEQRES 5 D 194 SER GLU THR ASN HIS LYS SER LYS ASP ASN ASN ASN GLY SEQRES 6 D 194 ASP ASP ASP ASP GLU ASP ASP ASP GLU ILE VAL MET PRO SEQRES 7 D 194 VAL PRO ASN VAL ARG SER SER VAL LEU GLN LYS VAL ILE SEQRES 8 D 194 GLU TRP ALA GLU HIS HIS ARG ASP SER ASN PHE PRO ASP SEQRES 9 D 194 GLU ASP ASP ASP ASP SER ARG LYS SER ALA PRO VAL ASP SEQRES 10 D 194 SER TRP ASP ARG GLU PHE LEU LYS VAL ASP GLN GLU MET SEQRES 11 D 194 LEU TYR GLU ILE ILE LEU ALA ALA ASN TYR LEU ASN ILE SEQRES 12 D 194 LYS PRO LEU LEU ASP ALA GLY CYS LYS VAL VAL ALA GLU SEQRES 13 D 194 MET ILE ARG GLY ARG SER PRO GLU GLU ILE ARG ARG THR SEQRES 14 D 194 PHE ASN ILE VAL ASN ASP PHE THR PRO GLU GLU GLU ALA SEQRES 15 D 194 ALA ILE ARG ARG GLU ASN GLU TRP ALA GLU ASP ARG HET GOL A 501 6 HET GOL A 502 6 HET GOL C 401 6 HET GOL C 402 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 GOL 4(C3 H8 O3) FORMUL 9 HOH *244(H2 O) HELIX 1 AA1 THR A 25 GLY A 49 1 25 HELIX 2 AA2 LEU A 58 TYR A 62 1 5 HELIX 3 AA3 THR A 90 LEU A 98 1 9 HELIX 4 AA4 LEU A 108 GLY A 119 1 12 HELIX 5 AA5 THR A 123 ARG A 137 1 15 HELIX 6 AA6 PRO A 141 LEU A 151 1 11 HELIX 7 AA7 HIS A 156 LEU A 168 1 13 HELIX 8 AA8 GLU A 169 GLU A 171 5 3 HELIX 9 AA9 SER A 172 GLY A 181 1 10 HELIX 10 AB1 SER A 183 GLN A 185 5 3 HELIX 11 AB2 ASP A 186 LYS A 215 1 30 HELIX 12 AB3 ASP A 227 GLY A 237 1 11 HELIX 13 AB4 ASP A 240 HIS A 254 1 15 HELIX 14 AB5 ASN A 261 ALA A 273 1 13 HELIX 15 AB6 SER A 276 ALA A 289 1 14 HELIX 16 AB7 ARG A 295 ASN A 312 1 18 HELIX 17 AB8 SER A 316 SER A 330 1 15 HELIX 18 AB9 ASP A 346 PHE A 360 1 15 HELIX 19 AC1 TYR A 363 GLY A 384 1 22 HELIX 20 AC2 VAL A 393 TYR A 404 1 12 HELIX 21 AC3 GLU A 408 SER A 410 5 3 HELIX 22 AC4 PHE A 411 ILE A 434 1 24 HELIX 23 AC5 SER A 445 LYS A 459 1 15 HELIX 24 AC6 THR B 25 GLY B 49 1 25 HELIX 25 AC7 LEU B 58 TYR B 62 1 5 HELIX 26 AC8 THR B 90 LEU B 98 1 9 HELIX 27 AC9 LEU B 108 GLY B 119 1 12 HELIX 28 AD1 THR B 123 ARG B 137 1 15 HELIX 29 AD2 PRO B 141 LEU B 151 1 11 HELIX 30 AD3 HIS B 156 LEU B 168 1 13 HELIX 31 AD4 GLU B 169 GLU B 171 5 3 HELIX 32 AD5 SER B 172 GLN B 180 1 9 HELIX 33 AD6 SER B 183 GLN B 185 5 3 HELIX 34 AD7 ASP B 186 LYS B 215 1 30 HELIX 35 AD8 ASP B 227 GLY B 237 1 11 HELIX 36 AD9 ASP B 240 HIS B 254 1 15 HELIX 37 AE1 ASN B 261 ALA B 273 1 13 HELIX 38 AE2 SER B 276 ALA B 289 1 14 HELIX 39 AE3 ARG B 295 ASN B 312 1 18 HELIX 40 AE4 SER B 316 SER B 330 1 15 HELIX 41 AE5 ASP B 346 PHE B 360 1 15 HELIX 42 AE6 TYR B 363 GLY B 384 1 22 HELIX 43 AE7 VAL B 393 ALA B 395 5 3 HELIX 44 AE8 HIS B 396 TYR B 404 1 9 HELIX 45 AE9 GLU B 408 SER B 410 5 3 HELIX 46 AF1 PHE B 411 ILE B 434 1 24 HELIX 47 AF2 SER B 445 LYS B 459 1 15 HELIX 48 AF3 SER C 7 LEU C 11 5 5 HELIX 49 AF4 PRO C 12 VAL C 23 1 12 HELIX 50 AF5 VAL C 23 ARG C 28 1 6 HELIX 51 AF6 ASN C 31 ILE C 50 1 20 HELIX 52 AF7 ASN C 54 SER C 70 1 17 HELIX 53 AF8 LEU C 71 GLU C 80 1 10 HELIX 54 AF9 PRO C 93 THR C 97 5 5 HELIX 55 AG1 SER C 103 TYR C 113 1 11 HELIX 56 AG2 HIS C 181 PRO C 187 5 7 HELIX 57 AG3 TYR C 209 ILE C 214 5 6 HELIX 58 AG4 ASP C 232 GLU C 237 5 6 HELIX 59 AG5 SER C 290 ILE C 294 5 5 HELIX 60 AG6 ASN C 296 SER C 315 1 20 HELIX 61 AG7 ASP C 352 LEU C 359 1 8 HELIX 62 AG8 VAL D 86 HIS D 96 1 11 HELIX 63 AG9 ASP D 117 LEU D 124 1 8 HELIX 64 AH1 ASP D 127 LEU D 141 1 15 HELIX 65 AH2 ILE D 143 ARG D 159 1 17 HELIX 66 AH3 SER D 162 ASN D 171 1 10 HELIX 67 AH4 THR D 177 ALA D 191 1 15 SHEET 1 AA1 2 LYS A 52 LEU A 57 0 SHEET 2 AA1 2 LYS B 52 LEU B 57 -1 O ILE B 53 N VAL A 56 SHEET 1 AA2 2 PRO A 69 VAL A 72 0 SHEET 2 AA2 2 LYS B 442 TYR B 444 1 O LYS B 442 N GLY A 70 SHEET 1 AA3 2 SER A 76 ASP A 79 0 SHEET 2 AA3 2 GLY A 83 PHE A 86 -1 O GLY A 83 N ASP A 79 SHEET 1 AA4 2 TYR A 337 HIS A 339 0 SHEET 2 AA4 2 ASN A 388 PRO A 391 -1 O TRP A 390 N GLY A 338 SHEET 1 AA5 2 LYS A 442 TYR A 444 0 SHEET 2 AA5 2 PRO B 69 VAL B 72 1 O GLY B 70 N LYS A 442 SHEET 1 AA6 2 SER B 76 ASP B 79 0 SHEET 2 AA6 2 GLY B 83 PHE B 86 -1 O GLY B 83 N ASP B 79 SHEET 1 AA7 2 TYR B 337 HIS B 339 0 SHEET 2 AA7 2 ASN B 388 PRO B 391 -1 O TRP B 390 N GLY B 338 SHEET 1 AA8 6 ILE C 117 ILE C 118 0 SHEET 2 AA8 6 LEU C 264 ASP C 270 -1 O TYR C 269 N ILE C 117 SHEET 3 AA8 6 PRO C 170 VAL C 177 -1 N TRP C 174 O GLY C 268 SHEET 4 AA8 6 GLY C 218 HIS C 226 -1 O LEU C 224 N VAL C 171 SHEET 5 AA8 6 TRP C 280 ILE C 285 -1 O ILE C 285 N ILE C 219 SHEET 6 AA8 6 ILE C 341 TYR C 344 -1 O VAL C 343 N LEU C 282 SHEET 1 AA9 4 ARG C 147 PRO C 157 0 SHEET 2 AA9 4 HIS C 243 ASP C 252 -1 O ASP C 252 N ARG C 147 SHEET 3 AA9 4 ILE C 189 ILE C 195 -1 N GLY C 194 O GLU C 247 SHEET 4 AA9 4 GLN C 202 VAL C 204 -1 O GLN C 202 N ILE C 193 CRYST1 77.589 150.942 160.286 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012888 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006625 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006239 0.00000