HEADER CONTRACTILE PROTEIN 21-SEP-22 8GXR TITLE CRYSTAL STRUCTURE OF UBC DOMAIN OF UBE2O COMPND MOL_ID: 1; COMPND 2 MOLECULE: (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME UBE2O; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRAMETES PUBESCENS; SOURCE 3 ORGANISM_COMMON: WHITE-ROT FUNGUS; SOURCE 4 ORGANISM_TAXID: 154538; SOURCE 5 GENE: TRAPUB_10883; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS UBE2O, UBC DOMAIN, CONTRACTILE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Z.FU,W.ZHU,H.HUANG REVDAT 1 27-SEP-23 8GXR 0 JRNL AUTH Z.FU,Z.WENNING,H.HUANG JRNL TITL CRYSTAL STRUCTURE OF UBE2O JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.09 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 142901 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 7165 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.0900 - 5.2800 0.99 4811 262 0.1785 0.1843 REMARK 3 2 5.2800 - 4.1900 1.00 4689 239 0.1727 0.1810 REMARK 3 3 4.1900 - 3.6600 1.00 4604 258 0.1755 0.1996 REMARK 3 4 3.6600 - 3.3300 1.00 4582 242 0.2118 0.2371 REMARK 3 5 3.3300 - 3.0900 1.00 4563 228 0.2305 0.2714 REMARK 3 6 3.0900 - 2.9100 1.00 4579 230 0.2401 0.2902 REMARK 3 7 2.9100 - 2.7600 1.00 4536 247 0.2403 0.2531 REMARK 3 8 2.7600 - 2.6400 1.00 4515 259 0.2222 0.2611 REMARK 3 9 2.6400 - 2.5400 1.00 4537 234 0.2286 0.2443 REMARK 3 10 2.5400 - 2.4500 1.00 4525 234 0.2340 0.2835 REMARK 3 11 2.4500 - 2.3800 1.00 4456 255 0.2294 0.2592 REMARK 3 12 2.3800 - 2.3100 1.00 4542 222 0.2284 0.2720 REMARK 3 13 2.3100 - 2.2500 1.00 4509 234 0.2427 0.3183 REMARK 3 14 2.2500 - 2.1900 1.00 4555 209 0.2373 0.2466 REMARK 3 15 2.1900 - 2.1400 1.00 4491 234 0.2378 0.3004 REMARK 3 16 2.1400 - 2.1000 1.00 4478 253 0.2536 0.2932 REMARK 3 17 2.1000 - 2.0500 1.00 4514 246 0.2645 0.3031 REMARK 3 18 2.0500 - 2.0200 1.00 4438 251 0.2772 0.2981 REMARK 3 19 2.0200 - 1.9800 1.00 4532 226 0.2827 0.3247 REMARK 3 20 1.9800 - 1.9500 1.00 4476 237 0.2845 0.3231 REMARK 3 21 1.9500 - 1.9100 1.00 4500 248 0.3331 0.3734 REMARK 3 22 1.9100 - 1.8900 1.00 4473 237 0.3470 0.4052 REMARK 3 23 1.8900 - 1.8600 1.00 4508 230 0.3421 0.3720 REMARK 3 24 1.8600 - 1.8300 1.00 4457 230 0.3437 0.3818 REMARK 3 25 1.8300 - 1.8100 1.00 4469 253 0.3711 0.3910 REMARK 3 26 1.8100 - 1.7800 1.00 4505 230 0.3939 0.4654 REMARK 3 27 1.7800 - 1.7600 1.00 4454 231 0.4246 0.4759 REMARK 3 28 1.7600 - 1.7400 1.00 4472 226 0.4269 0.4473 REMARK 3 29 1.7400 - 1.7200 1.00 4511 248 0.4590 0.5069 REMARK 3 30 1.7200 - 1.7000 1.00 4455 232 0.4819 0.5238 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.950 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.09 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8GXR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 29-SEP-22. REMARK 100 THE DEPOSITION ID IS D_1300032430. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-SEP-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL10U2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979191 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 143060 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 38.090 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CITRATE, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.19500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 103.56500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.48000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 103.56500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.19500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.48000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 917 REMARK 465 ALA A 918 REMARK 465 ALA B 764 REMARK 465 GLY B 765 REMARK 465 ASP B 766 REMARK 465 LYS B 767 REMARK 465 SER B 768 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 666 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 667 CG CD OE1 NE2 REMARK 470 LYS A 767 CG CD CE NZ REMARK 470 LYS A 803 CG CD CE NZ REMARK 470 GLU A 808 CG CD OE1 OE2 REMARK 470 LYS A 867 CG CD CE NZ REMARK 470 ARG A 882 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 883 CG CD OE1 OE2 REMARK 470 GLN B 667 CG CD OE1 NE2 REMARK 470 MET B 669 CG SD CE REMARK 470 GLU B 769 CG CD OE1 OE2 REMARK 470 LYS B 803 CG CD CE NZ REMARK 470 GLU B 879 CG CD OE1 OE2 REMARK 470 ARG B 882 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 883 CG CD OE1 OE2 REMARK 470 GLN C 663 CG CD OE1 NE2 REMARK 470 ARG C 666 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 805 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 808 CG CD OE1 OE2 REMARK 470 GLU C 841 CG CD OE1 OE2 REMARK 470 GLU C 876 CG CD OE1 OE2 REMARK 470 VAL C 877 CG1 CG2 REMARK 470 GLU C 879 CG CD OE1 OE2 REMARK 470 ARG C 882 CG CD NE CZ NH1 NH2 REMARK 470 ASN C 917 CG OD1 ND2 REMARK 470 GLN D 663 CG CD OE1 NE2 REMARK 470 ARG D 666 CG CD NE CZ NH1 NH2 REMARK 470 GLN D 667 CG CD OE1 NE2 REMARK 470 TRP D 763 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP D 763 CZ3 CH2 REMARK 470 GLU D 808 CG CD OE1 OE2 REMARK 470 GLU D 841 CG CD OE1 OE2 REMARK 470 GLU D 842 CG CD OE1 OE2 REMARK 470 ARG D 845 CG CD NE CZ NH1 NH2 REMARK 470 GLN D 872 CG CD OE1 NE2 REMARK 470 ASP D 874 CG OD1 OD2 REMARK 470 GLU D 876 CG CD OE1 OE2 REMARK 470 GLU D 879 CG CD OE1 OE2 REMARK 470 ASP D 881 CG OD1 OD2 REMARK 470 ARG D 882 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 883 CG CD OE1 OE2 REMARK 470 ARG D 899 CG CD NE CZ NH1 NH2 REMARK 470 ASN D 917 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG B 830 OE1 GLU B 834 2.02 REMARK 500 OE2 GLU A 751 O HOH A 1101 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 664 157.19 68.80 REMARK 500 TRP A 738 55.02 -92.15 REMARK 500 HIS A 849 -66.90 -92.49 REMARK 500 GLU A 883 -5.56 72.28 REMARK 500 GLU A 915 49.07 -104.99 REMARK 500 TRP B 738 52.15 -90.11 REMARK 500 THR B 739 -165.73 -102.46 REMARK 500 HIS B 849 -64.80 -98.77 REMARK 500 ASP B 874 -127.09 80.43 REMARK 500 GLU B 876 -172.67 68.85 REMARK 500 ASN C 740 -137.39 64.24 REMARK 500 THR C 762 49.89 -148.48 REMARK 500 TRP C 763 161.61 179.99 REMARK 500 CYS C 797 43.35 -79.44 REMARK 500 TYR C 801 0.21 -64.85 REMARK 500 HIS C 849 -63.26 -95.40 REMARK 500 GLU C 883 -6.54 89.35 REMARK 500 ALA C 916 37.07 -86.09 REMARK 500 ASN D 658 48.29 -98.68 REMARK 500 THR D 739 -159.86 -101.92 REMARK 500 THR D 762 -1.04 -140.16 REMARK 500 TRP D 763 -59.19 -138.28 REMARK 500 ASP D 766 -166.21 -122.70 REMARK 500 HIS D 849 -72.38 -99.76 REMARK 500 ASN D 917 -7.62 -57.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 873 ASP A 874 -149.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 775 0.08 SIDE CHAIN REMARK 500 ARG B 830 0.10 SIDE CHAIN REMARK 500 ARG D 643 0.12 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF1 8GXR A 638 918 UNP A0A1M2VY70_TRAPU DBREF2 8GXR A A0A1M2VY70 638 918 DBREF1 8GXR B 638 918 UNP A0A1M2VY70_TRAPU DBREF2 8GXR B A0A1M2VY70 638 918 DBREF1 8GXR C 638 918 UNP A0A1M2VY70_TRAPU DBREF2 8GXR C A0A1M2VY70 638 918 DBREF1 8GXR D 638 918 UNP A0A1M2VY70_TRAPU DBREF2 8GXR D A0A1M2VY70 638 918 SEQADV 8GXR PRO A 639 UNP A0A1M2VY7 GLY 639 CONFLICT SEQADV 8GXR PRO B 639 UNP A0A1M2VY7 GLY 639 CONFLICT SEQADV 8GXR PRO C 639 UNP A0A1M2VY7 GLY 639 CONFLICT SEQADV 8GXR PRO D 639 UNP A0A1M2VY7 GLY 639 CONFLICT SEQRES 1 A 281 ASP PRO PRO TRP LYS ARG PHE GLU VAL LEU PRO SER ALA SEQRES 2 A 281 PRO VAL ASP HIS ALA PHE TYR ASN THR PRO PRO ALA GLN SEQRES 3 A 281 HIS THR ARG GLN PHE MET ALA ARG MET SER LYS GLU TYR SEQRES 4 A 281 LYS ALA LEU GLN SER SER LEU PRO ASP SER ILE LEU VAL SEQRES 5 A 281 ARG ALA TYR GLU ASP ARG THR ASP LEU LEU ARG SER LEU SEQRES 6 A 281 ILE ILE GLY PRO GLU ASN THR PRO TYR GLU ASP ALA PRO SEQRES 7 A 281 PHE VAL ILE ASP TRP MET LEU ASP ALA ASN PHE PRO GLN SEQRES 8 A 281 THR PRO PRO ILE ALA HIS PHE LEU SER TRP THR ASN GLY SEQRES 9 A 281 ASN GLY ARG VAL ASN PRO ASN LEU TYR GLU GLU GLY LYS SEQRES 10 A 281 VAL CYS LEU SER ILE LEU GLY THR TRP ALA GLY ASP LYS SEQRES 11 A 281 SER GLU SER TRP SER ALA SER ARG SER SER LEU LEU GLN SEQRES 12 A 281 ALA LEU VAL SER ILE GLN GLY LEU VAL LEU VAL LYS GLU SEQRES 13 A 281 PRO TRP PHE CYS GLU PRO ALA TYR GLU LYS LEU ARG GLY SEQRES 14 A 281 THR GLU ASP GLY ILE VAL ASN SER ARG LEU TYR ASN GLU SEQRES 15 A 281 LYS ALA TYR VAL LEU SER ARG GLY PHE VAL ARG ARG ALA SEQRES 16 A 281 LEU GLU ILE PRO LEU GLY GLY LEU GLU GLU GLU LEU ARG SEQRES 17 A 281 TRP PHE TYR HIS THR SER GLY LYS LEU ARG LYS VAL LEU SEQRES 18 A 281 GLY ASP ALA ARG ALA LEU ILE VAL LYS SER THR ALA THR SEQRES 19 A 281 GLN GLY ASP ALA GLU VAL PRO GLU ALA ASP ARG GLU ARG SEQRES 20 A 281 ALA VAL PRO ARG LEU SER SER GLY GLY ILE ILE ALA LEU SEQRES 21 A 281 GLU ARG THR LEU GLY LYS LEU GLN ALA LEU GLN ASP ALA SEQRES 22 A 281 GLN THR ALA THR GLU ALA ASN ALA SEQRES 1 B 281 ASP PRO PRO TRP LYS ARG PHE GLU VAL LEU PRO SER ALA SEQRES 2 B 281 PRO VAL ASP HIS ALA PHE TYR ASN THR PRO PRO ALA GLN SEQRES 3 B 281 HIS THR ARG GLN PHE MET ALA ARG MET SER LYS GLU TYR SEQRES 4 B 281 LYS ALA LEU GLN SER SER LEU PRO ASP SER ILE LEU VAL SEQRES 5 B 281 ARG ALA TYR GLU ASP ARG THR ASP LEU LEU ARG SER LEU SEQRES 6 B 281 ILE ILE GLY PRO GLU ASN THR PRO TYR GLU ASP ALA PRO SEQRES 7 B 281 PHE VAL ILE ASP TRP MET LEU ASP ALA ASN PHE PRO GLN SEQRES 8 B 281 THR PRO PRO ILE ALA HIS PHE LEU SER TRP THR ASN GLY SEQRES 9 B 281 ASN GLY ARG VAL ASN PRO ASN LEU TYR GLU GLU GLY LYS SEQRES 10 B 281 VAL CYS LEU SER ILE LEU GLY THR TRP ALA GLY ASP LYS SEQRES 11 B 281 SER GLU SER TRP SER ALA SER ARG SER SER LEU LEU GLN SEQRES 12 B 281 ALA LEU VAL SER ILE GLN GLY LEU VAL LEU VAL LYS GLU SEQRES 13 B 281 PRO TRP PHE CYS GLU PRO ALA TYR GLU LYS LEU ARG GLY SEQRES 14 B 281 THR GLU ASP GLY ILE VAL ASN SER ARG LEU TYR ASN GLU SEQRES 15 B 281 LYS ALA TYR VAL LEU SER ARG GLY PHE VAL ARG ARG ALA SEQRES 16 B 281 LEU GLU ILE PRO LEU GLY GLY LEU GLU GLU GLU LEU ARG SEQRES 17 B 281 TRP PHE TYR HIS THR SER GLY LYS LEU ARG LYS VAL LEU SEQRES 18 B 281 GLY ASP ALA ARG ALA LEU ILE VAL LYS SER THR ALA THR SEQRES 19 B 281 GLN GLY ASP ALA GLU VAL PRO GLU ALA ASP ARG GLU ARG SEQRES 20 B 281 ALA VAL PRO ARG LEU SER SER GLY GLY ILE ILE ALA LEU SEQRES 21 B 281 GLU ARG THR LEU GLY LYS LEU GLN ALA LEU GLN ASP ALA SEQRES 22 B 281 GLN THR ALA THR GLU ALA ASN ALA SEQRES 1 C 281 ASP PRO PRO TRP LYS ARG PHE GLU VAL LEU PRO SER ALA SEQRES 2 C 281 PRO VAL ASP HIS ALA PHE TYR ASN THR PRO PRO ALA GLN SEQRES 3 C 281 HIS THR ARG GLN PHE MET ALA ARG MET SER LYS GLU TYR SEQRES 4 C 281 LYS ALA LEU GLN SER SER LEU PRO ASP SER ILE LEU VAL SEQRES 5 C 281 ARG ALA TYR GLU ASP ARG THR ASP LEU LEU ARG SER LEU SEQRES 6 C 281 ILE ILE GLY PRO GLU ASN THR PRO TYR GLU ASP ALA PRO SEQRES 7 C 281 PHE VAL ILE ASP TRP MET LEU ASP ALA ASN PHE PRO GLN SEQRES 8 C 281 THR PRO PRO ILE ALA HIS PHE LEU SER TRP THR ASN GLY SEQRES 9 C 281 ASN GLY ARG VAL ASN PRO ASN LEU TYR GLU GLU GLY LYS SEQRES 10 C 281 VAL CYS LEU SER ILE LEU GLY THR TRP ALA GLY ASP LYS SEQRES 11 C 281 SER GLU SER TRP SER ALA SER ARG SER SER LEU LEU GLN SEQRES 12 C 281 ALA LEU VAL SER ILE GLN GLY LEU VAL LEU VAL LYS GLU SEQRES 13 C 281 PRO TRP PHE CYS GLU PRO ALA TYR GLU LYS LEU ARG GLY SEQRES 14 C 281 THR GLU ASP GLY ILE VAL ASN SER ARG LEU TYR ASN GLU SEQRES 15 C 281 LYS ALA TYR VAL LEU SER ARG GLY PHE VAL ARG ARG ALA SEQRES 16 C 281 LEU GLU ILE PRO LEU GLY GLY LEU GLU GLU GLU LEU ARG SEQRES 17 C 281 TRP PHE TYR HIS THR SER GLY LYS LEU ARG LYS VAL LEU SEQRES 18 C 281 GLY ASP ALA ARG ALA LEU ILE VAL LYS SER THR ALA THR SEQRES 19 C 281 GLN GLY ASP ALA GLU VAL PRO GLU ALA ASP ARG GLU ARG SEQRES 20 C 281 ALA VAL PRO ARG LEU SER SER GLY GLY ILE ILE ALA LEU SEQRES 21 C 281 GLU ARG THR LEU GLY LYS LEU GLN ALA LEU GLN ASP ALA SEQRES 22 C 281 GLN THR ALA THR GLU ALA ASN ALA SEQRES 1 D 281 ASP PRO PRO TRP LYS ARG PHE GLU VAL LEU PRO SER ALA SEQRES 2 D 281 PRO VAL ASP HIS ALA PHE TYR ASN THR PRO PRO ALA GLN SEQRES 3 D 281 HIS THR ARG GLN PHE MET ALA ARG MET SER LYS GLU TYR SEQRES 4 D 281 LYS ALA LEU GLN SER SER LEU PRO ASP SER ILE LEU VAL SEQRES 5 D 281 ARG ALA TYR GLU ASP ARG THR ASP LEU LEU ARG SER LEU SEQRES 6 D 281 ILE ILE GLY PRO GLU ASN THR PRO TYR GLU ASP ALA PRO SEQRES 7 D 281 PHE VAL ILE ASP TRP MET LEU ASP ALA ASN PHE PRO GLN SEQRES 8 D 281 THR PRO PRO ILE ALA HIS PHE LEU SER TRP THR ASN GLY SEQRES 9 D 281 ASN GLY ARG VAL ASN PRO ASN LEU TYR GLU GLU GLY LYS SEQRES 10 D 281 VAL CYS LEU SER ILE LEU GLY THR TRP ALA GLY ASP LYS SEQRES 11 D 281 SER GLU SER TRP SER ALA SER ARG SER SER LEU LEU GLN SEQRES 12 D 281 ALA LEU VAL SER ILE GLN GLY LEU VAL LEU VAL LYS GLU SEQRES 13 D 281 PRO TRP PHE CYS GLU PRO ALA TYR GLU LYS LEU ARG GLY SEQRES 14 D 281 THR GLU ASP GLY ILE VAL ASN SER ARG LEU TYR ASN GLU SEQRES 15 D 281 LYS ALA TYR VAL LEU SER ARG GLY PHE VAL ARG ARG ALA SEQRES 16 D 281 LEU GLU ILE PRO LEU GLY GLY LEU GLU GLU GLU LEU ARG SEQRES 17 D 281 TRP PHE TYR HIS THR SER GLY LYS LEU ARG LYS VAL LEU SEQRES 18 D 281 GLY ASP ALA ARG ALA LEU ILE VAL LYS SER THR ALA THR SEQRES 19 D 281 GLN GLY ASP ALA GLU VAL PRO GLU ALA ASP ARG GLU ARG SEQRES 20 D 281 ALA VAL PRO ARG LEU SER SER GLY GLY ILE ILE ALA LEU SEQRES 21 D 281 GLU ARG THR LEU GLY LYS LEU GLN ALA LEU GLN ASP ALA SEQRES 22 D 281 GLN THR ALA THR GLU ALA ASN ALA HET CIT A1001 13 HET CIT B1001 13 HET CIT C1001 13 HET CIT D1001 13 HETNAM CIT CITRIC ACID FORMUL 5 CIT 4(C6 H8 O7) FORMUL 9 HOH *283(H2 O) HELIX 1 AA1 GLN A 667 LEU A 683 1 17 HELIX 2 AA2 LEU A 757 GLY A 761 5 5 HELIX 3 AA3 SER A 777 VAL A 789 1 13 HELIX 4 AA4 GLU A 793 ARG A 805 5 13 HELIX 5 AA5 THR A 807 ILE A 835 1 29 HELIX 6 AA6 LEU A 840 HIS A 849 1 10 HELIX 7 AA7 GLY A 852 THR A 871 1 20 HELIX 8 AA8 PRO A 878 ARG A 882 5 5 HELIX 9 AA9 SER A 890 GLU A 915 1 26 HELIX 10 AB1 GLN B 667 LEU B 683 1 17 HELIX 11 AB2 LEU B 757 GLY B 761 5 5 HELIX 12 AB3 SER B 777 VAL B 789 1 13 HELIX 13 AB4 GLU B 793 ARG B 805 5 13 HELIX 14 AB5 THR B 807 ILE B 835 1 29 HELIX 15 AB6 LEU B 840 HIS B 849 1 10 HELIX 16 AB7 GLY B 852 THR B 871 1 20 HELIX 17 AB8 PRO B 878 ARG B 882 5 5 HELIX 18 AB9 SER B 890 GLU B 915 1 26 HELIX 19 AC1 GLN C 667 LEU C 683 1 17 HELIX 20 AC2 LEU C 757 GLY C 761 5 5 HELIX 21 AC3 SER C 777 VAL C 789 1 13 HELIX 22 AC4 GLU C 793 CYS C 797 5 5 HELIX 23 AC5 PRO C 799 ARG C 805 5 7 HELIX 24 AC6 THR C 807 ILE C 835 1 29 HELIX 25 AC7 LEU C 840 HIS C 849 1 10 HELIX 26 AC8 GLY C 852 THR C 871 1 20 HELIX 27 AC9 SER C 890 ALA C 916 1 27 HELIX 28 AD1 GLN D 667 LEU D 683 1 17 HELIX 29 AD2 LEU D 757 GLY D 761 5 5 HELIX 30 AD3 SER D 777 VAL D 789 1 13 HELIX 31 AD4 GLU D 793 CYS D 797 5 5 HELIX 32 AD5 GLU D 798 LYS D 803 1 6 HELIX 33 AD6 THR D 807 ILE D 835 1 29 HELIX 34 AD7 LEU D 840 HIS D 849 1 10 HELIX 35 AD8 GLY D 852 THR D 871 1 20 HELIX 36 AD9 GLY D 873 VAL D 877 5 5 HELIX 37 AE1 PRO D 878 ARG D 882 5 5 HELIX 38 AE2 SER D 890 ALA D 918 1 29 SHEET 1 AA1 5 PHE A 644 LEU A 647 0 SHEET 2 AA1 5 ILE A 687 TYR A 692 1 O ALA A 691 N LEU A 647 SHEET 3 AA1 5 LEU A 698 ILE A 704 -1 O ARG A 700 N ARG A 690 SHEET 4 AA1 5 PRO A 715 MET A 721 -1 O TRP A 720 N LEU A 699 SHEET 5 AA1 5 ILE A 732 PHE A 735 -1 O ILE A 732 N MET A 721 SHEET 1 AA2 5 PHE B 644 LEU B 647 0 SHEET 2 AA2 5 ILE B 687 TYR B 692 1 O ALA B 691 N LEU B 647 SHEET 3 AA2 5 LEU B 698 ILE B 704 -1 O ARG B 700 N ARG B 690 SHEET 4 AA2 5 PRO B 715 MET B 721 -1 O TRP B 720 N LEU B 699 SHEET 5 AA2 5 ILE B 732 PHE B 735 -1 O ILE B 732 N MET B 721 SHEET 1 AA3 5 PHE C 644 LEU C 647 0 SHEET 2 AA3 5 ILE C 687 TYR C 692 1 O ALA C 691 N LEU C 647 SHEET 3 AA3 5 LEU C 698 ILE C 704 -1 O ARG C 700 N ARG C 690 SHEET 4 AA3 5 PRO C 715 MET C 721 -1 O TRP C 720 N LEU C 699 SHEET 5 AA3 5 ILE C 732 PHE C 735 -1 O ILE C 732 N MET C 721 SHEET 1 AA4 5 PHE D 644 LEU D 647 0 SHEET 2 AA4 5 ILE D 687 TYR D 692 1 O ALA D 691 N LEU D 647 SHEET 3 AA4 5 LEU D 698 ILE D 704 -1 O ARG D 700 N ARG D 690 SHEET 4 AA4 5 PRO D 715 MET D 721 -1 O TRP D 720 N LEU D 699 SHEET 5 AA4 5 ILE D 732 PHE D 735 -1 O ILE D 732 N MET D 721 CISPEP 1 PHE A 726 PRO A 727 0 7.25 CISPEP 2 PHE B 726 PRO B 727 0 6.15 CISPEP 3 PHE C 726 PRO C 727 0 6.72 CISPEP 4 PHE D 726 PRO D 727 0 8.12 CRYST1 64.390 96.960 207.130 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015530 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010314 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004828 0.00000