HEADER CELL ADHESION 23-SEP-22 8GYR TITLE CRYSTAL STRUCTURE OF A VARIABLE REGION SEGMENT OF LEPTOSPIRA HOST- TITLE 2 INTERACTING OUTER SURFACE PROTEIN, LIGA COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEPTOSPIRA IMMUNOGLOBULIN-LIKE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: LIGA; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEPTOSPIRA INTERROGANS; SOURCE 3 ORGANISM_TAXID: 173; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: LEPTOSPIRA INTERROGANS; SOURCE 8 ORGANISM_TAXID: 173; SOURCE 9 GENE: LIGA; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LEPTOSPIRA, LEPTOSPIRA IMMUNOGLOBULIN-LIKE PROTEIN (LIG), MICROBIAL KEYWDS 2 SURFACE COMPONENTS RECOGNIZING ADHESIVE MATRIX MOLECULE (MSCRAMM), KEYWDS 3 CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR P.KUMAR,M.AKIF REVDAT 3 07-FEB-24 8GYR 1 REMARK REVDAT 2 05-JUL-23 8GYR 1 JRNL REVDAT 1 28-JUN-23 8GYR 0 JRNL AUTH P.KUMAR,P.VYAS,S.M.FAISAL,Y.F.CHANG,M.AKIF JRNL TITL CRYSTAL STRUCTURE OF A VARIABLE REGION SEGMENT OF LEPTOSPIRA JRNL TITL 2 HOST-INTERACTING OUTER SURFACE PROTEIN, LIGA, REVEALS THE JRNL TITL 3 ORIENTATION OF IG-LIKE DOMAINS. JRNL REF INT.J.BIOL.MACROMOL. V. 244 25445 2023 JRNL REFN ISSN 0141-8130 JRNL PMID 37336372 JRNL DOI 10.1016/J.IJBIOMAC.2023.125445 REMARK 2 REMARK 2 RESOLUTION. 1.87 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.87 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 85.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 30215 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1527 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.87 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.92 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1746 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.75 REMARK 3 BIN R VALUE (WORKING SET) : 0.3040 REMARK 3 BIN FREE R VALUE SET COUNT : 100 REMARK 3 BIN FREE R VALUE : 0.3290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2645 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 41 REMARK 3 SOLVENT ATOMS : 315 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.41000 REMARK 3 B22 (A**2) : 0.62000 REMARK 3 B33 (A**2) : 0.80000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.161 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.141 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.118 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.551 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.906 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2697 ; 0.010 ; 0.018 REMARK 3 BOND LENGTHS OTHERS (A): 2614 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3652 ; 1.337 ; 1.872 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6061 ; 1.020 ; 2.856 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 363 ; 6.082 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 78 ;36.367 ;26.154 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 477 ;13.311 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 2 ; 7.236 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 464 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2987 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 509 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1458 ; 1.410 ; 1.054 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1457 ; 1.410 ; 1.053 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1819 ; 2.031 ; 1.571 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1820 ; 2.032 ; 1.572 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1239 ; 2.639 ; 1.319 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1236 ; 2.577 ; 1.321 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1828 ; 3.688 ; 1.859 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2973 ; 6.190 ;14.532 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2918 ; 6.069 ;14.125 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 210 REMARK 3 ORIGIN FOR THE GROUP (A): -14.0340 3.5230 -19.3760 REMARK 3 T TENSOR REMARK 3 T11: 0.1061 T22: 0.0079 REMARK 3 T33: 0.0051 T12: -0.0133 REMARK 3 T13: -0.0044 T23: 0.0056 REMARK 3 L TENSOR REMARK 3 L11: 0.4054 L22: 1.7949 REMARK 3 L33: 2.6858 L12: -0.3900 REMARK 3 L13: 0.2143 L23: -2.0222 REMARK 3 S TENSOR REMARK 3 S11: -0.0205 S12: 0.0429 S13: 0.0436 REMARK 3 S21: 0.0679 S22: -0.0053 S23: -0.0363 REMARK 3 S31: -0.1667 S32: 0.0009 S33: 0.0258 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 202 REMARK 3 ORIGIN FOR THE GROUP (A): -16.0750 -3.6660 9.3130 REMARK 3 T TENSOR REMARK 3 T11: 0.1602 T22: 0.0379 REMARK 3 T33: 0.0368 T12: -0.0042 REMARK 3 T13: 0.0072 T23: -0.0203 REMARK 3 L TENSOR REMARK 3 L11: 0.3237 L22: 1.5559 REMARK 3 L33: 2.1496 L12: 0.6483 REMARK 3 L13: -0.7219 L23: -1.7611 REMARK 3 S TENSOR REMARK 3 S11: 0.0632 S12: -0.0670 S13: 0.0295 REMARK 3 S21: 0.1652 S22: -0.1021 S23: -0.0218 REMARK 3 S31: -0.1742 S32: 0.1589 S33: 0.0389 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.30 REMARK 3 ION PROBE RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 1.00 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 8GYR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-SEP-22. REMARK 100 THE DEPOSITION ID IS D_1300032470. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : POINTLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31943 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.870 REMARK 200 RESOLUTION RANGE LOW (A) : 85.920 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.11300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.87 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.91 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BUCCANEER REMARK 200 STARTING MODEL: 2MOG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 23% PEG 3350, 260MM POTASSIUM IODIDE REMARK 280 AND 100MM BIS-TRIS PROPANE, PH 7.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 17.10950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.91950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.95250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 85.91950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 17.10950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.95250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 80 -2.42 70.07 REMARK 500 ASN A 138 97.79 -163.34 REMARK 500 GLU B 79 -124.70 57.26 REMARK 500 ASN B 138 97.22 -160.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 209 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 10 O REMARK 620 2 THR A 13 OG1 96.6 REMARK 620 3 LYS A 84 O 93.7 159.8 REMARK 620 4 HOH A 399 O 90.4 68.3 129.2 REMARK 620 5 HOH A 401 O 81.5 137.0 61.9 68.8 REMARK 620 6 HOH A 441 O 151.4 89.1 73.8 117.6 112.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 202 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 53 OG REMARK 620 2 HOH A 313 O 90.5 REMARK 620 3 THR B 167 OG1 97.0 51.9 REMARK 620 4 HOH B 427 O 142.6 98.1 62.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 201 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 172 O REMARK 620 2 HOH A 369 O 104.5 REMARK 620 3 HOH A 451 O 113.1 107.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 209 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 379 O REMARK 620 2 HOH B 325 O 118.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL B 10 O REMARK 620 2 THR B 13 OG1 92.9 REMARK 620 3 LYS B 84 O 94.8 159.4 REMARK 620 4 THR B 85 OG1 80.2 78.4 84.1 REMARK 620 5 HOH B 385 O 81.2 143.3 57.1 134.9 REMARK 620 6 HOH B 425 O 86.1 71.1 128.5 145.8 72.4 REMARK 620 7 HOH B 439 O 154.3 88.4 76.5 75.0 112.2 118.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 210 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN B 42 OE1 REMARK 620 2 HOH B 403 O 104.4 REMARK 620 3 HOH B 450 O 120.9 114.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 203 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 49 O REMARK 620 2 LEU B 52 O 59.1 REMARK 620 3 HOH B 379 O 136.7 84.4 REMARK 620 4 HOH B 394 O 72.6 118.5 111.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 204 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 172 O REMARK 620 2 HOH B 322 O 94.6 REMARK 620 N 1 DBREF 8GYR A 1 182 UNP C0J1Q2 C0J1Q2_LEPIR 669 850 DBREF 8GYR B 2 184 UNP C0J1Q2 C0J1Q2_LEPIR 670 852 SEQADV 8GYR ILE A 93 UNP C0J1Q2 VAL 761 CONFLICT SEQADV 8GYR ALA A 174 UNP C0J1Q2 GLN 842 CONFLICT SEQADV 8GYR ILE B 93 UNP C0J1Q2 VAL 761 CONFLICT SEQRES 1 A 182 THR GLN ALA THR LEU THR SER ILE GLU VAL SER PRO THR SEQRES 2 A 182 ARG ALA SER ILE ALA LYS GLY MET THR GLN LYS PHE THR SEQRES 3 A 182 ALA THR GLY ILE PHE THR ASP HIS SER LYS LYS ASN ILE SEQRES 4 A 182 THR GLU GLN VAL THR TRP LYS SER SER SER LYS ALA LEU SEQRES 5 A 182 SER MET LEU ASN ALA PRO GLY GLU GLU GLY THR GLY LYS SEQRES 6 A 182 ALA ILE ALA VAL GLY ASN ILE SER ILE THR ALA THR LEU SEQRES 7 A 182 GLU LYS LEU SER GLY LYS THR ASP ILE THR VAL THR PRO SEQRES 8 A 182 ALA ILE LEU THR SER ILE GLN ILE SER PRO VAL LYS HIS SEQRES 9 A 182 CYS LEU VAL LYS GLY LEU THR GLU LYS PHE SER ALA THR SEQRES 10 A 182 GLY ILE TYR SER ASP ASN SER SER LYS ASP ILE THR SER SEQRES 11 A 182 ALA VAL THR TRP HIS SER SER ASN ASN SER VAL ALA THR SEQRES 12 A 182 ILE SER ASN THR LYS GLY TYR GLN GLY GLN ALA HIS GLY SEQRES 13 A 182 THR GLY THR GLY THR VAL ASP ILE LYS ALA THR LEU GLY SEQRES 14 A 182 ASN VAL SER SER ALA VAL SER LYS LEU SER VAL THR ALA SEQRES 1 B 183 GLN ALA THR LEU THR SER ILE GLU VAL SER PRO THR ARG SEQRES 2 B 183 ALA SER ILE ALA LYS GLY MET THR GLN LYS PHE THR ALA SEQRES 3 B 183 THR GLY ILE PHE THR ASP HIS SER LYS LYS ASN ILE THR SEQRES 4 B 183 GLU GLN VAL THR TRP LYS SER SER SER LYS ALA LEU SER SEQRES 5 B 183 MET LEU ASN ALA PRO GLY GLU GLU GLY THR GLY LYS ALA SEQRES 6 B 183 ILE ALA VAL GLY ASN ILE SER ILE THR ALA THR LEU GLU SEQRES 7 B 183 LYS LEU SER GLY LYS THR ASP ILE THR VAL THR PRO ALA SEQRES 8 B 183 ILE LEU THR SER ILE GLN ILE SER PRO VAL LYS HIS CYS SEQRES 9 B 183 LEU VAL LYS GLY LEU THR GLU LYS PHE SER ALA THR GLY SEQRES 10 B 183 ILE TYR SER ASP ASN SER SER LYS ASP ILE THR SER ALA SEQRES 11 B 183 VAL THR TRP HIS SER SER ASN ASN SER VAL ALA THR ILE SEQRES 12 B 183 SER ASN THR LYS GLY TYR GLN GLY GLN ALA HIS GLY THR SEQRES 13 B 183 GLY THR GLY THR VAL ASP ILE LYS ALA THR LEU GLY ASN SEQRES 14 B 183 VAL SER SER GLN VAL SER LYS LEU SER VAL THR ALA ALA SEQRES 15 B 183 GLU HET K A 201 1 HET K A 202 1 HET CL A 203 1 HET EDO A 204 4 HET EDO A 205 4 HET PO4 A 206 5 HET NA A 207 1 HET NA A 208 1 HET CA A 209 1 HET IOD A 210 1 HET NA A 211 1 HET CA B 201 1 HET IOD B 202 1 HET K B 203 1 HET K B 204 1 HET EDO B 205 4 HET EDO B 206 4 HET PO4 B 207 5 HET NA B 208 1 HET K B 209 1 HET NA B 210 1 HETNAM K POTASSIUM ION HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM PO4 PHOSPHATE ION HETNAM NA SODIUM ION HETNAM CA CALCIUM ION HETNAM IOD IODIDE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 K 5(K 1+) FORMUL 5 CL CL 1- FORMUL 6 EDO 4(C2 H6 O2) FORMUL 8 PO4 2(O4 P 3-) FORMUL 9 NA 5(NA 1+) FORMUL 11 CA 2(CA 2+) FORMUL 12 IOD 2(I 1-) FORMUL 24 HOH *315(H2 O) SHEET 1 AA1 3 LEU A 5 SER A 11 0 SHEET 2 AA1 3 THR A 26 PHE A 31 -1 O ILE A 30 N THR A 6 SHEET 3 AA1 3 LYS A 36 ASN A 38 -1 O LYS A 37 N GLY A 29 SHEET 1 AA2 8 THR A 44 SER A 47 0 SHEET 2 AA2 8 GLY A 70 LEU A 78 -1 O THR A 75 N LYS A 46 SHEET 3 AA2 8 LEU A 81 THR A 90 -1 O VAL A 89 N GLY A 70 SHEET 4 AA2 8 ARG A 14 ALA A 18 1 N ALA A 15 O THR A 88 SHEET 5 AA2 8 THR B 13 ALA B 18 -1 O THR B 13 N SER A 16 SHEET 6 AA2 8 LEU B 81 THR B 90 1 O THR B 88 N ALA B 15 SHEET 7 AA2 8 GLY B 70 LEU B 78 -1 N GLY B 70 O VAL B 89 SHEET 8 AA2 8 THR B 44 SER B 47 -1 N LYS B 46 O THR B 75 SHEET 1 AA3 3 THR A 22 LYS A 24 0 SHEET 2 AA3 3 THR A 63 ALA A 66 -1 O GLY A 64 N GLN A 23 SHEET 3 AA3 3 LEU A 52 MET A 54 -1 N SER A 53 O LYS A 65 SHEET 1 AA4 3 LEU A 94 SER A 100 0 SHEET 2 AA4 3 SER A 115 TYR A 120 -1 O ILE A 119 N SER A 96 SHEET 3 AA4 3 SER A 125 ASP A 127 -1 O LYS A 126 N GLY A 118 SHEET 1 AA5 4 LYS A 103 VAL A 107 0 SHEET 2 AA5 4 SER A 176 THR A 181 1 O SER A 179 N LEU A 106 SHEET 3 AA5 4 GLY A 160 LEU A 168 -1 N VAL A 162 O LEU A 178 SHEET 4 AA5 4 THR A 133 SER A 136 -1 N THR A 133 O THR A 167 SHEET 1 AA6 4 LYS A 103 VAL A 107 0 SHEET 2 AA6 4 SER A 176 THR A 181 1 O SER A 179 N LEU A 106 SHEET 3 AA6 4 GLY A 160 LEU A 168 -1 N VAL A 162 O LEU A 178 SHEET 4 AA6 4 VAL A 171 SER A 172 -1 O VAL A 171 N LEU A 168 SHEET 1 AA7 3 THR A 111 LYS A 113 0 SHEET 2 AA7 3 GLN A 153 GLY A 156 -1 O ALA A 154 N GLU A 112 SHEET 3 AA7 3 ALA A 142 ILE A 144 -1 N THR A 143 O HIS A 155 SHEET 1 AA8 3 LEU B 5 SER B 11 0 SHEET 2 AA8 3 THR B 26 PHE B 31 -1 O ILE B 30 N THR B 6 SHEET 3 AA8 3 LYS B 36 ASN B 38 -1 O LYS B 37 N GLY B 29 SHEET 1 AA9 3 THR B 22 LYS B 24 0 SHEET 2 AA9 3 THR B 63 ALA B 66 -1 O GLY B 64 N GLN B 23 SHEET 3 AA9 3 LEU B 52 MET B 54 -1 N SER B 53 O LYS B 65 SHEET 1 AB1 3 LEU B 94 SER B 100 0 SHEET 2 AB1 3 SER B 115 TYR B 120 -1 O ILE B 119 N SER B 96 SHEET 3 AB1 3 SER B 125 ASP B 127 -1 O LYS B 126 N GLY B 118 SHEET 1 AB2 4 LYS B 103 VAL B 107 0 SHEET 2 AB2 4 SER B 176 THR B 181 1 O SER B 179 N LEU B 106 SHEET 3 AB2 4 GLY B 160 LEU B 168 -1 N VAL B 162 O LEU B 178 SHEET 4 AB2 4 THR B 133 SER B 136 -1 N THR B 133 O THR B 167 SHEET 1 AB3 4 LYS B 103 VAL B 107 0 SHEET 2 AB3 4 SER B 176 THR B 181 1 O SER B 179 N LEU B 106 SHEET 3 AB3 4 GLY B 160 LEU B 168 -1 N VAL B 162 O LEU B 178 SHEET 4 AB3 4 VAL B 171 SER B 172 -1 O VAL B 171 N LEU B 168 SHEET 1 AB4 3 THR B 111 LYS B 113 0 SHEET 2 AB4 3 GLN B 153 GLY B 156 -1 O ALA B 154 N GLU B 112 SHEET 3 AB4 3 ALA B 142 ILE B 144 -1 N THR B 143 O HIS B 155 LINK O VAL A 10 CA CA A 209 1555 1555 2.60 LINK OG1 THR A 13 CA CA A 209 1555 1555 2.90 LINK OG SER A 53 K K A 202 1555 1555 2.79 LINK O LYS A 84 CA CA A 209 1555 1555 2.99 LINK O SER A 172 K K A 201 1555 1555 2.55 LINK K K A 201 O HOH A 369 1555 1555 3.05 LINK K K A 201 O HOH A 451 1555 1555 2.99 LINK K K A 202 O HOH A 313 1555 1555 2.88 LINK K K A 202 OG1 THR B 167 4445 1555 2.86 LINK K K A 202 O HOH B 427 1555 4545 2.99 LINK O1 EDO A 205 NA NA A 208 1555 1555 2.01 LINK CA CA A 209 O HOH A 399 1555 1555 2.62 LINK CA CA A 209 O HOH A 401 1555 1555 2.79 LINK CA CA A 209 O HOH A 441 1555 1555 2.72 LINK NA NA A 211 O HOH B 384 1555 4545 3.01 LINK O HOH A 379 K K B 209 4445 1555 3.31 LINK O VAL B 10 CA CA B 201 1555 1555 2.63 LINK OG1 THR B 13 CA CA B 201 1555 1555 3.20 LINK OE1 GLN B 42 NA NA B 210 1555 1555 2.25 LINK O SER B 49 K K B 203 1555 1555 3.10 LINK O LEU B 52 K K B 203 1555 1555 3.02 LINK O LYS B 84 CA CA B 201 1555 1555 3.07 LINK OG1 THR B 85 CA CA B 201 1555 1555 3.19 LINK O SER B 172 K K B 204 1555 1555 2.66 LINK CA CA B 201 O HOH B 385 1555 1555 2.85 LINK CA CA B 201 O HOH B 425 1555 1555 2.76 LINK CA CA B 201 O HOH B 439 1555 1555 2.69 LINK K K B 203 O HOH B 379 1555 1555 3.06 LINK K K B 203 O HOH B 394 1555 1555 2.90 LINK K K B 204 O HOH B 322 1555 1555 2.91 LINK K K B 209 O HOH B 325 1555 4445 3.35 LINK NA NA B 210 O HOH B 403 1555 1555 2.48 LINK NA NA B 210 O HOH B 450 1555 1555 2.34 CISPEP 1 SER A 11 PRO A 12 0 -0.61 CISPEP 2 SER A 100 PRO A 101 0 -0.69 CISPEP 3 SER B 11 PRO B 12 0 0.97 CISPEP 4 SER B 100 PRO B 101 0 0.33 CRYST1 34.219 63.905 171.839 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029224 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015648 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005819 0.00000