HEADER IMMUNE SYSTEM 15-SEP-22 8GVG TITLE THE COMPLEX BETWEEN PUBLIC TCR TD08 AND HLA-A24 BOUND TO HIV-1 NEF138- TITLE 2 8 (2F) PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TD08 TCR ALPHA CHAIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: TD08 TCR BETA CHAIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: MHC CLASS I ANTIGEN; COMPND 11 CHAIN: H; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 4; COMPND 14 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 15 CHAIN: L; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 5; COMPND 18 MOLECULE: MUTATED 8-MER PEPTIDE FROM PROTEIN NEF; COMPND 19 CHAIN: P; COMPND 20 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: HLA-A; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 MOL_ID: 4; SOURCE 19 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 20 ORGANISM_COMMON: HUMAN; SOURCE 21 ORGANISM_TAXID: 9606; SOURCE 22 GENE: B2M, CDABP0092, HDCMA22P; SOURCE 23 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 24 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 25 MOL_ID: 5; SOURCE 26 SYNTHETIC: YES; SOURCE 27 ORGANISM_SCIENTIFIC: HIV WHOLE-GENOME VECTOR AA1305#18; SOURCE 28 ORGANISM_TAXID: 672471 KEYWDS COMPLEX STRUCTURE, PUBLIC TCRS, T CELL IMMUNITY, NEF138-8 (2F) KEYWDS 2 EPITOPE, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR G.F.GAO,Y.SHI,K.MA,Y.CHAI,J.GUAN,J.QI,S.TAN,T.DONG,A.IWAMOTO, AUTHOR 2 A.KAWANA-TACHIKAWA REVDAT 3 29-NOV-23 8GVG 1 REMARK REVDAT 2 26-OCT-22 8GVG 1 JRNL REVDAT 1 19-OCT-22 8GVG 0 JRNL AUTH K.MA,Y.CHAI,J.GUAN,S.TAN,J.QI,A.KAWANA-TACHIKAWA,T.DONG, JRNL AUTH 2 A.IWAMOTO,Y.SHI,G.F.GAO JRNL TITL MOLECULAR BASIS FOR THE RECOGNITION OF HIV NEF138-8 EPITOPE JRNL TITL 2 BY A PAIR OF HUMAN PUBLIC T CELL RECEPTORS. JRNL REF J IMMUNOL. V. 209 1652 2022 JRNL REFN ESSN 1550-6606 JRNL PMID 36130828 JRNL DOI 10.4049/JIMMUNOL.2200191 REMARK 2 REMARK 2 RESOLUTION. 3.37 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.37 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.1 REMARK 3 NUMBER OF REFLECTIONS : 15767 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.300 REMARK 3 R VALUE (WORKING SET) : 0.299 REMARK 3 FREE R VALUE : 0.320 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.190 REMARK 3 FREE R VALUE TEST SET COUNT : 818 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.37 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.58 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2179 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.6275 REMARK 3 BIN FREE R VALUE SET COUNT : 143 REMARK 3 BIN FREE R VALUE : 0.6592 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6655 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 94.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 148.2 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.918 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 205 REMARK 3 ORIGIN FOR THE GROUP (A): -9.6864 3.8709 0.4683 REMARK 3 T TENSOR REMARK 3 T11: 0.8620 T22: 0.8221 REMARK 3 T33: 0.9268 T12: 0.1805 REMARK 3 T13: -0.0042 T23: 0.1870 REMARK 3 L TENSOR REMARK 3 L11: 1.8689 L22: 3.0033 REMARK 3 L33: 3.7056 L12: 0.3044 REMARK 3 L13: -0.3464 L23: -0.1919 REMARK 3 S TENSOR REMARK 3 S11: 0.2166 S12: 0.2832 S13: 0.4903 REMARK 3 S21: -0.7543 S22: -0.1843 S23: 0.2468 REMARK 3 S31: -0.6650 S32: 0.2557 S33: 0.0462 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 245 REMARK 3 ORIGIN FOR THE GROUP (A): -12.2670 16.9799 14.6833 REMARK 3 T TENSOR REMARK 3 T11: 1.9213 T22: 0.9232 REMARK 3 T33: 1.4151 T12: 0.0725 REMARK 3 T13: 0.2068 T23: 0.0568 REMARK 3 L TENSOR REMARK 3 L11: 1.5789 L22: 1.7684 REMARK 3 L33: 2.7542 L12: -0.7480 REMARK 3 L13: 0.0767 L23: -0.2456 REMARK 3 S TENSOR REMARK 3 S11: 0.3757 S12: -0.1291 S13: 0.9924 REMARK 3 S21: 0.5438 S22: -0.1883 S23: 0.1713 REMARK 3 S31: -1.9671 S32: 0.2443 S33: -0.0349 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : P 1 P 8 REMARK 3 ORIGIN FOR THE GROUP (A): -19.3452 -13.0448 36.8555 REMARK 3 T TENSOR REMARK 3 T11: 0.8805 T22: 1.9496 REMARK 3 T33: 0.9203 T12: 0.5525 REMARK 3 T13: 0.1527 T23: 0.3959 REMARK 3 L TENSOR REMARK 3 L11: 0.9095 L22: 4.6074 REMARK 3 L33: 0.2343 L12: 2.0427 REMARK 3 L13: 0.4686 L23: 1.0496 REMARK 3 S TENSOR REMARK 3 S11: -0.1712 S12: -0.5225 S13: -1.6453 REMARK 3 S21: 1.2281 S22: -0.3139 S23: -0.5195 REMARK 3 S31: -1.6483 S32: 0.8100 S33: 0.4250 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1 H 274 REMARK 3 ORIGIN FOR THE GROUP (A): -14.9628 -26.2209 49.8862 REMARK 3 T TENSOR REMARK 3 T11: 0.8746 T22: 1.2296 REMARK 3 T33: 1.0773 T12: -0.0085 REMARK 3 T13: 0.0093 T23: 0.1333 REMARK 3 L TENSOR REMARK 3 L11: 0.8604 L22: 2.2510 REMARK 3 L33: 3.0174 L12: -0.7747 REMARK 3 L13: 1.7204 L23: -1.7116 REMARK 3 S TENSOR REMARK 3 S11: 0.2508 S12: -0.3239 S13: -0.3879 REMARK 3 S21: 0.0484 S22: 0.1578 S23: 0.3125 REMARK 3 S31: 0.2076 S32: 0.0476 S33: -0.3758 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 1 L 99 REMARK 3 ORIGIN FOR THE GROUP (A): -12.2053 -21.4333 68.0096 REMARK 3 T TENSOR REMARK 3 T11: 1.2347 T22: 1.5586 REMARK 3 T33: 1.0967 T12: 0.1588 REMARK 3 T13: -0.0430 T23: 0.1926 REMARK 3 L TENSOR REMARK 3 L11: 3.3530 L22: 1.1946 REMARK 3 L33: 2.2142 L12: -0.0363 REMARK 3 L13: 0.6852 L23: -0.1125 REMARK 3 S TENSOR REMARK 3 S11: -0.0670 S12: -0.6078 S13: -0.1450 REMARK 3 S21: 0.8647 S22: 0.2015 S23: 0.1025 REMARK 3 S31: -0.4280 S32: -0.5237 S33: -0.1119 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.11 REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8GVG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-SEP-22. REMARK 100 THE DEPOSITION ID IS D_1300032261. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JAN-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : M REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16829 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.360 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 16.90 REMARK 200 R MERGE (I) : 0.12700 REMARK 200 R SYM (I) : 0.12700 REMARK 200 FOR THE DATA SET : 22.9330 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.36 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 12.50 REMARK 200 R MERGE FOR SHELL (I) : 0.96800 REMARK 200 R SYM FOR SHELL (I) : 0.96800 REMARK 200 FOR SHELL : 5.539 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 3VXM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM SULFATE, 0.1 M BIS-TRIS REMARK 280 PROPANE (PH 7.5), 20% PEG 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 255.91267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 127.95633 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 127.95633 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 255.91267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, H, L, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 PRO A 206 REMARK 465 GLU A 207 REMARK 465 SER A 208 REMARK 465 SER A 209 REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 THR B 3 REMARK 465 ASN B 186 REMARK 465 ASP B 187 REMARK 465 ASP B 246 REMARK 465 MET H 0 REMARK 465 MET L 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS H 146 OXT TRP P 8 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 121 72.48 -159.05 REMARK 500 ASN B 31 78.39 -114.92 REMARK 500 ARG B 32 149.03 -178.49 REMARK 500 ASN B 52 -9.97 65.91 REMARK 500 GLU B 53 -39.82 -135.26 REMARK 500 LEU B 61 0.52 -69.42 REMARK 500 ARG B 98 -8.82 71.90 REMARK 500 PRO B 183 1.18 -67.42 REMARK 500 ASP H 30 30.14 -141.04 REMARK 500 HIS H 114 114.82 -161.58 REMARK 500 LYS H 146 -70.08 -60.92 REMARK 500 TRP H 147 -7.02 -48.75 REMARK 500 PRO L 32 -164.42 -75.41 REMARK 500 THR L 73 -169.74 -128.75 REMARK 500 REMARK 500 REMARK: NULL DBREF 8GVG A 1 209 PDB 8GVG 8GVG 1 209 DBREF 8GVG B 1 246 PDB 8GVG 8GVG 1 246 DBREF 8GVG H 1 274 UNP F6IQZ4 F6IQZ4_HUMAN 25 298 DBREF 8GVG L 1 99 UNP P61769 B2MG_HUMAN 21 119 DBREF 8GVG P 1 8 PDB 8GVG 8GVG 1 8 SEQADV 8GVG MET H 0 UNP F6IQZ4 INITIATING METHIONINE SEQADV 8GVG MET L 0 UNP P61769 EXPRESSION TAG SEQRES 1 A 209 MET ALA GLN SER VAL THR GLN PRO ASP ILE HIS ILE THR SEQRES 2 A 209 VAL SER GLU GLY ALA SER LEU GLU LEU ARG CYS ASN TYR SEQRES 3 A 209 SER TYR GLY ALA THR PRO TYR LEU PHE TRP TYR VAL GLN SEQRES 4 A 209 SER PRO GLY GLN GLY LEU GLN LEU LEU LEU LYS TYR PHE SEQRES 5 A 209 SER GLY ASP THR LEU VAL GLN GLY ILE LYS GLY PHE GLU SEQRES 6 A 209 ALA GLU PHE LYS ARG SER GLN SER SER PHE ASN LEU ARG SEQRES 7 A 209 LYS PRO SER VAL HIS TRP SER ASP ALA ALA GLU TYR PHE SEQRES 8 A 209 CYS ALA VAL GLY PHE THR GLY GLY GLY ASN LYS LEU THR SEQRES 9 A 209 PHE GLY THR GLY THR GLN LEU LYS VAL GLU LEU ASN ILE SEQRES 10 A 209 GLN ASN PRO ASP PRO ALA VAL TYR GLN LEU ARG ASP SER SEQRES 11 A 209 LYS SER SER ASP LYS SER VAL CYS LEU PHE THR ASP PHE SEQRES 12 A 209 ASP SER GLN THR ASN VAL SER GLN SER LYS ASP SER ASP SEQRES 13 A 209 VAL TYR ILE THR ASP LYS CYS VAL LEU ASP MET ARG SER SEQRES 14 A 209 MET ASP PHE LYS SER ASN SER ALA VAL ALA TRP SER ASN SEQRES 15 A 209 LYS SER ASP PHE ALA CYS ALA ASN ALA PHE ASN ASN SER SEQRES 16 A 209 ILE ILE PRO GLU ASP THR PHE PHE PRO SER PRO GLU SER SEQRES 17 A 209 SER SEQRES 1 B 246 MET ASP THR GLY VAL SER GLN ASP PRO ARG HIS LYS ILE SEQRES 2 B 246 THR LYS ARG GLY GLN ASN VAL THR PHE ARG CYS ASP PRO SEQRES 3 B 246 ILE SER GLU HIS ASN ARG LEU TYR TRP TYR ARG GLN THR SEQRES 4 B 246 LEU GLY GLN GLY PRO GLU PHE LEU THR TYR PHE GLN ASN SEQRES 5 B 246 GLU ALA GLN LEU GLU LYS SER ARG LEU LEU SER ASP ARG SEQRES 6 B 246 PHE SER ALA GLU ARG PRO LYS GLY SER PHE SER THR LEU SEQRES 7 B 246 GLU ILE GLN ARG THR GLU GLN GLY ASP SER ALA MET TYR SEQRES 8 B 246 LEU CYS ALA SER SER ASP ARG ASP ARG VAL PRO GLU THR SEQRES 9 B 246 GLN TYR PHE GLY PRO GLY THR ARG LEU LEU VAL LEU GLU SEQRES 10 B 246 ASP LEU LYS ASN VAL PHE PRO PRO GLU VAL ALA VAL PHE SEQRES 11 B 246 GLU PRO SER GLU ALA GLU ILE SER HIS THR GLN LYS ALA SEQRES 12 B 246 THR LEU VAL CYS LEU ALA THR GLY PHE TYR PRO ASP HIS SEQRES 13 B 246 VAL GLU LEU SER TRP TRP VAL ASN GLY LYS GLU VAL HIS SEQRES 14 B 246 SER GLY VAL CYS THR ASP PRO GLN PRO LEU LYS GLU GLN SEQRES 15 B 246 PRO ALA LEU ASN ASP SER ARG TYR ALA LEU SER SER ARG SEQRES 16 B 246 LEU ARG VAL SER ALA THR PHE TRP GLN ASN PRO ARG ASN SEQRES 17 B 246 HIS PHE ARG CYS GLN VAL GLN PHE TYR GLY LEU SER GLU SEQRES 18 B 246 ASN ASP GLU TRP THR GLN ASP ARG ALA LYS PRO VAL THR SEQRES 19 B 246 GLN ILE VAL SER ALA GLU ALA TRP GLY ARG ALA ASP SEQRES 1 H 275 MET GLY SER HIS SER MET ARG TYR PHE SER THR SER VAL SEQRES 2 H 275 SER ARG PRO GLY ARG GLY GLU PRO ARG PHE ILE ALA VAL SEQRES 3 H 275 GLY TYR VAL ASP ASP THR GLN PHE VAL ARG PHE ASP SER SEQRES 4 H 275 ASP ALA ALA SER GLN ARG MET GLU PRO ARG ALA PRO TRP SEQRES 5 H 275 ILE GLU GLN GLU GLY PRO GLU TYR TRP ASP GLU GLU THR SEQRES 6 H 275 GLY LYS VAL LYS ALA HIS SER GLN THR ASP ARG GLU ASN SEQRES 7 H 275 LEU ARG ILE ALA LEU ARG TYR TYR ASN GLN SER GLU ALA SEQRES 8 H 275 GLY SER HIS THR LEU GLN MET MET PHE GLY CYS ASP VAL SEQRES 9 H 275 GLY SER ASP GLY ARG PHE LEU ARG GLY TYR HIS GLN TYR SEQRES 10 H 275 ALA TYR ASP GLY LYS ASP TYR ILE ALA LEU LYS GLU ASP SEQRES 11 H 275 LEU ARG SER TRP THR ALA ALA ASP MET ALA ALA GLN ILE SEQRES 12 H 275 THR LYS ARG LYS TRP GLU ALA ALA HIS VAL ALA GLU GLN SEQRES 13 H 275 GLN ARG ALA TYR LEU GLU GLY THR CYS VAL ASP GLY LEU SEQRES 14 H 275 ARG ARG TYR LEU GLU ASN GLY LYS GLU THR LEU GLN ARG SEQRES 15 H 275 THR ASP PRO PRO LYS THR HIS MET THR HIS HIS PRO ILE SEQRES 16 H 275 SER ASP HIS GLU ALA THR LEU ARG CYS TRP ALA LEU GLY SEQRES 17 H 275 PHE TYR PRO ALA GLU ILE THR LEU THR TRP GLN ARG ASP SEQRES 18 H 275 GLY GLU ASP GLN THR GLN ASP THR GLU LEU VAL GLU THR SEQRES 19 H 275 ARG PRO ALA GLY ASP GLY THR PHE GLN LYS TRP ALA ALA SEQRES 20 H 275 VAL VAL VAL PRO SER GLY GLU GLU GLN ARG TYR THR CYS SEQRES 21 H 275 HIS VAL GLN HIS GLU GLY LEU PRO LYS PRO LEU THR LEU SEQRES 22 H 275 ARG TRP SEQRES 1 L 100 MET ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG SEQRES 2 L 100 HIS PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS SEQRES 3 L 100 TYR VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL ASP SEQRES 4 L 100 LEU LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS SEQRES 5 L 100 SER ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU SEQRES 6 L 100 LEU TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU SEQRES 7 L 100 TYR ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN PRO SEQRES 8 L 100 LYS ILE VAL LYS TRP ASP ARG ASP MET SEQRES 1 P 8 ARG PHE PRO LEU THR PHE GLY TRP HELIX 1 AA1 PHE A 96 GLY A 100 5 5 HELIX 2 AA2 ALA A 187 ALA A 191 5 5 HELIX 3 AA3 GLU B 84 SER B 88 5 5 HELIX 4 AA4 SER B 133 GLN B 141 1 9 HELIX 5 AA5 ALA B 200 ASN B 205 1 6 HELIX 6 AA6 PRO H 50 GLU H 55 5 6 HELIX 7 AA7 GLY H 56 TYR H 85 1 30 HELIX 8 AA8 ASP H 137 ALA H 150 1 14 HELIX 9 AA9 HIS H 151 GLU H 161 1 11 HELIX 10 AB1 GLY H 162 GLY H 175 1 14 SHEET 1 AA1 2 VAL A 5 THR A 6 0 SHEET 2 AA1 2 ASN A 25 TYR A 26 -1 O ASN A 25 N THR A 6 SHEET 1 AA2 5 HIS A 11 SER A 15 0 SHEET 2 AA2 5 THR A 109 GLU A 114 1 O GLU A 114 N VAL A 14 SHEET 3 AA2 5 GLU A 89 GLY A 95 -1 N TYR A 90 O THR A 109 SHEET 4 AA2 5 TYR A 33 GLN A 39 -1 N TYR A 37 O PHE A 91 SHEET 5 AA2 5 LEU A 45 LYS A 50 -1 O GLN A 46 N VAL A 38 SHEET 1 AA3 4 HIS A 11 SER A 15 0 SHEET 2 AA3 4 THR A 109 GLU A 114 1 O GLU A 114 N VAL A 14 SHEET 3 AA3 4 GLU A 89 GLY A 95 -1 N TYR A 90 O THR A 109 SHEET 4 AA3 4 THR A 104 PHE A 105 -1 O THR A 104 N VAL A 94 SHEET 1 AA4 4 LEU A 20 LEU A 22 0 SHEET 2 AA4 4 SER A 74 LYS A 79 -1 O LEU A 77 N LEU A 22 SHEET 3 AA4 4 GLU A 65 LYS A 69 -1 N LYS A 69 O SER A 74 SHEET 4 AA4 4 LEU A 57 GLN A 59 -1 N VAL A 58 O ALA A 66 SHEET 1 AA5 4 ALA A 123 GLN A 126 0 SHEET 2 AA5 4 SER A 136 THR A 141 -1 O LEU A 139 N TYR A 125 SHEET 3 AA5 4 PHE A 172 SER A 181 -1 O ALA A 177 N PHE A 140 SHEET 4 AA5 4 VAL A 157 ILE A 159 -1 N TYR A 158 O TRP A 180 SHEET 1 AA6 4 ALA A 123 GLN A 126 0 SHEET 2 AA6 4 SER A 136 THR A 141 -1 O LEU A 139 N TYR A 125 SHEET 3 AA6 4 PHE A 172 SER A 181 -1 O ALA A 177 N PHE A 140 SHEET 4 AA6 4 CYS A 163 MET A 167 -1 N MET A 167 O PHE A 172 SHEET 1 AA7 4 SER B 6 ASP B 8 0 SHEET 2 AA7 4 VAL B 20 ASP B 25 -1 O ARG B 23 N ASP B 8 SHEET 3 AA7 4 SER B 76 ILE B 80 -1 O SER B 76 N CYS B 24 SHEET 4 AA7 4 PHE B 66 GLU B 69 -1 N SER B 67 O GLU B 79 SHEET 1 AA8 6 HIS B 11 LYS B 15 0 SHEET 2 AA8 6 THR B 111 LEU B 116 1 O LEU B 116 N THR B 14 SHEET 3 AA8 6 MET B 90 SER B 95 -1 N TYR B 91 O THR B 111 SHEET 4 AA8 6 LEU B 33 GLN B 38 -1 N GLN B 38 O MET B 90 SHEET 5 AA8 6 GLU B 45 PHE B 50 -1 O GLU B 45 N ARG B 37 SHEET 6 AA8 6 GLN B 55 LYS B 58 -1 O LEU B 56 N TYR B 49 SHEET 1 AA9 4 HIS B 11 LYS B 15 0 SHEET 2 AA9 4 THR B 111 LEU B 116 1 O LEU B 116 N THR B 14 SHEET 3 AA9 4 MET B 90 SER B 95 -1 N TYR B 91 O THR B 111 SHEET 4 AA9 4 TYR B 106 PHE B 107 -1 O TYR B 106 N SER B 95 SHEET 1 AB1 4 GLU B 126 PHE B 130 0 SHEET 2 AB1 4 LYS B 142 PHE B 152 -1 O VAL B 146 N PHE B 130 SHEET 3 AB1 4 TYR B 190 SER B 199 -1 O TYR B 190 N PHE B 152 SHEET 4 AB1 4 VAL B 172 THR B 174 -1 N CYS B 173 O ARG B 195 SHEET 1 AB2 4 GLU B 126 PHE B 130 0 SHEET 2 AB2 4 LYS B 142 PHE B 152 -1 O VAL B 146 N PHE B 130 SHEET 3 AB2 4 TYR B 190 SER B 199 -1 O TYR B 190 N PHE B 152 SHEET 4 AB2 4 LEU B 179 LYS B 180 -1 N LEU B 179 O ALA B 191 SHEET 1 AB3 4 LYS B 166 GLU B 167 0 SHEET 2 AB3 4 VAL B 157 VAL B 163 -1 N VAL B 163 O LYS B 166 SHEET 3 AB3 4 HIS B 209 PHE B 216 -1 O GLN B 213 N SER B 160 SHEET 4 AB3 4 GLN B 235 TRP B 242 -1 O GLN B 235 N PHE B 216 SHEET 1 AB4 6 GLU H 46 PRO H 47 0 SHEET 2 AB4 6 THR H 31 ASP H 37 -1 N ARG H 35 O GLU H 46 SHEET 3 AB4 6 ARG H 21 VAL H 28 -1 N GLY H 26 O VAL H 34 SHEET 4 AB4 6 HIS H 3 VAL H 12 -1 N ARG H 6 O TYR H 27 SHEET 5 AB4 6 CYS H 101 VAL H 103 -1 O VAL H 103 N HIS H 3 SHEET 6 AB4 6 PHE H 109 GLY H 112 -1 O LEU H 110 N ASP H 102 SHEET 1 AB5 8 GLU H 46 PRO H 47 0 SHEET 2 AB5 8 THR H 31 ASP H 37 -1 N ARG H 35 O GLU H 46 SHEET 3 AB5 8 ARG H 21 VAL H 28 -1 N GLY H 26 O VAL H 34 SHEET 4 AB5 8 HIS H 3 VAL H 12 -1 N ARG H 6 O TYR H 27 SHEET 5 AB5 8 THR H 94 MET H 98 -1 O LEU H 95 N SER H 11 SHEET 6 AB5 8 GLN H 115 TYR H 118 -1 O GLN H 115 N MET H 98 SHEET 7 AB5 8 LYS H 121 LEU H 126 -1 O LYS H 121 N TYR H 118 SHEET 8 AB5 8 TRP H 133 ALA H 135 -1 O THR H 134 N ALA H 125 SHEET 1 AB6 4 LYS H 186 MET H 189 0 SHEET 2 AB6 4 GLU H 198 PHE H 208 -1 O LEU H 206 N LYS H 186 SHEET 3 AB6 4 PHE H 241 PRO H 250 -1 O ALA H 245 N CYS H 203 SHEET 4 AB6 4 THR H 228 LEU H 230 -1 N GLU H 229 O ALA H 246 SHEET 1 AB7 4 HIS H 192 PRO H 193 0 SHEET 2 AB7 4 GLU H 198 PHE H 208 -1 O THR H 200 N HIS H 192 SHEET 3 AB7 4 PHE H 241 PRO H 250 -1 O ALA H 245 N CYS H 203 SHEET 4 AB7 4 ARG H 234 PRO H 235 -1 N ARG H 234 O GLN H 242 SHEET 1 AB8 4 GLU H 222 GLN H 224 0 SHEET 2 AB8 4 ILE H 213 ARG H 219 -1 N ARG H 219 O GLU H 222 SHEET 3 AB8 4 TYR H 257 HIS H 263 -1 O GLN H 262 N THR H 214 SHEET 4 AB8 4 LEU H 270 ARG H 273 -1 O LEU H 272 N CYS H 259 SHEET 1 AB9 4 LYS L 6 SER L 11 0 SHEET 2 AB9 4 ASN L 21 PHE L 30 -1 O ASN L 24 N TYR L 10 SHEET 3 AB9 4 PHE L 62 PHE L 70 -1 O TYR L 66 N CYS L 25 SHEET 4 AB9 4 GLU L 50 HIS L 51 -1 N GLU L 50 O TYR L 67 SHEET 1 AC1 4 LYS L 6 SER L 11 0 SHEET 2 AC1 4 ASN L 21 PHE L 30 -1 O ASN L 24 N TYR L 10 SHEET 3 AC1 4 PHE L 62 PHE L 70 -1 O TYR L 66 N CYS L 25 SHEET 4 AC1 4 SER L 55 PHE L 56 -1 N SER L 55 O TYR L 63 SHEET 1 AC2 4 GLU L 44 ARG L 45 0 SHEET 2 AC2 4 GLU L 36 LYS L 41 -1 N LYS L 41 O GLU L 44 SHEET 3 AC2 4 TYR L 78 ASN L 83 -1 O ARG L 81 N ASP L 38 SHEET 4 AC2 4 LYS L 91 LYS L 94 -1 O LYS L 91 N VAL L 82 SSBOND 1 CYS A 24 CYS A 92 1555 1555 2.03 SSBOND 2 CYS A 138 CYS A 188 1555 1555 2.03 SSBOND 3 CYS B 24 CYS B 93 1555 1555 2.03 SSBOND 4 CYS B 147 CYS B 212 1555 1555 2.03 SSBOND 5 CYS H 101 CYS H 164 1555 1555 2.03 SSBOND 6 CYS H 203 CYS H 259 1555 1555 2.03 SSBOND 7 CYS L 25 CYS L 80 1555 1555 2.03 CISPEP 1 ASP B 8 PRO B 9 0 -3.93 CISPEP 2 TYR B 153 PRO B 154 0 -2.36 CISPEP 3 TYR H 209 PRO H 210 0 0.15 CISPEP 4 HIS L 31 PRO L 32 0 3.58 CRYST1 71.035 71.035 383.869 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014078 0.008128 0.000000 0.00000 SCALE2 0.000000 0.016255 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002605 0.00000