data_8GS9 # _entry.id 8GS9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8GS9 pdb_00008gs9 10.2210/pdb8gs9/pdb WWPDB D_1300032029 ? ? EMDB EMD-34226 ? ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'SARS-CoV-2 BA.2 spike RBD in complex bound with VacBB-551' _pdbx_database_related.db_id EMD-34226 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8GS9 _pdbx_database_status.recvd_initial_deposition_date 2022-09-05 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Liu, C.C.' 1 0000-0002-8675-9100 'Ju, B.' 2 0000-0003-0768-6327 'Shen, S.L.' 3 0000-0003-2005-2687 'Zhang, Z.' 4 0000-0002-3544-1389 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Cell Rep' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2211-1247 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 42 _citation.language ? _citation.page_first 112532 _citation.page_last 112532 _citation.title 'Omicron BQ.1.1 and XBB.1 unprecedentedly escape broadly neutralizing antibodies elicited by prototype vaccination.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.celrep.2023.112532 _citation.pdbx_database_id_PubMed 37219999 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ju, B.' 1 ? primary 'Fan, Q.' 2 ? primary 'Liu, C.' 3 ? primary 'Shen, S.' 4 ? primary 'Wang, M.' 5 ? primary 'Guo, H.' 6 ? primary 'Zhou, B.' 7 ? primary 'Ge, X.' 8 ? primary 'Zhang, Z.' 9 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8GS9 _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8GS9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Spike glycoprotein' 20660.240 1 ? ? ? ? 2 polymer man 'Heavy chain of VacBB-551' 12534.110 1 ? ? ? ? 3 polymer man 'Light chain of VacBB-551' 10993.049 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'S glycoprotein,E2,Peplomer protein' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;PFDEVFNATRFASVYAWNRKRISNCVADYSVLYNFAPFFAFKCYGVSPTKLNDLCFTNVYADSFVIRGNEVSQIAPGQTG NIADYNYKLPDDFTGCVIAWNSNKLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGNKPCNGVAGFNCYFPLRSYG FRPTYGVGHQPYRVVVLSFEL ; ;PFDEVFNATRFASVYAWNRKRISNCVADYSVLYNFAPFFAFKCYGVSPTKLNDLCFTNVYADSFVIRGNEVSQIAPGQTG NIADYNYKLPDDFTGCVIAWNSNKLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGNKPCNGVAGFNCYFPLRSYG FRPTYGVGHQPYRVVVLSFEL ; A ? 2 'polypeptide(L)' no no ;VQLVESGGGLIQPGGSLRLSCAASEIIVSRNYMNWVRQAPGKGLEWVSVIYAGGSTFYADSVKDRFTISRDNSKNTLYLQ MNRLRAEDTAVYYCARSLGDRFDFWGQGTLVTV ; ;VQLVESGGGLIQPGGSLRLSCAASEIIVSRNYMNWVRQAPGKGLEWVSVIYAGGSTFYADSVKDRFTISRDNSKNTLYLQ MNRLRAEDTAVYYCARSLGDRFDFWGQGTLVTV ; H ? 3 'polypeptide(L)' no no ;DIQLTQSPSSLSASVGDRVTITCRASQGIPSYLAWYQQNPGRAPKLLIYAASTLQNGVPSRFSGSGSGTDFTLTISSLQS EDFATYYCQHEDTFGQGTKLEI ; ;DIQLTQSPSSLSASVGDRVTITCRASQGIPSYLAWYQQNPGRAPKLLIYAASTLQNGVPSRFSGSGSGTDFTLTISSLQS EDFATYYCQHEDTFGQGTKLEI ; K ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 PHE n 1 3 ASP n 1 4 GLU n 1 5 VAL n 1 6 PHE n 1 7 ASN n 1 8 ALA n 1 9 THR n 1 10 ARG n 1 11 PHE n 1 12 ALA n 1 13 SER n 1 14 VAL n 1 15 TYR n 1 16 ALA n 1 17 TRP n 1 18 ASN n 1 19 ARG n 1 20 LYS n 1 21 ARG n 1 22 ILE n 1 23 SER n 1 24 ASN n 1 25 CYS n 1 26 VAL n 1 27 ALA n 1 28 ASP n 1 29 TYR n 1 30 SER n 1 31 VAL n 1 32 LEU n 1 33 TYR n 1 34 ASN n 1 35 PHE n 1 36 ALA n 1 37 PRO n 1 38 PHE n 1 39 PHE n 1 40 ALA n 1 41 PHE n 1 42 LYS n 1 43 CYS n 1 44 TYR n 1 45 GLY n 1 46 VAL n 1 47 SER n 1 48 PRO n 1 49 THR n 1 50 LYS n 1 51 LEU n 1 52 ASN n 1 53 ASP n 1 54 LEU n 1 55 CYS n 1 56 PHE n 1 57 THR n 1 58 ASN n 1 59 VAL n 1 60 TYR n 1 61 ALA n 1 62 ASP n 1 63 SER n 1 64 PHE n 1 65 VAL n 1 66 ILE n 1 67 ARG n 1 68 GLY n 1 69 ASN n 1 70 GLU n 1 71 VAL n 1 72 SER n 1 73 GLN n 1 74 ILE n 1 75 ALA n 1 76 PRO n 1 77 GLY n 1 78 GLN n 1 79 THR n 1 80 GLY n 1 81 ASN n 1 82 ILE n 1 83 ALA n 1 84 ASP n 1 85 TYR n 1 86 ASN n 1 87 TYR n 1 88 LYS n 1 89 LEU n 1 90 PRO n 1 91 ASP n 1 92 ASP n 1 93 PHE n 1 94 THR n 1 95 GLY n 1 96 CYS n 1 97 VAL n 1 98 ILE n 1 99 ALA n 1 100 TRP n 1 101 ASN n 1 102 SER n 1 103 ASN n 1 104 LYS n 1 105 LEU n 1 106 ASP n 1 107 SER n 1 108 LYS n 1 109 VAL n 1 110 GLY n 1 111 GLY n 1 112 ASN n 1 113 TYR n 1 114 ASN n 1 115 TYR n 1 116 LEU n 1 117 TYR n 1 118 ARG n 1 119 LEU n 1 120 PHE n 1 121 ARG n 1 122 LYS n 1 123 SER n 1 124 ASN n 1 125 LEU n 1 126 LYS n 1 127 PRO n 1 128 PHE n 1 129 GLU n 1 130 ARG n 1 131 ASP n 1 132 ILE n 1 133 SER n 1 134 THR n 1 135 GLU n 1 136 ILE n 1 137 TYR n 1 138 GLN n 1 139 ALA n 1 140 GLY n 1 141 ASN n 1 142 LYS n 1 143 PRO n 1 144 CYS n 1 145 ASN n 1 146 GLY n 1 147 VAL n 1 148 ALA n 1 149 GLY n 1 150 PHE n 1 151 ASN n 1 152 CYS n 1 153 TYR n 1 154 PHE n 1 155 PRO n 1 156 LEU n 1 157 ARG n 1 158 SER n 1 159 TYR n 1 160 GLY n 1 161 PHE n 1 162 ARG n 1 163 PRO n 1 164 THR n 1 165 TYR n 1 166 GLY n 1 167 VAL n 1 168 GLY n 1 169 HIS n 1 170 GLN n 1 171 PRO n 1 172 TYR n 1 173 ARG n 1 174 VAL n 1 175 VAL n 1 176 VAL n 1 177 LEU n 1 178 SER n 1 179 PHE n 1 180 GLU n 1 181 LEU n 2 1 VAL n 2 2 GLN n 2 3 LEU n 2 4 VAL n 2 5 GLU n 2 6 SER n 2 7 GLY n 2 8 GLY n 2 9 GLY n 2 10 LEU n 2 11 ILE n 2 12 GLN n 2 13 PRO n 2 14 GLY n 2 15 GLY n 2 16 SER n 2 17 LEU n 2 18 ARG n 2 19 LEU n 2 20 SER n 2 21 CYS n 2 22 ALA n 2 23 ALA n 2 24 SER n 2 25 GLU n 2 26 ILE n 2 27 ILE n 2 28 VAL n 2 29 SER n 2 30 ARG n 2 31 ASN n 2 32 TYR n 2 33 MET n 2 34 ASN n 2 35 TRP n 2 36 VAL n 2 37 ARG n 2 38 GLN n 2 39 ALA n 2 40 PRO n 2 41 GLY n 2 42 LYS n 2 43 GLY n 2 44 LEU n 2 45 GLU n 2 46 TRP n 2 47 VAL n 2 48 SER n 2 49 VAL n 2 50 ILE n 2 51 TYR n 2 52 ALA n 2 53 GLY n 2 54 GLY n 2 55 SER n 2 56 THR n 2 57 PHE n 2 58 TYR n 2 59 ALA n 2 60 ASP n 2 61 SER n 2 62 VAL n 2 63 LYS n 2 64 ASP n 2 65 ARG n 2 66 PHE n 2 67 THR n 2 68 ILE n 2 69 SER n 2 70 ARG n 2 71 ASP n 2 72 ASN n 2 73 SER n 2 74 LYS n 2 75 ASN n 2 76 THR n 2 77 LEU n 2 78 TYR n 2 79 LEU n 2 80 GLN n 2 81 MET n 2 82 ASN n 2 83 ARG n 2 84 LEU n 2 85 ARG n 2 86 ALA n 2 87 GLU n 2 88 ASP n 2 89 THR n 2 90 ALA n 2 91 VAL n 2 92 TYR n 2 93 TYR n 2 94 CYS n 2 95 ALA n 2 96 ARG n 2 97 SER n 2 98 LEU n 2 99 GLY n 2 100 ASP n 2 101 ARG n 2 102 PHE n 2 103 ASP n 2 104 PHE n 2 105 TRP n 2 106 GLY n 2 107 GLN n 2 108 GLY n 2 109 THR n 2 110 LEU n 2 111 VAL n 2 112 THR n 2 113 VAL n 3 1 ASP n 3 2 ILE n 3 3 GLN n 3 4 LEU n 3 5 THR n 3 6 GLN n 3 7 SER n 3 8 PRO n 3 9 SER n 3 10 SER n 3 11 LEU n 3 12 SER n 3 13 ALA n 3 14 SER n 3 15 VAL n 3 16 GLY n 3 17 ASP n 3 18 ARG n 3 19 VAL n 3 20 THR n 3 21 ILE n 3 22 THR n 3 23 CYS n 3 24 ARG n 3 25 ALA n 3 26 SER n 3 27 GLN n 3 28 GLY n 3 29 ILE n 3 30 PRO n 3 31 SER n 3 32 TYR n 3 33 LEU n 3 34 ALA n 3 35 TRP n 3 36 TYR n 3 37 GLN n 3 38 GLN n 3 39 ASN n 3 40 PRO n 3 41 GLY n 3 42 ARG n 3 43 ALA n 3 44 PRO n 3 45 LYS n 3 46 LEU n 3 47 LEU n 3 48 ILE n 3 49 TYR n 3 50 ALA n 3 51 ALA n 3 52 SER n 3 53 THR n 3 54 LEU n 3 55 GLN n 3 56 ASN n 3 57 GLY n 3 58 VAL n 3 59 PRO n 3 60 SER n 3 61 ARG n 3 62 PHE n 3 63 SER n 3 64 GLY n 3 65 SER n 3 66 GLY n 3 67 SER n 3 68 GLY n 3 69 THR n 3 70 ASP n 3 71 PHE n 3 72 THR n 3 73 LEU n 3 74 THR n 3 75 ILE n 3 76 SER n 3 77 SER n 3 78 LEU n 3 79 GLN n 3 80 SER n 3 81 GLU n 3 82 ASP n 3 83 PHE n 3 84 ALA n 3 85 THR n 3 86 TYR n 3 87 TYR n 3 88 CYS n 3 89 GLN n 3 90 HIS n 3 91 GLU n 3 92 ASP n 3 93 THR n 3 94 PHE n 3 95 GLY n 3 96 GLN n 3 97 GLY n 3 98 THR n 3 99 LYS n 3 100 LEU n 3 101 GLU n 3 102 ILE n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 181 ? ? 'S, 2' ? ? ? ? ? ? 'Severe acute respiratory syndrome coronavirus 2' 2697049 ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? HEK293 ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 113 ? ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? HEK293 ? ? ? ? ? ? ? ? ? ? ? ? 3 1 sample 'Biological sequence' 1 102 ? ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? HEK293 ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP SPIKE_SARS2 P0DTC2 ? 1 ;PFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTG KIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYG FQPTNGVGYQPYRVVVLSFEL ; 337 2 PDB 8GS9 8GS9 ? 2 ? 1 3 PDB 8GS9 8GS9 ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8GS9 A 1 ? 181 ? P0DTC2 337 ? 517 ? 337 517 2 2 8GS9 H 1 ? 113 ? 8GS9 2 ? 114 ? 2 114 3 3 8GS9 K 1 ? 102 ? 8GS9 1 ? 102 ? 1 102 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 8GS9 ASP A 3 ? UNP P0DTC2 GLY 339 variant 339 1 1 8GS9 PHE A 35 ? UNP P0DTC2 SER 371 variant 371 2 1 8GS9 PRO A 37 ? UNP P0DTC2 SER 373 variant 373 3 1 8GS9 PHE A 39 ? UNP P0DTC2 SER 375 variant 375 4 1 8GS9 ALA A 40 ? UNP P0DTC2 THR 376 variant 376 5 1 8GS9 ASN A 69 ? UNP P0DTC2 ASP 405 variant 405 6 1 8GS9 SER A 72 ? UNP P0DTC2 ARG 408 variant 408 7 1 8GS9 ASN A 81 ? UNP P0DTC2 LYS 417 variant 417 8 1 8GS9 LYS A 104 ? UNP P0DTC2 ASN 440 variant 440 9 1 8GS9 ASN A 141 ? UNP P0DTC2 SER 477 variant 477 10 1 8GS9 LYS A 142 ? UNP P0DTC2 THR 478 variant 478 11 1 8GS9 ALA A 148 ? UNP P0DTC2 GLU 484 variant 484 12 1 8GS9 ARG A 157 ? UNP P0DTC2 GLN 493 variant 493 13 1 8GS9 ARG A 162 ? UNP P0DTC2 GLN 498 variant 498 14 1 8GS9 TYR A 165 ? UNP P0DTC2 ASN 501 variant 501 15 1 8GS9 HIS A 169 ? UNP P0DTC2 TYR 505 variant 505 16 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8GS9 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 8GS9 _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.003 ? 3205 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.478 ? 4349 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 4.663 ? 444 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.043 ? 462 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.003 ? 566 ? f_plane_restr ? ? # _struct.entry_id 8GS9 _struct.title 'SARS-CoV-2 BA.2 spike RBD in complex bound with VacBB-551' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8GS9 _struct_keywords.text 'Antibody, VIRAL PROTEIN-IMMUNE SYSTEM COMPLEX' _struct_keywords.pdbx_keywords 'VIRAL PROTEIN/IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 PHE A 2 ? ASN A 7 ? PHE A 338 ASN A 343 1 ? 6 HELX_P HELX_P2 AA2 SER A 13 ? TRP A 17 ? SER A 349 TRP A 353 5 ? 5 HELX_P HELX_P3 AA3 TYR A 29 ? PHE A 35 ? TYR A 365 PHE A 371 1 ? 7 HELX_P HELX_P4 AA4 SER A 47 ? LEU A 54 ? SER A 383 LEU A 390 5 ? 8 HELX_P HELX_P5 AA5 ASN A 69 ? ILE A 74 ? ASN A 405 ILE A 410 5 ? 6 HELX_P HELX_P6 AA6 GLY A 80 ? ASN A 86 ? GLY A 416 ASN A 422 1 ? 7 HELX_P HELX_P7 AA7 GLY A 166 ? HIS A 169 ? GLY A 502 HIS A 505 5 ? 4 HELX_P HELX_P8 AA8 ARG B 85 ? THR B 89 ? ARG H 86 THR H 90 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 43 SG ? ? ? 1_555 A CYS 96 SG ? ? A CYS 379 A CYS 432 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf2 disulf ? ? A CYS 144 SG ? ? ? 1_555 A CYS 152 SG ? ? A CYS 480 A CYS 488 1_555 ? ? ? ? ? ? ? 2.035 ? ? disulf3 disulf ? ? B CYS 21 SG ? ? ? 1_555 B CYS 94 SG ? ? H CYS 22 H CYS 95 1_555 ? ? ? ? ? ? ? 2.037 ? ? disulf4 disulf ? ? C CYS 23 SG ? ? ? 1_555 C CYS 88 SG ? ? K CYS 23 K CYS 88 1_555 ? ? ? ? ? ? ? 2.039 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ALA 36 A . ? ALA 372 A PRO 37 A ? PRO 373 A 1 -3.27 2 SER 7 C . ? SER 7 K PRO 8 C ? PRO 8 K 1 -3.50 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 2 ? AA3 ? 2 ? AA4 ? 4 ? AA5 ? 5 ? AA6 ? 5 ? AA7 ? 4 ? AA8 ? 6 ? AA9 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA2 1 2 ? anti-parallel AA3 1 2 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel AA4 3 4 ? anti-parallel AA5 1 2 ? anti-parallel AA5 2 3 ? anti-parallel AA5 3 4 ? anti-parallel AA5 4 5 ? anti-parallel AA6 1 2 ? anti-parallel AA6 2 3 ? anti-parallel AA6 3 4 ? anti-parallel AA6 4 5 ? anti-parallel AA7 1 2 ? anti-parallel AA7 2 3 ? anti-parallel AA7 3 4 ? anti-parallel AA8 1 2 ? parallel AA8 2 3 ? anti-parallel AA8 3 4 ? anti-parallel AA8 4 5 ? anti-parallel AA8 5 6 ? anti-parallel AA9 1 2 ? parallel AA9 2 3 ? anti-parallel AA9 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ASN A 18 ? ILE A 22 ? ASN A 354 ILE A 358 AA1 2 ASN A 58 ? ARG A 67 ? ASN A 394 ARG A 403 AA1 3 PRO A 171 ? GLU A 180 ? PRO A 507 GLU A 516 AA1 4 GLY A 95 ? ASN A 101 ? GLY A 431 ASN A 437 AA1 5 ALA A 40 ? TYR A 44 ? ALA A 376 TYR A 380 AA2 1 LEU A 116 ? ARG A 118 ? LEU A 452 ARG A 454 AA2 2 LEU A 156 ? SER A 158 ? LEU A 492 SER A 494 AA3 1 TYR A 137 ? GLN A 138 ? TYR A 473 GLN A 474 AA3 2 CYS A 152 ? TYR A 153 ? CYS A 488 TYR A 489 AA4 1 GLN B 2 ? SER B 6 ? GLN H 3 SER H 7 AA4 2 LEU B 17 ? SER B 24 ? LEU H 18 SER H 25 AA4 3 THR B 76 ? MET B 81 ? THR H 77 MET H 82 AA4 4 PHE B 66 ? ASP B 71 ? PHE H 67 ASP H 72 AA5 1 THR B 56 ? TYR B 58 ? THR H 57 TYR H 59 AA5 2 LEU B 44 ? ILE B 50 ? LEU H 45 ILE H 51 AA5 3 TYR B 32 ? GLN B 38 ? TYR H 33 GLN H 39 AA5 4 ALA B 90 ? SER B 97 ? ALA H 91 SER H 98 AA5 5 PHE B 102 ? TRP B 105 ? PHE H 103 TRP H 106 AA6 1 THR B 56 ? TYR B 58 ? THR H 57 TYR H 59 AA6 2 LEU B 44 ? ILE B 50 ? LEU H 45 ILE H 51 AA6 3 TYR B 32 ? GLN B 38 ? TYR H 33 GLN H 39 AA6 4 ALA B 90 ? SER B 97 ? ALA H 91 SER H 98 AA6 5 THR B 109 ? VAL B 111 ? THR H 110 VAL H 112 AA7 1 LEU C 4 ? SER C 7 ? LEU K 4 SER K 7 AA7 2 VAL C 19 ? ALA C 25 ? VAL K 19 ALA K 25 AA7 3 ASP C 70 ? ILE C 75 ? ASP K 70 ILE K 75 AA7 4 PHE C 62 ? SER C 67 ? PHE K 62 SER K 67 AA8 1 LEU C 11 ? SER C 12 ? LEU K 11 SER K 12 AA8 2 THR C 98 ? GLU C 101 ? THR K 98 GLU K 101 AA8 3 THR C 85 ? HIS C 90 ? THR K 85 HIS K 90 AA8 4 ALA C 34 ? GLN C 38 ? ALA K 34 GLN K 38 AA8 5 LYS C 45 ? TYR C 49 ? LYS K 45 TYR K 49 AA8 6 THR C 53 ? LEU C 54 ? THR K 53 LEU K 54 AA9 1 LEU C 11 ? SER C 12 ? LEU K 11 SER K 12 AA9 2 THR C 98 ? GLU C 101 ? THR K 98 GLU K 101 AA9 3 THR C 85 ? HIS C 90 ? THR K 85 HIS K 90 AA9 4 THR C 93 ? PHE C 94 ? THR K 93 PHE K 94 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ILE A 22 ? N ILE A 358 O VAL A 59 ? O VAL A 395 AA1 2 3 N PHE A 64 ? N PHE A 400 O VAL A 174 ? O VAL A 510 AA1 3 4 O VAL A 175 ? O VAL A 511 N ILE A 98 ? N ILE A 434 AA1 4 5 O GLY A 95 ? O GLY A 431 N TYR A 44 ? N TYR A 380 AA2 1 2 N TYR A 117 ? N TYR A 453 O ARG A 157 ? O ARG A 493 AA3 1 2 N TYR A 137 ? N TYR A 473 O TYR A 153 ? O TYR A 489 AA4 1 2 N VAL B 4 ? N VAL H 5 O ALA B 22 ? O ALA H 23 AA4 2 3 N LEU B 17 ? N LEU H 18 O MET B 81 ? O MET H 82 AA4 3 4 O GLN B 80 ? O GLN H 81 N THR B 67 ? N THR H 68 AA5 1 2 O PHE B 57 ? O PHE H 58 N VAL B 49 ? N VAL H 50 AA5 2 3 O GLU B 45 ? O GLU H 46 N ARG B 37 ? N ARG H 38 AA5 3 4 N ASN B 34 ? N ASN H 35 O ALA B 95 ? O ALA H 96 AA5 4 5 N ARG B 96 ? N ARG H 97 O PHE B 104 ? O PHE H 105 AA6 1 2 O PHE B 57 ? O PHE H 58 N VAL B 49 ? N VAL H 50 AA6 2 3 O GLU B 45 ? O GLU H 46 N ARG B 37 ? N ARG H 38 AA6 3 4 N ASN B 34 ? N ASN H 35 O ALA B 95 ? O ALA H 96 AA6 4 5 N TYR B 92 ? N TYR H 93 O THR B 109 ? O THR H 110 AA7 1 2 N THR C 5 ? N THR K 5 O ARG C 24 ? O ARG K 24 AA7 2 3 N CYS C 23 ? N CYS K 23 O PHE C 71 ? O PHE K 71 AA7 3 4 O THR C 74 ? O THR K 74 N SER C 63 ? N SER K 63 AA8 1 2 N LEU C 11 ? N LEU K 11 O LYS C 99 ? O LYS K 99 AA8 2 3 O THR C 98 ? O THR K 98 N TYR C 86 ? N TYR K 86 AA8 3 4 O THR C 85 ? O THR K 85 N GLN C 38 ? N GLN K 38 AA8 4 5 N GLN C 37 ? N GLN K 37 O LYS C 45 ? O LYS K 45 AA8 5 6 N TYR C 49 ? N TYR K 49 O THR C 53 ? O THR K 53 AA9 1 2 N LEU C 11 ? N LEU K 11 O LYS C 99 ? O LYS K 99 AA9 2 3 O THR C 98 ? O THR K 98 N TYR C 86 ? N TYR K 86 AA9 3 4 N HIS C 90 ? N HIS K 90 O THR C 93 ? O THR K 93 # _atom_sites.entry_id 8GS9 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 337 337 PRO PRO A . n A 1 2 PHE 2 338 338 PHE PHE A . n A 1 3 ASP 3 339 339 ASP ASP A . n A 1 4 GLU 4 340 340 GLU GLU A . n A 1 5 VAL 5 341 341 VAL VAL A . n A 1 6 PHE 6 342 342 PHE PHE A . n A 1 7 ASN 7 343 343 ASN ASN A . n A 1 8 ALA 8 344 344 ALA ALA A . n A 1 9 THR 9 345 345 THR THR A . n A 1 10 ARG 10 346 346 ARG ARG A . n A 1 11 PHE 11 347 347 PHE PHE A . n A 1 12 ALA 12 348 348 ALA ALA A . n A 1 13 SER 13 349 349 SER SER A . n A 1 14 VAL 14 350 350 VAL VAL A . n A 1 15 TYR 15 351 351 TYR TYR A . n A 1 16 ALA 16 352 352 ALA ALA A . n A 1 17 TRP 17 353 353 TRP TRP A . n A 1 18 ASN 18 354 354 ASN ASN A . n A 1 19 ARG 19 355 355 ARG ARG A . n A 1 20 LYS 20 356 356 LYS LYS A . n A 1 21 ARG 21 357 357 ARG ARG A . n A 1 22 ILE 22 358 358 ILE ILE A . n A 1 23 SER 23 359 359 SER SER A . n A 1 24 ASN 24 360 360 ASN ASN A . n A 1 25 CYS 25 361 361 CYS CYS A . n A 1 26 VAL 26 362 362 VAL VAL A . n A 1 27 ALA 27 363 363 ALA ALA A . n A 1 28 ASP 28 364 364 ASP ASP A . n A 1 29 TYR 29 365 365 TYR TYR A . n A 1 30 SER 30 366 366 SER SER A . n A 1 31 VAL 31 367 367 VAL VAL A . n A 1 32 LEU 32 368 368 LEU LEU A . n A 1 33 TYR 33 369 369 TYR TYR A . n A 1 34 ASN 34 370 370 ASN ASN A . n A 1 35 PHE 35 371 371 PHE PHE A . n A 1 36 ALA 36 372 372 ALA ALA A . n A 1 37 PRO 37 373 373 PRO PRO A . n A 1 38 PHE 38 374 374 PHE PHE A . n A 1 39 PHE 39 375 375 PHE PHE A . n A 1 40 ALA 40 376 376 ALA ALA A . n A 1 41 PHE 41 377 377 PHE PHE A . n A 1 42 LYS 42 378 378 LYS LYS A . n A 1 43 CYS 43 379 379 CYS CYS A . n A 1 44 TYR 44 380 380 TYR TYR A . n A 1 45 GLY 45 381 381 GLY GLY A . n A 1 46 VAL 46 382 382 VAL VAL A . n A 1 47 SER 47 383 383 SER SER A . n A 1 48 PRO 48 384 384 PRO PRO A . n A 1 49 THR 49 385 385 THR THR A . n A 1 50 LYS 50 386 386 LYS LYS A . n A 1 51 LEU 51 387 387 LEU LEU A . n A 1 52 ASN 52 388 388 ASN ASN A . n A 1 53 ASP 53 389 389 ASP ASP A . n A 1 54 LEU 54 390 390 LEU LEU A . n A 1 55 CYS 55 391 391 CYS CYS A . n A 1 56 PHE 56 392 392 PHE PHE A . n A 1 57 THR 57 393 393 THR THR A . n A 1 58 ASN 58 394 394 ASN ASN A . n A 1 59 VAL 59 395 395 VAL VAL A . n A 1 60 TYR 60 396 396 TYR TYR A . n A 1 61 ALA 61 397 397 ALA ALA A . n A 1 62 ASP 62 398 398 ASP ASP A . n A 1 63 SER 63 399 399 SER SER A . n A 1 64 PHE 64 400 400 PHE PHE A . n A 1 65 VAL 65 401 401 VAL VAL A . n A 1 66 ILE 66 402 402 ILE ILE A . n A 1 67 ARG 67 403 403 ARG ARG A . n A 1 68 GLY 68 404 404 GLY GLY A . n A 1 69 ASN 69 405 405 ASN ASN A . n A 1 70 GLU 70 406 406 GLU GLU A . n A 1 71 VAL 71 407 407 VAL VAL A . n A 1 72 SER 72 408 408 SER SER A . n A 1 73 GLN 73 409 409 GLN GLN A . n A 1 74 ILE 74 410 410 ILE ILE A . n A 1 75 ALA 75 411 411 ALA ALA A . n A 1 76 PRO 76 412 412 PRO PRO A . n A 1 77 GLY 77 413 413 GLY GLY A . n A 1 78 GLN 78 414 414 GLN GLN A . n A 1 79 THR 79 415 415 THR THR A . n A 1 80 GLY 80 416 416 GLY GLY A . n A 1 81 ASN 81 417 417 ASN ASN A . n A 1 82 ILE 82 418 418 ILE ILE A . n A 1 83 ALA 83 419 419 ALA ALA A . n A 1 84 ASP 84 420 420 ASP ASP A . n A 1 85 TYR 85 421 421 TYR TYR A . n A 1 86 ASN 86 422 422 ASN ASN A . n A 1 87 TYR 87 423 423 TYR TYR A . n A 1 88 LYS 88 424 424 LYS LYS A . n A 1 89 LEU 89 425 425 LEU LEU A . n A 1 90 PRO 90 426 426 PRO PRO A . n A 1 91 ASP 91 427 427 ASP ASP A . n A 1 92 ASP 92 428 428 ASP ASP A . n A 1 93 PHE 93 429 429 PHE PHE A . n A 1 94 THR 94 430 430 THR THR A . n A 1 95 GLY 95 431 431 GLY GLY A . n A 1 96 CYS 96 432 432 CYS CYS A . n A 1 97 VAL 97 433 433 VAL VAL A . n A 1 98 ILE 98 434 434 ILE ILE A . n A 1 99 ALA 99 435 435 ALA ALA A . n A 1 100 TRP 100 436 436 TRP TRP A . n A 1 101 ASN 101 437 437 ASN ASN A . n A 1 102 SER 102 438 438 SER SER A . n A 1 103 ASN 103 439 439 ASN ASN A . n A 1 104 LYS 104 440 440 LYS LYS A . n A 1 105 LEU 105 441 441 LEU LEU A . n A 1 106 ASP 106 442 442 ASP ASP A . n A 1 107 SER 107 443 443 SER SER A . n A 1 108 LYS 108 444 444 LYS LYS A . n A 1 109 VAL 109 445 445 VAL VAL A . n A 1 110 GLY 110 446 446 GLY GLY A . n A 1 111 GLY 111 447 447 GLY GLY A . n A 1 112 ASN 112 448 448 ASN ASN A . n A 1 113 TYR 113 449 449 TYR TYR A . n A 1 114 ASN 114 450 450 ASN ASN A . n A 1 115 TYR 115 451 451 TYR TYR A . n A 1 116 LEU 116 452 452 LEU LEU A . n A 1 117 TYR 117 453 453 TYR TYR A . n A 1 118 ARG 118 454 454 ARG ARG A . n A 1 119 LEU 119 455 455 LEU LEU A . n A 1 120 PHE 120 456 456 PHE PHE A . n A 1 121 ARG 121 457 457 ARG ARG A . n A 1 122 LYS 122 458 458 LYS LYS A . n A 1 123 SER 123 459 459 SER SER A . n A 1 124 ASN 124 460 460 ASN ASN A . n A 1 125 LEU 125 461 461 LEU LEU A . n A 1 126 LYS 126 462 462 LYS LYS A . n A 1 127 PRO 127 463 463 PRO PRO A . n A 1 128 PHE 128 464 464 PHE PHE A . n A 1 129 GLU 129 465 465 GLU GLU A . n A 1 130 ARG 130 466 466 ARG ARG A . n A 1 131 ASP 131 467 467 ASP ASP A . n A 1 132 ILE 132 468 468 ILE ILE A . n A 1 133 SER 133 469 469 SER SER A . n A 1 134 THR 134 470 470 THR THR A . n A 1 135 GLU 135 471 471 GLU GLU A . n A 1 136 ILE 136 472 472 ILE ILE A . n A 1 137 TYR 137 473 473 TYR TYR A . n A 1 138 GLN 138 474 474 GLN GLN A . n A 1 139 ALA 139 475 475 ALA ALA A . n A 1 140 GLY 140 476 476 GLY GLY A . n A 1 141 ASN 141 477 477 ASN ASN A . n A 1 142 LYS 142 478 478 LYS LYS A . n A 1 143 PRO 143 479 479 PRO PRO A . n A 1 144 CYS 144 480 480 CYS CYS A . n A 1 145 ASN 145 481 481 ASN ASN A . n A 1 146 GLY 146 482 482 GLY GLY A . n A 1 147 VAL 147 483 483 VAL VAL A . n A 1 148 ALA 148 484 484 ALA ALA A . n A 1 149 GLY 149 485 485 GLY GLY A . n A 1 150 PHE 150 486 486 PHE PHE A . n A 1 151 ASN 151 487 487 ASN ASN A . n A 1 152 CYS 152 488 488 CYS CYS A . n A 1 153 TYR 153 489 489 TYR TYR A . n A 1 154 PHE 154 490 490 PHE PHE A . n A 1 155 PRO 155 491 491 PRO PRO A . n A 1 156 LEU 156 492 492 LEU LEU A . n A 1 157 ARG 157 493 493 ARG ARG A . n A 1 158 SER 158 494 494 SER SER A . n A 1 159 TYR 159 495 495 TYR TYR A . n A 1 160 GLY 160 496 496 GLY GLY A . n A 1 161 PHE 161 497 497 PHE PHE A . n A 1 162 ARG 162 498 498 ARG ARG A . n A 1 163 PRO 163 499 499 PRO PRO A . n A 1 164 THR 164 500 500 THR THR A . n A 1 165 TYR 165 501 501 TYR TYR A . n A 1 166 GLY 166 502 502 GLY GLY A . n A 1 167 VAL 167 503 503 VAL VAL A . n A 1 168 GLY 168 504 504 GLY GLY A . n A 1 169 HIS 169 505 505 HIS HIS A . n A 1 170 GLN 170 506 506 GLN GLN A . n A 1 171 PRO 171 507 507 PRO PRO A . n A 1 172 TYR 172 508 508 TYR TYR A . n A 1 173 ARG 173 509 509 ARG ARG A . n A 1 174 VAL 174 510 510 VAL VAL A . n A 1 175 VAL 175 511 511 VAL VAL A . n A 1 176 VAL 176 512 512 VAL VAL A . n A 1 177 LEU 177 513 513 LEU LEU A . n A 1 178 SER 178 514 514 SER SER A . n A 1 179 PHE 179 515 515 PHE PHE A . n A 1 180 GLU 180 516 516 GLU GLU A . n A 1 181 LEU 181 517 517 LEU LEU A . n B 2 1 VAL 1 2 2 VAL VAL H . n B 2 2 GLN 2 3 3 GLN GLN H . n B 2 3 LEU 3 4 4 LEU LEU H . n B 2 4 VAL 4 5 5 VAL VAL H . n B 2 5 GLU 5 6 6 GLU GLU H . n B 2 6 SER 6 7 7 SER SER H . n B 2 7 GLY 7 8 8 GLY GLY H . n B 2 8 GLY 8 9 9 GLY GLY H . n B 2 9 GLY 9 10 10 GLY GLY H . n B 2 10 LEU 10 11 11 LEU LEU H . n B 2 11 ILE 11 12 12 ILE ILE H . n B 2 12 GLN 12 13 13 GLN GLN H . n B 2 13 PRO 13 14 14 PRO PRO H . n B 2 14 GLY 14 15 15 GLY GLY H . n B 2 15 GLY 15 16 16 GLY GLY H . n B 2 16 SER 16 17 17 SER SER H . n B 2 17 LEU 17 18 18 LEU LEU H . n B 2 18 ARG 18 19 19 ARG ARG H . n B 2 19 LEU 19 20 20 LEU LEU H . n B 2 20 SER 20 21 21 SER SER H . n B 2 21 CYS 21 22 22 CYS CYS H . n B 2 22 ALA 22 23 23 ALA ALA H . n B 2 23 ALA 23 24 24 ALA ALA H . n B 2 24 SER 24 25 25 SER SER H . n B 2 25 GLU 25 26 26 GLU GLU H . n B 2 26 ILE 26 27 27 ILE ILE H . n B 2 27 ILE 27 28 28 ILE ILE H . n B 2 28 VAL 28 29 29 VAL VAL H . n B 2 29 SER 29 30 30 SER SER H . n B 2 30 ARG 30 31 31 ARG ARG H . n B 2 31 ASN 31 32 32 ASN ASN H . n B 2 32 TYR 32 33 33 TYR TYR H . n B 2 33 MET 33 34 34 MET MET H . n B 2 34 ASN 34 35 35 ASN ASN H . n B 2 35 TRP 35 36 36 TRP TRP H . n B 2 36 VAL 36 37 37 VAL VAL H . n B 2 37 ARG 37 38 38 ARG ARG H . n B 2 38 GLN 38 39 39 GLN GLN H . n B 2 39 ALA 39 40 40 ALA ALA H . n B 2 40 PRO 40 41 41 PRO PRO H . n B 2 41 GLY 41 42 42 GLY GLY H . n B 2 42 LYS 42 43 43 LYS LYS H . n B 2 43 GLY 43 44 44 GLY GLY H . n B 2 44 LEU 44 45 45 LEU LEU H . n B 2 45 GLU 45 46 46 GLU GLU H . n B 2 46 TRP 46 47 47 TRP TRP H . n B 2 47 VAL 47 48 48 VAL VAL H . n B 2 48 SER 48 49 49 SER SER H . n B 2 49 VAL 49 50 50 VAL VAL H . n B 2 50 ILE 50 51 51 ILE ILE H . n B 2 51 TYR 51 52 52 TYR TYR H . n B 2 52 ALA 52 53 53 ALA ALA H . n B 2 53 GLY 53 54 54 GLY GLY H . n B 2 54 GLY 54 55 55 GLY GLY H . n B 2 55 SER 55 56 56 SER SER H . n B 2 56 THR 56 57 57 THR THR H . n B 2 57 PHE 57 58 58 PHE PHE H . n B 2 58 TYR 58 59 59 TYR TYR H . n B 2 59 ALA 59 60 60 ALA ALA H . n B 2 60 ASP 60 61 61 ASP ASP H . n B 2 61 SER 61 62 62 SER SER H . n B 2 62 VAL 62 63 63 VAL VAL H . n B 2 63 LYS 63 64 64 LYS LYS H . n B 2 64 ASP 64 65 65 ASP ASP H . n B 2 65 ARG 65 66 66 ARG ARG H . n B 2 66 PHE 66 67 67 PHE PHE H . n B 2 67 THR 67 68 68 THR THR H . n B 2 68 ILE 68 69 69 ILE ILE H . n B 2 69 SER 69 70 70 SER SER H . n B 2 70 ARG 70 71 71 ARG ARG H . n B 2 71 ASP 71 72 72 ASP ASP H . n B 2 72 ASN 72 73 73 ASN ASN H . n B 2 73 SER 73 74 74 SER SER H . n B 2 74 LYS 74 75 75 LYS LYS H . n B 2 75 ASN 75 76 76 ASN ASN H . n B 2 76 THR 76 77 77 THR THR H . n B 2 77 LEU 77 78 78 LEU LEU H . n B 2 78 TYR 78 79 79 TYR TYR H . n B 2 79 LEU 79 80 80 LEU LEU H . n B 2 80 GLN 80 81 81 GLN GLN H . n B 2 81 MET 81 82 82 MET MET H . n B 2 82 ASN 82 83 83 ASN ASN H . n B 2 83 ARG 83 84 84 ARG ARG H . n B 2 84 LEU 84 85 85 LEU LEU H . n B 2 85 ARG 85 86 86 ARG ARG H . n B 2 86 ALA 86 87 87 ALA ALA H . n B 2 87 GLU 87 88 88 GLU GLU H . n B 2 88 ASP 88 89 89 ASP ASP H . n B 2 89 THR 89 90 90 THR THR H . n B 2 90 ALA 90 91 91 ALA ALA H . n B 2 91 VAL 91 92 92 VAL VAL H . n B 2 92 TYR 92 93 93 TYR TYR H . n B 2 93 TYR 93 94 94 TYR TYR H . n B 2 94 CYS 94 95 95 CYS CYS H . n B 2 95 ALA 95 96 96 ALA ALA H . n B 2 96 ARG 96 97 97 ARG ARG H . n B 2 97 SER 97 98 98 SER SER H . n B 2 98 LEU 98 99 99 LEU LEU H . n B 2 99 GLY 99 100 100 GLY GLY H . n B 2 100 ASP 100 101 101 ASP ASP H . n B 2 101 ARG 101 102 102 ARG ARG H . n B 2 102 PHE 102 103 103 PHE PHE H . n B 2 103 ASP 103 104 104 ASP ASP H . n B 2 104 PHE 104 105 105 PHE PHE H . n B 2 105 TRP 105 106 106 TRP TRP H . n B 2 106 GLY 106 107 107 GLY GLY H . n B 2 107 GLN 107 108 108 GLN GLN H . n B 2 108 GLY 108 109 109 GLY GLY H . n B 2 109 THR 109 110 110 THR THR H . n B 2 110 LEU 110 111 111 LEU LEU H . n B 2 111 VAL 111 112 112 VAL VAL H . n B 2 112 THR 112 113 113 THR THR H . n B 2 113 VAL 113 114 114 VAL VAL H . n C 3 1 ASP 1 1 1 ASP ASP K . n C 3 2 ILE 2 2 2 ILE ILE K . n C 3 3 GLN 3 3 3 GLN GLN K . n C 3 4 LEU 4 4 4 LEU LEU K . n C 3 5 THR 5 5 5 THR THR K . n C 3 6 GLN 6 6 6 GLN GLN K . n C 3 7 SER 7 7 7 SER SER K . n C 3 8 PRO 8 8 8 PRO PRO K . n C 3 9 SER 9 9 9 SER SER K . n C 3 10 SER 10 10 10 SER SER K . n C 3 11 LEU 11 11 11 LEU LEU K . n C 3 12 SER 12 12 12 SER SER K . n C 3 13 ALA 13 13 13 ALA ALA K . n C 3 14 SER 14 14 14 SER SER K . n C 3 15 VAL 15 15 15 VAL VAL K . n C 3 16 GLY 16 16 16 GLY GLY K . n C 3 17 ASP 17 17 17 ASP ASP K . n C 3 18 ARG 18 18 18 ARG ARG K . n C 3 19 VAL 19 19 19 VAL VAL K . n C 3 20 THR 20 20 20 THR THR K . n C 3 21 ILE 21 21 21 ILE ILE K . n C 3 22 THR 22 22 22 THR THR K . n C 3 23 CYS 23 23 23 CYS CYS K . n C 3 24 ARG 24 24 24 ARG ARG K . n C 3 25 ALA 25 25 25 ALA ALA K . n C 3 26 SER 26 26 26 SER SER K . n C 3 27 GLN 27 27 27 GLN GLN K . n C 3 28 GLY 28 28 28 GLY GLY K . n C 3 29 ILE 29 29 29 ILE ILE K . n C 3 30 PRO 30 30 30 PRO PRO K . n C 3 31 SER 31 31 31 SER SER K . n C 3 32 TYR 32 32 32 TYR TYR K . n C 3 33 LEU 33 33 33 LEU LEU K . n C 3 34 ALA 34 34 34 ALA ALA K . n C 3 35 TRP 35 35 35 TRP TRP K . n C 3 36 TYR 36 36 36 TYR TYR K . n C 3 37 GLN 37 37 37 GLN GLN K . n C 3 38 GLN 38 38 38 GLN GLN K . n C 3 39 ASN 39 39 39 ASN ASN K . n C 3 40 PRO 40 40 40 PRO PRO K . n C 3 41 GLY 41 41 41 GLY GLY K . n C 3 42 ARG 42 42 42 ARG ARG K . n C 3 43 ALA 43 43 43 ALA ALA K . n C 3 44 PRO 44 44 44 PRO PRO K . n C 3 45 LYS 45 45 45 LYS LYS K . n C 3 46 LEU 46 46 46 LEU LEU K . n C 3 47 LEU 47 47 47 LEU LEU K . n C 3 48 ILE 48 48 48 ILE ILE K . n C 3 49 TYR 49 49 49 TYR TYR K . n C 3 50 ALA 50 50 50 ALA ALA K . n C 3 51 ALA 51 51 51 ALA ALA K . n C 3 52 SER 52 52 52 SER SER K . n C 3 53 THR 53 53 53 THR THR K . n C 3 54 LEU 54 54 54 LEU LEU K . n C 3 55 GLN 55 55 55 GLN GLN K . n C 3 56 ASN 56 56 56 ASN ASN K . n C 3 57 GLY 57 57 57 GLY GLY K . n C 3 58 VAL 58 58 58 VAL VAL K . n C 3 59 PRO 59 59 59 PRO PRO K . n C 3 60 SER 60 60 60 SER SER K . n C 3 61 ARG 61 61 61 ARG ARG K . n C 3 62 PHE 62 62 62 PHE PHE K . n C 3 63 SER 63 63 63 SER SER K . n C 3 64 GLY 64 64 64 GLY GLY K . n C 3 65 SER 65 65 65 SER SER K . n C 3 66 GLY 66 66 66 GLY GLY K . n C 3 67 SER 67 67 67 SER SER K . n C 3 68 GLY 68 68 68 GLY GLY K . n C 3 69 THR 69 69 69 THR THR K . n C 3 70 ASP 70 70 70 ASP ASP K . n C 3 71 PHE 71 71 71 PHE PHE K . n C 3 72 THR 72 72 72 THR THR K . n C 3 73 LEU 73 73 73 LEU LEU K . n C 3 74 THR 74 74 74 THR THR K . n C 3 75 ILE 75 75 75 ILE ILE K . n C 3 76 SER 76 76 76 SER SER K . n C 3 77 SER 77 77 77 SER SER K . n C 3 78 LEU 78 78 78 LEU LEU K . n C 3 79 GLN 79 79 79 GLN GLN K . n C 3 80 SER 80 80 80 SER SER K . n C 3 81 GLU 81 81 81 GLU GLU K . n C 3 82 ASP 82 82 82 ASP ASP K . n C 3 83 PHE 83 83 83 PHE PHE K . n C 3 84 ALA 84 84 84 ALA ALA K . n C 3 85 THR 85 85 85 THR THR K . n C 3 86 TYR 86 86 86 TYR TYR K . n C 3 87 TYR 87 87 87 TYR TYR K . n C 3 88 CYS 88 88 88 CYS CYS K . n C 3 89 GLN 89 89 89 GLN GLN K . n C 3 90 HIS 90 90 90 HIS HIS K . n C 3 91 GLU 91 91 91 GLU GLU K . n C 3 92 ASP 92 92 92 ASP ASP K . n C 3 93 THR 93 93 93 THR THR K . n C 3 94 PHE 94 94 94 PHE PHE K . n C 3 95 GLY 95 95 95 GLY GLY K . n C 3 96 GLN 96 96 96 GLN GLN K . n C 3 97 GLY 97 97 97 GLY GLY K . n C 3 98 THR 98 98 98 THR THR K . n C 3 99 LYS 99 99 99 LYS LYS K . n C 3 100 LEU 100 100 100 LEU LEU K . n C 3 101 GLU 101 101 101 GLU GLU K . n C 3 102 ILE 102 102 102 ILE ILE K . n # _pdbx_contact_author.id 4 _pdbx_contact_author.email zhangzheng1975@aliyun.com _pdbx_contact_author.name_first zheng _pdbx_contact_author.name_last zhang _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-3544-1389 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2023-05-03 2 'Structure model' 1 1 2023-11-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' citation 4 2 'Structure model' citation_author 5 2 'Structure model' em_3d_fitting_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.journal_volume' 6 2 'Structure model' '_citation.page_first' 7 2 'Structure model' '_citation.page_last' 8 2 'Structure model' '_citation.pdbx_database_id_DOI' 9 2 'Structure model' '_citation.pdbx_database_id_PubMed' 10 2 'Structure model' '_citation.title' 11 2 'Structure model' '_citation.year' 12 2 'Structure model' '_em_3d_fitting_list.accession_code' 13 2 'Structure model' '_em_3d_fitting_list.initial_refinement_model_id' 14 2 'Structure model' '_em_3d_fitting_list.source_name' 15 2 'Structure model' '_em_3d_fitting_list.type' # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name PHENIX _software.os ? _software.os_version ? _software.type ? _software.version 1.20.1_4487: _software.pdbx_ordinal 1 # _em_3d_fitting.entry_id 8GS9 _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value 53.8 _em_3d_fitting.ref_protocol 'RIGID BODY FIT' _em_3d_fitting.ref_space REAL _em_3d_fitting.target_criteria 'Correlation coefficient' _em_3d_fitting.method ? # _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.id 1 _em_3d_fitting_list.details ? _em_3d_fitting_list.pdb_chain_id B _em_3d_fitting_list.pdb_chain_residue_range ? _em_3d_fitting_list.pdb_entry_id 7XB0 _em_3d_fitting_list.initial_refinement_model_id 1 _em_3d_fitting_list.chain_id ? _em_3d_fitting_list.chain_residue_range ? _em_3d_fitting_list.source_name PDB _em_3d_fitting_list.type 'experimental model' _em_3d_fitting_list.accession_code 7XB0 # _em_3d_reconstruction.entry_id 8GS9 _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages 1 _em_3d_reconstruction.num_particles 506671 _em_3d_reconstruction.resolution 2.66 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details PBS _em_buffer.pH 7.0 _em_buffer.specimen_id 1 _em_buffer.name ? # loop_ _em_entity_assembly.id _em_entity_assembly.parent_id _em_entity_assembly.details _em_entity_assembly.name _em_entity_assembly.source _em_entity_assembly.type _em_entity_assembly.entity_id_list _em_entity_assembly.synonym _em_entity_assembly.oligomeric_details 1 0 ? 'Complex of SARS-COV-2 spike RBD and VacBB-551' RECOMBINANT COMPLEX '1, 2, 3' ? ? 2 1 ? 'SARS-COV-2 spike RBD' RECOMBINANT COMPLEX 1 ? ? 3 1 ? VacBB-551 RECOMBINANT COMPLEX 2,3 ? ? # _em_image_scans.entry_id 8GS9 _em_image_scans.id 1 _em_image_scans.dimension_height 4092 _em_image_scans.dimension_width 5760 _em_image_scans.frames_per_image ? _em_image_scans.image_recording_id 1 _em_image_scans.sampling_size ? _em_image_scans.scanner_model ? _em_image_scans.used_frames_per_image ? _em_image_scans.citation_id ? _em_image_scans.number_digital_images ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.details ? # _em_imaging.id 1 _em_imaging.entry_id 8GS9 _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure 'COMA FREE' _em_imaging.c2_aperture_diameter 70 _em_imaging.calibrated_defocus_max 2500 _em_imaging.calibrated_defocus_min 1500 _em_imaging.calibrated_magnification ? _em_imaging.cryogen NITROGEN _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_max 2500 _em_imaging.nominal_defocus_min 1500 _em_imaging.nominal_magnification 105000 _em_imaging.recording_temperature_maximum 90 _em_imaging.recording_temperature_minimum 90 _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 400 _em_sample_support.grid_type 'Quantifoil R1.2/1.3' _em_sample_support.method ? _em_sample_support.film_material ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature 277 _em_vitrification.cryogen_name ETHANE _em_vitrification.details 'blot for 5s, wait for 2s, blot force:0' _em_vitrification.humidity 100 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.entry_id 8GS9 _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 8GS9 _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 8GS9 _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry C1 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 360 ? ? 97.06 13.56 2 1 PHE A 371 ? ? -92.93 51.22 3 1 TYR A 451 ? ? 143.53 78.59 4 1 LEU A 455 ? ? -92.78 -60.19 5 1 GLU H 26 ? ? 77.44 -5.93 6 1 VAL H 48 ? ? -107.64 -61.68 7 1 ASP H 65 ? ? 70.43 -1.28 8 1 SER K 10 ? ? -170.35 141.42 9 1 ALA K 51 ? ? 75.28 -8.40 10 1 SER K 67 ? ? -171.13 -173.78 11 1 ALA K 84 ? ? -163.43 -168.64 12 1 GLU K 91 ? ? 54.56 -114.59 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 PHE N N N N 247 PHE CA C N S 248 PHE C C N N 249 PHE O O N N 250 PHE CB C N N 251 PHE CG C Y N 252 PHE CD1 C Y N 253 PHE CD2 C Y N 254 PHE CE1 C Y N 255 PHE CE2 C Y N 256 PHE CZ C Y N 257 PHE OXT O N N 258 PHE H H N N 259 PHE H2 H N N 260 PHE HA H N N 261 PHE HB2 H N N 262 PHE HB3 H N N 263 PHE HD1 H N N 264 PHE HD2 H N N 265 PHE HE1 H N N 266 PHE HE2 H N N 267 PHE HZ H N N 268 PHE HXT H N N 269 PRO N N N N 270 PRO CA C N S 271 PRO C C N N 272 PRO O O N N 273 PRO CB C N N 274 PRO CG C N N 275 PRO CD C N N 276 PRO OXT O N N 277 PRO H H N N 278 PRO HA H N N 279 PRO HB2 H N N 280 PRO HB3 H N N 281 PRO HG2 H N N 282 PRO HG3 H N N 283 PRO HD2 H N N 284 PRO HD3 H N N 285 PRO HXT H N N 286 SER N N N N 287 SER CA C N S 288 SER C C N N 289 SER O O N N 290 SER CB C N N 291 SER OG O N N 292 SER OXT O N N 293 SER H H N N 294 SER H2 H N N 295 SER HA H N N 296 SER HB2 H N N 297 SER HB3 H N N 298 SER HG H N N 299 SER HXT H N N 300 THR N N N N 301 THR CA C N S 302 THR C C N N 303 THR O O N N 304 THR CB C N R 305 THR OG1 O N N 306 THR CG2 C N N 307 THR OXT O N N 308 THR H H N N 309 THR H2 H N N 310 THR HA H N N 311 THR HB H N N 312 THR HG1 H N N 313 THR HG21 H N N 314 THR HG22 H N N 315 THR HG23 H N N 316 THR HXT H N N 317 TRP N N N N 318 TRP CA C N S 319 TRP C C N N 320 TRP O O N N 321 TRP CB C N N 322 TRP CG C Y N 323 TRP CD1 C Y N 324 TRP CD2 C Y N 325 TRP NE1 N Y N 326 TRP CE2 C Y N 327 TRP CE3 C Y N 328 TRP CZ2 C Y N 329 TRP CZ3 C Y N 330 TRP CH2 C Y N 331 TRP OXT O N N 332 TRP H H N N 333 TRP H2 H N N 334 TRP HA H N N 335 TRP HB2 H N N 336 TRP HB3 H N N 337 TRP HD1 H N N 338 TRP HE1 H N N 339 TRP HE3 H N N 340 TRP HZ2 H N N 341 TRP HZ3 H N N 342 TRP HH2 H N N 343 TRP HXT H N N 344 TYR N N N N 345 TYR CA C N S 346 TYR C C N N 347 TYR O O N N 348 TYR CB C N N 349 TYR CG C Y N 350 TYR CD1 C Y N 351 TYR CD2 C Y N 352 TYR CE1 C Y N 353 TYR CE2 C Y N 354 TYR CZ C Y N 355 TYR OH O N N 356 TYR OXT O N N 357 TYR H H N N 358 TYR H2 H N N 359 TYR HA H N N 360 TYR HB2 H N N 361 TYR HB3 H N N 362 TYR HD1 H N N 363 TYR HD2 H N N 364 TYR HE1 H N N 365 TYR HE2 H N N 366 TYR HH H N N 367 TYR HXT H N N 368 VAL N N N N 369 VAL CA C N S 370 VAL C C N N 371 VAL O O N N 372 VAL CB C N N 373 VAL CG1 C N N 374 VAL CG2 C N N 375 VAL OXT O N N 376 VAL H H N N 377 VAL H2 H N N 378 VAL HA H N N 379 VAL HB H N N 380 VAL HG11 H N N 381 VAL HG12 H N N 382 VAL HG13 H N N 383 VAL HG21 H N N 384 VAL HG22 H N N 385 VAL HG23 H N N 386 VAL HXT H N N 387 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 PHE N CA sing N N 235 PHE N H sing N N 236 PHE N H2 sing N N 237 PHE CA C sing N N 238 PHE CA CB sing N N 239 PHE CA HA sing N N 240 PHE C O doub N N 241 PHE C OXT sing N N 242 PHE CB CG sing N N 243 PHE CB HB2 sing N N 244 PHE CB HB3 sing N N 245 PHE CG CD1 doub Y N 246 PHE CG CD2 sing Y N 247 PHE CD1 CE1 sing Y N 248 PHE CD1 HD1 sing N N 249 PHE CD2 CE2 doub Y N 250 PHE CD2 HD2 sing N N 251 PHE CE1 CZ doub Y N 252 PHE CE1 HE1 sing N N 253 PHE CE2 CZ sing Y N 254 PHE CE2 HE2 sing N N 255 PHE CZ HZ sing N N 256 PHE OXT HXT sing N N 257 PRO N CA sing N N 258 PRO N CD sing N N 259 PRO N H sing N N 260 PRO CA C sing N N 261 PRO CA CB sing N N 262 PRO CA HA sing N N 263 PRO C O doub N N 264 PRO C OXT sing N N 265 PRO CB CG sing N N 266 PRO CB HB2 sing N N 267 PRO CB HB3 sing N N 268 PRO CG CD sing N N 269 PRO CG HG2 sing N N 270 PRO CG HG3 sing N N 271 PRO CD HD2 sing N N 272 PRO CD HD3 sing N N 273 PRO OXT HXT sing N N 274 SER N CA sing N N 275 SER N H sing N N 276 SER N H2 sing N N 277 SER CA C sing N N 278 SER CA CB sing N N 279 SER CA HA sing N N 280 SER C O doub N N 281 SER C OXT sing N N 282 SER CB OG sing N N 283 SER CB HB2 sing N N 284 SER CB HB3 sing N N 285 SER OG HG sing N N 286 SER OXT HXT sing N N 287 THR N CA sing N N 288 THR N H sing N N 289 THR N H2 sing N N 290 THR CA C sing N N 291 THR CA CB sing N N 292 THR CA HA sing N N 293 THR C O doub N N 294 THR C OXT sing N N 295 THR CB OG1 sing N N 296 THR CB CG2 sing N N 297 THR CB HB sing N N 298 THR OG1 HG1 sing N N 299 THR CG2 HG21 sing N N 300 THR CG2 HG22 sing N N 301 THR CG2 HG23 sing N N 302 THR OXT HXT sing N N 303 TRP N CA sing N N 304 TRP N H sing N N 305 TRP N H2 sing N N 306 TRP CA C sing N N 307 TRP CA CB sing N N 308 TRP CA HA sing N N 309 TRP C O doub N N 310 TRP C OXT sing N N 311 TRP CB CG sing N N 312 TRP CB HB2 sing N N 313 TRP CB HB3 sing N N 314 TRP CG CD1 doub Y N 315 TRP CG CD2 sing Y N 316 TRP CD1 NE1 sing Y N 317 TRP CD1 HD1 sing N N 318 TRP CD2 CE2 doub Y N 319 TRP CD2 CE3 sing Y N 320 TRP NE1 CE2 sing Y N 321 TRP NE1 HE1 sing N N 322 TRP CE2 CZ2 sing Y N 323 TRP CE3 CZ3 doub Y N 324 TRP CE3 HE3 sing N N 325 TRP CZ2 CH2 doub Y N 326 TRP CZ2 HZ2 sing N N 327 TRP CZ3 CH2 sing Y N 328 TRP CZ3 HZ3 sing N N 329 TRP CH2 HH2 sing N N 330 TRP OXT HXT sing N N 331 TYR N CA sing N N 332 TYR N H sing N N 333 TYR N H2 sing N N 334 TYR CA C sing N N 335 TYR CA CB sing N N 336 TYR CA HA sing N N 337 TYR C O doub N N 338 TYR C OXT sing N N 339 TYR CB CG sing N N 340 TYR CB HB2 sing N N 341 TYR CB HB3 sing N N 342 TYR CG CD1 doub Y N 343 TYR CG CD2 sing Y N 344 TYR CD1 CE1 sing Y N 345 TYR CD1 HD1 sing N N 346 TYR CD2 CE2 doub Y N 347 TYR CD2 HD2 sing N N 348 TYR CE1 CZ doub Y N 349 TYR CE1 HE1 sing N N 350 TYR CE2 CZ sing Y N 351 TYR CE2 HE2 sing N N 352 TYR CZ OH sing N N 353 TYR OH HH sing N N 354 TYR OXT HXT sing N N 355 VAL N CA sing N N 356 VAL N H sing N N 357 VAL N H2 sing N N 358 VAL CA C sing N N 359 VAL CA CB sing N N 360 VAL CA HA sing N N 361 VAL C O doub N N 362 VAL C OXT sing N N 363 VAL CB CG1 sing N N 364 VAL CB CG2 sing N N 365 VAL CB HB sing N N 366 VAL CG1 HG11 sing N N 367 VAL CG1 HG12 sing N N 368 VAL CG1 HG13 sing N N 369 VAL CG2 HG21 sing N N 370 VAL CG2 HG22 sing N N 371 VAL CG2 HG23 sing N N 372 VAL OXT HXT sing N N 373 # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ? # loop_ _em_entity_assembly_naturalsource.id _em_entity_assembly_naturalsource.entity_assembly_id _em_entity_assembly_naturalsource.cell _em_entity_assembly_naturalsource.cellular_location _em_entity_assembly_naturalsource.ncbi_tax_id _em_entity_assembly_naturalsource.organ _em_entity_assembly_naturalsource.organelle _em_entity_assembly_naturalsource.organism _em_entity_assembly_naturalsource.strain _em_entity_assembly_naturalsource.tissue 2 1 ? ? 2697049 ? ? 'Severe acute respiratory syndrome coronavirus 2' ? ? 3 2 ? ? 9606 ? ? 'Homo sapiens' ? ? # loop_ _em_entity_assembly_recombinant.id _em_entity_assembly_recombinant.entity_assembly_id _em_entity_assembly_recombinant.cell _em_entity_assembly_recombinant.ncbi_tax_id _em_entity_assembly_recombinant.organism _em_entity_assembly_recombinant.plasmid _em_entity_assembly_recombinant.strain 2 1 HEK293 9606 'Homo sapiens' ? ? 3 2 HEK293 9606 'Homo sapiens' ? ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 50 _em_image_recording.average_exposure_time 1.82 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images 6153 _em_image_recording.avg_electron_dose_per_subtomogram ? # _em_imaging_optics.id 1 _em_imaging_optics.imaging_id 1 _em_imaging_optics.chr_aberration_corrector ? _em_imaging_optics.energyfilter_lower ? _em_imaging_optics.energyfilter_name 'GIF Bioquantum' _em_imaging_optics.energyfilter_upper ? _em_imaging_optics.energyfilter_slit_width 20 _em_imaging_optics.phase_plate ? _em_imaging_optics.sph_aberration_corrector ? _em_imaging_optics.details ? # _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.details ? _em_particle_selection.method ? _em_particle_selection.num_particles_selected 5391498 _em_particle_selection.reference_model ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'PARTICLE SELECTION' 'Blob picker was used to automatically select particle images.' cryoSPARC 3.2 1 ? ? 2 'IMAGE ACQUISITION' ? EPU ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? Gctf 1.18 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? 'UCSF Chimera' 1.16 ? 1 ? 8 OTHER ? ? ? ? ? ? 9 'MODEL REFINEMENT' ? PHENIX 1.20 ? 1 ? 10 'INITIAL EULER ASSIGNMENT' ? cryoSPARC 3.2 1 ? ? 11 'FINAL EULER ASSIGNMENT' ? cryoSPARC 3.2 1 ? ? 12 CLASSIFICATION ? cryoSPARC 3.2 1 ? ? 13 RECONSTRUCTION ? cryoSPARC 3.2 1 ? ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration 1.2 _em_specimen.details 'SARS-COV-2 spike proteins were concentrated to about 2mg/mL and incubated with full-length IgG nAbs for 30min (1:2 molar ratio)' _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'National Science Foundation (NSF, China)' _pdbx_audit_support.country China _pdbx_audit_support.grant_number 82025022 _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 7XB0 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #